AlfalfaGEDB | MS.gene035374

M. sativa cultivar XinJiangDaYe / MS.gene035374

KEGG: -
GO: -
PFAM: PF13639.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035374.t1	XP_013458268.1	81.6	282	38	3	4	281	1	272	9.00E-104	386.7

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035374.t1	Q8L9T5	47.3	220	94	7	72	273	78	293	3.9e-39	163.3

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035374.t1	A0A072UR51	81.6	282	38	3	4	281	1	272	6.5e-104	386.7

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene009458	MS.gene035374	PPI
MS.gene51627	MS.gene035374	PPI
MS.gene56256	MS.gene035374	PPI
MS.gene63514	MS.gene035374	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035374.t1	MTR_4g120270	89.007	282	17	3	4	281	1	272	4.16e-166	461
MS.gene035374.t1	MTR_2g436100	53.150	254	94	10	18	263	27	263	4.41e-72	223
MS.gene035374.t1	MTR_8g023400	40.201	199	95	6	16	208	21	201	5.26e-36	131
MS.gene035374.t1	MTR_7g117540	45.455	143	64	3	20	161	20	149	3.84e-31	117
MS.gene035374.t1	MTR_3g464780	53.012	83	33	1	82	158	95	177	4.21e-27	106
MS.gene035374.t1	MTR_6g087150	45.385	130	59	4	34	158	42	164	1.24e-25	104
MS.gene035374.t1	MTR_3g110190	40.580	138	68	3	34	164	13	143	2.87e-25	103
MS.gene035374.t1	MTR_2g090950	38.636	176	87	4	20	186	30	193	5.99e-25	100
MS.gene035374.t1	MTR_7g108855	43.182	132	62	3	90	217	67	189	1.81e-24	97.8
MS.gene035374.t1	MTR_8g089880	41.401	157	71	6	89	237	127	270	4.71e-24	98.6

Showing 1 to 10 of 116 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035374.t1	AT3G16720	48.208	307	122	13	4	278	1	302	8.74e-66	207
MS.gene035374.t1	AT3G62690	45.890	146	71	3	18	161	22	161	1.65e-35	128
MS.gene035374.t1	AT4G15975	45.333	150	63	6	42	188	18	151	9.42e-35	125
MS.gene035374.t1	AT2G47560	34.959	246	114	7	16	254	20	226	4.11e-34	124
MS.gene035374.t1	AT1G72310	39.535	172	75	6	20	170	20	183	9.41e-30	114
MS.gene035374.t1	AT2G42360	31.923	260	118	8	3	257	10	215	2.97e-29	111
MS.gene035374.t1	AT1G53820	41.060	151	68	4	22	158	22	165	3.29e-28	110
MS.gene035374.t1	AT5G43420	36.538	156	71	4	19	158	40	183	1.55e-24	101
MS.gene035374.t1	AT4G40070	46.078	102	39	2	89	174	95	196	3.27e-24	100
MS.gene035374.t1	AT1G72200	34.158	202	110	7	35	227	66	253	4.13e-24	100

Showing 1 to 10 of 109 entries

Previous1 2 3 4 5…11Next

Find 0 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGGAGGAAAATTTGAAAACT+GGG	-	32556:11349-11368	None:intergenic	30.0%
TTCAAACTCCGATAAACAAA+CGG	-	32556:11396-11415	None:intergenic	30.0%
TTGGAGGAAAATTTGAAAAC+TGG	-	32556:11350-11369	None:intergenic	30.0%
AAAAGATGAAAGGTTGACGA+CGG	-	32556:11250-11269	None:intergenic	35.0%
GAACAAGACGAAGAAAATTC+CGG	-	32556:11635-11654	None:intergenic	35.0%
GTCTCAAATGAATTCGAACA+TGG	+	32556:11055-11074	MS.gene035374:CDS	35.0%
TGTTTATCGGAGTTTGAAGA+TGG	+	32556:11398-11417	MS.gene035374:CDS	35.0%
AAGAAAATTCCGGTTCAGAC+CGG	-	32556:11625-11644	None:intergenic	40.0%
GAAAACAACTATGCACTCAG+CGG	+	32556:11095-11114	MS.gene035374:CDS	40.0%
GACAATTGATGTGTGTGAAC+CGG	+	32556:11562-11581	MS.gene035374:CDS	40.0%

Showing 1 to 10 of 83 entries

Previous1 2 3 4 5…9Next

Chromosome	Type	Strat	End	Strand	Name
32556	gene	11053	11898	11053	ID=MS.gene035374
32556	mRNA	11053	11898	11053	ID=MS.gene035374.t1;Parent=MS.gene035374
32556	exon	11053	11898	11053	ID=MS.gene035374.t1.exon1;Parent=MS.gene035374.t1
32556	CDS	11053	11898	11053	ID=cds.MS.gene035374.t1;Parent=MS.gene035374.t1

Gene Sequence

>MS.gene035374

ATGTCTCAAATGAATTCGAACATGGAGAATGAAAGAGAAATCGAAAACAACTATGCACTCAGCGGCAAGATAATGCTAACCGCCATTATCATCCTCTTCGCCGTTATCATAATAATGCTCTGTCTCCATTTCCTAATTCGATACTACCTTCTACGTGATCGCACACGTCAACACCTCCGCCGTAACCGCCGTCTCCGTCGTCAACCTTTCATCTTTTACGTGGACCCGTCTGCCCCTGCTTCACTGACACTCGCCGTCTCTCGGGGCCTTGATGCCTCCGTGATCTCGTCGCTCCCAGTTTTCAAATTTTCCTCCAAGACGGATCAGGTGGTGGAATGCGCCGTTTGTTTATCGGAGTTTGAAGATGGAGAAACGGGTCGGGTTTTACCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACATGTCCGCTTTGTAGAGCGCCCGTGGAAGCTGCGCCGGTTCAAGCGACCAGACAAGAAGTGACAATTGATGTGTGTGAACCGGAACTTGTTTTGGGTTCGAGTTCTGGTGATGAAATGAACCGGTCTGAACCGGAATTTTCTTCGTCTTGTTCTAATGAGAAGCAATCTTCATTTGTTGACATTACCATTGAGATTCCGAGAAGGAGTGAATCCGATGGCAAGAGCTTTGCCGTGGGAGAGTCGAGTTGTGATTCACCATCATCTTTTCGGTCGCCAATGAGTCGTGTGTTGTCGTTCACGAGAATCCTTAGCAGAGAAAGGAAACCAAGCATTTCTCCGTCGTTGGATTGTGCCGCAGATACTGCAGAACGAGGTGAAAAGGAGGAGACTCAGTGA

Protein sequence

>MS.gene035374.t1

MSQMNSNMENEREIENNYALSGKIMLTAIIILFAVIIIMLCLHFLIRYYLLRDRTRQHLRRNRRLRRQPFIFYVDPSAPASLTLAVSRGLDASVISSLPVFKFSSKTDQVVECAVCLSEFEDGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEAAPVQATRQEVTIDVCEPELVLGSSSGDEMNRSEPEFSSSCSNEKQSSFVDITIEIPRRSESDGKSFAVGESSCDSPSSFRSPMSRVLSFTRILSRERKPSISPSLDCAADTAERGEKEETQ