AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070139

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070139.t1 MTR_2g044210 96.567 233 2 1 1 233 1 227 7.24e-162 446
MS.gene070139.t1 MTR_2g044210 89.189 222 15 2 1 222 1 213 1.16e-138 389
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070139.t1 AT5G49010 57.082 233 87 3 1 233 1 220 3.05e-84 250
MS.gene070139.t1 AT5G49010 58.333 180 65 2 1 180 1 170 5.76e-64 197

Find 43 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGAACCTTGTTTCTATTA+AGG 0.244460 2.4:+45888475 MS.gene070139:CDS
AACTTTGGAACAGACTTTCT+AGG 0.280314 2.4:+45888930 MS.gene070139:CDS
CAAAGGACAGATTGAATTGA+TGG 0.410021 2.4:+45888129 MS.gene070139:CDS
CAAAACAAACGTGTCTAGTC+GGG 0.413755 2.4:-45890578 None:intergenic
TGCTCTCTAGATGTTCCTTC+AGG 0.422302 2.4:-45889120 None:intergenic
AACATCAGTGGTTGAAATCA+AGG 0.435422 2.4:-45888026 None:intergenic
CAAATGAAGTAAAGGACATC+AGG 0.440202 2.4:-45890763 None:intergenic
GATAATTGCCTGTCATCAAC+AGG 0.456044 2.4:-45890646 None:intergenic
GATTCAAAACGAAGAATCTC+GGG 0.462194 2.4:-45888088 None:intergenic
TTCTGTATCTCTGTATCAGA+TGG 0.469476 2.4:+45888446 MS.gene070139:CDS
ATCCATGGGTTCAAGATCTA+CGG 0.481878 2.4:+45887967 None:intergenic
AACGTGTCTAGTCGGGGTGC+TGG 0.493562 2.4:-45890571 None:intergenic
AGATTCAAAACGAAGAATCT+CGG 0.501966 2.4:-45888089 None:intergenic
ACTTTGGAACAGACTTTCTA+GGG 0.506098 2.4:+45888931 MS.gene070139:CDS
GCGAGCATGGCGTAACGAAA+AGG 0.511669 2.4:+45888060 MS.gene070139:CDS
ATAAAACCACTTGTAGAGAG+TGG 0.514618 2.4:+45890796 MS.gene070139:CDS
GATTTGATCAACCGCGTCAA+AGG 0.524234 2.4:+45888112 MS.gene070139:CDS
TTCCGTAGATCTTGAACCCA+TGG 0.527155 2.4:-45887969 None:intergenic
TTACCTTCAGGATGCGGATG+CGG 0.527448 2.4:-45888506 None:intergenic
CAGGTCGAAGCTGTTTGAGA+TGG 0.531476 2.4:+45890738 MS.gene070139:intron
ATTTGTAACAAATGAAGTAA+AGG 0.537264 2.4:-45890771 None:intergenic
GACTGATTACCTTCAGGATG+CGG 0.542811 2.4:-45888512 None:intergenic
ACAGGAATTCAACTTGAAGA+TGG 0.546681 2.4:+45890622 MS.gene070139:CDS
ACAAAACAAACGTGTCTAGT+CGG 0.547750 2.4:-45890579 None:intergenic
CATTAGTGAAGAGGATGACA+TGG 0.553868 2.4:+45889195 MS.gene070139:CDS
TTGAGCTTCTCAAGCGAGCA+TGG 0.560140 2.4:+45888047 MS.gene070139:CDS
ACAATCTGTCATTAGTGAAG+AGG 0.570258 2.4:+45889186 MS.gene070139:CDS
AAGATGGACCTGTTGATGAC+AGG 0.572063 2.4:+45890638 MS.gene070139:CDS
TCTCCGCATCCGCATCCTGA+AGG 0.576234 2.4:+45888503 MS.gene070139:CDS
TAAAACCACTTGTAGAGAGT+GGG 0.580787 2.4:+45890797 MS.gene070139:CDS
TGATACAGAGATACAGAAAG+AGG 0.584753 2.4:-45888441 None:intergenic
AGAAGTAAAGAATATCTCAC+AGG 0.604102 2.4:+45890604 MS.gene070139:CDS
CTTGAGAAGCTCAACATCAG+TGG 0.611012 2.4:-45888038 None:intergenic
GATACAGAGATACAGAAAGA+GGG 0.651435 2.4:-45888440 None:intergenic
CAGGTGCACAGATGACCTGA+AGG 0.652118 2.4:+45889105 MS.gene070139:intron
GTGGAAGAGAAATTGTCTGT+TGG 0.657885 2.4:+45888411 MS.gene070139:CDS
AAAACAAACGTGTCTAGTCG+GGG 0.662409 2.4:-45890577 None:intergenic
ATGGGTTCAAGATCTACGGA+AGG 0.674495 2.4:+45887971 MS.gene070139:CDS
ATTCAAAACGAAGAATCTCG+GGG 0.677114 2.4:-45888087 None:intergenic
ATTCAATCTGTCCTTTGACG+CGG 0.682411 2.4:-45888123 None:intergenic
ATTAGTGAAGAGGATGACAT+GGG 0.687742 2.4:+45889196 MS.gene070139:CDS
ATATGACCTTAATAGAAACA+AGG 0.692807 2.4:-45888481 None:intergenic
TTCAAAACGAAGAATCTCGG+GGG 0.737687 2.4:-45888086 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTAAATTTCTTATTGT+CGG + chr2.4:45888290-45888309 MS.gene070139:intron 15.0%
!! AATCTAGTTAAAGATTAATA+AGG - chr2.4:45888679-45888698 None:intergenic 15.0%
!! AAAGTGATAGGATTATTTAT+GGG + chr2.4:45888558-45888577 MS.gene070139:intron 20.0%
!! AAATTGAAATTCATTTCAGT+TGG - chr2.4:45888210-45888229 None:intergenic 20.0%
!! AAGAAATAACAAAACCAAAA+AGG - chr2.4:45889243-45889262 None:intergenic 20.0%
!! AGAATCATTTAGTTAGTTAT+GGG + chr2.4:45889971-45889990 MS.gene070139:intron 20.0%
!! ATTTGTAACAAATGAAGTAA+AGG - chr2.4:45890774-45890793 None:intergenic 20.0%
!! CAAAGACATAACATATAAAA+AGG - chr2.4:45890485-45890504 None:intergenic 20.0%
!! CTAAAAAATTGAAAAGAGAA+GGG + chr2.4:45889758-45889777 MS.gene070139:intron 20.0%
!! TAAAAAATTGAAAAGAGAAG+GGG + chr2.4:45889759-45889778 MS.gene070139:intron 20.0%
!! TATGTTAAGAAACATAAGAA+GGG + chr2.4:45889852-45889871 MS.gene070139:intron 20.0%
!! TTACATAAAACCTATGATAT+AGG - chr2.4:45888765-45888784 None:intergenic 20.0%
!! TTATGTTAAGAAACATAAGA+AGG + chr2.4:45889851-45889870 MS.gene070139:intron 20.0%
!! TTATTAAATGTGAAGTAACT+AGG - chr2.4:45888360-45888379 None:intergenic 20.0%
!! TTGTTGAAATATTTGAATAC+TGG + chr2.4:45888801-45888820 MS.gene070139:intron 20.0%
!!! AAAATTTCTTGTTACCATTT+TGG + chr2.4:45889337-45889356 MS.gene070139:intron 20.0%
!!! ATGAAAGATTTTGAAATGAT+TGG + chr2.4:45889368-45889387 MS.gene070139:intron 20.0%
!!! CTAGATTGAAATTTGATTTT+CGG + chr2.4:45888692-45888711 MS.gene070139:intron 20.0%
!!! CTTTCTAACTTTTAAAAAAC+AGG - chr2.4:45890696-45890715 None:intergenic 20.0%
!!! GATTTTGATGTAATACTTTA+TGG + chr2.4:45889566-45889585 MS.gene070139:intron 20.0%
!!! GTTTTTTAATCTAGTTTTCT+GGG + chr2.4:45889080-45889099 MS.gene070139:intron 20.0%
!!! TAATGATTTGGATAGAAATA+TGG + chr2.4:45890249-45890268 MS.gene070139:intron 20.0%
!!! TGTTTTTTAATCTAGTTTTC+TGG + chr2.4:45889079-45889098 MS.gene070139:intron 20.0%
!!! TTTGGTTTTGTTATTTCTTA+TGG + chr2.4:45889244-45889263 MS.gene070139:intron 20.0%
! AAACAAAATGTCATTGTAGA+TGG - chr2.4:45890537-45890556 None:intergenic 25.0%
! AAATATTATCTCGCAAATAG+AGG - chr2.4:45888723-45888742 None:intergenic 25.0%
! AAGAAATCACAAAAAGTAGA+AGG - chr2.4:45888176-45888195 None:intergenic 25.0%
! AATCTAGTGAATATAGCAAT+AGG - chr2.4:45888835-45888854 None:intergenic 25.0%
! AGATCTAGAGATTAATGATT+TGG + chr2.4:45890237-45890256 MS.gene070139:intron 25.0%
! ATATGACCTTAATAGAAACA+AGG - chr2.4:45888484-45888503 None:intergenic 25.0%
! CAAAGTGATAGGATTATTTA+TGG + chr2.4:45888557-45888576 MS.gene070139:intron 25.0%
! CCTAAAAAATTGAAAAGAGA+AGG + chr2.4:45889757-45889776 MS.gene070139:intron 25.0%
! GAGAATCATTTAGTTAGTTA+TGG + chr2.4:45889970-45889989 MS.gene070139:intron 25.0%
! GTAAGGCAACAATAAATTAT+TGG - chr2.4:45888637-45888656 None:intergenic 25.0%
! TAGTTAAAGATTAATAAGGC+CGG - chr2.4:45888675-45888694 None:intergenic 25.0%
! TATGATATAGGTAGAAACTA+AGG - chr2.4:45888753-45888772 None:intergenic 25.0%
! TTACTGATAATAACTACAGT+TGG + chr2.4:45890090-45890109 MS.gene070139:intron 25.0%
! TTAGTTTCTACCTATATCAT+AGG + chr2.4:45888752-45888771 MS.gene070139:intron 25.0%
! TTATTATCAGTAAAGCTACA+AGG - chr2.4:45890083-45890102 None:intergenic 25.0%
! TTCGATCTGCAATATAAATA+TGG - chr2.4:45888879-45888898 None:intergenic 25.0%
! TTTCATATTACTTGCCAAAA+TGG - chr2.4:45889354-45889373 None:intergenic 25.0%
!! ATGAGACTTTTCAAATTTCT+AGG - chr2.4:45889725-45889744 None:intergenic 25.0%
!! CCTTCTCTTTTCAATTTTTT+AGG - chr2.4:45889760-45889779 None:intergenic 25.0%
!! TAATATGGTTTTTCATGGAA+AGG - chr2.4:45890375-45890394 None:intergenic 25.0%
!! TCATAAGACTGATAATTTTC+AGG - chr2.4:45889163-45889182 None:intergenic 25.0%
!!! ATAGAACCTTGTTTCTATTA+AGG + chr2.4:45888475-45888494 MS.gene070139:CDS 25.0%
!!! GAATTTCAATTTTGAAGACA+TGG + chr2.4:45888218-45888237 MS.gene070139:intron 25.0%
!!! GTTTTAAAAGATAGCAATGT+AGG + chr2.4:45889048-45889067 MS.gene070139:intron 25.0%
!!! TTCAATTTTTTAGGTTTGCA+TGG - chr2.4:45889751-45889770 None:intergenic 25.0%
!!! TTTAATTTGATTATGCTTGC+AGG + chr2.4:45890719-45890738 MS.gene070139:intron 25.0%
AAAAAGGACAGCATGATTTA+TGG - chr2.4:45890469-45890488 None:intergenic 30.0%
AACACAAATGGAAAAAAACG+AGG - chr2.4:45890410-45890429 None:intergenic 30.0%
AAGCAGTAATAAAGTTCGTT+AGG - chr2.4:45890040-45890059 None:intergenic 30.0%
ACACAAATGGAAAAAAACGA+GGG - chr2.4:45890409-45890428 None:intergenic 30.0%
AGAAGTAAAGAATATCTCAC+AGG + chr2.4:45890604-45890623 MS.gene070139:CDS 30.0%
AGATTCAAAACGAAGAATCT+CGG - chr2.4:45888092-45888111 None:intergenic 30.0%
CATGAAAAACCATATTAGAG+AGG + chr2.4:45890378-45890397 MS.gene070139:intron 30.0%
CATTTAGCATCATCCTAATT+TGG - chr2.4:45889547-45889566 None:intergenic 30.0%
CCAAAAAGGACAACTAATAA+TGG - chr2.4:45889229-45889248 None:intergenic 30.0%
GATGTAATACTTTATGGTGA+TGG + chr2.4:45889572-45889591 MS.gene070139:intron 30.0%
TATGTTATGTCTTTGACACT+AGG + chr2.4:45890490-45890509 MS.gene070139:intron 30.0%
TCAAAATTAAGCACAACCAA+AGG - chr2.4:45889638-45889657 None:intergenic 30.0%
TCAGAATCTTTCATTAACCA+TGG + chr2.4:45889696-45889715 MS.gene070139:intron 30.0%
TGAAGGAAAAAATGTTGATG+TGG + chr2.4:45889875-45889894 MS.gene070139:intron 30.0%
TTGGATATGAAGAAGATAGT+GGG + chr2.4:45889939-45889958 MS.gene070139:intron 30.0%
TTTGGATATGAAGAAGATAG+TGG + chr2.4:45889938-45889957 MS.gene070139:intron 30.0%
! AAACTTTTCACTGAAAGGTA+AGG + chr2.4:45888959-45888978 MS.gene070139:intron 30.0%
! AGCTATCTTTTACAACACAT+TGG - chr2.4:45888989-45889008 None:intergenic 30.0%
! ATGTGTTTTTCTCCTTTTAC+AGG + chr2.4:45888380-45888399 MS.gene070139:intron 30.0%
! CCATTATTAGTTGTCCTTTT+TGG + chr2.4:45889226-45889245 MS.gene070139:intron 30.0%
! CTCTCTAATATGGTTTTTCA+TGG - chr2.4:45890380-45890399 None:intergenic 30.0%
! GAATGTAAAAGTGACTTTTG+AGG - chr2.4:45889678-45889697 None:intergenic 30.0%
! GTAACCTTTCATTGATGTTT+TGG + chr2.4:45888327-45888346 MS.gene070139:intron 30.0%
! TCCAAAGTTCTTGAGTTTTT+CGG - chr2.4:45888919-45888938 None:intergenic 30.0%
! TTCAAATTTCTAGGTTTCCA+TGG - chr2.4:45889716-45889735 None:intergenic 30.0%
! TTTTCTCTCTTGCTAATTGA+GGG + chr2.4:45890428-45890447 MS.gene070139:intron 30.0%
!!! GTTTCTCTTCTAGTTTTTCT+AGG - chr2.4:45890208-45890227 None:intergenic 30.0%
AAAGGTCATTAAGTGCTTAC+AGG - chr2.4:45889620-45889639 None:intergenic 35.0%
AACATCAGTGGTTGAAATCA+AGG - chr2.4:45888029-45888048 None:intergenic 35.0%
AAGAAACATAAGAAGGGTGA+AGG + chr2.4:45889858-45889877 MS.gene070139:intron 35.0%
AAGGTCATTAAGTGCTTACA+GGG - chr2.4:45889619-45889638 None:intergenic 35.0%
ACAAAACAAACGTGTCTAGT+CGG - chr2.4:45890582-45890601 None:intergenic 35.0%
ACAATCTGTCATTAGTGAAG+AGG + chr2.4:45889186-45889205 MS.gene070139:CDS 35.0%
ACAGGAATTCAACTTGAAGA+TGG + chr2.4:45890622-45890641 MS.gene070139:CDS 35.0%
ACCACCAAAACATCAATGAA+AGG - chr2.4:45888334-45888353 None:intergenic 35.0%
ACTTTATTACTGCTTGCAAC+TGG + chr2.4:45890045-45890064 MS.gene070139:intron 35.0%
AGATGGATCATTTCTGTGAT+GGG + chr2.4:45889905-45889924 MS.gene070139:intron 35.0%
AGCAAGAGAGAAAACACAAA+TGG - chr2.4:45890422-45890441 None:intergenic 35.0%
AGGAGAAAAAAATTCATGCG+AGG - chr2.4:45890676-45890695 None:intergenic 35.0%
ATAAAACCACTTGTAGAGAG+TGG + chr2.4:45890796-45890815 MS.gene070139:CDS 35.0%
ATTAGTGAAGAGGATGACAT+GGG + chr2.4:45889196-45889215 MS.gene070139:CDS 35.0%
ATTCAAAACGAAGAATCTCG+GGG - chr2.4:45888090-45888109 None:intergenic 35.0%
CAAAGGACAGATTGAATTGA+TGG + chr2.4:45888129-45888148 MS.gene070139:CDS 35.0%
CAAATGAAGTAAAGGACATC+AGG - chr2.4:45890766-45890785 None:intergenic 35.0%
CATCCTTCCATTACCAAATT+AGG + chr2.4:45889531-45889550 MS.gene070139:intron 35.0%
GATACAGAGATACAGAAAGA+GGG - chr2.4:45888443-45888462 None:intergenic 35.0%
GATATAGGTAGAAACTAAGG+TGG - chr2.4:45888750-45888769 None:intergenic 35.0%
GATTCAAAACGAAGAATCTC+GGG - chr2.4:45888091-45888110 None:intergenic 35.0%
GCATCATCCTAATTTGGTAA+TGG - chr2.4:45889541-45889560 None:intergenic 35.0%
TAAAACCACTTGTAGAGAGT+GGG + chr2.4:45890797-45890816 MS.gene070139:CDS 35.0%
TCCGAAAAACTCAAGAACTT+TGG + chr2.4:45888915-45888934 MS.gene070139:CDS 35.0%
TGATACAGAGATACAGAAAG+AGG - chr2.4:45888444-45888463 None:intergenic 35.0%
TGGTATTTGATAGAACAGTC+TGG + chr2.4:45890269-45890288 MS.gene070139:intron 35.0%
TGTAAGCACTTAATGACCTT+TGG + chr2.4:45889619-45889638 MS.gene070139:intron 35.0%
TTAAAGTGCATGAATCCCTT+AGG + chr2.4:45889503-45889522 MS.gene070139:intron 35.0%
TTACCCTCAAGTATTAACAC+CGG + chr2.4:45888653-45888672 MS.gene070139:intron 35.0%
TTCTGTATCTCTGTATCAGA+TGG + chr2.4:45888446-45888465 MS.gene070139:CDS 35.0%
! ACGAGAAACTTTTCACTGAA+AGG + chr2.4:45888954-45888973 MS.gene070139:CDS 35.0%
! GCTTTTACACTCAAAGTGAT+AGG + chr2.4:45888546-45888565 MS.gene070139:intron 35.0%
! GTTTTCTCTCTTGCTAATTG+AGG + chr2.4:45890427-45890446 MS.gene070139:intron 35.0%
!! AACTTTGGAACAGACTTTCT+AGG + chr2.4:45888930-45888949 MS.gene070139:CDS 35.0%
!! AAGAAGATAGTGGGATATCT+TGG + chr2.4:45889948-45889967 MS.gene070139:intron 35.0%
!! ACCTTTCATTGATGTTTTGG+TGG + chr2.4:45888330-45888349 MS.gene070139:intron 35.0%
!! ACTTTGGAACAGACTTTCTA+GGG + chr2.4:45888931-45888950 MS.gene070139:CDS 35.0%
!! CATCCTAATTTGGTAATGGA+AGG - chr2.4:45889537-45889556 None:intergenic 35.0%
!! GTGATGGGTTCTGTTATATT+TGG + chr2.4:45889920-45889939 MS.gene070139:intron 35.0%
AAAACAAACGTGTCTAGTCG+GGG - chr2.4:45890580-45890599 None:intergenic 40.0%
AGATAGCAATGTAGGCTACT+TGG + chr2.4:45889056-45889075 MS.gene070139:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG + chr2.4:45890150-45890169 MS.gene070139:intron 40.0%
AGTCAAATCACTAGAGGTAG+AGG + chr2.4:45890178-45890197 MS.gene070139:intron 40.0%
AGTCCTAGACAGACACAAAA+TGG - chr2.4:45889271-45889290 None:intergenic 40.0%
ATTCAATCTGTCCTTTGACG+CGG - chr2.4:45888126-45888145 None:intergenic 40.0%
CAAAACAAACGTGTCTAGTC+GGG - chr2.4:45890581-45890600 None:intergenic 40.0%
CATTAGTGAAGAGGATGACA+TGG + chr2.4:45889195-45889214 MS.gene070139:CDS 40.0%
CCACAGTTTCTTCCTGTAAA+AGG - chr2.4:45888395-45888414 None:intergenic 40.0%
CTTGGAATAAGCTTAGCACT+GGG + chr2.4:45890009-45890028 MS.gene070139:intron 40.0%
GAGATGGATCATTTCTGTGA+TGG + chr2.4:45889904-45889923 MS.gene070139:intron 40.0%
GATAATTGCCTGTCATCAAC+AGG - chr2.4:45890649-45890668 None:intergenic 40.0%
GGTGTTAATACTTGAGGGTA+AGG - chr2.4:45888654-45888673 None:intergenic 40.0%
GTAGATGGTTCGTTTATGTC+AGG - chr2.4:45890522-45890541 None:intergenic 40.0%
GTGGAAGAGAAATTGTCTGT+TGG + chr2.4:45888411-45888430 MS.gene070139:CDS 40.0%
TCCTGAAGGTAATCAGTCAT+AGG + chr2.4:45888517-45888536 MS.gene070139:intron 40.0%
TCTCTTGCTAATTGAGGGTT+TGG + chr2.4:45890433-45890452 MS.gene070139:intron 40.0%
TCTTGGAATAAGCTTAGCAC+TGG + chr2.4:45890008-45890027 MS.gene070139:intron 40.0%
TTCAAAACGAAGAATCTCGG+GGG - chr2.4:45888089-45888108 None:intergenic 40.0%
! ATTTTCCCACTCTCTACAAG+TGG - chr2.4:45890805-45890824 None:intergenic 40.0%
! CATGTGCTAACTGCACATTT+TGG - chr2.4:45889802-45889821 None:intergenic 40.0%
! CCTTTTACAGGAAGAAACTG+TGG + chr2.4:45888392-45888411 MS.gene070139:intron 40.0%
!! GTTCTTGAGTTTTTCGGATG+TGG - chr2.4:45888913-45888932 None:intergenic 40.0%
!!! TAATCTAGTTTTCTGGGTGC+AGG + chr2.4:45889086-45889105 MS.gene070139:intron 40.0%
AAGGAGAGTAGATCAGATGG+AGG + chr2.4:45890153-45890172 MS.gene070139:intron 45.0%
ACATAAACTCTCCACACCGT+AGG - chr2.4:45889837-45889856 None:intergenic 45.0%
ACTAAGTGGAGTTGGCTACA+TGG - chr2.4:45890306-45890325 None:intergenic 45.0%
AGGAGAGTAGATCAGATGGA+GGG + chr2.4:45890154-45890173 MS.gene070139:intron 45.0%
AGGGAGAAGCCTCTCTAATA+TGG - chr2.4:45890390-45890409 None:intergenic 45.0%
ATGGAAGGATGAACAGCCTA+AGG - chr2.4:45889522-45889541 None:intergenic 45.0%
ATGGGTTCAAGATCTACGGA+AGG + chr2.4:45887971-45887990 MS.gene070139:CDS 45.0%
ATGTAGCCAACTCCACTTAG+TGG + chr2.4:45890305-45890324 MS.gene070139:intron 45.0%
CAACTCCACTTAGTGGGATA+AGG + chr2.4:45890312-45890331 MS.gene070139:intron 45.0%
CATGAGCTGCCTAAAACCTA+CGG + chr2.4:45889818-45889837 MS.gene070139:intron 45.0%
CTTATCCCACTAAGTGGAGT+TGG - chr2.4:45890314-45890333 None:intergenic 45.0%
CTTGAGAAGCTCAACATCAG+TGG - chr2.4:45888041-45888060 None:intergenic 45.0%
GACTGATTACCTTCAGGATG+CGG - chr2.4:45888515-45888534 None:intergenic 45.0%
GATTTGATCAACCGCGTCAA+AGG + chr2.4:45888112-45888131 MS.gene070139:CDS 45.0%
GCCTATGACTGATTACCTTC+AGG - chr2.4:45888521-45888540 None:intergenic 45.0%
TCATGTAAAGAGAAGACCCG+CGG + chr2.4:45890120-45890139 MS.gene070139:intron 45.0%
TCTCCTTACTACAGAATCCG+CGG - chr2.4:45890140-45890159 None:intergenic 45.0%
TGCTCTCTAGATGTTCCTTC+AGG - chr2.4:45889123-45889142 None:intergenic 45.0%
TGGAAGGATGAACAGCCTAA+GGG - chr2.4:45889521-45889540 None:intergenic 45.0%
TGTAGCCAACTCCACTTAGT+GGG + chr2.4:45890306-45890325 MS.gene070139:intron 45.0%
! AAGGCCGGTGTTAATACTTG+AGG - chr2.4:45888660-45888679 None:intergenic 45.0%
! AAGGGGCTAAATGAGAGTGT+GGG + chr2.4:45889776-45889795 MS.gene070139:intron 45.0%
! AGGCCGGTGTTAATACTTGA+GGG - chr2.4:45888659-45888678 None:intergenic 45.0%
! CTAAGCCTTATCCCACTAAG+TGG - chr2.4:45890320-45890339 None:intergenic 45.0%
! GGACCATTTTGTGTCTGTCT+AGG + chr2.4:45889265-45889284 MS.gene070139:intron 45.0%
! TTGTGTCTGTCTAGGACTGT+AGG + chr2.4:45889273-45889292 MS.gene070139:intron 45.0%
!! AAGATGGACCTGTTGATGAC+AGG + chr2.4:45890638-45890657 MS.gene070139:CDS 45.0%
CAGGTCGAAGCTGTTTGAGA+TGG + chr2.4:45890738-45890757 MS.gene070139:intron 50.0%
CTCCTTACTACAGAATCCGC+GGG - chr2.4:45890139-45890158 None:intergenic 50.0%
GAAGGGGCTAAATGAGAGTG+TGG + chr2.4:45889775-45889794 MS.gene070139:intron 50.0%
GAGGGGAGTCAAATCACTAG+AGG + chr2.4:45890172-45890191 MS.gene070139:intron 50.0%
GGAGAGTAGATCAGATGGAG+GGG + chr2.4:45890155-45890174 MS.gene070139:intron 50.0%
GTTGATGTGGCAGAGAGAGA+TGG + chr2.4:45889888-45889907 MS.gene070139:intron 50.0%
TTACCTTCAGGATGCGGATG+CGG - chr2.4:45888509-45888528 None:intergenic 50.0%
TTGAGCTTCTCAAGCGAGCA+TGG + chr2.4:45888047-45888066 MS.gene070139:CDS 50.0%
! CTCTCCACACCGTAGGTTTT+AGG - chr2.4:45889830-45889849 None:intergenic 50.0%
!! GGGAAGAGAGCATCTGTTCT+TGG + chr2.4:45889991-45890010 MS.gene070139:intron 50.0%
CAGGTGCACAGATGACCTGA+AGG + chr2.4:45889105-45889124 MS.gene070139:intron 55.0%
GACCCGCGGATTCTGTAGTA+AGG + chr2.4:45890134-45890153 MS.gene070139:intron 55.0%
GCGAGCATGGCGTAACGAAA+AGG + chr2.4:45888060-45888079 MS.gene070139:CDS 55.0%
GCTGCCTAAAACCTACGGTG+TGG + chr2.4:45889823-45889842 MS.gene070139:intron 55.0%
AACGTGTCTAGTCGGGGTGC+TGG - chr2.4:45890574-45890593 None:intergenic 60.0%
TCTCCGCATCCGCATCCTGA+AGG + chr2.4:45888503-45888522 MS.gene070139:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 45887971 45890837 45887971 ID=MS.gene070139
chr2.4 mRNA 45887971 45890837 45887971 ID=MS.gene070139.t1;Parent=MS.gene070139
chr2.4 exon 45887971 45888168 45887971 ID=MS.gene070139.t1.exon1;Parent=MS.gene070139.t1
chr2.4 CDS 45887971 45888168 45887971 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
chr2.4 exon 45888402 45888524 45888402 ID=MS.gene070139.t1.exon2;Parent=MS.gene070139.t1
chr2.4 CDS 45888402 45888524 45888402 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
chr2.4 exon 45888893 45888975 45888893 ID=MS.gene070139.t1.exon3;Parent=MS.gene070139.t1
chr2.4 CDS 45888893 45888975 45888893 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
chr2.4 exon 45889108 45889217 45889108 ID=MS.gene070139.t1.exon4;Parent=MS.gene070139.t1
chr2.4 CDS 45889108 45889217 45889108 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
chr2.4 exon 45890569 45890659 45890569 ID=MS.gene070139.t1.exon5;Parent=MS.gene070139.t1
chr2.4 CDS 45890569 45890659 45890569 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
chr2.4 exon 45890741 45890837 45890741 ID=MS.gene070139.t1.exon6;Parent=MS.gene070139.t1
chr2.4 CDS 45890741 45890837 45890741 ID=cds.MS.gene070139.t1;Parent=MS.gene070139.t1
Gene Sequence

>MS.gene070139

ATGGGTTCAAGATCTACGGAAGGAGAACAATCATCGCTCGCTGACGATTATGATGCCTTGATTTCAACCACTGATGTTGAGCTTCTCAAGCGAGCATGGCGTAACGAAAAGGCAGCCCCCGAGATTCTTCGTTTTGAATCTGATTTGATCAACCGCGTCAAAGGACAGATTGAATTGATGGCAACGTTTCGAAAACTTGTTACCTTCTACTTTTTGTGATTTCTTATGATAGCTTACCAACTGAAATGAATTTCAATTTTGAAGACATGGATATTAAGTTCAAGTTTTTTTTTTATAAAAAATATTGAACTGAGAAAAGAAACTTAAATTTCTTATTGTCGGTTTTTCATTCATTAGTAACCTTTCATTGATGTTTTGGTGGTTTTCCTAGTTACTTCACATTTAATAAATGTGTTTTTCTCCTTTTACAGGAAGAAACTGTGGAAGAGAAATTGTCTGTTGGTAGCGACCCTCTTTCTGTATCTCTGTATCAGATGGACTTAGATAGAACCTTGTTTCTATTAAGGTCATATCTCCGCATCCGCATCCTGAAGGTAATCAGTCATAGGCTTTTAGCTTTTACACTCAAAGTGATAGGATTATTTATGGGTGTTTACTGTTAAGTCTAAATTAGTTCATTTGATAGAAATTAAGAAAAACAAACCAATAATTTATTGTTGCCTTACCCTCAAGTATTAACACCGGCCTTATTAATCTTTAACTAGATTGAAATTTGATTTTCGGTATAGCCTCTATTTGCGAGATAATATTTTTTACCACCTTAGTTTCTACCTATATCATAGGTTTTATGTAATTAAGATACACATTAATTGTTGAAATATTTGAATACTGGTAGCATGTCCTATTGCTATATTCACTAGATTGCTTTTTGTTTAATTTTACAACCATATTTATATTGCAGATCGAAAAGTACATGTTCCACATCCGAAAAACTCAAGAACTTTGGAACAGACTTTCTAGGGACGAGAAACTTTTCACTGAAAGGTAAGGCTATCCAATGTGTTGTAAAAGATAGCTCAATGTGTTTTAACAAGAAATTTTTCTGACTATCAATGTGTTTTAAAAGATAGCAATGTAGGCTACTTGGTGTTTTTTAATCTAGTTTTCTGGGTGCAGGTGCACAGATGACCTGAAGGAACATCTAGAGAGCAGTGTTCTATCAAAACTACCTGAAAATTATCAGTCTTATGAGAGACAATCTGTCATTAGTGAAGAGGATGACATGGGTAATTTACCATTATTAGTTGTCCTTTTTGGTTTTGTTATTTCTTATGGACCATTTTGTGTCTGTCTAGGACTGTAGGTATTCAAATCTGATTTTTCTGAAATCAGTCTGTTATGAGAGAAAATTTCTTGTTACCATTTTGGCAAGTAATATGAAAGATTTTGAAATGATTGGATTGAATGAATTAAACTCAAAGTATGATGATCAATTCTGTAGCACTATTTTTTCAACATTTTATAAACTTCATGCTTTGTAGCTTTCTTTGCATATTTGATTTGAAGTTGTTTTAAAGTGCATGAATCCCTTAGGCTGTTCATCCTTCCATTACCAAATTAGGATGATGCTAAATGATTTTGATGTAATACTTTATGGTGATGGCTATAGAGATTATTTTTATATCCCTGTAAGCACTTAATGACCTTTGGTTGTGCTTAATTTTGAATATTTTGATAGCTAATCCTCAAAAGTCACTTTTACATTCAGAATCTTTCATTAACCATGGAAACCTAGAAATTTGAAAAGTCTCATTAACCATGCAAACCTAAAAAATTGAAAAGAGAAGGGGCTAAATGAGAGTGTGGGCCAAAATGTGCAGTTAGCACATGAGCTGCCTAAAACCTACGGTGTGGAGAGTTTATGTTAAGAAACATAAGAAGGGTGAAGGAAAAAATGTTGATGTGGCAGAGAGAGATGGATCATTTCTGTGATGGGTTCTGTTATATTTGGATATGAAGAAGATAGTGGGATATCTTGGAGAATCATTTAGTTAGTTATGGGAAGAGAGCATCTGTTCTTGGAATAAGCTTAGCACTGGGCAACACCTAACGAACTTTATTACTGCTTGCAACTGGTTATTTTATAAACCTTGTAGCTTTACTGATAATAACTACAGTTGGACACAAGTCATGTAAAGAGAAGACCCGCGGATTCTGTAGTAAGGAGAGTAGATCAGATGGAGGGGAGTCAAATCACTAGAGGTAGAGGAAGACCTAGAAAAACTAGAAGAGAAACTATTGAGAAAGATCTAGAGATTAATGATTTGGATAGAAATATGGTATTTGATAGAACAGTCTGGCGTCGTTTAATCCATGTAGCCAACTCCACTTAGTGGGATAAGGCTTAGTTGTTGCGCGTGCATTTAAATTATTGTAGATTCCTTTCCATGAAAAACCATATTAGAGAGGCTTCTCCCTCGTTTTTTTCCATTTGTGTTTTCTCTCTTGCTAATTGAGGGTTTGGATCTGCTTTACCATAAATCATGCTGTCCTTTTTATATGTTATGTCTTTGACACTAGGATGTCTCCTGACATAAACGAACCATCTACAATGACATTTTGTTTTGAATGTTTCAGTTCCAGCACCCCGACTAGACACGTTTGTTTTGTGTAGAAGTAAAGAATATCTCACAGGAATTCAACTTGAAGATGGACCTGTTGATGACAGGCAATTATCTTTTCCTCGCATGAATTTTTTTCTCCTGTTTTTTAAAAGTTAGAAAGCTGTTTAATTTGATTATGCTTGCAGGTCGAAGCTGTTTGAGATGGAGCCTGATGTCCTTTACTTCATTTGTTACAAATCGATAAAACCACTTGTAGAGAGTGGGAAAATTGATCTACTATGA
Protein sequence

>MS.gene070139.t1

MGSRSTEGEQSSLADDYDALISTTDVELLKRAWRNEKAAPEILRFESDLINRVKGQIELMATFRKLEETVEEKLSVGSDPLSVSLYQMDLDRTLFLLRSYLRIRILKIEKYMFHIRKTQELWNRLSRDEKLFTERCTDDLKEHLESSVLSKLPENYQSYERQSVISEEDDMVPAPRLDTFVLCRSKEYLTGIQLEDGPVDDRSKLFEMEPDVLYFICYKSIKPLVESGKIDLL