Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006300.t1 | XP_013469675.1 | 91.5 | 845 | 71 | 1 | 1 | 845 | 1 | 844 | 2.30E-299 | 1038.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006300.t1 | Q04980 | 25.1 | 415 | 243 | 13 | 1148 | 1505 | 201 | 604 | 2.1e-06 | 57.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006300.t1 | A0A072VQJ7 | 91.5 | 845 | 71 | 1 | 1 | 845 | 1 | 844 | 1.7e-299 | 1038.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006300 | MS.gene012563 | PPI |
| MS.gene006300 | MS.gene048780 | PPI |
| MS.gene006300 | MS.gene015570 | PPI |
| MS.gene006300 | MS.gene035588 | PPI |
| MS.gene019289 | MS.gene006300 | PPI |
| MS.gene006300 | MS.gene048777 | PPI |
| MS.gene006300 | MS.gene072801 | PPI |
| MS.gene006300 | MS.gene030426 | PPI |
| MS.gene006300 | MS.gene72170 | PPI |
| MS.gene006300 | MS.gene070339 | PPI |
| MS.gene006300 | MS.gene57758 | PPI |
| MS.gene050376 | MS.gene006300 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006300.t1 | MTR_1g100633 | 97.633 | 845 | 19 | 1 | 1 | 845 | 1 | 844 | 0.0 | 1674 |
| MS.gene006300.t1 | MTR_1g100633 | 97.592 | 789 | 18 | 1 | 1 | 789 | 1 | 788 | 0.0 | 1566 |
| MS.gene006300.t1 | MTR_1g100633 | 97.548 | 775 | 18 | 1 | 1 | 775 | 1 | 774 | 0.0 | 1538 |
| MS.gene006300.t1 | MTR_1g100627 | 89.535 | 344 | 28 | 1 | 1171 | 1506 | 178 | 521 | 0.0 | 610 |
| MS.gene006300.t1 | MTR_1g100627 | 77.731 | 238 | 28 | 3 | 858 | 1074 | 20 | 253 | 1.72e-100 | 333 |
| MS.gene006300.t1 | MTR_1g100623 | 50.345 | 580 | 165 | 17 | 832 | 1354 | 8 | 521 | 1.34e-135 | 439 |
| MS.gene006300.t1 | MTR_1g100623 | 46.684 | 377 | 116 | 11 | 1148 | 1506 | 520 | 829 | 1.63e-63 | 234 |
| MS.gene006300.t1 | MTR_8g097350 | 37.679 | 767 | 397 | 11 | 1 | 698 | 1 | 755 | 5.44e-134 | 441 |
| MS.gene006300.t1 | MTR_8g097350 | 33.696 | 184 | 91 | 4 | 691 | 845 | 842 | 1023 | 1.58e-12 | 73.2 |
| MS.gene006300.t1 | MTR_8g097350 | 37.532 | 770 | 397 | 11 | 1 | 698 | 1 | 758 | 1.25e-133 | 439 |
| MS.gene006300.t1 | MTR_5g010520 | 36.696 | 793 | 424 | 14 | 1 | 723 | 1 | 785 | 2.79e-132 | 434 |
| MS.gene006300.t1 | MTR_1g100623 | 51.316 | 532 | 147 | 14 | 876 | 1354 | 1 | 473 | 6.44e-132 | 428 |
| MS.gene006300.t1 | MTR_1g100623 | 46.684 | 377 | 116 | 11 | 1148 | 1506 | 472 | 781 | 5.99e-64 | 234 |
| MS.gene006300.t1 | MTR_5g010520 | 36.696 | 793 | 424 | 14 | 1 | 723 | 1 | 785 | 4.93e-131 | 434 |
| MS.gene006300.t1 | MTR_5g010520 | 72.340 | 47 | 13 | 0 | 799 | 845 | 1007 | 1053 | 6.92e-12 | 71.2 |
| MS.gene006300.t1 | MTR_0415s0010 | 43.810 | 210 | 102 | 5 | 216 | 419 | 74 | 273 | 2.40e-37 | 143 |
| MS.gene006300.t1 | MTR_1g100607 | 60.769 | 130 | 26 | 3 | 1383 | 1502 | 91 | 205 | 4.09e-34 | 131 |
| MS.gene006300.t1 | MTR_0415s0020 | 40.704 | 199 | 118 | 0 | 500 | 698 | 29 | 227 | 6.02e-34 | 135 |
| MS.gene006300.t1 | MTR_3g073620 | 27.990 | 393 | 201 | 9 | 5 | 330 | 7 | 384 | 7.11e-34 | 143 |
| MS.gene006300.t1 | MTR_1g062200 | 27.754 | 472 | 248 | 15 | 1 | 413 | 1 | 438 | 3.02e-23 | 108 |
| MS.gene006300.t1 | MTR_1g062200 | 27.754 | 472 | 248 | 15 | 1 | 413 | 1 | 438 | 3.83e-23 | 108 |
| MS.gene006300.t1 | MTR_6g045273 | 33.566 | 286 | 90 | 12 | 1294 | 1501 | 838 | 1101 | 1.49e-18 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006300.t1 | AT5G52280 | 42.794 | 902 | 401 | 20 | 1 | 845 | 1 | 844 | 0.0 | 577 |
| MS.gene006300.t1 | AT5G41140 | 36.162 | 990 | 471 | 25 | 1 | 845 | 1 | 974 | 1.11e-145 | 472 |
| MS.gene006300.t1 | AT5G41140 | 36.159 | 979 | 479 | 23 | 1 | 845 | 1 | 967 | 6.26e-144 | 467 |
| MS.gene006300.t1 | AT1G63300 | 39.258 | 782 | 420 | 16 | 1 | 732 | 1 | 777 | 8.71e-132 | 435 |
| MS.gene006300.t1 | AT1G22060 | 40.972 | 144 | 84 | 1 | 5 | 147 | 7 | 150 | 2.30e-30 | 132 |
| MS.gene006300.t1 | AT1G22060 | 40.972 | 144 | 84 | 1 | 5 | 147 | 7 | 150 | 2.30e-30 | 132 |
| MS.gene006300.t1 | AT4G25580 | 34.021 | 194 | 97 | 5 | 1312 | 1475 | 380 | 572 | 1.27e-15 | 82.8 |
| MS.gene006300.t1 | AT5G52300 | 42.568 | 148 | 59 | 6 | 1350 | 1477 | 434 | 575 | 1.29e-15 | 82.8 |
| MS.gene006300.t1 | AT5G52300 | 42.568 | 148 | 59 | 6 | 1350 | 1477 | 435 | 576 | 1.29e-15 | 82.8 |
| MS.gene006300.t1 | AT4G25580 | 34.021 | 194 | 97 | 5 | 1312 | 1475 | 380 | 572 | 1.64e-15 | 82.4 |
Find 263 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTCTTGATTGCATTTC+TGG | 0.028652 | 1.1:+72506834 | None:intergenic |
| AGTATCTTTGGTTTGATAAT+TGG | 0.107218 | 1.1:+72501418 | None:intergenic |
| GAGAAATTAGCTCCAGTTTA+TGG | 0.119878 | 1.1:-72500540 | MS.gene006300:CDS |
| CTCAAATTCTGAACTTCTTT+TGG | 0.164026 | 1.1:-72507572 | MS.gene006300:CDS |
| CAATAGAAACCGGGAAATTT+TGG | 0.172025 | 1.1:-72501489 | MS.gene006300:CDS |
| TTCAAGATGGGACTTGTTTA+TGG | 0.179533 | 1.1:-72509403 | MS.gene006300:CDS |
| AGTGTCTTTGATTTGATAAT+TGG | 0.192241 | 1.1:+72501940 | None:intergenic |
| GCCCTTGAAATTTGCAAATT+CGG | 0.204924 | 1.1:-72509109 | MS.gene006300:CDS |
| CCGGTTTCTATTGATATCTT+TGG | 0.233401 | 1.1:+72501499 | None:intergenic |
| AGGATTCAGCTTCTCTTCTT+AGG | 0.244608 | 1.1:-72504422 | MS.gene006300:intron |
| TGAAAATCAAGTTAAGTCTT+TGG | 0.245483 | 1.1:-72507134 | MS.gene006300:CDS |
| TTTGGTTCTGTGGTAGGTTT+TGG | 0.249736 | 1.1:+72500942 | None:intergenic |
| CCCACTTGAATCAGTATCTT+TGG | 0.250839 | 1.1:+72501406 | None:intergenic |
| GATGAAAATTTAGGAAATTC+AGG | 0.252983 | 1.1:-72502742 | MS.gene006300:CDS |
| CTCTTCCACAGTAAATGTTT+TGG | 0.259667 | 1.1:+72502618 | None:intergenic |
| TCTGAGCAAGATGAAAATTT+AGG | 0.261797 | 1.1:-72502751 | MS.gene006300:CDS |
| CCCTTGAAATTTGCAAATTC+GGG | 0.262697 | 1.1:-72509108 | MS.gene006300:CDS |
| TATTCGTGTTCCTTTCCTTT+AGG | 0.264361 | 1.1:+72505622 | None:intergenic |
| AGATCTACTCACTACTTTCT+TGG | 0.272550 | 1.1:+72502533 | None:intergenic |
| TTGAATCTGTTAAACTTGTT+AGG | 0.276431 | 1.1:-72509367 | MS.gene006300:CDS |
| TTCACTAGGCTTTAGCTTCT+CGG | 0.292651 | 1.1:+72500410 | None:intergenic |
| CAGGGACTCTTCTGCTTGAA+TGG | 0.294165 | 1.1:+72507027 | None:intergenic |
| ATTTCAGAAACTTTGAATAA+AGG | 0.296797 | 1.1:-72500363 | MS.gene006300:CDS |
| GATCAAAGCTGTATTCAAAT+TGG | 0.298730 | 1.1:-72509760 | MS.gene006300:CDS |
| AATTCTCTATTTCACTATTC+TGG | 0.302012 | 1.1:+72507410 | None:intergenic |
| ACTGAATACCCTCCTTCTTC+TGG | 0.302300 | 1.1:-72500894 | MS.gene006300:CDS |
| GAGTTCTGTCTGAAGCTATA+AGG | 0.304087 | 1.1:+72508123 | None:intergenic |
| ACAAAAGAATAAGGAAATAT+TGG | 0.304705 | 1.1:-72507521 | MS.gene006300:CDS |
| ACCTATTGGCCTCTCCAAAT+TGG | 0.305344 | 1.1:+72502576 | None:intergenic |
| CTTGTTAGGGATTCAAAATC+AGG | 0.313625 | 1.1:-72509353 | MS.gene006300:CDS |
| TTGTAGGGTTCTTCAAAATC+TGG | 0.322934 | 1.1:-72509201 | MS.gene006300:intron |
| TATTGTGTCTCGTCTTTCTC+AGG | 0.325981 | 1.1:+72507008 | None:intergenic |
| GGATATGTTTCGATTGATTT+CGG | 0.327920 | 1.1:+72502651 | None:intergenic |
| AGAGCAATACAAGGCCAATT+TGG | 0.328275 | 1.1:-72502590 | MS.gene006300:CDS |
| AAAGGAAAGGAACACGAATA+TGG | 0.334534 | 1.1:-72505619 | MS.gene006300:CDS |
| TAGTTTCTGAGGGAGTTTCT+TGG | 0.335900 | 1.1:+72500772 | None:intergenic |
| ACAGATTTCTTCTCATGATT+AGG | 0.336219 | 1.1:+72503371 | None:intergenic |
| GAATGCATTGATGGTATCTT+TGG | 0.340165 | 1.1:-72509474 | MS.gene006300:CDS |
| AAGGGCAGAGAAACAGTAAT+TGG | 0.340819 | 1.1:+72509126 | None:intergenic |
| AATGCTAGAACAAAAGAATA+AGG | 0.342812 | 1.1:-72507530 | MS.gene006300:CDS |
| GACAAAGGCTAAGAAAATTA+AGG | 0.342934 | 1.1:-72503333 | MS.gene006300:CDS |
| CTGTACTGCCATAGCTCAAT+TGG | 0.348542 | 1.1:+72508445 | None:intergenic |
| GCAGTGAAATCCAAAGTATA+TGG | 0.349702 | 1.1:-72500495 | MS.gene006300:CDS |
| TTCTTCAAAATCTGGCTACT+TGG | 0.349811 | 1.1:-72509193 | MS.gene006300:CDS |
| GAATCTTCTTCCAAACCTAT+TGG | 0.354528 | 1.1:+72502562 | None:intergenic |
| TCAGCATCAGATGGAAGTTT+AGG | 0.361910 | 1.1:-72508018 | MS.gene006300:CDS |
| TCAGTCCTGGGGTAGCTTCA+TGG | 0.364313 | 1.1:-72508152 | MS.gene006300:CDS |
| TTTGTTCTAGCATTGCTTCA+AGG | 0.366988 | 1.1:+72507539 | None:intergenic |
| CATTCAATAATTCCTTTGTA+AGG | 0.376479 | 1.1:+72505655 | None:intergenic |
| CAGATGGAAGTTTAGGTGAT+TGG | 0.379221 | 1.1:-72508011 | MS.gene006300:CDS |
| TCTGCAACCTTTCCATAAAC+TGG | 0.379288 | 1.1:+72500528 | None:intergenic |
| TCAAGATGGGACTTGTTTAT+GGG | 0.381612 | 1.1:-72509402 | MS.gene006300:CDS |
| GCCTCAACTGTTCCTCTTGG+TGG | 0.382303 | 1.1:+72508096 | None:intergenic |
| GTATCTTTGGTTTGATAATT+GGG | 0.383411 | 1.1:+72501419 | None:intergenic |
| TATCGCATCTGAGCAGCTTC+AGG | 0.385097 | 1.1:-72506981 | MS.gene006300:CDS |
| GTCATTAGTTCCATATACTT+TGG | 0.387702 | 1.1:+72500485 | None:intergenic |
| CACAAAATCAAGTGCATAAG+AGG | 0.388926 | 1.1:-72508065 | MS.gene006300:CDS |
| AATCTTCCTCCAAAATTTCC+CGG | 0.390462 | 1.1:+72501480 | None:intergenic |
| GCTTCAGTTAGATGCAATAA+AGG | 0.391713 | 1.1:-72507659 | MS.gene006300:CDS |
| TCTTCTCATGATTAGGAGAA+TGG | 0.394684 | 1.1:+72503378 | None:intergenic |
| GAAGAGGCAGGCAGAATTAT+CGG | 0.394976 | 1.1:-72507890 | MS.gene006300:CDS |
| GCGGAACCACAACAGGCTTA+TGG | 0.395493 | 1.1:-72506867 | MS.gene006300:CDS |
| TATGGAAAGGTTGCAGAGGT+AGG | 0.396414 | 1.1:-72500522 | MS.gene006300:CDS |
| CAAGACAAATCAACGGTCTC+AGG | 0.396783 | 1.1:-72507804 | MS.gene006300:CDS |
| TGAATCTGTTAAACTTGTTA+GGG | 0.399721 | 1.1:-72509366 | MS.gene006300:CDS |
| TTTGGAGAGGCCAATAGGTT+TGG | 0.400132 | 1.1:-72502572 | MS.gene006300:CDS |
| CCAAAGATATCAATAGAAAC+CGG | 0.400508 | 1.1:-72501499 | MS.gene006300:CDS |
| GGAAACTGAACTGAAAGAAA+TGG | 0.401729 | 1.1:-72505598 | MS.gene006300:CDS |
| TATTGGATCTATCTTCCAAT+AGG | 0.408356 | 1.1:-72507504 | MS.gene006300:CDS |
| TTTCTTCTAGTCTCTTCACT+TGG | 0.412470 | 1.1:+72507212 | None:intergenic |
| AAATTGGCCTTGTATTGCTC+TGG | 0.412538 | 1.1:+72502592 | None:intergenic |
| AAACATATATCTCAATTAGA+AGG | 0.412778 | 1.1:-72506566 | MS.gene006300:CDS |
| GCCCGAATTTGCAAATTTCA+AGG | 0.415467 | 1.1:+72509107 | None:intergenic |
| GCATCAAATGGCATCAGTCC+TGG | 0.418524 | 1.1:-72508165 | MS.gene006300:CDS |
| TGTGTTTCATTTCATTGTGC+TGG | 0.418901 | 1.1:+72506627 | None:intergenic |
| GCCAATTTGGAGAGGCCAAT+AGG | 0.421836 | 1.1:-72502577 | MS.gene006300:CDS |
| TCTCATGATGCACGGGTTGA+AGG | 0.427936 | 1.1:-72502688 | MS.gene006300:CDS |
| GAAAGATTACAGGAGCCTTC+AGG | 0.428828 | 1.1:-72507958 | MS.gene006300:CDS |
| TTAAGGATGCTGTTGGCTCT+TGG | 0.430432 | 1.1:-72500224 | MS.gene006300:CDS |
| TGCAGAAATGGGGAAGATAA+TGG | 0.433442 | 1.1:-72508504 | MS.gene006300:intron |
| CTCATTGTCTCTTGAGGTCA+TGG | 0.434335 | 1.1:+72506469 | None:intergenic |
| ATTATTATTGAAGTTCTGTT+GGG | 0.435565 | 1.1:+72507738 | None:intergenic |
| TTACAGTTGCAACAATGAAA+TGG | 0.436006 | 1.1:+72509309 | None:intergenic |
| AGTTCTGTCTGAAGCTATAA+GGG | 0.436569 | 1.1:+72508124 | None:intergenic |
| ATGAATTGCGGAACCACAAC+AGG | 0.437283 | 1.1:-72506874 | MS.gene006300:CDS |
| TGTGGATGAAGGAGGAAAAC+AGG | 0.438652 | 1.1:-72500041 | MS.gene006300:CDS |
| GTCAAATACAGGCTGGTCAA+TGG | 0.441874 | 1.1:-72508043 | MS.gene006300:CDS |
| CAGTCCTGGGGTAGCTTCAT+GGG | 0.444592 | 1.1:-72508151 | MS.gene006300:CDS |
| GTTGGTTTCCCAACATCATC+TGG | 0.444751 | 1.1:+72509449 | None:intergenic |
| TTGGCCTCAACTGTTCCTCT+TGG | 0.447378 | 1.1:+72508093 | None:intergenic |
| CTCTCAAGAGATTCCTCAAG+TGG | 0.449772 | 1.1:+72501686 | None:intergenic |
| TATTATTATTGAAGTTCTGT+TGG | 0.451599 | 1.1:+72507737 | None:intergenic |
| GTGTCTTTGATTTGATAATT+GGG | 0.456143 | 1.1:+72501941 | None:intergenic |
| TCATCCAAGTCAACATCATC+AGG | 0.457574 | 1.1:+72503239 | None:intergenic |
| TTTGTTATAGGTGGAGGAAA+TGG | 0.465832 | 1.1:-72500112 | MS.gene006300:intron |
| ATCGTCATTGGTCTCCATCA+AGG | 0.466927 | 1.1:-72507161 | MS.gene006300:CDS |
| CTTGGTGCTTGATGATCTTG+TGG | 0.467204 | 1.1:+72503194 | None:intergenic |
| TTCTTCTAGTCTCTTCACTT+GGG | 0.467384 | 1.1:+72507213 | None:intergenic |
| GGAGAAAGAACTGAGAATAC+AGG | 0.469997 | 1.1:-72507113 | MS.gene006300:CDS |
| CTTGGATGAGGATAAGCAAC+TGG | 0.473991 | 1.1:-72503225 | MS.gene006300:CDS |
| TACTGTCAGCAACAGGTGGC+TGG | 0.476381 | 1.1:+72500916 | None:intergenic |
| AGAAGAAAAGATAGAGATGC+AGG | 0.477881 | 1.1:-72507197 | MS.gene006300:CDS |
| TATTCAGTACTGTCAGCAAC+AGG | 0.478795 | 1.1:+72500909 | None:intergenic |
| ACTGAGTACCATCCTGCTGC+TGG | 0.479417 | 1.1:-72501596 | MS.gene006300:CDS |
| AGAAGCAGAATTAAATGCTA+TGG | 0.479810 | 1.1:-72506528 | MS.gene006300:CDS |
| TCAAATACAGGCTGGTCAAT+GGG | 0.480928 | 1.1:-72508042 | MS.gene006300:CDS |
| GAGGAAGATTCTCAAGATCA+AGG | 0.481472 | 1.1:-72501467 | MS.gene006300:CDS |
| CATCAAATGGCATCAGTCCT+GGG | 0.483449 | 1.1:-72508164 | MS.gene006300:CDS |
| ATCAAAATCAGAAATGCATA+AGG | 0.483727 | 1.1:-72506423 | MS.gene006300:intron |
| AGGCATGGTTGACAAGGTTA+AGG | 0.484836 | 1.1:-72500241 | MS.gene006300:CDS |
| TTGGTGCTTGATGATCTTGT+GGG | 0.485800 | 1.1:+72503195 | None:intergenic |
| GAATGAAGTGGCGGTCCTAA+AGG | 0.486341 | 1.1:-72505637 | MS.gene006300:CDS |
| ACAAAGGCACAGGGATGAAA+AGG | 0.486938 | 1.1:-72506687 | MS.gene006300:CDS |
| TGATGCATCGGATCTACTCT+TGG | 0.487712 | 1.1:+72508182 | None:intergenic |
| TCTGAAATTTGCAGAGGTAG+AGG | 0.487867 | 1.1:-72505553 | MS.gene006300:CDS |
| GTTACAAGCACTTCGGAAGC+AGG | 0.487924 | 1.1:-72507860 | MS.gene006300:CDS |
| AGTTTAGGTGATTGGACAAA+CGG | 0.490146 | 1.1:-72508003 | MS.gene006300:CDS |
| CAGTGTCAGCAACAGATGAC+TGG | 0.491913 | 1.1:+72501615 | None:intergenic |
| CAAGTACTTGATCATGGTAA+TGG | 0.492155 | 1.1:-72503287 | MS.gene006300:CDS |
| AAAGCCTAGTGAAGAAGATA+AGG | 0.492689 | 1.1:-72500400 | MS.gene006300:CDS |
| GTGAGATTGTTTCTCTGAAG+AGG | 0.495168 | 1.1:-72507906 | MS.gene006300:CDS |
| GAGAAAACTGCTGTTCAAGA+TGG | 0.500999 | 1.1:-72509416 | MS.gene006300:CDS |
| GCGGAACAAGCTGTGGATGA+AGG | 0.501371 | 1.1:-72500052 | MS.gene006300:CDS |
| AACATCGTTGAGAAACAATC+AGG | 0.501979 | 1.1:-72500726 | MS.gene006300:CDS |
| TCTTCAAAATCTGGCTACTT+GGG | 0.505506 | 1.1:-72509192 | MS.gene006300:CDS |
| TAAATTTGAAGATGAACTCC+AGG | 0.505676 | 1.1:-72507086 | MS.gene006300:CDS |
| TGATCATGGCTTCCAGCAGC+AGG | 0.506145 | 1.1:+72501584 | None:intergenic |
| AGGAATCGATATTGAAGGTA+CGG | 0.508541 | 1.1:-72502722 | MS.gene006300:CDS |
| AAGAGACAATGAGGCTGCTA+AGG | 0.508811 | 1.1:-72506459 | MS.gene006300:CDS |
| AGCAGCCTCATTGTCTCTTG+AGG | 0.509235 | 1.1:+72506463 | None:intergenic |
| TTGAAGATGCACAAAGGCAC+AGG | 0.510046 | 1.1:-72506697 | MS.gene006300:CDS |
| ATTGTGTCTCGTCTTTCTCA+GGG | 0.510679 | 1.1:+72507009 | None:intergenic |
| GCTGTGGAAATTTATAATGA+TGG | 0.510768 | 1.1:-72508480 | MS.gene006300:CDS |
| ACCAAAGATACTGATTCAAG+TGG | 0.511121 | 1.1:-72501407 | MS.gene006300:CDS |
| CTTTGGTGCCAGATGATGTT+GGG | 0.511310 | 1.1:-72509457 | MS.gene006300:CDS |
| ACACAGTTTGCAGAAAGAAC+AGG | 0.512040 | 1.1:-72506609 | MS.gene006300:CDS |
| TTTCTTCCATAAGCCTGTTG+TGG | 0.519288 | 1.1:+72506861 | None:intergenic |
| AGATCAACATGAATTGAAAG+TGG | 0.519867 | 1.1:-72506801 | MS.gene006300:CDS |
| AGTAGATCCGATGCATCAAA+TGG | 0.520711 | 1.1:-72508177 | MS.gene006300:CDS |
| CCCGAATTTGCAAATTTCAA+GGG | 0.521489 | 1.1:+72509108 | None:intergenic |
| GGTCACTGTGAAAGATTACT+TGG | 0.522288 | 1.1:-72500433 | MS.gene006300:CDS |
| CTGAAATTTGCAGAGGTAGA+GGG | 0.524057 | 1.1:-72505552 | MS.gene006300:CDS |
| AGTGCCTTATCTTCTTCACT+AGG | 0.524491 | 1.1:+72500396 | None:intergenic |
| AGAAAGACAACAGCTTGTTA+TGG | 0.526698 | 1.1:-72505529 | MS.gene006300:CDS |
| TACTCCTGATGATGTTGACT+TGG | 0.532195 | 1.1:-72503243 | MS.gene006300:CDS |
| AAAGGAATTATTGAATGAAG+TGG | 0.532662 | 1.1:-72505649 | MS.gene006300:CDS |
| AGAAATGCAATCAAGAGCTC+AGG | 0.533105 | 1.1:-72506832 | MS.gene006300:CDS |
| AGTCTGATATTGATAATACT+AGG | 0.533275 | 1.1:-72507681 | MS.gene006300:CDS |
| AGTGAGAATGGAAATAACAT+TGG | 0.533601 | 1.1:-72500576 | MS.gene006300:CDS |
| AACTCAGAATGAATATCCTC+AGG | 0.538370 | 1.1:-72500823 | MS.gene006300:CDS |
| CTGAAAACATGTTCAAGTCA+TGG | 0.540034 | 1.1:-72509797 | None:intergenic |
| ATTGGAATTTCAAGCAACTC+AGG | 0.543027 | 1.1:-72509742 | MS.gene006300:intron |
| AGAAAACTGCTGTTCAAGAT+GGG | 0.543774 | 1.1:-72509415 | MS.gene006300:CDS |
| GAGAGCAATGTGAATAGTCC+AGG | 0.544333 | 1.1:-72500267 | MS.gene006300:CDS |
| GATTGTTTCTCTGAAGAGGC+AGG | 0.546222 | 1.1:-72507902 | MS.gene006300:CDS |
| GGCTCCTGTAATCTTTCTCT+CGG | 0.547618 | 1.1:+72507964 | None:intergenic |
| TTACAGGAGCCTTCAGGCAA+TGG | 0.549125 | 1.1:-72507952 | MS.gene006300:CDS |
| AATGTGAATAGTCCAGGAAA+AGG | 0.550410 | 1.1:-72500261 | MS.gene006300:CDS |
| GGAATGGATGCTGCAAGCAC+TGG | 0.552828 | 1.1:-72505886 | MS.gene006300:CDS |
| CTCAAGAATAACAGAGGACG+AGG | 0.553689 | 1.1:-72506497 | MS.gene006300:CDS |
| AGTGTGGCACAAACTGATCA+TGG | 0.557741 | 1.1:+72501570 | None:intergenic |
| ACTGATGCCATTTGATGCAT+CGG | 0.558366 | 1.1:+72508170 | None:intergenic |
| GGAAGAGTATATGCCTCGGC+AGG | 0.559218 | 1.1:+72501962 | None:intergenic |
| GGTCAACAAGTACTTGATCA+TGG | 0.559374 | 1.1:-72503293 | MS.gene006300:CDS |
| ATTAGCTCCAGTTTATGGAA+AGG | 0.559605 | 1.1:-72500535 | MS.gene006300:CDS |
| GACAAGGTTAAGGATGCTGT+TGG | 0.562416 | 1.1:-72500231 | MS.gene006300:CDS |
| ATATCACGGCTTCCAGAAGA+AGG | 0.562618 | 1.1:+72500882 | None:intergenic |
| GATACTGATTCAAGTGGGAA+AGG | 0.564012 | 1.1:-72501401 | MS.gene006300:intron |
| GGAATCGATATTGAAGGTAC+GGG | 0.564762 | 1.1:-72502721 | MS.gene006300:CDS |
| AATTCAGGAATCGATATTGA+AGG | 0.564922 | 1.1:-72502727 | MS.gene006300:CDS |
| TCTTGCTCAGATGTAGGTGT+AGG | 0.564990 | 1.1:+72502763 | None:intergenic |
| GTGGCATTGCCATTGCCTGA+AGG | 0.565313 | 1.1:+72507943 | None:intergenic |
| GTGCATAAGAGGTCAAATAC+AGG | 0.566002 | 1.1:-72508054 | MS.gene006300:CDS |
| TCTTTGGATACCGTTTCTTG+AGG | 0.568830 | 1.1:+72501515 | None:intergenic |
| ATTCTCTCTAGAGATTCCTC+AGG | 0.569356 | 1.1:+72500981 | None:intergenic |
| GGATGGAAAATTGGATAGTG+AGG | 0.569404 | 1.1:-72500316 | MS.gene006300:CDS |
| AAAGTATATGGAACTAATGA+CGG | 0.571868 | 1.1:-72500483 | MS.gene006300:CDS |
| GAATGAATATCCTCAAGAAA+CGG | 0.572971 | 1.1:-72501525 | MS.gene006300:CDS |
| AGATTCCTCTCATGATGCAC+GGG | 0.573552 | 1.1:-72502695 | MS.gene006300:CDS |
| TCATCCCATGAAGCTACCCC+AGG | 0.575983 | 1.1:+72508147 | None:intergenic |
| CAATGTCAACAACAGATGAC+TGG | 0.577685 | 1.1:+72501993 | None:intergenic |
| TATCTTATAGAATAGCAACT+TGG | 0.578135 | 1.1:-72508205 | MS.gene006300:intron |
| TATGTTTCGATTGATTTCGG+TGG | 0.579783 | 1.1:+72502654 | None:intergenic |
| CTCTCAAGAGATTCCTCGAG+TGG | 0.580657 | 1.1:+72502061 | None:intergenic |
| AGAGTATATGCCTCGGCAGG+AGG | 0.581849 | 1.1:+72501965 | None:intergenic |
| CATGTTACAAAATGAACACT+CGG | 0.582030 | 1.1:-72507266 | MS.gene006300:CDS |
| AAAAGACATTAAACCACTTG+AGG | 0.582884 | 1.1:-72501699 | MS.gene006300:CDS |
| TCTTTGGTGCCAGATGATGT+TGG | 0.584848 | 1.1:-72509458 | MS.gene006300:CDS |
| AAGATTCCTCTCATGATGCA+CGG | 0.585842 | 1.1:-72502696 | MS.gene006300:CDS |
| ATCAAAGACACTGATCCAAG+TGG | 0.586254 | 1.1:-72501929 | MS.gene006300:CDS |
| TGATGATGTTGACTTGGATG+AGG | 0.587968 | 1.1:-72503237 | MS.gene006300:CDS |
| TTGAAACACCAATTGAGCTA+TGG | 0.589258 | 1.1:-72508453 | MS.gene006300:CDS |
| TCAAAGACACTGATCCAAGT+GGG | 0.590052 | 1.1:-72501928 | MS.gene006300:CDS |
| TATATCTCAATTAGAAGGAG+AGG | 0.593443 | 1.1:-72506561 | MS.gene006300:CDS |
| ACAGGTAACTATTCAGAATG+TGG | 0.594916 | 1.1:-72508640 | MS.gene006300:intron |
| CAAAGATATCAATAGAAACC+GGG | 0.595232 | 1.1:-72501498 | MS.gene006300:CDS |
| AGGAAAAGGCATGGTTGACA+AGG | 0.596050 | 1.1:-72500247 | MS.gene006300:CDS |
| CGCATCTGAGCAGCTTCAGG+AGG | 0.596198 | 1.1:-72506978 | MS.gene006300:CDS |
| AGAGAAGCCAGAGCAATACA+AGG | 0.596761 | 1.1:-72502599 | MS.gene006300:CDS |
| TTTCTCAACGATGTTTGTGA+TGG | 0.599724 | 1.1:+72500734 | None:intergenic |
| AAGGACACAATTAAGAAGCA+TGG | 0.599965 | 1.1:-72503314 | MS.gene006300:CDS |
| GAAGAAATCTGTTCTGAACA+AGG | 0.600595 | 1.1:-72503360 | MS.gene006300:CDS |
| GTAACTATTCAGAATGTGGA+AGG | 0.605000 | 1.1:-72508636 | MS.gene006300:CDS |
| CTACCTTATTTGCAGAAATG+GGG | 0.605496 | 1.1:-72508514 | MS.gene006300:intron |
| GAGTTTCTGTTGCATCAGAG+AGG | 0.605616 | 1.1:+72500841 | None:intergenic |
| AAGTGGCGGTCCTAAAGGAA+AGG | 0.605693 | 1.1:-72505632 | MS.gene006300:CDS |
| AGAAGATAAGGCACTTTCTG+AGG | 0.606948 | 1.1:-72500388 | MS.gene006300:CDS |
| GAGTATATGCCTCGGCAGGA+GGG | 0.607451 | 1.1:+72501966 | None:intergenic |
| TCGAAGAAGCTGATGAATTG+CGG | 0.607639 | 1.1:-72506886 | MS.gene006300:CDS |
| TCTTCTTAAGAATGAAAATG+TGG | 0.611817 | 1.1:-72507329 | MS.gene006300:CDS |
| GATTAGTCTGAAATTTGCAG+AGG | 0.613349 | 1.1:-72505559 | MS.gene006300:CDS |
| TCGAAACATATCCACTGACC+AGG | 0.614435 | 1.1:-72502641 | MS.gene006300:CDS |
| TTCAACCCGTGCATCATGAG+AGG | 0.614756 | 1.1:+72502690 | None:intergenic |
| TCAATGGGTTCAGCATCAGA+TGG | 0.615920 | 1.1:-72508027 | MS.gene006300:CDS |
| CATGGCTTCCAGCAGCAGGA+TGG | 0.619233 | 1.1:+72501588 | None:intergenic |
| GTAGGTGTAGGTGTAGGTGC+AGG | 0.625632 | 1.1:+72502775 | None:intergenic |
| AAGACAAATCAACGGTCTCA+GGG | 0.626387 | 1.1:-72507803 | MS.gene006300:CDS |
| TGGGGAAGATAATGGTGCTG+TGG | 0.626676 | 1.1:-72508496 | MS.gene006300:CDS |
| AAAAGACATTACACCACTCG+AGG | 0.627436 | 1.1:-72502074 | MS.gene006300:CDS |
| CACGGCTTCCAGAAGAAGGA+GGG | 0.627497 | 1.1:+72500886 | None:intergenic |
| TTTGTTGCATCAGAGAAGTG+TGG | 0.629840 | 1.1:+72501554 | None:intergenic |
| GCATAGACTGATCAATATCA+CGG | 0.629983 | 1.1:+72500868 | None:intergenic |
| CACTCGAGGAATCTCTTGAG+AGG | 0.633802 | 1.1:-72502060 | MS.gene006300:CDS |
| TGGAGAAGCGGAACAAGCTG+TGG | 0.634472 | 1.1:-72500059 | MS.gene006300:CDS |
| ATAAGAGGTCAAATACAGGC+TGG | 0.635907 | 1.1:-72508050 | MS.gene006300:CDS |
| AACTAGAGTTACAAGCACTT+CGG | 0.636170 | 1.1:-72507867 | MS.gene006300:CDS |
| TCACGGCTTCCAGAAGAAGG+AGG | 0.638275 | 1.1:+72500885 | None:intergenic |
| ATCAGGTTATGAAGAACCAG+TGG | 0.639087 | 1.1:-72500709 | MS.gene006300:CDS |
| CATTGAATACCCTCCTGCCG+AGG | 0.641281 | 1.1:-72501975 | MS.gene006300:CDS |
| ACTGGTATTAGCAAGTCTGA+AGG | 0.642094 | 1.1:-72505868 | MS.gene006300:CDS |
| TCTGTTGCATCAGAGAGGTG+TGG | 0.646072 | 1.1:+72500846 | None:intergenic |
| TGAAGATGCACAAAGGCACA+GGG | 0.646468 | 1.1:-72506696 | MS.gene006300:CDS |
| CAGTTTGCAGAAAGAACAGG+TGG | 0.646980 | 1.1:-72506606 | MS.gene006300:CDS |
| TGATGCTGAACGCCTTACAA+AGG | 0.649461 | 1.1:-72505667 | MS.gene006300:CDS |
| CCAAAGATACTGATTCAAGT+GGG | 0.653239 | 1.1:-72501406 | MS.gene006300:CDS |
| CAAAGACACTGATCCAAGTG+GGG | 0.653420 | 1.1:-72501927 | MS.gene006300:CDS |
| GTATTAGCAAGTCTGAAGGA+AGG | 0.654276 | 1.1:-72505864 | MS.gene006300:intron |
| GGAATTATTGAATGAAGTGG+CGG | 0.655168 | 1.1:-72505646 | MS.gene006300:CDS |
| AAAAGAAATAACATCACCTG+AGG | 0.655449 | 1.1:-72500997 | MS.gene006300:CDS |
| GAACAAGCTGTGGATGAAGG+AGG | 0.656680 | 1.1:-72500049 | MS.gene006300:CDS |
| ATTGGGAAGAGTATATGCCT+CGG | 0.659465 | 1.1:+72501958 | None:intergenic |
| GCATTCAGTGACACTTGGCG+CGG | 0.662374 | 1.1:-72503408 | MS.gene006300:intron |
| CATGACCTCAAGAGACAATG+AGG | 0.664100 | 1.1:-72506468 | MS.gene006300:CDS |
| ATCAAATGGCATCAGTCCTG+GGG | 0.667145 | 1.1:-72508163 | MS.gene006300:CDS |
| TCAGATGTAGGTGTAGGTGT+AGG | 0.668399 | 1.1:+72502769 | None:intergenic |
| TGGAAGGATATACTGCCGAA+AGG | 0.668488 | 1.1:-72508620 | MS.gene006300:intron |
| GAATAGTCCAGGAAAAGGCA+TGG | 0.668929 | 1.1:-72500256 | MS.gene006300:CDS |
| CAGAACTCAATGCCACCAAG+AGG | 0.670351 | 1.1:-72508108 | MS.gene006300:CDS |
| AAGAAGCTCAAGAATAACAG+AGG | 0.670995 | 1.1:-72506503 | MS.gene006300:CDS |
| TCTGAACAAGGTGAAGACAA+AGG | 0.671117 | 1.1:-72503348 | MS.gene006300:CDS |
| AGTTTATGGAAAGGTTGCAG+AGG | 0.672345 | 1.1:-72500526 | MS.gene006300:CDS |
| GCCACCAAGAGGAACAGTTG+AGG | 0.674754 | 1.1:-72508097 | MS.gene006300:CDS |
| TCAGTACTGTCAGCAACAGG+TGG | 0.676894 | 1.1:+72500912 | None:intergenic |
| AATACAAGGCCAATTTGGAG+AGG | 0.683376 | 1.1:-72502585 | MS.gene006300:CDS |
| CCAGGCCAAAACATTTACTG+TGG | 0.690324 | 1.1:-72502623 | MS.gene006300:CDS |
| AAGAACTTGAAGATGCACAA+AGG | 0.694127 | 1.1:-72506703 | MS.gene006300:CDS |
| AAAGACACTGATCCAAGTGG+GGG | 0.698713 | 1.1:-72501926 | MS.gene006300:CDS |
| TGGTTTGTAAAATCACCACA+AGG | 0.707904 | 1.1:-72500204 | MS.gene006300:intron |
| AGATCAAGGAAGTAGAACTG+AGG | 0.713527 | 1.1:-72501453 | MS.gene006300:CDS |
| AATTTATCAAGACAAATCAA+CGG | 0.718250 | 1.1:-72507811 | MS.gene006300:CDS |
| AGCTCGTAGAAGCATCAGTG+AGG | 0.732886 | 1.1:-72504442 | MS.gene006300:CDS |
| GAATTGTTATAAGCAACGCG+AGG | 0.741429 | 1.1:-72507392 | MS.gene006300:CDS |
| GCTTATAAAAGAGCTCACAG+TGG | 0.747992 | 1.1:-72507359 | MS.gene006300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 72500036 | 72509811 | 72500036 | ID=MS.gene006300 |
| chr1.1 | mRNA | 72500036 | 72509811 | 72500036 | ID=MS.gene006300.t1;Parent=MS.gene006300 |
| chr1.1 | exon | 72509743 | 72509811 | 72509743 | ID=MS.gene006300.t1.exon1;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72509743 | 72509811 | 72509743 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72509313 | 72509513 | 72509313 | ID=MS.gene006300.t1.exon2;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72509313 | 72509513 | 72509313 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72509095 | 72509217 | 72509095 | ID=MS.gene006300.t1.exon3;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72509095 | 72509217 | 72509095 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72508621 | 72508658 | 72508621 | ID=MS.gene006300.t1.exon4;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72508621 | 72508658 | 72508621 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72508422 | 72508521 | 72508422 | ID=MS.gene006300.t1.exon5;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72508422 | 72508521 | 72508422 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72506424 | 72508217 | 72506424 | ID=MS.gene006300.t1.exon6;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72506424 | 72508217 | 72506424 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72505865 | 72505908 | 72505865 | ID=MS.gene006300.t1.exon7;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72505865 | 72505908 | 72505865 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72505527 | 72505689 | 72505527 | ID=MS.gene006300.t1.exon8;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72505527 | 72505689 | 72505527 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72504423 | 72504462 | 72504423 | ID=MS.gene006300.t1.exon9;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72504423 | 72504462 | 72504423 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72503195 | 72503422 | 72503195 | ID=MS.gene006300.t1.exon10;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72503195 | 72503422 | 72503195 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72502545 | 72502835 | 72502545 | ID=MS.gene006300.t1.exon11;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72502545 | 72502835 | 72502545 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72501924 | 72502109 | 72501924 | ID=MS.gene006300.t1.exon12;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72501924 | 72502109 | 72501924 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72501402 | 72501728 | 72501402 | ID=MS.gene006300.t1.exon13;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72501402 | 72501728 | 72501402 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72500205 | 72501032 | 72500205 | ID=MS.gene006300.t1.exon14;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72500205 | 72501032 | 72500205 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| chr1.1 | exon | 72500036 | 72500124 | 72500036 | ID=MS.gene006300.t1.exon15;Parent=MS.gene006300.t1 |
| chr1.1 | CDS | 72500036 | 72500124 | 72500036 | ID=cds.MS.gene006300.t1;Parent=MS.gene006300.t1 |
| Gene Sequence |
| Protein sequence |
