Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41427.t1 | XP_013469675.1 | 91.9 | 854 | 68 | 1 | 1 | 854 | 1 | 853 | 1.60E-305 | 1058.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41427.t1 | A0A072VQJ7 | 91.9 | 854 | 68 | 1 | 1 | 854 | 1 | 853 | 1.2e-305 | 1058.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene41427 | 0.856126 | 3.97E-62 | -1.69E-46 |
| MS.gene049178 | MS.gene41427 | 0.80262 | 5.15E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene41427 | 0.800899 | 1.16E-48 | -1.69E-46 |
| MS.gene049368 | MS.gene41427 | 0.806061 | 9.88E-50 | -1.69E-46 |
| MS.gene049585 | MS.gene41427 | 0.802014 | 6.86E-49 | -1.69E-46 |
| MS.gene049685 | MS.gene41427 | 0.801865 | 7.36E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene41427 | 0.824501 | 7.80E-54 | -1.69E-46 |
| MS.gene049887 | MS.gene41427 | 0.849958 | 2.31E-60 | -1.69E-46 |
| MS.gene049983 | MS.gene41427 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene050085 | MS.gene41427 | 0.80621 | 9.19E-50 | -1.69E-46 |
| MS.gene050114 | MS.gene41427 | 0.80991 | 1.50E-50 | -1.69E-46 |
| MS.gene050213 | MS.gene41427 | 0.802321 | 5.93E-49 | -1.69E-46 |
| MS.gene050224 | MS.gene41427 | 0.845897 | 3.05E-59 | -1.69E-46 |
| MS.gene050317 | MS.gene41427 | 0.801939 | 7.11E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene41427 | 0.847726 | 9.64E-60 | -1.69E-46 |
| MS.gene050439 | MS.gene41427 | 0.800983 | 1.12E-48 | -1.69E-46 |
| MS.gene050551 | MS.gene41427 | 0.869805 | 2.35E-66 | -1.69E-46 |
| MS.gene050556 | MS.gene41427 | 0.82072 | 5.91E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene41427 | -0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene41427 | 0.824802 | 6.63E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene41427 | 0.842627 | 2.30E-58 | -1.69E-46 |
| MS.gene050689 | MS.gene41427 | 0.810386 | 1.18E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene41427 | 0.853783 | 1.90E-61 | -1.69E-46 |
| MS.gene050931 | MS.gene41427 | 0.807883 | 4.07E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene41427 | 0.817412 | 3.34E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene41427 | 0.868997 | 4.30E-66 | -1.69E-46 |
| MS.gene051180 | MS.gene41427 | 0.802475 | 5.51E-49 | -1.69E-46 |
| MS.gene051233 | MS.gene41427 | 0.806725 | 7.16E-50 | -1.69E-46 |
| MS.gene051381 | MS.gene41427 | 0.837989 | 3.75E-57 | -1.69E-46 |
| MS.gene051382 | MS.gene41427 | 0.800322 | 1.52E-48 | -1.69E-46 |
| MS.gene051724 | MS.gene41427 | 0.8137 | 2.24E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene41427 | 0.812874 | 3.40E-51 | -1.69E-46 |
| MS.gene052016 | MS.gene41427 | 0.808853 | 2.53E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene41427 | -0.803176 | 3.95E-49 | -1.69E-46 |
| MS.gene05224 | MS.gene41427 | 0.829808 | 4.18E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene41427 | 0.860873 | 1.52E-63 | -1.69E-46 |
| MS.gene052335 | MS.gene41427 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene41427 | 0.818349 | 2.05E-52 | -1.69E-46 |
| MS.gene052397 | MS.gene41427 | 0.827763 | 1.31E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene41427 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene41427 | 0.831081 | 2.04E-55 | -1.69E-46 |
| MS.gene052514 | MS.gene41427 | 0.827424 | 1.58E-54 | -1.69E-46 |
| MS.gene052516 | MS.gene41427 | 0.840543 | 8.16E-58 | -1.69E-46 |
| MS.gene052609 | MS.gene41427 | 0.882509 | 9.82E-71 | -1.69E-46 |
| MS.gene052665 | MS.gene41427 | 0.814023 | 1.90E-51 | -1.69E-46 |
| MS.gene052776 | MS.gene41427 | 0.809004 | 2.34E-50 | -1.69E-46 |
| MS.gene052994 | MS.gene41427 | 0.821869 | 3.21E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene41427 | 0.852806 | 3.62E-61 | -1.69E-46 |
| MS.gene053143 | MS.gene41427 | 0.849679 | 2.77E-60 | -1.69E-46 |
| MS.gene053144 | MS.gene41427 | 0.802208 | 6.26E-49 | -1.69E-46 |
| MS.gene053167 | MS.gene41427 | 0.827022 | 1.97E-54 | -1.69E-46 |
| MS.gene053381 | MS.gene41427 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene41427 | 0.817991 | 2.47E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene41427 | 0.800055 | 1.72E-48 | -1.69E-46 |
| MS.gene05462 | MS.gene41427 | 0.832906 | 7.23E-56 | -1.69E-46 |
| MS.gene054824 | MS.gene41427 | 0.832847 | 7.48E-56 | -1.69E-46 |
| MS.gene055311 | MS.gene41427 | 0.825236 | 5.23E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene41427 | 0.813868 | 2.06E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene41427 | 0.838645 | 2.54E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene41427 | 0.817518 | 3.16E-52 | -1.69E-46 |
| MS.gene055467 | MS.gene41427 | 0.809649 | 1.70E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene41427 | 0.831789 | 1.37E-55 | -1.69E-46 |
| MS.gene055469 | MS.gene41427 | 0.896691 | 2.89E-76 | -1.69E-46 |
| MS.gene055513 | MS.gene41427 | 0.853316 | 2.59E-61 | -1.69E-46 |
| MS.gene055861 | MS.gene41427 | -0.801399 | 9.17E-49 | -1.69E-46 |
| MS.gene055864 | MS.gene41427 | 0.868586 | 5.85E-66 | -1.69E-46 |
| MS.gene056097 | MS.gene41427 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene056181 | MS.gene41427 | 0.867958 | 9.32E-66 | -1.69E-46 |
| MS.gene056308 | MS.gene41427 | 0.830097 | 3.56E-55 | -1.69E-46 |
| MS.gene056390 | MS.gene41427 | 0.823144 | 1.62E-53 | -1.69E-46 |
| MS.gene056507 | MS.gene41427 | 0.846842 | 1.68E-59 | -1.69E-46 |
| MS.gene056522 | MS.gene41427 | -0.830144 | 3.47E-55 | -1.69E-46 |
| MS.gene057360 | MS.gene41427 | 0.823467 | 1.36E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene41427 | 0.804317 | 2.29E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene41427 | 0.80345 | 3.47E-49 | -1.69E-46 |
| MS.gene058054 | MS.gene41427 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene41427 | 0.81588 | 7.37E-52 | -1.69E-46 |
| MS.gene058638 | MS.gene41427 | 0.876381 | 1.46E-68 | -1.69E-46 |
| MS.gene058639 | MS.gene41427 | 0.872423 | 3.22E-67 | -1.69E-46 |
| MS.gene058647 | MS.gene41427 | 0.815229 | 1.03E-51 | -1.69E-46 |
| MS.gene058649 | MS.gene41427 | 0.822487 | 2.31E-53 | -1.69E-46 |
| MS.gene058720 | MS.gene41427 | 0.803207 | 3.89E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene41427 | 0.883119 | 5.87E-71 | -1.69E-46 |
| MS.gene058852 | MS.gene41427 | 0.811765 | 5.94E-51 | -1.69E-46 |
| MS.gene058919 | MS.gene41427 | 0.804718 | 1.89E-49 | -1.69E-46 |
| MS.gene059007 | MS.gene41427 | 0.811327 | 7.40E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene41427 | 0.835122 | 2.02E-56 | -1.69E-46 |
| MS.gene059171 | MS.gene41427 | 0.855939 | 4.51E-62 | -1.69E-46 |
| MS.gene059570 | MS.gene41427 | 0.809476 | 1.86E-50 | -1.69E-46 |
| MS.gene059713 | MS.gene41427 | 0.84984 | 2.50E-60 | -1.69E-46 |
| MS.gene059725 | MS.gene41427 | 0.830822 | 2.36E-55 | -1.69E-46 |
| MS.gene059965 | MS.gene41427 | 0.818166 | 2.26E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene41427 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene41427 | 0.809812 | 1.57E-50 | -1.69E-46 |
| MS.gene060380 | MS.gene41427 | 0.843086 | 1.74E-58 | -1.69E-46 |
| MS.gene060400 | MS.gene41427 | 0.816269 | 6.03E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene41427 | 0.826323 | 2.89E-54 | -1.69E-46 |
| MS.gene060563 | MS.gene41427 | 0.830226 | 3.31E-55 | -1.69E-46 |
| MS.gene060637 | MS.gene41427 | 0.840508 | 8.34E-58 | -1.69E-46 |
| MS.gene060869 | MS.gene41427 | 0.811547 | 6.63E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene41427 | 0.826912 | 2.09E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene41427 | 0.805115 | 1.56E-49 | -1.69E-46 |
| MS.gene060933 | MS.gene41427 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene41427 | 0.873417 | 1.49E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene41427 | 0.82594 | 3.56E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050376 | MS.gene41427 | PPI |
| MS.gene41427 | MS.gene048780 | PPI |
| MS.gene41427 | MS.gene035588 | PPI |
| MS.gene41427 | MS.gene57758 | PPI |
| MS.gene41427 | MS.gene030426 | PPI |
| MS.gene41427 | MS.gene012563 | PPI |
| MS.gene41427 | MS.gene72170 | PPI |
| MS.gene41427 | MS.gene015570 | PPI |
| MS.gene019289 | MS.gene41427 | PPI |
| MS.gene41427 | MS.gene048777 | PPI |
| MS.gene41427 | MS.gene072801 | PPI |
| MS.gene41427 | MS.gene070339 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41427.t1 | MTR_1g100633 | 97.658 | 854 | 19 | 1 | 1 | 854 | 1 | 853 | 0.0 | 1688 |
| MS.gene41427.t1 | MTR_1g100633 | 97.465 | 789 | 19 | 1 | 1 | 789 | 1 | 788 | 0.0 | 1562 |
| MS.gene41427.t1 | MTR_1g100633 | 97.419 | 775 | 19 | 1 | 1 | 775 | 1 | 774 | 0.0 | 1533 |
| MS.gene41427.t1 | MTR_8g097350 | 37.810 | 767 | 396 | 12 | 1 | 698 | 1 | 755 | 6.95e-141 | 444 |
| MS.gene41427.t1 | MTR_8g097350 | 35.417 | 192 | 93 | 4 | 691 | 853 | 842 | 1031 | 4.67e-17 | 86.7 |
| MS.gene41427.t1 | MTR_8g097350 | 37.532 | 770 | 397 | 11 | 1 | 698 | 1 | 758 | 2.33e-140 | 441 |
| MS.gene41427.t1 | MTR_5g010520 | 36.637 | 797 | 427 | 14 | 1 | 727 | 1 | 789 | 1.66e-139 | 437 |
| MS.gene41427.t1 | MTR_5g010520 | 36.637 | 797 | 427 | 14 | 1 | 727 | 1 | 789 | 3.84e-138 | 437 |
| MS.gene41427.t1 | MTR_5g010520 | 72.727 | 55 | 15 | 0 | 799 | 853 | 1007 | 1061 | 5.20e-15 | 80.1 |
| MS.gene41427.t1 | MTR_0415s0010 | 41.702 | 235 | 119 | 6 | 191 | 419 | 51 | 273 | 2.18e-37 | 142 |
| MS.gene41427.t1 | MTR_3g073620 | 27.930 | 401 | 218 | 10 | 5 | 342 | 7 | 399 | 6.01e-37 | 151 |
| MS.gene41427.t1 | MTR_0415s0020 | 40.000 | 210 | 126 | 0 | 489 | 698 | 18 | 227 | 6.12e-35 | 137 |
| MS.gene41427.t1 | MTR_1g062200 | 26.809 | 470 | 255 | 12 | 1 | 413 | 1 | 438 | 7.38e-25 | 112 |
| MS.gene41427.t1 | MTR_1g062200 | 26.809 | 470 | 255 | 12 | 1 | 413 | 1 | 438 | 8.11e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41427.t1 | AT5G52280 | 43.407 | 910 | 400 | 20 | 1 | 853 | 1 | 852 | 0.0 | 596 |
| MS.gene41427.t1 | AT5G41140 | 36.573 | 998 | 472 | 25 | 1 | 853 | 1 | 982 | 4.54e-157 | 485 |
| MS.gene41427.t1 | AT5G41140 | 36.474 | 987 | 481 | 23 | 1 | 853 | 1 | 975 | 4.82e-154 | 477 |
| MS.gene41427.t1 | AT1G63300 | 39.258 | 782 | 420 | 16 | 1 | 732 | 1 | 777 | 4.86e-139 | 439 |
| MS.gene41427.t1 | AT1G22060 | 26.131 | 685 | 404 | 16 | 5 | 616 | 7 | 662 | 8.20e-40 | 160 |
| MS.gene41427.t1 | AT1G22060 | 26.131 | 685 | 404 | 16 | 5 | 616 | 7 | 662 | 8.20e-40 | 160 |
Find 136 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTCTTGATTGCATTTC+TGG | 0.028652 | 1.4:+78385588 | None:intergenic |
| CTCAAATTCTGAACTTCTTT+TGG | 0.164026 | 1.4:-78386326 | MS.gene41427:CDS |
| TTCAAGATGGGACTTGTTTA+TGG | 0.179533 | 1.4:-78388172 | MS.gene41427:CDS |
| GCCCTTGAAATTTGCAAATT+CGG | 0.204924 | 1.4:-78387878 | MS.gene41427:CDS |
| TGAAAATCAAGTTAAGTCTT+TGG | 0.245483 | 1.4:-78385888 | MS.gene41427:CDS |
| CCCTTGAAATTTGCAAATTC+GGG | 0.262697 | 1.4:-78387877 | MS.gene41427:CDS |
| TATTCGTGTTCCTTTCCTTT+AGG | 0.264361 | 1.4:+78384376 | None:intergenic |
| TTGAATCTGTTAAACTTGTT+AGG | 0.276431 | 1.4:-78388136 | MS.gene41427:CDS |
| CAGGGACTCTTCTGCTTGAA+TGG | 0.294165 | 1.4:+78385781 | None:intergenic |
| GATCAAAGCTGTATTCAAAT+TGG | 0.298730 | 1.4:-78388512 | MS.gene41427:CDS |
| AATTCTCTATTTCACTATTC+TGG | 0.302012 | 1.4:+78386164 | None:intergenic |
| GAGTTCTGTCTGAAGCTATA+AGG | 0.304087 | 1.4:+78386877 | None:intergenic |
| ACAAAAGAATAAGGAAATAT+TGG | 0.304705 | 1.4:-78386275 | MS.gene41427:CDS |
| CTTGTTAGGGATTCAAAATC+AGG | 0.313625 | 1.4:-78388122 | MS.gene41427:CDS |
| TTGTAGGGTTCTTCAAAATC+TGG | 0.322934 | 1.4:-78387970 | MS.gene41427:intron |
| TATTGTGTCTCGTCTTTCTC+AGG | 0.325981 | 1.4:+78385762 | None:intergenic |
| AAAGGAAAGGAACACGAATA+TGG | 0.334534 | 1.4:-78384373 | MS.gene41427:CDS |
| GAATGCATTGATGGTATCTT+TGG | 0.340165 | 1.4:-78388243 | MS.gene41427:CDS |
| AAGGGCAGAGAAACAGTAAT+TGG | 0.340819 | 1.4:+78387895 | None:intergenic |
| AATGCTAGAACAAAAGAATA+AGG | 0.342812 | 1.4:-78386284 | MS.gene41427:CDS |
| CTGTACTGCCATAGCTCAAT+TGG | 0.348542 | 1.4:+78387199 | None:intergenic |
| TTCTTCAAAATCTGGCTACT+TGG | 0.349811 | 1.4:-78387962 | MS.gene41427:CDS |
| TCAGCATCAGATGGAAGTTT+AGG | 0.361910 | 1.4:-78386772 | MS.gene41427:CDS |
| TCAGTCCTGGGGTAGCTTCA+TGG | 0.364313 | 1.4:-78386906 | MS.gene41427:CDS |
| TTTGTTCTAGCATTGCTTCA+AGG | 0.366988 | 1.4:+78386293 | None:intergenic |
| CATTCAATAATTCCTTTGTA+AGG | 0.376479 | 1.4:+78384409 | None:intergenic |
| CAGATGGAAGTTTAGGTGAT+TGG | 0.379221 | 1.4:-78386765 | MS.gene41427:CDS |
| TCAAGATGGGACTTGTTTAT+GGG | 0.381612 | 1.4:-78388171 | MS.gene41427:CDS |
| GCCTCAACTGTTCCTCTTGG+TGG | 0.382303 | 1.4:+78386850 | None:intergenic |
| TATCGCATCTGAGCAGCTTC+AGG | 0.385097 | 1.4:-78385735 | MS.gene41427:CDS |
| CACAAAATCAAGTGCATAAG+AGG | 0.388926 | 1.4:-78386819 | MS.gene41427:CDS |
| GCTTCAGTTAGATGCAATAA+AGG | 0.391713 | 1.4:-78386413 | MS.gene41427:CDS |
| GAAGAGGCAGGCAGAATTAT+CGG | 0.394976 | 1.4:-78386644 | MS.gene41427:CDS |
| GCGGAACCACAACAGGCTTA+TGG | 0.395493 | 1.4:-78385621 | MS.gene41427:CDS |
| CAAGACAAATCAACGGTCTC+AGG | 0.396783 | 1.4:-78386558 | MS.gene41427:CDS |
| TGAATCTGTTAAACTTGTTA+GGG | 0.399721 | 1.4:-78388135 | MS.gene41427:CDS |
| GGAAACTGAACTGAAAGAAA+TGG | 0.401729 | 1.4:-78384352 | MS.gene41427:CDS |
| TATTGGATCTATCTTCCAAT+AGG | 0.408356 | 1.4:-78386258 | MS.gene41427:CDS |
| TTTCTTCTAGTCTCTTCACT+TGG | 0.412470 | 1.4:+78385966 | None:intergenic |
| AAACATATATCTCAATTAGA+AGG | 0.412778 | 1.4:-78385320 | MS.gene41427:CDS |
| GCCCGAATTTGCAAATTTCA+AGG | 0.415467 | 1.4:+78387876 | None:intergenic |
| GCATCAAATGGCATCAGTCC+TGG | 0.418524 | 1.4:-78386919 | MS.gene41427:CDS |
| TGTGTTTCATTTCATTGTGC+TGG | 0.418901 | 1.4:+78385381 | None:intergenic |
| GAAAGATTACAGGAGCCTTC+AGG | 0.428828 | 1.4:-78386712 | MS.gene41427:CDS |
| TGCAGAAATGGGGAAGATAA+TGG | 0.433442 | 1.4:-78387258 | MS.gene41427:intron |
| CTCATTGTCTCTTGAGGTCA+TGG | 0.434335 | 1.4:+78385223 | None:intergenic |
| ATTATTATTGAAGTTCTGTT+GGG | 0.435565 | 1.4:+78386492 | None:intergenic |
| TTACAGTTGCAACAATGAAA+TGG | 0.436006 | 1.4:+78388078 | None:intergenic |
| AGTTCTGTCTGAAGCTATAA+GGG | 0.436569 | 1.4:+78386878 | None:intergenic |
| ATGAATTGCGGAACCACAAC+AGG | 0.437283 | 1.4:-78385628 | MS.gene41427:CDS |
| GTCAAATACAGGCTGGTCAA+TGG | 0.441874 | 1.4:-78386797 | MS.gene41427:CDS |
| CAGTCCTGGGGTAGCTTCAT+GGG | 0.444592 | 1.4:-78386905 | MS.gene41427:CDS |
| GTTGGTTTCCCAACATCATC+TGG | 0.444751 | 1.4:+78388218 | None:intergenic |
| TTGGCCTCAACTGTTCCTCT+TGG | 0.447378 | 1.4:+78386847 | None:intergenic |
| TATTATTATTGAAGTTCTGT+TGG | 0.451599 | 1.4:+78386491 | None:intergenic |
| ATCGTCATTGGTCTCCATCA+AGG | 0.466927 | 1.4:-78385915 | MS.gene41427:CDS |
| TTCTTCTAGTCTCTTCACTT+GGG | 0.467384 | 1.4:+78385967 | None:intergenic |
| GCTGTACGTAATCTCAAGAA+TGG | 0.473934 | 1.4:-78384261 | MS.gene41427:CDS |
| AGAAGAAAAGATAGAGATGC+AGG | 0.477881 | 1.4:-78385951 | MS.gene41427:CDS |
| AGAAGCAGAATTAAATGCTA+TGG | 0.479810 | 1.4:-78385282 | MS.gene41427:CDS |
| TCAAATACAGGCTGGTCAAT+GGG | 0.480928 | 1.4:-78386796 | MS.gene41427:CDS |
| CATCAAATGGCATCAGTCCT+GGG | 0.483449 | 1.4:-78386918 | MS.gene41427:CDS |
| ATCAAAATCAGAAATGCATA+AGG | 0.483727 | 1.4:-78385177 | MS.gene41427:intron |
| GAATGAAGTGGCGGTCCTAA+AGG | 0.486341 | 1.4:-78384391 | MS.gene41427:CDS |
| ACAAAGGCACAGGGATGAAA+AGG | 0.486938 | 1.4:-78385441 | MS.gene41427:CDS |
| TGATGCATCGGATCTACTCT+TGG | 0.487712 | 1.4:+78386936 | None:intergenic |
| TCTGAAATTTGCAGAGGTAG+AGG | 0.487867 | 1.4:-78384307 | MS.gene41427:CDS |
| GTTACAAGCACTTCGGAAGC+AGG | 0.487924 | 1.4:-78386614 | MS.gene41427:CDS |
| AGTTTAGGTGATTGGACAAA+CGG | 0.490146 | 1.4:-78386757 | MS.gene41427:CDS |
| GTGAGATTGTTTCTCTGAAG+AGG | 0.495168 | 1.4:-78386660 | MS.gene41427:CDS |
| GGAGAAAGAACTGAGTATAC+AGG | 0.495561 | 1.4:-78385867 | MS.gene41427:CDS |
| GAGAAAACTGCTGTTCAAGA+TGG | 0.500999 | 1.4:-78388185 | MS.gene41427:CDS |
| TCTTCAAAATCTGGCTACTT+GGG | 0.505506 | 1.4:-78387961 | MS.gene41427:CDS |
| TAAATTTGAAGATGAACTCC+AGG | 0.505676 | 1.4:-78385840 | MS.gene41427:CDS |
| AAGAGACAATGAGGCTGCTA+AGG | 0.508811 | 1.4:-78385213 | MS.gene41427:CDS |
| AGCAGCCTCATTGTCTCTTG+AGG | 0.509235 | 1.4:+78385217 | None:intergenic |
| TTGAAGATGCACAAAGGCAC+AGG | 0.510046 | 1.4:-78385451 | MS.gene41427:CDS |
| ATTGTGTCTCGTCTTTCTCA+GGG | 0.510679 | 1.4:+78385763 | None:intergenic |
| GCTGTGGAAATTTATAATGA+TGG | 0.510768 | 1.4:-78387234 | MS.gene41427:CDS |
| CTTTGGTGCCAGATGATGTT+GGG | 0.511310 | 1.4:-78388226 | MS.gene41427:CDS |
| ACACAGTTTGCAGAAAGAAC+AGG | 0.512040 | 1.4:-78385363 | MS.gene41427:CDS |
| TTTCTTCCATAAGCCTGTTG+TGG | 0.519288 | 1.4:+78385615 | None:intergenic |
| AGATCAACATGAATTGAAAG+TGG | 0.519867 | 1.4:-78385555 | MS.gene41427:CDS |
| AGTAGATCCGATGCATCAAA+TGG | 0.520711 | 1.4:-78386931 | MS.gene41427:CDS |
| CCCGAATTTGCAAATTTCAA+GGG | 0.521489 | 1.4:+78387877 | None:intergenic |
| CTGAAATTTGCAGAGGTAGA+GGG | 0.524057 | 1.4:-78384306 | MS.gene41427:CDS |
| AGAAAGACAACAGCTTGTTA+TGG | 0.526698 | 1.4:-78384283 | MS.gene41427:CDS |
| AAAGGAATTATTGAATGAAG+TGG | 0.532662 | 1.4:-78384403 | MS.gene41427:CDS |
| AGAAATGCAATCAAGAGCTC+AGG | 0.533105 | 1.4:-78385586 | MS.gene41427:CDS |
| AGTCTGATATTGATAATACT+AGG | 0.533275 | 1.4:-78386435 | MS.gene41427:CDS |
| CTGAAAACATGTTCAAGTCA+TGG | 0.540034 | 1.4:-78388549 | None:intergenic |
| ATTGGAATTTCAAGCAACTC+AGG | 0.543027 | 1.4:-78388494 | MS.gene41427:intron |
| AGAAAACTGCTGTTCAAGAT+GGG | 0.543774 | 1.4:-78388184 | MS.gene41427:CDS |
| GATTGTTTCTCTGAAGAGGC+AGG | 0.546222 | 1.4:-78386656 | MS.gene41427:CDS |
| GGCTCCTGTAATCTTTCTCT+CGG | 0.547618 | 1.4:+78386718 | None:intergenic |
| TTACAGGAGCCTTCAGGCAA+TGG | 0.549125 | 1.4:-78386706 | MS.gene41427:CDS |
| CTCAAGAATAACAGAGGACG+AGG | 0.553689 | 1.4:-78385251 | MS.gene41427:CDS |
| ACTGATGCCATTTGATGCAT+CGG | 0.558366 | 1.4:+78386924 | None:intergenic |
| GTGGCATTGCCATTGCCTGA+AGG | 0.565313 | 1.4:+78386697 | None:intergenic |
| GTGCATAAGAGGTCAAATAC+AGG | 0.566002 | 1.4:-78386808 | MS.gene41427:CDS |
| GGAATGGATGCAGCAAGCAC+TGG | 0.569706 | 1.4:-78384640 | MS.gene41427:CDS |
| TCATCCCATGAAGCTACCCC+AGG | 0.575983 | 1.4:+78386901 | None:intergenic |
| TATCTTATAGAATAGCAACT+TGG | 0.578135 | 1.4:-78386959 | MS.gene41427:intron |
| CATGTTACAAAATGAACACT+CGG | 0.582030 | 1.4:-78386020 | MS.gene41427:CDS |
| TCTTTGGTGCCAGATGATGT+TGG | 0.584848 | 1.4:-78388227 | MS.gene41427:CDS |
| TTGAAACACCAATTGAGCTA+TGG | 0.589258 | 1.4:-78387207 | MS.gene41427:CDS |
| TATATCTCAATTAGAAGGAG+AGG | 0.593443 | 1.4:-78385315 | MS.gene41427:CDS |
| ACAGGTAACTATTCAGAATG+TGG | 0.594916 | 1.4:-78387394 | MS.gene41427:intron |
| CGCATCTGAGCAGCTTCAGG+AGG | 0.596198 | 1.4:-78385732 | MS.gene41427:CDS |
| GTAACTATTCAGAATGTGGA+AGG | 0.605000 | 1.4:-78387390 | MS.gene41427:CDS |
| CTACCTTATTTGCAGAAATG+GGG | 0.605496 | 1.4:-78387268 | MS.gene41427:intron |
| AAGTGGCGGTCCTAAAGGAA+AGG | 0.605693 | 1.4:-78384386 | MS.gene41427:CDS |
| TCGAAGAAGCTGATGAATTG+CGG | 0.607639 | 1.4:-78385640 | MS.gene41427:CDS |
| TCTTCTTAAGAATGAAAATG+TGG | 0.611817 | 1.4:-78386083 | MS.gene41427:CDS |
| GATTAGTCTGAAATTTGCAG+AGG | 0.613349 | 1.4:-78384313 | MS.gene41427:CDS |
| TCAATGGGTTCAGCATCAGA+TGG | 0.615920 | 1.4:-78386781 | MS.gene41427:CDS |
| AAGACAAATCAACGGTCTCA+GGG | 0.626387 | 1.4:-78386557 | MS.gene41427:CDS |
| TGGGGAAGATAATGGTGCTG+TGG | 0.626676 | 1.4:-78387250 | MS.gene41427:CDS |
| ATAAGAGGTCAAATACAGGC+TGG | 0.635907 | 1.4:-78386804 | MS.gene41427:CDS |
| AACTAGAGTTACAAGCACTT+CGG | 0.636170 | 1.4:-78386621 | MS.gene41427:CDS |
| ACTGGTATTAGCAAGTCTGA+AGG | 0.642094 | 1.4:-78384622 | MS.gene41427:CDS |
| TGAAGATGCACAAAGGCACA+GGG | 0.646468 | 1.4:-78385450 | MS.gene41427:CDS |
| CAGTTTGCAGAAAGAACAGG+TGG | 0.646980 | 1.4:-78385360 | MS.gene41427:CDS |
| TGATGCTGAACGCCTTACAA+AGG | 0.649461 | 1.4:-78384421 | MS.gene41427:CDS |
| GTATTAGCAAGTCTGAAGGA+AGG | 0.654276 | 1.4:-78384618 | MS.gene41427:intron |
| GGAATTATTGAATGAAGTGG+CGG | 0.655168 | 1.4:-78384400 | MS.gene41427:CDS |
| CATGACCTCAAGAGACAATG+AGG | 0.664100 | 1.4:-78385222 | MS.gene41427:CDS |
| ATCAAATGGCATCAGTCCTG+GGG | 0.667145 | 1.4:-78386917 | MS.gene41427:CDS |
| TGGAAGGATATACTGCCGAA+AGG | 0.668488 | 1.4:-78387374 | MS.gene41427:intron |
| CAGAACTCAATGCCACCAAG+AGG | 0.670351 | 1.4:-78386862 | MS.gene41427:CDS |
| AAGAAGCTCAAGAATAACAG+AGG | 0.670995 | 1.4:-78385257 | MS.gene41427:CDS |
| GCCACCAAGAGGAACAGTTG+AGG | 0.674754 | 1.4:-78386851 | MS.gene41427:CDS |
| AAGAACTTGAAGATGCACAA+AGG | 0.694127 | 1.4:-78385457 | MS.gene41427:CDS |
| AATTTATCAAGACAAATCAA+CGG | 0.718250 | 1.4:-78386565 | MS.gene41427:CDS |
| GAATTGTTATAAGCAACGCG+AGG | 0.741429 | 1.4:-78386146 | MS.gene41427:CDS |
| GCTTATAAAAGAGCTCACAG+TGG | 0.747992 | 1.4:-78386113 | MS.gene41427:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAACAAAATATATTATTA+TGG | + | chr1.4:78388112-78388131 | None:intergenic | 10.0% |
| !!! | AAACTAACTTTTATTATTTT+TGG | - | chr1.4:78388328-78388347 | MS.gene41427:intron | 10.0% |
| !!! | AAAGTTTAAATCTTTTTTTA+TGG | - | chr1.4:78384792-78384811 | MS.gene41427:intron | 10.0% |
| !!! | AAATAATAAAAGTTAGTTTT+TGG | + | chr1.4:78388327-78388346 | None:intergenic | 10.0% |
| !!! | GTAAATATAATTTTATTCAA+TGG | + | chr1.4:78385795-78385814 | None:intergenic | 10.0% |
| !!! | TACAATAACATTTTTTATTT+TGG | - | chr1.4:78387849-78387868 | MS.gene41427:intron | 10.0% |
| !! | AATGTAAAATGATTTATGTT+TGG | - | chr1.4:78385120-78385139 | MS.gene41427:intron | 15.0% |
| !! | TTAATATCTGATAATAAGTA+TGG | + | chr1.4:78387652-78387671 | None:intergenic | 15.0% |
| !!! | TGATTTTGTAAAATTGATTA+TGG | - | chr1.4:78385084-78385103 | MS.gene41427:intron | 15.0% |
| !!! | TTTTTCATTATACAACAATT+AGG | + | chr1.4:78384384-78384403 | None:intergenic | 15.0% |
| !! | AAACATATATCTCAATTAGA+AGG | - | chr1.4:78387469-78387488 | MS.gene41427:intron | 20.0% |
| !! | AAGTACAAAAGAAAAAACAA+TGG | - | chr1.4:78387276-78387295 | MS.gene41427:intron | 20.0% |
| !! | AATTTATCAAGACAAATCAA+CGG | - | chr1.4:78386224-78386243 | MS.gene41427:CDS | 20.0% |
| !! | ACAAAAGAATAAGGAAATAT+TGG | - | chr1.4:78386514-78386533 | MS.gene41427:CDS | 20.0% |
| !! | AGTTTAACAGATTCAAAAAT+TGG | + | chr1.4:78384649-78384668 | None:intergenic | 20.0% |
| !! | ATTATTATTGAAGTTCTGTT+GGG | + | chr1.4:78386300-78386319 | None:intergenic | 20.0% |
| !! | TATTATTATTGAAGTTCTGT+TGG | + | chr1.4:78386301-78386320 | None:intergenic | 20.0% |
| !!! | ATTGTTTTGTACTTAAAAGA+AGG | - | chr1.4:78384756-78384775 | MS.gene41427:intron | 20.0% |
| !!! | TGATTTTTGTAACATGAAAA+GGG | - | chr1.4:78388128-78388147 | MS.gene41427:CDS | 20.0% |
| !!! | TTGATTTTTGTAACATGAAA+AGG | - | chr1.4:78388127-78388146 | MS.gene41427:CDS | 20.0% |
| !!! | TTTTTTTATGGATTCTTGTA+GGG | - | chr1.4:78384804-78384823 | MS.gene41427:intron | 20.0% |
| ! | AAAGGAATTATTGAATGAAG+TGG | - | chr1.4:78388386-78388405 | MS.gene41427:intron | 25.0% |
| ! | AATGCTAGAACAAAAGAATA+AGG | - | chr1.4:78386505-78386524 | MS.gene41427:CDS | 25.0% |
| ! | AATTCTCTATTTCACTATTC+TGG | + | chr1.4:78386628-78386647 | None:intergenic | 25.0% |
| ! | ACACTATCAAATCTGAAAAT+GGG | - | chr1.4:78384352-78384371 | MS.gene41427:CDS | 25.0% |
| ! | AGTAATAACCTTAGAATCTA+GGG | - | chr1.4:78387786-78387805 | MS.gene41427:intron | 25.0% |
| ! | AGTTAGTACTCACAATAAAA+AGG | - | chr1.4:78387752-78387771 | MS.gene41427:intron | 25.0% |
| ! | ATCAAAATCAGAAATGCATA+AGG | - | chr1.4:78387612-78387631 | MS.gene41427:intron | 25.0% |
| ! | ATGAAAAAAACATGTTTCCT+AGG | - | chr1.4:78384396-78384415 | MS.gene41427:CDS | 25.0% |
| ! | CAAAGGAAAAATTATTGCAA+TGG | + | chr1.4:78385473-78385492 | None:intergenic | 25.0% |
| ! | CATCCATATAACAAAACATT+TGG | - | chr1.4:78388262-78388281 | MS.gene41427:CDS | 25.0% |
| ! | CATTCAATAATTCCTTTGTA+AGG | + | chr1.4:78388383-78388402 | None:intergenic | 25.0% |
| ! | GTTAAATTAACTGTAGGTTA+TGG | + | chr1.4:78385451-78385470 | None:intergenic | 25.0% |
| ! | GTTTATGAAAAAGAAATGAG+TGG | - | chr1.4:78386407-78386426 | MS.gene41427:CDS | 25.0% |
| ! | TAAAAGAAGGATATGTTGAT+TGG | - | chr1.4:78384769-78384788 | MS.gene41427:intron | 25.0% |
| ! | TACACTATCAAATCTGAAAA+TGG | - | chr1.4:78384351-78384370 | MS.gene41427:CDS | 25.0% |
| ! | TAGTAATAACCTTAGAATCT+AGG | - | chr1.4:78387785-78387804 | MS.gene41427:intron | 25.0% |
| ! | TATCTTATAGAATAGCAACT+TGG | - | chr1.4:78385830-78385849 | MS.gene41427:CDS | 25.0% |
| ! | TCAAATGAATAAATCCAAAC+AGG | + | chr1.4:78385687-78385706 | None:intergenic | 25.0% |
| ! | TCTTCTTAAGAATGAAAATG+TGG | - | chr1.4:78386706-78386725 | MS.gene41427:CDS | 25.0% |
| ! | TGAAAATCAAGTTAAGTCTT+TGG | - | chr1.4:78386901-78386920 | MS.gene41427:CDS | 25.0% |
| ! | TGTGGTGATAATATATAACA+AGG | - | chr1.4:78387978-78387997 | MS.gene41427:intron | 25.0% |
| !! | AATTTTATCTCCTTCAAAAG+TGG | - | chr1.4:78385228-78385247 | MS.gene41427:CDS | 25.0% |
| !! | ACACAGAATTAAATGTTTTG+CGG | - | chr1.4:78386588-78386607 | MS.gene41427:CDS | 25.0% |
| !! | AGTCTGATATTGATAATACT+AGG | - | chr1.4:78386354-78386373 | MS.gene41427:CDS | 25.0% |
| !! | TTGAATCTGTTAAACTTGTT+AGG | - | chr1.4:78384653-78384672 | MS.gene41427:intron | 25.0% |
| !!! | AATCTCACTTTTGAGATTTT+CGG | + | chr1.4:78386117-78386136 | None:intergenic | 25.0% |
| !!! | AATCTTTTGAGATTTCCTAT+TGG | + | chr1.4:78386549-78386568 | None:intergenic | 25.0% |
| !!! | AATGCATTCTTTTTCATCTT+TGG | + | chr1.4:78384535-78384554 | None:intergenic | 25.0% |
| !!! | CAAATGTTTTGTTATATGGA+TGG | + | chr1.4:78388264-78388283 | None:intergenic | 25.0% |
| !!! | CTTTTTTTATGGATTCTTGT+AGG | - | chr1.4:78384803-78384822 | MS.gene41427:intron | 25.0% |
| !!! | GAAAAGTGTACATATCATTT+TGG | + | chr1.4:78387822-78387841 | None:intergenic | 25.0% |
| !!! | GTATGAATCTGATTTTGATT+AGG | - | chr1.4:78384507-78384526 | MS.gene41427:intron | 25.0% |
| !!! | TGAATCTGTTAAACTTGTTA+GGG | - | chr1.4:78384654-78384673 | MS.gene41427:intron | 25.0% |
| AAATTCAACTGTAATGAGTG+AGG | - | chr1.4:78387950-78387969 | MS.gene41427:CDS | 30.0% | |
| AAGAAAGTAAGAGAGATAGA+GGG | + | chr1.4:78384958-78384977 | None:intergenic | 30.0% | |
| AATTCAACTGTAATGAGTGA+GGG | - | chr1.4:78387951-78387970 | MS.gene41427:CDS | 30.0% | |
| AGAAGCAGAATTAAATGCTA+TGG | - | chr1.4:78387507-78387526 | MS.gene41427:intron | 30.0% | |
| AGATCAACATGAATTGAAAG+TGG | - | chr1.4:78387234-78387253 | MS.gene41427:CDS | 30.0% | |
| ATACACTAAGAATCAGTGTT+TGG | - | chr1.4:78385259-78385278 | MS.gene41427:CDS | 30.0% | |
| CAATTCTTATGTGAGAAGTT+AGG | + | chr1.4:78385370-78385389 | None:intergenic | 30.0% | |
| CACTATCAAATCTGAAAATG+GGG | - | chr1.4:78384353-78384372 | MS.gene41427:CDS | 30.0% | |
| CATGTTACAAAATGAACACT+CGG | - | chr1.4:78386769-78386788 | MS.gene41427:CDS | 30.0% | |
| CTAAACAGAAACTTCTAACA+AGG | - | chr1.4:78385749-78385768 | MS.gene41427:CDS | 30.0% | |
| CTTAAGTAGTGCTAAAGATT+AGG | + | chr1.4:78385032-78385051 | None:intergenic | 30.0% | |
| GATCAAAGCTGTATTCAAAT+TGG | - | chr1.4:78384277-78384296 | MS.gene41427:CDS | 30.0% | |
| GATGAAAAAGAATGCATTGA+TGG | - | chr1.4:78384537-78384556 | MS.gene41427:intron | 30.0% | |
| GCAATGGTTAAATTAACTGT+AGG | + | chr1.4:78385457-78385476 | None:intergenic | 30.0% | |
| GCTGTGGAAATTTATAATGA+TGG | - | chr1.4:78385555-78385574 | MS.gene41427:CDS | 30.0% | |
| GTGTAAATTTCAAACATCCT+AGG | + | chr1.4:78384416-78384435 | None:intergenic | 30.0% | |
| GTTACAATCTTGATGAAGTA+AGG | - | chr1.4:78385619-78385638 | MS.gene41427:CDS | 30.0% | |
| TAAATTTGAAGATGAACTCC+AGG | - | chr1.4:78386949-78386968 | MS.gene41427:CDS | 30.0% | |
| TATATCTCAATTAGAAGGAG+AGG | - | chr1.4:78387474-78387493 | MS.gene41427:intron | 30.0% | |
| TATTGGATCTATCTTCCAAT+AGG | - | chr1.4:78386531-78386550 | MS.gene41427:CDS | 30.0% | |
| TTACAGTTGCAACAATGAAA+TGG | + | chr1.4:78384714-78384733 | None:intergenic | 30.0% | |
| TTGTTATATGGATGGTAAGA+GGG | + | chr1.4:78388256-78388275 | None:intergenic | 30.0% | |
| TTTGTAACATGAAAAGGGAA+TGG | - | chr1.4:78388133-78388152 | MS.gene41427:CDS | 30.0% | |
| ! | AGATGAATTTTCATCGTCAT+TGG | - | chr1.4:78386862-78386881 | MS.gene41427:CDS | 30.0% |
| ! | CTCAAATTCTGAACTTCTTT+TGG | - | chr1.4:78386463-78386482 | MS.gene41427:CDS | 30.0% |
| ! | GGAGATAAAATTGATTCTAG+AGG | + | chr1.4:78385220-78385239 | None:intergenic | 30.0% |
| ! | TCTACCTTATTTGCAGAAAT+GGG | - | chr1.4:78385520-78385539 | MS.gene41427:CDS | 30.0% |
| ! | TTTGTTATATGGATGGTAAG+AGG | + | chr1.4:78388257-78388276 | None:intergenic | 30.0% |
| !! | GCACCAAATGTTTTGTTATA+TGG | + | chr1.4:78388268-78388287 | None:intergenic | 30.0% |
| !!! | GTAGAGTTTTTAGTGCATTT+AGG | + | chr1.4:78385505-78385524 | None:intergenic | 30.0% |
| !!! | TTGATTTTCAAGTTCCTTGA+TGG | + | chr1.4:78386891-78386910 | None:intergenic | 30.0% |
| !!! | TTTTTTCATTTTGCATAGCC+TGG | + | chr1.4:78386970-78386989 | None:intergenic | 30.0% |
| AAAAAACTGAGCAGGAAGAA+CGG | - | chr1.4:78386984-78387003 | MS.gene41427:intron | 35.0% | |
| AAAGGAAAGGAACACGAATA+TGG | - | chr1.4:78388416-78388435 | MS.gene41427:intron | 35.0% | |
| AACTAGAGTTACAAGCACTT+CGG | - | chr1.4:78386168-78386187 | MS.gene41427:CDS | 35.0% | |
| AAGAACTTGAAGATGCACAA+AGG | - | chr1.4:78387332-78387351 | MS.gene41427:intron | 35.0% | |
| AAGAAGCTCAAGAATAACAG+AGG | - | chr1.4:78387532-78387551 | MS.gene41427:intron | 35.0% | |
| AAGAATCAGTGTTTGGACAT+TGG | - | chr1.4:78385266-78385285 | MS.gene41427:CDS | 35.0% | |
| AATGCATAAGGTAATTGCTC+AGG | - | chr1.4:78387624-78387643 | MS.gene41427:intron | 35.0% | |
| AATTCTATTAAGCGCCTGTT+TGG | - | chr1.4:78385670-78385689 | MS.gene41427:CDS | 35.0% | |
| ACAGGTAACTATTCAGAATG+TGG | - | chr1.4:78385395-78385414 | MS.gene41427:CDS | 35.0% | |
| ACTTATTGACGTCGCATATT+AGG | - | chr1.4:78387678-78387697 | MS.gene41427:intron | 35.0% | |
| AGAAAACTGCTGTTCAAGAT+GGG | - | chr1.4:78384605-78384624 | MS.gene41427:intron | 35.0% | |
| AGAAGAAAAGATAGAGATGC+AGG | - | chr1.4:78386838-78386857 | MS.gene41427:CDS | 35.0% | |
| AGATTAGGAGAGGAATAATG+TGG | + | chr1.4:78385017-78385036 | None:intergenic | 35.0% | |
| AGGTAGAAAAAGAAAGCAGT+CGG | - | chr1.4:78386195-78386214 | MS.gene41427:CDS | 35.0% | |
| AGTTTAGGTGATTGGACAAA+CGG | - | chr1.4:78386032-78386051 | MS.gene41427:CDS | 35.0% | |
| ATAACACAAATACGACGTTG+TGG | + | chr1.4:78388290-78388309 | None:intergenic | 35.0% | |
| ATTGGAATTTCAAGCAACTC+AGG | - | chr1.4:78384295-78384314 | MS.gene41427:CDS | 35.0% | |
| CAAGAAAGTAAGAGAGATAG+AGG | + | chr1.4:78384959-78384978 | None:intergenic | 35.0% | |
| CACAAAATCAAGTGCATAAG+AGG | - | chr1.4:78385970-78385989 | MS.gene41427:CDS | 35.0% | |
| CACATAAGAATTGTCGAAAC+AGG | - | chr1.4:78385377-78385396 | MS.gene41427:CDS | 35.0% | |
| CATTTAGGAGTGAAAGTCAA+AGG | + | chr1.4:78385490-78385509 | None:intergenic | 35.0% | |
| CCCGAATTTGCAAATTTCAA+GGG | + | chr1.4:78384915-78384934 | None:intergenic | 35.0% | |
| CCCTTGAAATTTGCAAATTC+GGG | - | chr1.4:78384912-78384931 | MS.gene41427:intron | 35.0% | |
| CTTGTTAGGGATTCAAAATC+AGG | - | chr1.4:78384667-78384686 | MS.gene41427:intron | 35.0% | |
| GATTAGGAGAGGAATAATGT+GGG | + | chr1.4:78385016-78385035 | None:intergenic | 35.0% | |
| GATTGTGTTAAAGGGAACAA+GGG | + | chr1.4:78388228-78388247 | None:intergenic | 35.0% | |
| GCAAAATGAAAAAACTGAGC+AGG | - | chr1.4:78386976-78386995 | MS.gene41427:intron | 35.0% | |
| GCATATTAGGACAGGTTAAA+TGG | - | chr1.4:78387691-78387710 | MS.gene41427:intron | 35.0% | |
| GCCCTTGAAATTTGCAAATT+CGG | - | chr1.4:78384911-78384930 | MS.gene41427:intron | 35.0% | |
| GCTTCAGTTAGATGCAATAA+AGG | - | chr1.4:78386376-78386395 | MS.gene41427:CDS | 35.0% | |
| GGAAACTGAACTGAAAGAAA+TGG | - | chr1.4:78388437-78388456 | MS.gene41427:intron | 35.0% | |
| GGAATTATTGAATGAAGTGG+CGG | - | chr1.4:78388389-78388408 | MS.gene41427:intron | 35.0% | |
| GTAACTATTCAGAATGTGGA+AGG | - | chr1.4:78385399-78385418 | MS.gene41427:CDS | 35.0% | |
| TATGGTTCATCTTCACCTTT+CGG | + | chr1.4:78385433-78385452 | None:intergenic | 35.0% | |
| TATTCGTGTTCCTTTCCTTT+AGG | + | chr1.4:78388416-78388435 | None:intergenic | 35.0% | |
| TCTTCAAAATCTGGCTACTT+GGG | - | chr1.4:78384828-78384847 | MS.gene41427:intron | 35.0% | |
| TGTGTTTCATTTCATTGTGC+TGG | + | chr1.4:78387411-78387430 | None:intergenic | 35.0% | |
| TTCTTCAAAATCTGGCTACT+TGG | - | chr1.4:78384827-78384846 | MS.gene41427:intron | 35.0% | |
| TTCTTCTAGTCTCTTCACTT+GGG | + | chr1.4:78386825-78386844 | None:intergenic | 35.0% | |
| TTGAAACACCAATTGAGCTA+TGG | - | chr1.4:78385582-78385601 | MS.gene41427:CDS | 35.0% | |
| TTGTAGGGTTCTTCAAAATC+TGG | - | chr1.4:78384819-78384838 | MS.gene41427:intron | 35.0% | |
| TTTCTTCTAGTCTCTTCACT+TGG | + | chr1.4:78386826-78386845 | None:intergenic | 35.0% | |
| TTTGTTCTAGCATTGCTTCA+AGG | + | chr1.4:78386499-78386518 | None:intergenic | 35.0% | |
| ! | AGTTCTGTCTGAAGCTATAA+GGG | + | chr1.4:78385914-78385933 | None:intergenic | 35.0% |
| ! | ATCAGACTTCAAGCTTTTAG+AGG | + | chr1.4:78386342-78386361 | None:intergenic | 35.0% |
| ! | CACTTGATTTTGTGTTGCAT+TGG | + | chr1.4:78385964-78385983 | None:intergenic | 35.0% |
| ! | CTACCTTATTTGCAGAAATG+GGG | - | chr1.4:78385521-78385540 | MS.gene41427:CDS | 35.0% |
| ! | CTCTACCTTATTTGCAGAAA+TGG | - | chr1.4:78385519-78385538 | MS.gene41427:CDS | 35.0% |
| ! | GAATGCATTGATGGTATCTT+TGG | - | chr1.4:78384546-78384565 | MS.gene41427:intron | 35.0% |
| ! | TCAAGATGGGACTTGTTTAT+GGG | - | chr1.4:78384618-78384637 | MS.gene41427:intron | 35.0% |
| ! | TTCAAGATGGGACTTGTTTA+TGG | - | chr1.4:78384617-78384636 | MS.gene41427:intron | 35.0% |
| ! | TTTTCCGAGAGAAAGATTAC+AGG | - | chr1.4:78386067-78386086 | MS.gene41427:CDS | 35.0% |
| !! | AACAGTTTTGTAGTGAGTGA+GGG | - | chr1.4:78387891-78387910 | MS.gene41427:CDS | 35.0% |
| !! | AGAAAGACAACAGCTTGTTA+TGG | - | chr1.4:78388506-78388525 | MS.gene41427:CDS | 35.0% |
| !! | ATGTGAAGTTCCACTTTTGA+AGG | + | chr1.4:78385241-78385260 | None:intergenic | 35.0% |
| !! | GATTAGTCTGAAATTTGCAG+AGG | - | chr1.4:78388476-78388495 | MS.gene41427:intron | 35.0% |
| !! | GTTTTCTCTAGTTTCACTGT+TGG | + | chr1.4:78384592-78384611 | None:intergenic | 35.0% |
| AAAAACTGAGCAGGAAGAAC+GGG | - | chr1.4:78386985-78387004 | MS.gene41427:intron | 40.0% | |
| AAGACAAATCAACGGTCTCA+GGG | - | chr1.4:78386232-78386251 | MS.gene41427:CDS | 40.0% | |
| AAGGGCAGAGAAACAGTAAT+TGG | + | chr1.4:78384897-78384916 | None:intergenic | 40.0% | |
| AATCAGTGTTTGGACATTGG+TGG | - | chr1.4:78385269-78385288 | MS.gene41427:CDS | 40.0% | |
| ACACAGTTTGCAGAAAGAAC+AGG | - | chr1.4:78387426-78387445 | MS.gene41427:intron | 40.0% | |
| ACTGAACTCCCTAGATTCTA+AGG | + | chr1.4:78387797-78387816 | None:intergenic | 40.0% | |
| ACTGGTATTAGCAAGTCTGA+AGG | - | chr1.4:78388167-78388186 | MS.gene41427:CDS | 40.0% | |
| AGAAATGCAATCAAGAGCTC+AGG | - | chr1.4:78387203-78387222 | MS.gene41427:CDS | 40.0% | |
| AGTAGATCCGATGCATCAAA+TGG | - | chr1.4:78385858-78385877 | MS.gene41427:CDS | 40.0% | |
| ATAAGAGGTCAAATACAGGC+TGG | - | chr1.4:78385985-78386004 | MS.gene41427:CDS | 40.0% | |
| ATCAGTGTTTGGACATTGGT+GGG | - | chr1.4:78385270-78385289 | MS.gene41427:CDS | 40.0% | |
| ATTGTGTCTCGTCTTTCTCA+GGG | + | chr1.4:78387029-78387048 | None:intergenic | 40.0% | |
| CAGATGGAAGTTTAGGTGAT+TGG | - | chr1.4:78386024-78386043 | MS.gene41427:CDS | 40.0% | |
| CTGAAATTTGCAGAGGTAGA+GGG | - | chr1.4:78388483-78388502 | MS.gene41427:intron | 40.0% | |
| CTTCCCCATTTCTGCAAATA+AGG | + | chr1.4:78385527-78385546 | None:intergenic | 40.0% | |
| GAATTGTTATAAGCAACGCG+AGG | - | chr1.4:78386643-78386662 | MS.gene41427:CDS | 40.0% | |
| GAGAAAACTGCTGTTCAAGA+TGG | - | chr1.4:78384604-78384623 | MS.gene41427:intron | 40.0% | |
| GCCCGAATTTGCAAATTTCA+AGG | + | chr1.4:78384916-78384935 | None:intergenic | 40.0% | |
| GCTGTACGTAATCTCAAGAA+TGG | - | chr1.4:78388528-78388547 | MS.gene41427:CDS | 40.0% | |
| GCTTATAAAAGAGCTCACAG+TGG | - | chr1.4:78386676-78386695 | MS.gene41427:CDS | 40.0% | |
| GGAGAAAGAACTGAGTATAC+AGG | - | chr1.4:78386922-78386941 | MS.gene41427:CDS | 40.0% | |
| GGGTTAACGTTAGAATCTCA+TGG | - | chr1.4:78387911-78387930 | MS.gene41427:CDS | 40.0% | |
| GGTAGAAAAAGAAAGCAGTC+GGG | - | chr1.4:78386196-78386215 | MS.gene41427:CDS | 40.0% | |
| GTAATGAGTGAGGGTTAATG+TGG | - | chr1.4:78387960-78387979 | MS.gene41427:CDS | 40.0% | |
| GTAGAAAAAGAAAGCAGTCG+GGG | - | chr1.4:78386197-78386216 | MS.gene41427:CDS | 40.0% | |
| GTAGTGCTAAAGATTAGGAG+AGG | + | chr1.4:78385027-78385046 | None:intergenic | 40.0% | |
| GTATTAGCAAGTCTGAAGGA+AGG | - | chr1.4:78388171-78388190 | MS.gene41427:CDS | 40.0% | |
| GTGCATAAGAGGTCAAATAC+AGG | - | chr1.4:78385981-78386000 | MS.gene41427:CDS | 40.0% | |
| TATTGTGTCTCGTCTTTCTC+AGG | + | chr1.4:78387030-78387049 | None:intergenic | 40.0% | |
| TCAGCATCACTGTCAGAATT+AGG | + | chr1.4:78388357-78388376 | None:intergenic | 40.0% | |
| TCAGCATCAGATGGAAGTTT+AGG | - | chr1.4:78386017-78386036 | MS.gene41427:CDS | 40.0% | |
| TCGAAGAAGCTGATGAATTG+CGG | - | chr1.4:78387149-78387168 | MS.gene41427:intron | 40.0% | |
| TGAGCTCTTGATTGCATTTC+TGG | + | chr1.4:78387204-78387223 | None:intergenic | 40.0% | |
| TGCAGAAATGGGGAAGATAA+TGG | - | chr1.4:78385531-78385550 | MS.gene41427:CDS | 40.0% | |
| TTTCTTCCATAAGCCTGTTG+TGG | + | chr1.4:78387177-78387196 | None:intergenic | 40.0% | |
| ! | ACTGATGCCATTTGATGCAT+CGG | + | chr1.4:78385868-78385887 | None:intergenic | 40.0% |
| ! | GAGTTCTGTCTGAAGCTATA+AGG | + | chr1.4:78385915-78385934 | None:intergenic | 40.0% |
| ! | GTGAGATTGTTTCTCTGAAG+AGG | - | chr1.4:78386129-78386148 | MS.gene41427:CDS | 40.0% |
| ! | TCAAATACAGGCTGGTCAAT+GGG | - | chr1.4:78385993-78386012 | MS.gene41427:CDS | 40.0% |
| ! | TCTGAAATTTGCAGAGGTAG+AGG | - | chr1.4:78388482-78388501 | MS.gene41427:intron | 40.0% |
| !! | CTTCAAGCTTTTAGAGGTCT+TGG | + | chr1.4:78386336-78386355 | None:intergenic | 40.0% |
| !! | GAACAGTTTTGTAGTGAGTG+AGG | - | chr1.4:78387890-78387909 | MS.gene41427:CDS | 40.0% |
| !!! | CTCACTTTTGAGATTTTCGG+TGG | + | chr1.4:78386114-78386133 | None:intergenic | 40.0% |
| AAGAGACAATGAGGCTGCTA+AGG | - | chr1.4:78387576-78387595 | MS.gene41427:intron | 45.0% | |
| AAGGGAACAAGGGATTCAGA+TGG | + | chr1.4:78388218-78388237 | None:intergenic | 45.0% | |
| ATCAAATGGCATCAGTCCTG+GGG | - | chr1.4:78385872-78385891 | MS.gene41427:CDS | 45.0% | |
| ATGAATTGCGGAACCACAAC+AGG | - | chr1.4:78387161-78387180 | MS.gene41427:intron | 45.0% | |
| CAAGACAAATCAACGGTCTC+AGG | - | chr1.4:78386231-78386250 | MS.gene41427:CDS | 45.0% | |
| CAGTTTGCAGAAAGAACAGG+TGG | - | chr1.4:78387429-78387448 | MS.gene41427:intron | 45.0% | |
| CATCAAATGGCATCAGTCCT+GGG | - | chr1.4:78385871-78385890 | MS.gene41427:CDS | 45.0% | |
| CATGACCTCAAGAGACAATG+AGG | - | chr1.4:78387567-78387586 | MS.gene41427:intron | 45.0% | |
| CTCAAGAATAACAGAGGACG+AGG | - | chr1.4:78387538-78387557 | MS.gene41427:intron | 45.0% | |
| CTCATTGTCTCTTGAGGTCA+TGG | + | chr1.4:78387569-78387588 | None:intergenic | 45.0% | |
| CTGTACTGCCATAGCTCAAT+TGG | + | chr1.4:78385593-78385612 | None:intergenic | 45.0% | |
| GAAAGATTACAGGAGCCTTC+AGG | - | chr1.4:78386077-78386096 | MS.gene41427:CDS | 45.0% | |
| GAAGAGGCAGGCAGAATTAT+CGG | - | chr1.4:78386145-78386164 | MS.gene41427:CDS | 45.0% | |
| GGCTCCTGTAATCTTTCTCT+CGG | + | chr1.4:78386074-78386093 | None:intergenic | 45.0% | |
| TGATGCATCGGATCTACTCT+TGG | + | chr1.4:78385856-78385875 | None:intergenic | 45.0% | |
| TGATGCTGAACGCCTTACAA+AGG | - | chr1.4:78388368-78388387 | MS.gene41427:intron | 45.0% | |
| TGGAAGGATATACTGCCGAA+AGG | - | chr1.4:78385415-78385434 | MS.gene41427:CDS | 45.0% | |
| TGGGTGTGGTTGTTGAGAAT+TGG | + | chr1.4:78384997-78385016 | None:intergenic | 45.0% | |
| TTGACGTCGCATATTAGGAC+AGG | - | chr1.4:78387683-78387702 | MS.gene41427:intron | 45.0% | |
| ! | ACAAAGGCACAGGGATGAAA+AGG | - | chr1.4:78387348-78387367 | MS.gene41427:intron | 45.0% |
| ! | ATCGTCATTGGTCTCCATCA+AGG | - | chr1.4:78386874-78386893 | MS.gene41427:CDS | 45.0% |
| ! | GATTGTTTCTCTGAAGAGGC+AGG | - | chr1.4:78386133-78386152 | MS.gene41427:CDS | 45.0% |
| ! | GTCAAATACAGGCTGGTCAA+TGG | - | chr1.4:78385992-78386011 | MS.gene41427:CDS | 45.0% |
| ! | GTTGGTTTCCCAACATCATC+TGG | + | chr1.4:78384574-78384593 | None:intergenic | 45.0% |
| ! | TCAATGGGTTCAGCATCAGA+TGG | - | chr1.4:78386008-78386027 | MS.gene41427:CDS | 45.0% |
| ! | TGAAGATGCACAAAGGCACA+GGG | - | chr1.4:78387339-78387358 | MS.gene41427:intron | 45.0% |
| ! | TTGAAGATGCACAAAGGCAC+AGG | - | chr1.4:78387338-78387357 | MS.gene41427:intron | 45.0% |
| !! | CTTTGGTGCCAGATGATGTT+GGG | - | chr1.4:78384563-78384582 | MS.gene41427:intron | 45.0% |
| !! | TCTTTGGTGCCAGATGATGT+TGG | - | chr1.4:78384562-78384581 | MS.gene41427:intron | 45.0% |
| AAGTGGCGGTCCTAAAGGAA+AGG | - | chr1.4:78388403-78388422 | MS.gene41427:intron | 50.0% | |
| AGCAGCCTCATTGTCTCTTG+AGG | + | chr1.4:78387575-78387594 | None:intergenic | 50.0% | |
| CAGAACTCAATGCCACCAAG+AGG | - | chr1.4:78385927-78385946 | MS.gene41427:CDS | 50.0% | |
| CAGGGACTCTTCTGCTTGAA+TGG | + | chr1.4:78387011-78387030 | None:intergenic | 50.0% | |
| GAATGAAGTGGCGGTCCTAA+AGG | - | chr1.4:78388398-78388417 | MS.gene41427:intron | 50.0% | |
| GCATCAAATGGCATCAGTCC+TGG | - | chr1.4:78385870-78385889 | MS.gene41427:CDS | 50.0% | |
| GGAGAGGAATAATGTGGGTG+TGG | + | chr1.4:78385011-78385030 | None:intergenic | 50.0% | |
| GTTACAAGCACTTCGGAAGC+AGG | - | chr1.4:78386175-78386194 | MS.gene41427:CDS | 50.0% | |
| TATCGCATCTGAGCAGCTTC+AGG | - | chr1.4:78387054-78387073 | MS.gene41427:intron | 50.0% | |
| TTACAGGAGCCTTCAGGCAA+TGG | - | chr1.4:78386083-78386102 | MS.gene41427:CDS | 50.0% | |
| TTGGCCTCAACTGTTCCTCT+TGG | + | chr1.4:78385945-78385964 | None:intergenic | 50.0% | |
| ! | TGGGGAAGATAATGGTGCTG+TGG | - | chr1.4:78385539-78385558 | MS.gene41427:CDS | 50.0% |
| CAGTCCTGGGGTAGCTTCAT+GGG | - | chr1.4:78385884-78385903 | MS.gene41427:CDS | 55.0% | |
| GCCACCAAGAGGAACAGTTG+AGG | - | chr1.4:78385938-78385957 | MS.gene41427:CDS | 55.0% | |
| GCCTCAACTGTTCCTCTTGG+TGG | + | chr1.4:78385942-78385961 | None:intergenic | 55.0% | |
| GCGGAACCACAACAGGCTTA+TGG | - | chr1.4:78387168-78387187 | MS.gene41427:intron | 55.0% | |
| GGAATGGATGCAGCAAGCAC+TGG | - | chr1.4:78388149-78388168 | MS.gene41427:CDS | 55.0% | |
| GTGGCATTGCCATTGCCTGA+AGG | + | chr1.4:78386095-78386114 | None:intergenic | 55.0% | |
| TCAGTCCTGGGGTAGCTTCA+TGG | - | chr1.4:78385883-78385902 | MS.gene41427:CDS | 55.0% | |
| TCATCCCATGAAGCTACCCC+AGG | + | chr1.4:78385891-78385910 | None:intergenic | 55.0% | |
| CGCATCTGAGCAGCTTCAGG+AGG | - | chr1.4:78387057-78387076 | MS.gene41427:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 78384248 | 78388563 | 78384248 | ID=MS.gene41427 |
| chr1.4 | mRNA | 78384248 | 78388563 | 78384248 | ID=MS.gene41427.t1;Parent=MS.gene41427 |
| chr1.4 | exon | 78388495 | 78388563 | 78388495 | ID=MS.gene41427.t1.exon1;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78388495 | 78388563 | 78388495 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78388082 | 78388282 | 78388082 | ID=MS.gene41427.t1.exon2;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78388082 | 78388282 | 78388082 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78387864 | 78387986 | 78387864 | ID=MS.gene41427.t1.exon3;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78387864 | 78387986 | 78387864 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78387375 | 78387412 | 78387375 | ID=MS.gene41427.t1.exon4;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78387375 | 78387412 | 78387375 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78387176 | 78387275 | 78387176 | ID=MS.gene41427.t1.exon5;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78387176 | 78387275 | 78387176 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78385178 | 78386971 | 78385178 | ID=MS.gene41427.t1.exon6;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78385178 | 78386971 | 78385178 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78384619 | 78384662 | 78384619 | ID=MS.gene41427.t1.exon7;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78384619 | 78384662 | 78384619 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| chr1.4 | exon | 78384248 | 78384443 | 78384248 | ID=MS.gene41427.t1.exon8;Parent=MS.gene41427.t1 |
| chr1.4 | CDS | 78384248 | 78384443 | 78384248 | ID=cds.MS.gene41427.t1;Parent=MS.gene41427.t1 |
| Gene Sequence |
| Protein sequence |
