Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035509.t1 | XP_013467478.1 | 96.3 | 1204 | 37 | 1 | 1 | 1197 | 1 | 1204 | 0.00E+00 | 1819.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035509.t1 | Q56YN8 | 68.9 | 1203 | 366 | 2 | 1 | 1195 | 1 | 1203 | 0.0e+00 | 1324.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035509.t1 | A0A072VIT6 | 96.3 | 1204 | 37 | 1 | 1 | 1197 | 25 | 1228 | 0.0e+00 | 1819.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95250 | MS.gene035509 | PPI |
| MS.gene058789 | MS.gene035509 | PPI |
| MS.gene056169 | MS.gene035509 | PPI |
| MS.gene45748 | MS.gene035509 | PPI |
| MS.gene036083 | MS.gene035509 | PPI |
| MS.gene024068 | MS.gene035509 | PPI |
| MS.gene016667 | MS.gene035509 | PPI |
| MS.gene033508 | MS.gene035509 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035509.t1 | MTR_1g051825 | 98.256 | 1204 | 14 | 1 | 1 | 1197 | 1 | 1204 | 0.0 | 2406 |
| MS.gene035509.t1 | MTR_1g051825 | 98.256 | 1204 | 14 | 1 | 1 | 1197 | 25 | 1228 | 0.0 | 2405 |
| MS.gene035509.t1 | MTR_3g110058 | 65.172 | 580 | 146 | 6 | 122 | 698 | 1 | 527 | 0.0 | 686 |
| MS.gene035509.t1 | MTR_3g110055 | 70.861 | 453 | 120 | 3 | 696 | 1136 | 2 | 454 | 0.0 | 585 |
| MS.gene035509.t1 | MTR_8g037325 | 24.606 | 1268 | 762 | 44 | 1 | 1176 | 1 | 1166 | 1.07e-65 | 243 |
| MS.gene035509.t1 | MTR_5g086975 | 50.570 | 263 | 56 | 4 | 241 | 503 | 58 | 246 | 8.07e-61 | 210 |
| MS.gene035509.t1 | MTR_8g072890 | 23.386 | 1317 | 777 | 46 | 1 | 1188 | 14 | 1227 | 2.17e-44 | 176 |
| MS.gene035509.t1 | MTR_5g087290 | 67.532 | 77 | 25 | 0 | 427 | 503 | 1 | 77 | 1.85e-27 | 108 |
| MS.gene035509.t1 | MTR_0003s0460 | 23.236 | 822 | 486 | 29 | 404 | 1138 | 383 | 1146 | 4.14e-21 | 100 |
| MS.gene035509.t1 | MTR_1g069910 | 23.121 | 705 | 385 | 31 | 523 | 1138 | 518 | 1154 | 2.01e-18 | 92.0 |
| MS.gene035509.t1 | MTR_7g091430 | 22.777 | 821 | 498 | 30 | 418 | 1167 | 72 | 827 | 6.23e-17 | 87.0 |
| MS.gene035509.t1 | MTR_7g091420 | 25.131 | 382 | 241 | 10 | 1 | 360 | 9 | 367 | 2.80e-15 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035509.t1 | AT2G27170 | 68.106 | 1204 | 376 | 2 | 1 | 1196 | 1 | 1204 | 0.0 | 1625 |
| MS.gene035509.t1 | AT2G27170 | 68.106 | 1204 | 376 | 2 | 1 | 1196 | 1 | 1204 | 0.0 | 1625 |
| MS.gene035509.t1 | AT2G27170 | 66.413 | 1051 | 346 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1389 |
| MS.gene035509.t1 | AT2G27170 | 66.413 | 1051 | 346 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1389 |
| MS.gene035509.t1 | AT3G47460 | 24.860 | 1247 | 782 | 41 | 1 | 1176 | 1 | 1163 | 3.94e-65 | 241 |
| MS.gene035509.t1 | AT3G47460 | 24.800 | 1250 | 782 | 40 | 1 | 1176 | 1 | 1166 | 5.18e-65 | 241 |
| MS.gene035509.t1 | AT5G62410 | 24.860 | 1251 | 780 | 40 | 1 | 1176 | 1 | 1166 | 7.36e-63 | 234 |
| MS.gene035509.t1 | AT5G48600 | 22.745 | 1275 | 795 | 44 | 1 | 1167 | 24 | 1216 | 8.09e-34 | 142 |
| MS.gene035509.t1 | AT5G48600 | 22.828 | 1266 | 808 | 45 | 1 | 1167 | 24 | 1219 | 6.29e-33 | 139 |
| MS.gene035509.t1 | AT3G54670 | 23.022 | 1251 | 743 | 43 | 3 | 1138 | 11 | 1156 | 3.06e-27 | 120 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAACAAGCTTCTCTTTA+AGG | 0.124157 | 1.4:-38624400 | None:intergenic |
| TCTTTAAGGTCTTTGATTTC+AGG | 0.126868 | 1.4:-38624386 | None:intergenic |
| TTGAACTTCTTTGCTAAATA+TGG | 0.172364 | 1.4:-38615467 | None:intergenic |
| CCTTGTTGCACAACATAATA+TGG | 0.190231 | 1.4:-38614990 | None:intergenic |
| TGCAAAACTCAGAACATTTC+TGG | 0.193624 | 1.4:+38620094 | MS.gene035509:CDS |
| AATATTTATTGTTAGAATAA+TGG | 0.223614 | 1.4:+38617572 | MS.gene035509:intron |
| AATCTCGTCAAATAGATAAA+AGG | 0.228063 | 1.4:-38628390 | None:intergenic |
| CAAATTATTCTCCAAATCTT+TGG | 0.239758 | 1.4:-38616936 | None:intergenic |
| GAAATTCAAAGACACCTTCT+TGG | 0.270306 | 1.4:-38624123 | None:intergenic |
| GCAAGTGCTTTAGAAAATAA+TGG | 0.273444 | 1.4:-38624101 | None:intergenic |
| TCTACTCTCCCCTCTGGATT+TGG | 0.277473 | 1.4:-38627875 | None:intergenic |
| ACCTCCCGATAGCTGTTTCA+TGG | 0.309647 | 1.4:-38628309 | None:intergenic |
| CAGTTCAGCAACTCAATAAT+TGG | 0.313860 | 1.4:-38620127 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.317489 | 1.4:+38615156 | MS.gene035509:CDS |
| TGAACTAGATTATCATATAA+AGG | 0.320612 | 1.4:-38617275 | None:intergenic |
| CAGGACGATTGGTTTGAAAA+AGG | 0.325017 | 1.4:+38614751 | MS.gene035509:CDS |
| GAATCAGATTGAACAGCTTA+AGG | 0.325972 | 1.4:+38624274 | MS.gene035509:CDS |
| CTAATCTAACCACTAATCTT+AGG | 0.329155 | 1.4:+38624550 | MS.gene035509:CDS |
| CCACATTAAGGAGGAGGAAT+TGG | 0.330392 | 1.4:+38622792 | MS.gene035509:CDS |
| AACAGTTATCTGCAAGAATC+TGG | 0.344787 | 1.4:+38622528 | MS.gene035509:CDS |
| ACTGTCAGCATTCTGCTTAA+TGG | 0.349206 | 1.4:-38622767 | None:intergenic |
| CTTTAAGGTCTTTGATTTCA+GGG | 0.351655 | 1.4:-38624385 | None:intergenic |
| AAACACCTTAATCAACAAAA+AGG | 0.353161 | 1.4:+38620458 | MS.gene035509:CDS |
| CAGAGTCTTTCATCAAGGTT+AGG | 0.353698 | 1.4:-38615128 | None:intergenic |
| CAGACACAAAATGCTGAATA+AGG | 0.357538 | 1.4:+38629250 | MS.gene035509:CDS |
| TGCTGACAGTATCCACATTA+AGG | 0.368632 | 1.4:+38622780 | MS.gene035509:CDS |
| AAGGGAAGATCTCTGGAAAT+AGG | 0.370840 | 1.4:+38617074 | MS.gene035509:CDS |
| TTCATTCTCTTTGCTCCATA+AGG | 0.371923 | 1.4:-38619618 | None:intergenic |
| AAGTTCCTCCCTCTTGGAAT+TGG | 0.373248 | 1.4:-38624637 | None:intergenic |
| ACAAGAGAAATCCAAAGATT+TGG | 0.376912 | 1.4:+38616925 | MS.gene035509:CDS |
| ATCATCATCATAGATCCTTA+TGG | 0.382267 | 1.4:+38619603 | MS.gene035509:intron |
| AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 1.4:+38629151 | MS.gene035509:CDS |
| TAAAGCAAATATTACTACTT+TGG | 0.391831 | 1.4:+38619404 | MS.gene035509:CDS |
| AGTCTTGATCATGCGATTCC+TGG | 0.395423 | 1.4:+38619692 | MS.gene035509:CDS |
| AACCTCATTATACTTCTTTG+CGG | 0.396057 | 1.4:-38616894 | None:intergenic |
| TGCTCTAGAGTTCATTAATC+AGG | 0.399310 | 1.4:+38629225 | MS.gene035509:CDS |
| AAGGATGAATACTTTCTAGA+TGG | 0.407606 | 1.4:+38614770 | MS.gene035509:CDS |
| TTCTAAAGCACTTGCCAAGA+AGG | 0.422752 | 1.4:+38624109 | MS.gene035509:CDS |
| AGTAGAAAGAGACAGCCTTC+AGG | 0.428009 | 1.4:+38619470 | MS.gene035509:CDS |
| ATCATTAAGTTCCTCCCTCT+TGG | 0.432035 | 1.4:-38624643 | None:intergenic |
| CATAGACATGATACGGCGCC+TGG | 0.437832 | 1.4:+38629075 | MS.gene035509:intron |
| GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 1.4:+38612090 | MS.gene035509:intron |
| AGTATTCTCTGAACTTGTAC+AGG | 0.442344 | 1.4:+38626365 | MS.gene035509:CDS |
| AAAGTATACCAAGAAAATAA+AGG | 0.442810 | 1.4:+38625027 | MS.gene035509:CDS |
| GACTTACAAGGGAAGATCTC+TGG | 0.444139 | 1.4:+38617067 | MS.gene035509:CDS |
| TTGAAAATAATGCAGGATAC+AGG | 0.445527 | 1.4:+38615216 | MS.gene035509:CDS |
| GGAGTATAATAGAAGACATC+AGG | 0.449480 | 1.4:+38624943 | MS.gene035509:CDS |
| TTGAAGTTACAGCAGGAAAC+AGG | 0.452589 | 1.4:+38620173 | MS.gene035509:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.455404 | 1.4:-38620557 | None:intergenic |
| TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 1.4:-38629139 | None:intergenic |
| AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 1.4:+38615176 | MS.gene035509:CDS |
| ATGAATTTACTAGAAAGTGC+TGG | 0.459206 | 1.4:+38614951 | MS.gene035509:CDS |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 1.4:+38622564 | MS.gene035509:CDS |
| TAAAGAATTAGAGCAATTGC+TGG | 0.461497 | 1.4:+38624973 | MS.gene035509:CDS |
| TCAAAAGCATCTGATGTCAA+TGG | 0.463495 | 1.4:-38625058 | None:intergenic |
| TTTCAACATGTTCATTAAGC+AGG | 0.467351 | 1.4:+38610516 | None:intergenic |
| TGAAGCACGGAAAGCAGAGC+TGG | 0.467971 | 1.4:+38624524 | MS.gene035509:CDS |
| AATCAGATTGAACAGCTTAA+GGG | 0.472543 | 1.4:+38624275 | MS.gene035509:CDS |
| ATCTCGTCAAATAGATAAAA+GGG | 0.475350 | 1.4:-38628389 | None:intergenic |
| ATCAAGACGAGGATGGTCCT+CGG | 0.477677 | 1.4:+38627849 | MS.gene035509:CDS |
| GTATGGCAAAGATAAGTGTA+AGG | 0.477924 | 1.4:-38628349 | None:intergenic |
| GCTAAATATGGCATATTCCA+AGG | 0.478359 | 1.4:-38615455 | None:intergenic |
| GGGAGAGTAGAAAAGTACAT+TGG | 0.478684 | 1.4:+38627887 | MS.gene035509:CDS |
| TGACGAGATTGATGCAGCAT+TGG | 0.487759 | 1.4:+38628403 | MS.gene035509:CDS |
| AGATGAAATTAATAAATTGA+AGG | 0.489199 | 1.4:+38624840 | MS.gene035509:CDS |
| GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 1.4:-38620500 | None:intergenic |
| CAAGTTCAGAGAATACTTCT+CGG | 0.493867 | 1.4:-38626359 | None:intergenic |
| GTGCACTTACGCAGGACGAT+TGG | 0.503688 | 1.4:+38614740 | MS.gene035509:CDS |
| AGTCCTAGAGTTAACTGTGT+TGG | 0.504256 | 1.4:+38611011 | MS.gene035509:CDS |
| TCAATAGAGCGCACTTTCAA+AGG | 0.504820 | 1.4:+38626321 | MS.gene035509:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.504851 | 1.4:+38615438 | MS.gene035509:CDS |
| TTTCAACAGCTTATTTCATG+TGG | 0.504980 | 1.4:+38620400 | MS.gene035509:intron |
| CCCTCTGGATTTGGTTCCCG+AGG | 0.506286 | 1.4:-38627866 | None:intergenic |
| CAGAACATTTCTGGAGTTCA+CGG | 0.506346 | 1.4:+38620103 | MS.gene035509:CDS |
| GAATCTGGATGTGGCTTCAA+AGG | 0.507465 | 1.4:+38622543 | MS.gene035509:CDS |
| CAAAAGCATCTGATGTCAAT+GGG | 0.507767 | 1.4:-38625057 | None:intergenic |
| TAGGAGAAGAAAACAAGAGC+TGG | 0.507827 | 1.4:+38624569 | MS.gene035509:CDS |
| CGTCTAAATACTGTACAACT+TGG | 0.508951 | 1.4:-38615360 | None:intergenic |
| CTTGATGTCAAAGACTTACA+AGG | 0.509155 | 1.4:+38617055 | MS.gene035509:CDS |
| GTAAAGCTGCTCGTGATAAG+TGG | 0.513738 | 1.4:+38617655 | MS.gene035509:CDS |
| ACCGCAGTTGAAGTTACAGC+AGG | 0.517048 | 1.4:+38620166 | MS.gene035509:CDS |
| TGCCATACAGAGATGTGATC+CGG | 0.517388 | 1.4:+38628364 | MS.gene035509:CDS |
| CCATATTATGTTGTGCAACA+AGG | 0.523009 | 1.4:+38614990 | MS.gene035509:CDS |
| AGAGTCTTTCATCAAGGTTA+GGG | 0.524684 | 1.4:-38615127 | None:intergenic |
| TCGTGATAAGTGGCTTCAAA+AGG | 0.524706 | 1.4:+38617665 | MS.gene035509:CDS |
| GAAGAGGGTTGAATTCAGTT+CGG | 0.524749 | 1.4:+38620065 | MS.gene035509:CDS |
| TTCTCTCTACAGGAAGGGGC+TGG | 0.525303 | 1.4:+38612431 | MS.gene035509:intron |
| AGCATCAACCTTCTGCTGCT+CGG | 0.526825 | 1.4:-38624009 | None:intergenic |
| TCTGGTTATGATGAAGAAGA+AGG | 0.527345 | 1.4:+38626401 | MS.gene035509:CDS |
| ACCAAGAAAATAAAGGAACT+TGG | 0.531605 | 1.4:+38625034 | MS.gene035509:CDS |
| CCGCTCAGAGTCTTTCATCA+AGG | 0.532089 | 1.4:-38615133 | None:intergenic |
| GATGAAAGACTCTGAGCGGT+TGG | 0.532150 | 1.4:+38615137 | MS.gene035509:CDS |
| CCAATTCCTCCTCCTTAATG+TGG | 0.532876 | 1.4:-38622792 | None:intergenic |
| TTACCAACACAGTTAACTCT+AGG | 0.532980 | 1.4:-38611014 | None:intergenic |
| GGAACTAGACGAGGAGAAAG+AGG | 0.534006 | 1.4:+38615393 | MS.gene035509:CDS |
| CCTCAGTACAGAACTGCTGT+TGG | 0.534499 | 1.4:+38628428 | MS.gene035509:CDS |
| TGCCGGATCACATCTCTGTA+TGG | 0.535228 | 1.4:-38628366 | None:intergenic |
| AAGCTAACCTGACTGAATGC+TGG | 0.536188 | 1.4:-38620596 | None:intergenic |
| GGAAGAGGCTGCAGAACAGT+TGG | 0.536294 | 1.4:+38617199 | MS.gene035509:intron |
| TGACTTTCATAGACATGATA+CGG | 0.538047 | 1.4:+38629068 | MS.gene035509:intron |
| TGAAAGTTTGAAAATAATGC+AGG | 0.538235 | 1.4:+38615209 | MS.gene035509:CDS |
| GTATTTAGACGAGAGGTTGA+AGG | 0.538710 | 1.4:+38615372 | MS.gene035509:CDS |
| TTGGCTGCAGTCTATGGAGG+AGG | 0.540488 | 1.4:+38624922 | MS.gene035509:intron |
| ACAGGAAGGGGCTGGACACT+CGG | 0.547884 | 1.4:+38612439 | MS.gene035509:intron |
| GCACTTTCAAAGGTGTTGCT+AGG | 0.548129 | 1.4:+38626331 | MS.gene035509:CDS |
| CAGTCCATGAAACAGCTATC+GGG | 0.548386 | 1.4:+38628305 | MS.gene035509:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.548754 | 1.4:+38625828 | MS.gene035509:CDS |
| ATTGAGAGCAGAAGTTGAGA+AGG | 0.549014 | 1.4:+38619661 | MS.gene035509:CDS |
| AAAACCTACGCAGTGAGGAT+AGG | 0.550494 | 1.4:+38612295 | MS.gene035509:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 1.4:+38624051 | MS.gene035509:CDS |
| TGAATTTACTAGAAAGTGCT+GGG | 0.556204 | 1.4:+38614952 | MS.gene035509:CDS |
| TTATGTTGTGCAACAAGGAA+AGG | 0.558455 | 1.4:+38614995 | MS.gene035509:CDS |
| TCAAGACGAGGATGGTCCTC+GGG | 0.561921 | 1.4:+38627850 | MS.gene035509:CDS |
| TCAAATAGATAAAAGGGTGC+CGG | 0.563152 | 1.4:-38628383 | None:intergenic |
| CTACACTCCAGCATTCAGTC+AGG | 0.566976 | 1.4:+38620589 | MS.gene035509:CDS |
| TTGGACATGATAGGTTCAAA+CGG | 0.567568 | 1.4:+38625676 | MS.gene035509:intron |
| TAATTGCTATGTCACGTGAA+AGG | 0.568481 | 1.4:+38619433 | MS.gene035509:CDS |
| GAGTGTTTGCTATGTCTGCC+AGG | 0.570912 | 1.4:-38629093 | None:intergenic |
| TGAGCGGTTGGATTTACTGA+AGG | 0.571038 | 1.4:+38615149 | MS.gene035509:CDS |
| CTCTGGAAATAGGCGTGCCA+AGG | 0.572223 | 1.4:+38617084 | MS.gene035509:CDS |
| AGTCACTCCATATATCTTGT+CGG | 0.574755 | 1.4:-38629158 | None:intergenic |
| CAGTATCCACATTAAGGAGG+AGG | 0.575421 | 1.4:+38622786 | MS.gene035509:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 1.4:+38622559 | MS.gene035509:CDS |
| TAATTTGAAAGATATAACTA+AGG | 0.577008 | 1.4:+38616952 | MS.gene035509:CDS |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 1.4:+38622583 | MS.gene035509:CDS |
| ATCACTTAACACAAAACGAA+TGG | 0.580151 | 1.4:-38612265 | None:intergenic |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 1.4:-38622719 | None:intergenic |
| ACAGTCCATGAAACAGCTAT+CGG | 0.587300 | 1.4:+38628304 | MS.gene035509:CDS |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 1.4:-38622575 | None:intergenic |
| GAATAAAATACAAGGCTCGA+TGG | 0.590027 | 1.4:+38617232 | MS.gene035509:CDS |
| TTGCAAGACTGATCGCATTG+AGG | 0.590062 | 1.4:+38624421 | MS.gene035509:CDS |
| TCTTGTTACCGAGCAGCAGA+AGG | 0.596244 | 1.4:+38624001 | MS.gene035509:CDS |
| CGGAGGATAGGTTGACAAAG+AGG | 0.598561 | 1.4:+38614715 | MS.gene035509:intron |
| ATCCGCAAAGAAGTATAATG+AGG | 0.599544 | 1.4:+38616892 | MS.gene035509:CDS |
| ATGTGCAGGATGTTAGAAGA+GGG | 0.599871 | 1.4:+38620050 | MS.gene035509:intron |
| TTGTACAGTATTTAGACGAG+AGG | 0.601877 | 1.4:+38615365 | MS.gene035509:CDS |
| TATCTGCAAGAATCTGGATG+TGG | 0.602042 | 1.4:+38622534 | MS.gene035509:CDS |
| AGCTGATGGAAGAAATTCAA+CGG | 0.603393 | 1.4:+38619337 | MS.gene035509:CDS |
| CATGCCTATCCTCACTGCGT+AGG | 0.605441 | 1.4:-38612299 | None:intergenic |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 1.4:+38624052 | MS.gene035509:CDS |
| TGAACTTGATGCAGGAGATG+AGG | 0.607188 | 1.4:+38625836 | MS.gene035509:CDS |
| TCCTGCTGTAACTTCAACTG+CGG | 0.607414 | 1.4:-38620167 | None:intergenic |
| TGCTCAACAAAAGCTTGCAG+AGG | 0.607778 | 1.4:+38615492 | MS.gene035509:CDS |
| AGTATACTTTATCAAAAGCA+AGG | 0.608236 | 1.4:+38617612 | MS.gene035509:CDS |
| AAAGAATTAGAGCAATTGCT+GGG | 0.609019 | 1.4:+38624974 | MS.gene035509:CDS |
| GATGATGATCAAGACGAGGA+TGG | 0.611923 | 1.4:+38627842 | MS.gene035509:CDS |
| ACTTAATGATGCAAAAGTGT+TGG | 0.612617 | 1.4:+38624656 | MS.gene035509:CDS |
| GTATTCTCTGAACTTGTACA+GGG | 0.613150 | 1.4:+38626366 | MS.gene035509:CDS |
| TATTTGGCTGCAGTCTATGG+AGG | 0.615570 | 1.4:+38624919 | MS.gene035509:intron |
| GATAGAACAAGCTCGGAACA+AGG | 0.616516 | 1.4:+38616859 | MS.gene035509:intron |
| TATGGCAAAGATAAGTGTAA+GGG | 0.620771 | 1.4:-38628348 | None:intergenic |
| TAATATCAAGTCTAGATCAA+CGG | 0.620777 | 1.4:+38626289 | MS.gene035509:CDS |
| ATTCTCTGAACTTGTACAGG+GGG | 0.623659 | 1.4:+38626368 | MS.gene035509:CDS |
| TAATTCAGACAATCGTATCC+CGG | 0.625351 | 1.4:+38612493 | MS.gene035509:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 1.4:+38622579 | MS.gene035509:CDS |
| ATACTTGAGAATAAAATACA+AGG | 0.629528 | 1.4:+38617224 | MS.gene035509:CDS |
| CATTGATCATTTAACACCAG+AGG | 0.629638 | 1.4:+38624337 | MS.gene035509:CDS |
| GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 1.4:+38615181 | MS.gene035509:CDS |
| ATCAAGTCTAGATCAACGGA+AGG | 0.632478 | 1.4:+38626293 | MS.gene035509:CDS |
| ATCTGATGATGATGAGTCTG+TGG | 0.639198 | 1.4:+38624605 | MS.gene035509:CDS |
| AATGTGCAGGATGTTAGAAG+AGG | 0.642397 | 1.4:+38620049 | MS.gene035509:intron |
| CTCTGTGGATAAGTGACGCG+AGG | 0.643850 | 1.4:-38620521 | None:intergenic |
| CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 1.4:-38629135 | None:intergenic |
| AAGAGGAAGTGCACTTACGC+AGG | 0.648679 | 1.4:+38614732 | MS.gene035509:CDS |
| CTTTAAAAGAGGTATGACAT+CGG | 0.649454 | 1.4:-38620546 | None:intergenic |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.650142 | 1.4:+38624572 | MS.gene035509:CDS |
| TGCTGATGCCAATTCCAAGA+GGG | 0.651145 | 1.4:+38624629 | MS.gene035509:CDS |
| CGATGATGATGATCAAGACG+AGG | 0.651573 | 1.4:+38627838 | MS.gene035509:CDS |
| GTACATTGGAGTGAAAGTGA+AGG | 0.655358 | 1.4:+38627901 | MS.gene035509:CDS |
| CTTTCAAAACCTACGCAGTG+AGG | 0.659816 | 1.4:+38612290 | MS.gene035509:CDS |
| TCCTCGGGAACCAAATCCAG+AGG | 0.664489 | 1.4:+38627865 | MS.gene035509:CDS |
| TTGATGTCAAAGACTTACAA+GGG | 0.664824 | 1.4:+38617056 | MS.gene035509:CDS |
| CCTCGGGAACCAAATCCAGA+GGG | 0.665132 | 1.4:+38627866 | MS.gene035509:CDS |
| TATTCTCTGAACTTGTACAG+GGG | 0.676095 | 1.4:+38626367 | MS.gene035509:CDS |
| TGATGCCAATTCCAAGAGGG+AGG | 0.677675 | 1.4:+38624632 | MS.gene035509:CDS |
| GAGGTTGAAGGAACTAGACG+AGG | 0.680578 | 1.4:+38615384 | MS.gene035509:CDS |
| TCCATGAAACAGCTATCGGG+AGG | 0.684031 | 1.4:+38628308 | MS.gene035509:CDS |
| TTTCGGATATAACATTAACA+CGG | 0.684048 | 1.4:-38629198 | None:intergenic |
| TCGAGAGCAAATTGCCACAG+AGG | 0.686171 | 1.4:+38610983 | MS.gene035509:CDS |
| TCATCATAACCAGATGACCA+TGG | 0.692755 | 1.4:-38626392 | None:intergenic |
| GATTTACTGAAGGAAATAGG+TGG | 0.697344 | 1.4:+38615159 | MS.gene035509:CDS |
| GCTTTCATCAAACATAACAC+AGG | 0.700247 | 1.4:+38617710 | MS.gene035509:CDS |
| TGACAGTATCCACATTAAGG+AGG | 0.700442 | 1.4:+38622783 | MS.gene035509:CDS |
| CCTTGATGAAAGACTCTGAG+CGG | 0.705698 | 1.4:+38615133 | MS.gene035509:CDS |
| TTCTCTGAACTTGTACAGGG+GGG | 0.709062 | 1.4:+38626369 | MS.gene035509:CDS |
| TTGCTGATGCCAATTCCAAG+AGG | 0.709781 | 1.4:+38624628 | MS.gene035509:CDS |
| CGGCTTAATGATGAAATGCG+TGG | 0.719466 | 1.4:+38619357 | MS.gene035509:CDS |
| CCAACAGCAGTTCTGTACTG+AGG | 0.722486 | 1.4:-38628428 | None:intergenic |
| GGTATGACATCGGAACTCTG+TGG | 0.736154 | 1.4:-38620536 | None:intergenic |
| GACATGATAGGTTCAAACGG+AGG | 0.737611 | 1.4:+38625679 | MS.gene035509:intron |
| CTCGGGAACCAAATCCAGAG+GGG | 0.743912 | 1.4:+38627867 | MS.gene035509:CDS |
| TCTAGGACTGAAATCCTCTG+TGG | 0.746177 | 1.4:-38610997 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 38610523 | 38629270 | 38610523 | ID=MS.gene035509 |
| chr1.4 | mRNA | 38610523 | 38629270 | 38610523 | ID=MS.gene035509.t1;Parent=MS.gene035509 |
| chr1.4 | exon | 38610523 | 38610537 | 38610523 | ID=MS.gene035509.t1.exon1;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38610523 | 38610537 | 38610523 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38610957 | 38611032 | 38610957 | ID=MS.gene035509.t1.exon2;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38610957 | 38611032 | 38610957 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38612094 | 38612132 | 38612094 | ID=MS.gene035509.t1.exon3;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38612094 | 38612132 | 38612094 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38612265 | 38612332 | 38612265 | ID=MS.gene035509.t1.exon4;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38612265 | 38612332 | 38612265 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38612443 | 38612514 | 38612443 | ID=MS.gene035509.t1.exon5;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38612443 | 38612514 | 38612443 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38614725 | 38614804 | 38614725 | ID=MS.gene035509.t1.exon6;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38614725 | 38614804 | 38614725 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38614938 | 38615016 | 38614938 | ID=MS.gene035509.t1.exon7;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38614938 | 38615016 | 38614938 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38615120 | 38615237 | 38615120 | ID=MS.gene035509.t1.exon8;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38615120 | 38615237 | 38615120 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38615338 | 38615513 | 38615338 | ID=MS.gene035509.t1.exon9;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38615338 | 38615513 | 38615338 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38616860 | 38617105 | 38616860 | ID=MS.gene035509.t1.exon10;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38616860 | 38617105 | 38616860 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38617200 | 38617321 | 38617200 | ID=MS.gene035509.t1.exon11;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38617200 | 38617321 | 38617200 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38617587 | 38617731 | 38617587 | ID=MS.gene035509.t1.exon12;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38617587 | 38617731 | 38617587 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38619330 | 38619502 | 38619330 | ID=MS.gene035509.t1.exon13;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38619330 | 38619502 | 38619330 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38619616 | 38619715 | 38619616 | ID=MS.gene035509.t1.exon14;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38619616 | 38619715 | 38619616 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38620058 | 38620194 | 38620058 | ID=MS.gene035509.t1.exon15;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38620058 | 38620194 | 38620058 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38620409 | 38620610 | 38620409 | ID=MS.gene035509.t1.exon16;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38620409 | 38620610 | 38620409 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38622517 | 38622604 | 38622517 | ID=MS.gene035509.t1.exon17;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38622517 | 38622604 | 38622517 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38622689 | 38622819 | 38622689 | ID=MS.gene035509.t1.exon18;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38622689 | 38622819 | 38622689 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38623981 | 38624130 | 38623981 | ID=MS.gene035509.t1.exon19;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38623981 | 38624130 | 38623981 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38624251 | 38624442 | 38624251 | ID=MS.gene035509.t1.exon20;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38624251 | 38624442 | 38624251 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38624522 | 38624705 | 38624522 | ID=MS.gene035509.t1.exon21;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38624522 | 38624705 | 38624522 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38624791 | 38624861 | 38624791 | ID=MS.gene035509.t1.exon22;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38624791 | 38624861 | 38624791 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38624932 | 38625083 | 38624932 | ID=MS.gene035509.t1.exon23;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38624932 | 38625083 | 38624932 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38625689 | 38625857 | 38625689 | ID=MS.gene035509.t1.exon24;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38625689 | 38625857 | 38625689 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38626276 | 38626422 | 38626276 | ID=MS.gene035509.t1.exon25;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38626276 | 38626422 | 38626276 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38627827 | 38627922 | 38627827 | ID=MS.gene035509.t1.exon26;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38627827 | 38627922 | 38627827 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38628278 | 38628452 | 38628278 | ID=MS.gene035509.t1.exon27;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38628278 | 38628452 | 38628278 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| chr1.4 | exon | 38629080 | 38629270 | 38629080 | ID=MS.gene035509.t1.exon28;Parent=MS.gene035509.t1 |
| chr1.4 | CDS | 38629080 | 38629270 | 38629080 | ID=cds.MS.gene035509.t1;Parent=MS.gene035509.t1 |
| Gene Sequence |
| Protein sequence |
