AlfalfaGEDB | MS.gene035588

M. sativa cultivar XinJiangDaYe / MS.gene035588

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13516.9 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035588.t1	XP_003610325.1	95.1	852	41	1	1	852	1	851	0.00E+00	1213

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035588.t1	C0LGK9	71.5	855	236	7	1	852	3	852	4.7e-253	875.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035588.t1	G7JGQ5	95.1	852	41	1	1	852	1	851	0.0e+00	1213.0

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene006300	MS.gene035588	PPI
MS.gene34485	MS.gene035588	PPI
MS.gene41427	MS.gene035588	PPI
MS.gene49082	MS.gene035588	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035588.t1	MTR_4g130920	98.122	852	15	1	1	852	1	851	0.0	1700
MS.gene035588.t1	MTR_1g100787	34.207	801	443	22	72	848	529	1269	1.08e-115	382
MS.gene035588.t1	MTR_1g100787	33.333	336	201	7	64	392	426	745	8.36e-31	131
MS.gene035588.t1	MTR_1g100787	31.385	325	195	6	71	392	290	589	1.43e-26	117
MS.gene035588.t1	MTR_1g100787	29.042	334	214	8	106	422	348	675	1.20e-21	101
MS.gene035588.t1	MTR_1g100787	30.403	273	162	6	124	392	102	350	3.89e-15	80.5
MS.gene035588.t1	MTR_3g095100	33.452	840	434	29	48	848	398	1151	3.39e-106	354
MS.gene035588.t1	MTR_3g095100	31.392	395	229	10	71	432	203	588	1.56e-28	124
MS.gene035588.t1	MTR_3g009400	32.028	843	448	28	71	851	406	1185	2.79e-97	330
MS.gene035588.t1	MTR_3g009400	29.902	408	238	16	47	412	61	462	3.05e-22	103

Showing 1 to 10 of 873 entries

Previous1 2 3 4 5…88Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene035588.t1	AT2G24230	69.474	855	253	7	1	852	3	852	0.0	1157
MS.gene035588.t1	AT5G58150	48.894	859	353	15	1	849	1	783	0.0	710
MS.gene035588.t1	AT4G39400	33.577	822	451	22	68	848	392	1159	9.52e-114	375
MS.gene035588.t1	AT4G39400	28.541	466	224	14	54	412	62	525	1.57e-18	91.7
MS.gene035588.t1	AT5G07280	32.576	792	453	17	78	847	460	1192	2.56e-112	371
MS.gene035588.t1	AT5G07280	33.428	353	227	8	64	411	111	460	2.12e-33	139
MS.gene035588.t1	AT3G13380	32.414	870	454	27	71	847	307	1135	1.07e-106	355
MS.gene035588.t1	AT3G13380	29.665	418	230	16	47	412	58	463	1.91e-24	110
MS.gene035588.t1	AT3G13380	31.232	349	219	10	67	396	151	497	6.34e-24	108
MS.gene035588.t1	AT3G13380	30.337	356	233	8	71	412	206	560	4.84e-23	106

Showing 1 to 10 of 754 entries

Previous1 2 3 4 5…76Next

Find 164 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGGGAAGTGAAACA+AGG	0.639016	8.1:+2681429	MS.gene035588:CDS
AAACAATATACATCCGATTT+AGG	0.301223	8.1:-2682233	None:intergenic
AAACTCAGGTGGAACATAAC+CGG	0.381747	8.1:-2682183	None:intergenic
AAACTCGGATTTGCAGCTAT+TGG	0.306969	8.1:-2681285	None:intergenic
AAAGAAGAGACGTCGGCCAC+AGG	0.442192	8.1:+2681316	MS.gene035588:CDS
AAAGTATCACCAAAACCATG+TGG	0.692325	8.1:-2680589	None:intergenic
AAATCGGATGTATATTGTTT+TGG	0.313387	8.1:+2682236	MS.gene035588:CDS
AAATTTGGACCTGTTTATCG+AGG	0.615889	8.1:+2681645	MS.gene035588:CDS
AACTCAGGTGGAACATAACC+GGG	0.597970	8.1:-2682182	None:intergenic
AACTCGGATTTGCAGCTATT+GGG	0.356703	8.1:-2681284	None:intergenic

Showing 1 to 10 of 164 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTTATTGAGTTTGCCTA+TGG	-	chr8.1:2680242-2680261	None:intergenic	30.0%
ACATAGAATTCATCAGTGTT+TGG	-	chr8.1:2680055-2680074	None:intergenic	30.0%
ACTAACAACATTGGAAACTT+TGG	+	chr8.1:2680373-2680392	MS.gene035588:CDS	30.0%
ATAATCCAAATAAACACTGC+TGG	-	chr8.1:2682081-2682100	None:intergenic	30.0%
ATCATGAAAACATCGTTCTT+TGG	+	chr8.1:2681246-2681265	MS.gene035588:CDS	30.0%
CAATGAACCTGAAATATGAT+TGG	-	chr8.1:2680353-2680372	None:intergenic	30.0%
CAGAAGGAAACATAAAATGT+GGG	+	chr8.1:2681416-2681435	MS.gene035588:CDS	30.0%
CATAGATATTATTCTCAGCA+AGG	-	chr8.1:2680636-2680655	None:intergenic	30.0%
CTGAAATATGATTGGAAGAA+AGG	-	chr8.1:2680345-2680364	None:intergenic	30.0%
CTTGCTGAGAATAATATCTA+TGG	+	chr8.1:2680634-2680653	MS.gene035588:CDS	30.0%

Showing 1 to 10 of 186 entries

Previous1 2 3 4 5…19Next

Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	2679983	2682541	2679983	ID=MS.gene035588
chr8.1	mRNA	2679983	2682541	2679983	ID=MS.gene035588.t1;Parent=MS.gene035588
chr8.1	exon	2679983	2682541	2679983	ID=MS.gene035588.t1.exon1;Parent=MS.gene035588.t1
chr8.1	CDS	2679983	2682541	2679983	ID=cds.MS.gene035588.t1;Parent=MS.gene035588.t1

Gene Sequence

>MS.gene035588

ATGGGTCTAGGAGTATTTGGATCTGTTTTGGTTTTGACATTTTTGTTCAAGCATTTAGCTTCACAGCAGCCAAACACTGATGAATTCTATGTCTCTGAGTTTTTGAAGAAAATGGGTTTAACATCATCCTCCAAAGTTTACAACTTTTCATCTTCTGTTTGTTCATGGAAAGGTGTTCATTGTGATTCCAATAAGGAACATGTTGTTGAATTGAACCTTTCTGGTATTGGTCTTACTGGTCCAATTCCTGATACAACCATAGGCAAACTCAATAAACTTCAATCTTTGGATCTTAGCAACAACAAAATCACTACTTTGCCTTCAGATTTTTGGAGTTTATCCTCTCTCAAAAGCCTTAACCTTTCTTCCAATCATATTTCAGGTTCATTGACTAACAACATTGGAAACTTTGGTTCACTTGAAAACTTTGACTTGTCAAAAAACAGTTTCTCTGATGAAATTCCTGAAGCTTTGAGTTCCCTTGTGAGTTTGAAGGTTCTCAAACTTGACCACAACATGTTTGTTAGAAGCATTCCTTCAGGGATTCTCAAGTGTCAGTCTCTAGTTTCAATTGATCTTTCATCAAATCAGCTAAGTGGAACACTTCCACATGGTTTTGGTGATACTTTTCCTAAGCTTAGGACTTTGAACCTTGCTGAGAATAATATCTATGGTGGTGTATCAGATTTTTCAAGGTTGAAGTCTATTGTGAGTCTCAACATTTCAGGAAATTCATTTCAAGGTTCTATTATAGATGTCTTTGTGCTAAAGTTGGAGGCTTTGGACCTTAGCAGAAACCAATTTCAAGGTCACATTTCTCAGGTAAAGAACAACTGGTCTCATTTAGTTTATCTGGATTTGTCTGAGAATCAGCTTAGTGGAGAAATTTTCCAAAACTTGAACAATTCAATGAATTTAAAGCACCTTAGTCTTGCATGCAATAGATTTTCAAGACAGAAATTTCCAAAGATTGAAATGCTCCTAGGATTGGAATATCTTAATTTGTCTAAAACTAGTCTTGTTGGTCACATTCCTGATGAAATCTCACATCTTGGTAATTTGAATGCACTTGATCTTTCTATGAATCATCTTGATGGAAAAATTCCCTTACTGAAGAATAAACATCTTCAAGTTATTGACTTTTCACACAACAATTTGAGTGGACCAGTCCCTTCATCTATCTTGAAGAGTCTCCCAAAGATGAAGAAATATAACTTCTCATATAATAACTTAACCCTTTGTGCTTCAGAAATCAAACCTGATATCATGAAAACATCGTTCTTTGGATCAGTTAACAGCTGCCCAATAGCTGCAAATCCGAGTTTTTTCAAAAAAAGAAGAGACGTCGGCCACAGGGGAATGAAGCTTGCTCTTGTATTAACCCTCTCGTTGATATTTGCGCTTGCTGGTATTCTGTTTCTAGCCTTTGGTTGCAGAAGGAAACATAAAATGTGGGAAGTGAAACAAGGTTCATACAGAGAAGAACAGAATATCTCAGGTCCTTTTTCTTTCCAAACTGATTCAACAACTTGGGTAGCTGATGTCAAACAAGCAACATCTGTTCCGGTAGTAATCTTTGAGAAGCCATTGTTGAATATTACATTTGCAGATCTCTTATCTGCAACTTCAAATTTTGATAGAGGTACCCTTTTGGCTGATGGAAAATTTGGACCTGTTTATCGAGGCTTTCTACCTGGAAATATCCATGTAGCAGTTAAAGTGTTGGTTGTGGGTTCTACATTGACAGATGAAGAAGCTGCAAGAGAGCTTGAGTTTCTTGGTAGAATCAAGCATCCTAATCTAGTTCCTTTAACTGGTTATTGTGTAGCTGGTGATCAAAGGATCGCTATATATGATTACATGGAGAATGGAAACTTGCAAAATCTTCTTTATGATTTGCCACTTGGTGTTCAAAGTACAGATGATTGGAGCACAGATACTTGGGAAGAAGCTGATAATGGAATTCAAAATGTTGGTTCTGAAGGATTGCTCACAACTTGGAGATTTCGACACAAAATCGCACTTGGAACTGCAAGAGCATTGGCTTTTCTGCATCATGGATGTTCTCCTCCAATAATTCATAGAGCGGTCAAAGCCAGCAGTGTTTATTTGGATTATGATTTGGAGCCAAGGTTGTCTGATTTTGGTCTTGCCAAGATTTTTGGAAGTGGTTTGGACGAAGAGATTGCACGCGGTTCTCCCGGTTATGTTCCACCTGAGTTTTCTCAATCGGAATTTGAGTCTCCAACGCCTAAATCGGATGTATATTGTTTTGGTGTTGTTCTTTTTGAGCTACTTACCGGAAAGAAGCCGGTAGGAGATGATTACACTGATGATAATAAAGAAGCAACAACCTTGGTAAGTTGGGTTAGAGGACTCGTAAGAAAGAATCAAACTTCAAGAGCTATTGATCCGAAAATCCGCGATACAGGATTGGATGAACAAATGGAGGAGGCTCTTAAAGTTGGATATCTATGCACAGCTGATTTACCTTTCAAGAGACCAACCATGCAGCAGATAGTTGGACTTCTAAAGGATATTGAACCTACAACTAGTTAG

Protein sequence

>MS.gene035588.t1

MGLGVFGSVLVLTFLFKHLASQQPNTDEFYVSEFLKKMGLTSSSKVYNFSSSVCSWKGVHCDSNKEHVVELNLSGIGLTGPIPDTTIGKLNKLQSLDLSNNKITTLPSDFWSLSSLKSLNLSSNHISGSLTNNIGNFGSLENFDLSKNSFSDEIPEALSSLVSLKVLKLDHNMFVRSIPSGILKCQSLVSIDLSSNQLSGTLPHGFGDTFPKLRTLNLAENNIYGGVSDFSRLKSIVSLNISGNSFQGSIIDVFVLKLEALDLSRNQFQGHISQVKNNWSHLVYLDLSENQLSGEIFQNLNNSMNLKHLSLACNRFSRQKFPKIEMLLGLEYLNLSKTSLVGHIPDEISHLGNLNALDLSMNHLDGKIPLLKNKHLQVIDFSHNNLSGPVPSSILKSLPKMKKYNFSYNNLTLCASEIKPDIMKTSFFGSVNSCPIAANPSFFKKRRDVGHRGMKLALVLTLSLIFALAGILFLAFGCRRKHKMWEVKQGSYREEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLSATSNFDRGTLLADGKFGPVYRGFLPGNIHVAVKVLVVGSTLTDEEAARELEFLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVQSTDDWSTDTWEEADNGIQNVGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDYDLEPRLSDFGLAKIFGSGLDEEIARGSPGYVPPEFSQSEFESPTPKSDVYCFGVVLFELLTGKKPVGDDYTDDNKEATTLVSWVRGLVRKNQTSRAIDPKIRDTGLDEQMEEALKVGYLCTADLPFKRPTMQQIVGLLKDIEPTTS