Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49082.t1 | XP_013469675.1 | 92.3 | 854 | 65 | 1 | 1 | 854 | 1 | 853 | 7.50E-303 | 1049.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49082.t1 | A0A072VQJ7 | 92.3 | 854 | 65 | 1 | 1 | 854 | 1 | 853 | 5.4e-303 | 1049.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene49082 | 0.819736 | 9.93E-53 | -1.69E-46 |
| MS.gene049585 | MS.gene49082 | 0.814523 | 1.48E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene49082 | 0.823004 | 1.75E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene49082 | 0.825633 | 4.22E-54 | -1.69E-46 |
| MS.gene051102 | MS.gene49082 | 0.820983 | 5.14E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene49082 | 0.817437 | 3.30E-52 | -1.69E-46 |
| MS.gene051800 | MS.gene49082 | 0.803461 | 3.45E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene49082 | 0.804202 | 2.42E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene49082 | 0.831588 | 1.53E-55 | -1.69E-46 |
| MS.gene052335 | MS.gene49082 | 0.817022 | 4.09E-52 | -1.69E-46 |
| MS.gene052342 | MS.gene49082 | 0.80293 | 4.44E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene49082 | 0.810385 | 1.18E-50 | -1.69E-46 |
| MS.gene052514 | MS.gene49082 | 0.834344 | 3.16E-56 | -1.69E-46 |
| MS.gene052516 | MS.gene49082 | 0.818715 | 1.70E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene49082 | 0.853416 | 2.43E-61 | -1.69E-46 |
| MS.gene053079 | MS.gene49082 | 0.826792 | 2.23E-54 | -1.69E-46 |
| MS.gene053143 | MS.gene49082 | 0.834697 | 2.58E-56 | -1.69E-46 |
| MS.gene053144 | MS.gene49082 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene054178 | MS.gene49082 | 0.802386 | 5.75E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene49082 | 0.820714 | 5.93E-53 | -1.69E-46 |
| MS.gene054824 | MS.gene49082 | 0.849837 | 2.50E-60 | -1.69E-46 |
| MS.gene055144 | MS.gene49082 | 0.803543 | 3.32E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene49082 | 0.828422 | 9.07E-55 | -1.69E-46 |
| MS.gene055513 | MS.gene49082 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene49082 | 0.804216 | 2.40E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene49082 | 0.836822 | 7.47E-57 | -1.69E-46 |
| MS.gene056390 | MS.gene49082 | 0.817784 | 2.75E-52 | -1.69E-46 |
| MS.gene056507 | MS.gene49082 | 0.847405 | 1.18E-59 | -1.69E-46 |
| MS.gene058330 | MS.gene49082 | 0.808629 | 2.82E-50 | -1.69E-46 |
| MS.gene058639 | MS.gene49082 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene058649 | MS.gene49082 | 0.824519 | 7.73E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene49082 | 0.808458 | 3.07E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene49082 | 0.831702 | 1.44E-55 | -1.69E-46 |
| MS.gene059439 | MS.gene49082 | 0.800192 | 1.62E-48 | -1.69E-46 |
| MS.gene060932 | MS.gene49082 | 0.814968 | 1.18E-51 | -1.69E-46 |
| MS.gene061006 | MS.gene49082 | 0.8254 | 4.79E-54 | -1.69E-46 |
| MS.gene061100 | MS.gene49082 | 0.834535 | 2.83E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49082 | MS.gene72170 | PPI |
| MS.gene49082 | MS.gene072801 | PPI |
| MS.gene49082 | MS.gene030426 | PPI |
| MS.gene050376 | MS.gene49082 | PPI |
| MS.gene49082 | MS.gene070339 | PPI |
| MS.gene019289 | MS.gene49082 | PPI |
| MS.gene015570 | MS.gene49082 | PPI |
| MS.gene49082 | MS.gene048780 | PPI |
| MS.gene49082 | MS.gene035588 | PPI |
| MS.gene49082 | MS.gene57758 | PPI |
| MS.gene012563 | MS.gene49082 | PPI |
| MS.gene048777 | MS.gene49082 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49082.t1 | MTR_1g100633 | 97.658 | 854 | 19 | 1 | 1 | 854 | 1 | 853 | 0.0 | 1687 |
| MS.gene49082.t1 | MTR_1g100633 | 97.465 | 789 | 19 | 1 | 1 | 789 | 1 | 788 | 0.0 | 1562 |
| MS.gene49082.t1 | MTR_1g100633 | 97.677 | 775 | 17 | 1 | 1 | 775 | 1 | 774 | 0.0 | 1537 |
| MS.gene49082.t1 | MTR_8g097350 | 38.070 | 767 | 394 | 12 | 1 | 698 | 1 | 755 | 9.02e-142 | 446 |
| MS.gene49082.t1 | MTR_8g097350 | 34.555 | 191 | 88 | 4 | 695 | 853 | 846 | 1031 | 1.73e-17 | 88.2 |
| MS.gene49082.t1 | MTR_8g097350 | 37.792 | 770 | 395 | 11 | 1 | 698 | 1 | 758 | 2.34e-141 | 444 |
| MS.gene49082.t1 | MTR_5g010520 | 36.763 | 797 | 426 | 15 | 1 | 727 | 1 | 789 | 3.15e-139 | 437 |
| MS.gene49082.t1 | MTR_5g010520 | 36.763 | 797 | 426 | 15 | 1 | 727 | 1 | 789 | 5.48e-138 | 437 |
| MS.gene49082.t1 | MTR_5g010520 | 72.727 | 55 | 15 | 0 | 799 | 853 | 1007 | 1061 | 5.12e-15 | 80.1 |
| MS.gene49082.t1 | MTR_0415s0010 | 41.702 | 235 | 119 | 6 | 191 | 419 | 51 | 273 | 1.08e-37 | 143 |
| MS.gene49082.t1 | MTR_3g073620 | 28.678 | 401 | 215 | 10 | 5 | 342 | 7 | 399 | 1.25e-37 | 153 |
| MS.gene49082.t1 | MTR_0415s0020 | 40.476 | 210 | 125 | 0 | 489 | 698 | 18 | 227 | 4.23e-35 | 137 |
| MS.gene49082.t1 | MTR_1g062200 | 26.596 | 470 | 256 | 12 | 1 | 413 | 1 | 438 | 2.43e-24 | 110 |
| MS.gene49082.t1 | MTR_1g062200 | 26.596 | 470 | 256 | 12 | 1 | 413 | 1 | 438 | 2.58e-24 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49082.t1 | AT5G52280 | 45.311 | 885 | 419 | 23 | 1 | 853 | 1 | 852 | 0.0 | 603 |
| MS.gene49082.t1 | AT5G41140 | 36.784 | 995 | 474 | 26 | 1 | 853 | 1 | 982 | 2.98e-155 | 480 |
| MS.gene49082.t1 | AT5G41140 | 37.071 | 990 | 471 | 27 | 1 | 853 | 1 | 975 | 6.01e-155 | 479 |
| MS.gene49082.t1 | AT1G63300 | 38.747 | 782 | 424 | 16 | 1 | 732 | 1 | 777 | 3.08e-136 | 431 |
| MS.gene49082.t1 | AT1G22060 | 25.893 | 672 | 422 | 14 | 5 | 616 | 7 | 662 | 6.05e-41 | 164 |
| MS.gene49082.t1 | AT1G22060 | 25.893 | 672 | 422 | 14 | 5 | 616 | 7 | 662 | 6.05e-41 | 164 |
Find 135 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTCTTGATTGCATTTC+TGG | 0.028652 | 1.3:+69457748 | None:intergenic |
| TTCAAGATGGGACTTGTTTA+TGG | 0.179533 | 1.3:-69460392 | MS.gene49082:CDS |
| GCCCTTGAAATTTGCAAATT+CGG | 0.204924 | 1.3:-69460099 | MS.gene49082:CDS |
| CTCAAATTCTGAGCTTCTTT+TGG | 0.211938 | 1.3:-69458486 | MS.gene49082:CDS |
| TGAAAATCAAGTTAAGTCTT+TGG | 0.245483 | 1.3:-69458048 | MS.gene49082:CDS |
| TATTTGTGTTCCTTTCCTTT+AGG | 0.250385 | 1.3:+69456408 | None:intergenic |
| CCCTTGAAATTTGCAAATTC+GGG | 0.262697 | 1.3:-69460098 | MS.gene49082:CDS |
| TTGAATCTGTTAAACTTGTT+AGG | 0.276431 | 1.3:-69460356 | MS.gene49082:CDS |
| CAGGGACTCTTCTGCTTGAA+TGG | 0.294165 | 1.3:+69457941 | None:intergenic |
| GATCAAAGCTGTATTCAAAT+TGG | 0.298730 | 1.3:-69460847 | MS.gene49082:CDS |
| AATTCTCTATTTCACTATTC+TGG | 0.302012 | 1.3:+69458324 | None:intergenic |
| GAGTTCTGTCTGAAGCTATA+AGG | 0.304087 | 1.3:+69459037 | None:intergenic |
| ACAAAAGAATAAGGAAATAT+TGG | 0.304705 | 1.3:-69458435 | MS.gene49082:CDS |
| CTTGTTAGGGATTCAAAATC+AGG | 0.313625 | 1.3:-69460342 | MS.gene49082:CDS |
| AAAGGAAAGGAACACAAATA+TGG | 0.317151 | 1.3:-69456405 | MS.gene49082:CDS |
| TTGTAGGGTTCTTCAAAATC+TGG | 0.322934 | 1.3:-69460191 | MS.gene49082:intron |
| TATTGTGTCTCGTCTTTCTC+AGG | 0.325981 | 1.3:+69457922 | None:intergenic |
| GAATGCATTGATGGTATCTT+TGG | 0.340165 | 1.3:-69460463 | MS.gene49082:CDS |
| CTGTACTGCCGTAGCTCAAT+TGG | 0.340468 | 1.3:+69459358 | None:intergenic |
| AAGGGCAGAGAAACAGTAAT+TGG | 0.340819 | 1.3:+69460116 | None:intergenic |
| AATGCTAGAACAAAAGAATA+AGG | 0.342812 | 1.3:-69458444 | MS.gene49082:CDS |
| TTCTTCAAAATCTGGCTACT+TGG | 0.349811 | 1.3:-69460183 | MS.gene49082:CDS |
| TCAGTCCTGGGGTAGCTTCA+TGG | 0.364313 | 1.3:-69459066 | MS.gene49082:CDS |
| TTTGTTCTAGCATTGCTTCA+AGG | 0.366988 | 1.3:+69458453 | None:intergenic |
| CATTCAATAATTCCTTTGTA+AGG | 0.376479 | 1.3:+69456441 | None:intergenic |
| CGCAAAATCAAGTGCATAAG+AGG | 0.380680 | 1.3:-69458979 | MS.gene49082:CDS |
| TCAAGATGGGACTTGTTTAT+GGG | 0.381612 | 1.3:-69460391 | MS.gene49082:CDS |
| GCCTCAACTGTTCCTCTTGG+TGG | 0.382303 | 1.3:+69459010 | None:intergenic |
| TATCGCATCTGAGCAGCTTC+AGG | 0.385097 | 1.3:-69457895 | MS.gene49082:CDS |
| GCTTCAGTTAGATGCAATAA+AGG | 0.391713 | 1.3:-69458573 | MS.gene49082:CDS |
| GCGGAACCACAACAGGCTTA+TGG | 0.395493 | 1.3:-69457781 | MS.gene49082:CDS |
| TGAATCTGTTAAACTTGTTA+GGG | 0.399721 | 1.3:-69460355 | MS.gene49082:CDS |
| GGAAACTGAACTGAAAGAAA+TGG | 0.401729 | 1.3:-69456384 | MS.gene49082:CDS |
| AGCACTGCTATTAGCAAGTC+TGG | 0.408207 | 1.3:-69456657 | MS.gene49082:CDS |
| TATTGGATCTATCTTCCAAT+AGG | 0.408356 | 1.3:-69458418 | MS.gene49082:CDS |
| AGAAGAAAAGATAGAGATGC+AGG | 0.410311 | 1.3:-69458111 | MS.gene49082:CDS |
| AAACATATATCTCAATTAGA+AGG | 0.412778 | 1.3:-69457480 | MS.gene49082:CDS |
| GCATCTAATGGCATCAGTCC+TGG | 0.413343 | 1.3:-69459079 | MS.gene49082:CDS |
| GCCCGAATTTGCAAATTTCA+AGG | 0.415467 | 1.3:+69460097 | None:intergenic |
| TGTGTTTCATTTCATTGTGC+TGG | 0.418901 | 1.3:+69457541 | None:intergenic |
| TGCAGAAATGAGGAAGATAA+TGG | 0.426334 | 1.3:-69459417 | MS.gene49082:intron |
| ATTATTATTGAAGTTCTGTT+GGG | 0.435565 | 1.3:+69458652 | None:intergenic |
| TTACAGTTGCAACAATGAAA+TGG | 0.436006 | 1.3:+69460298 | None:intergenic |
| AGTTCTGTCTGAAGCTATAA+GGG | 0.436569 | 1.3:+69459038 | None:intergenic |
| ATGAATTGCGGAACCACAAC+AGG | 0.437283 | 1.3:-69457788 | MS.gene49082:CDS |
| GAAAGATTACAAGAGCCTTC+AGG | 0.441231 | 1.3:-69458872 | MS.gene49082:CDS |
| GTCAAATACAGGCTGGTCAA+TGG | 0.441874 | 1.3:-69458957 | MS.gene49082:CDS |
| CAGTCCTGGGGTAGCTTCAT+GGG | 0.444592 | 1.3:-69459065 | MS.gene49082:CDS |
| GTTGGTTTCCCAACATCATC+TGG | 0.444751 | 1.3:+69460438 | None:intergenic |
| TTTCTTCTAATCTCTTCACT+TGG | 0.444944 | 1.3:+69458126 | None:intergenic |
| TTGGCCTCAACTGTTCCTCT+TGG | 0.447378 | 1.3:+69459007 | None:intergenic |
| TATTATTATTGAAGTTCTGT+TGG | 0.451599 | 1.3:+69458651 | None:intergenic |
| ATCGTCATTGGTCTCCATCA+AGG | 0.466927 | 1.3:-69458075 | MS.gene49082:CDS |
| GGAGAAAGAACTGAGAATAC+AGG | 0.469997 | 1.3:-69458027 | MS.gene49082:CDS |
| TTCTTCTAATCTCTTCACTT+GGG | 0.471446 | 1.3:+69458127 | None:intergenic |
| ACAAAGGCACAGGGATGAAA+AGG | 0.473365 | 1.3:-69457601 | MS.gene49082:CDS |
| GCTGTACGTAATCTCAAGAA+TGG | 0.473934 | 1.3:-69456293 | MS.gene49082:CDS |
| AGTTTAGGCGATTGGACAAA+CGG | 0.474029 | 1.3:-69458917 | MS.gene49082:CDS |
| CAGATGGAAGTTTAGGCGAT+TGG | 0.475262 | 1.3:-69458925 | MS.gene49082:CDS |
| TCAGCATCAGATGGAAGTTT+AGG | 0.477365 | 1.3:-69458932 | MS.gene49082:CDS |
| AGAAGCAGAATTAAATGCTA+TGG | 0.479810 | 1.3:-69457442 | MS.gene49082:CDS |
| AGTAGATCTGATGCATCTAA+TGG | 0.480305 | 1.3:-69459091 | MS.gene49082:CDS |
| TCAAATACAGGCTGGTCAAT+GGG | 0.480928 | 1.3:-69458956 | MS.gene49082:CDS |
| CATCTAATGGCATCAGTCCT+GGG | 0.480966 | 1.3:-69459078 | MS.gene49082:CDS |
| GTTGCAAGCACTTCGGAAGC+AGG | 0.481136 | 1.3:-69458774 | MS.gene49082:CDS |
| GAATGAAGTGGCAGTCCTAA+AGG | 0.485055 | 1.3:-69456423 | MS.gene49082:CDS |
| TCTGAAATTTGCAGAGGTAG+AGG | 0.487867 | 1.3:-69456339 | MS.gene49082:CDS |
| ATACCTTATTTGCAGAAATG+AGG | 0.492543 | 1.3:-69459427 | MS.gene49082:intron |
| GGCTCTTGTAATCTTTCTCT+CGG | 0.497390 | 1.3:+69458878 | None:intergenic |
| GAGAAAACTGCTGTTCAAGA+TGG | 0.500999 | 1.3:-69460405 | MS.gene49082:CDS |
| TCTTCAAAATCTGGCTACTT+GGG | 0.505506 | 1.3:-69460182 | MS.gene49082:CDS |
| GTGAAATTGCTTCTCTGAAG+AGG | 0.507177 | 1.3:-69458820 | MS.gene49082:CDS |
| AAAATCAGCAAAATCAATTG+AGG | 0.508143 | 1.3:+69460154 | None:intergenic |
| AAGAGACAATGAGGCTGCTA+AGG | 0.508811 | 1.3:-69457373 | MS.gene49082:CDS |
| AGCAGCCTCATTGTCTCTTG+AGG | 0.509235 | 1.3:+69457377 | None:intergenic |
| TTGAGGAAGCACAAAGGCAC+AGG | 0.510046 | 1.3:-69457611 | MS.gene49082:CDS |
| ATTGTGTCTCGTCTTTCTCA+GGG | 0.510679 | 1.3:+69457923 | None:intergenic |
| CTTTGGTGCCAGATGATGTT+GGG | 0.511310 | 1.3:-69460446 | MS.gene49082:CDS |
| GTCTAGATCAGAAATGCATA+AGG | 0.518593 | 1.3:-69457337 | MS.gene49082:intron |
| TTTCTTCCATAAGCCTGTTG+TGG | 0.519288 | 1.3:+69457775 | None:intergenic |
| AGATCAACATGAATTGAAAG+TGG | 0.519867 | 1.3:-69457715 | MS.gene49082:CDS |
| CCCGAATTTGCAAATTTCAA+GGG | 0.521489 | 1.3:+69460098 | None:intergenic |
| CTGAAATTTGCAGAGGTAGA+GGG | 0.524057 | 1.3:-69456338 | MS.gene49082:CDS |
| AGAAAGACAACAGCTTGTTA+TGG | 0.526698 | 1.3:-69456315 | MS.gene49082:CDS |
| TAGATTTGAAGATGAACTCC+AGG | 0.530412 | 1.3:-69458000 | MS.gene49082:CDS |
| GTCTCGATAAATTCTGTCCC+CGG | 0.532509 | 1.3:+69458735 | None:intergenic |
| AAAGGAATTATTGAATGAAG+TGG | 0.532662 | 1.3:-69456435 | MS.gene49082:CDS |
| AGAAATGCAATCAAGAGCTC+AGG | 0.533105 | 1.3:-69457746 | MS.gene49082:CDS |
| AGTCTGATATTGATAATACT+AGG | 0.533275 | 1.3:-69458595 | MS.gene49082:CDS |
| AGATGCATCAGATCTACTCT+TGG | 0.537649 | 1.3:+69459096 | None:intergenic |
| TTACAAGAGCCTTCAGGCAA+TGG | 0.539542 | 1.3:-69458866 | MS.gene49082:CDS |
| CTGAAAACATGTTCAAGTCA+TGG | 0.540034 | 1.3:-69460884 | None:intergenic |
| ATTGGAATTTCAAGCAACTC+AGG | 0.543027 | 1.3:-69460829 | MS.gene49082:intron |
| AGAAAACTGCTGTTCAAGAT+GGG | 0.543774 | 1.3:-69460404 | MS.gene49082:CDS |
| GCTGTGGGACTTTATAATGA+TGG | 0.544574 | 1.3:-69459393 | MS.gene49082:CDS |
| GAGGAAGATAATGGAGCTGT+GGG | 0.564371 | 1.3:-69459408 | MS.gene49082:CDS |
| AATTGCTTCTCTGAAGAGGC+AGG | 0.565269 | 1.3:-69458816 | MS.gene49082:CDS |
| GTGCATAAGAGGTCAAATAC+AGG | 0.566002 | 1.3:-69458968 | MS.gene49082:CDS |
| TGAGGAAGATAATGGAGCTG+TGG | 0.574840 | 1.3:-69459409 | MS.gene49082:CDS |
| TCATCCCATGAAGCTACCCC+AGG | 0.575983 | 1.3:+69459061 | None:intergenic |
| CAGTTTGCAGAAAGAACAAG+TGG | 0.577325 | 1.3:-69457520 | MS.gene49082:CDS |
| TATCTTATAGAATAGCAACT+TGG | 0.578135 | 1.3:-69459119 | MS.gene49082:intron |
| CTCAAGAATAACAAAGGACG+AGG | 0.579104 | 1.3:-69457411 | MS.gene49082:CDS |
| GAAGAGGCAGGCAGAACTGT+CGG | 0.581719 | 1.3:-69458804 | MS.gene49082:CDS |
| GTAGCGTTGCCATTGCCTGA+AGG | 0.582727 | 1.3:+69458857 | None:intergenic |
| TCTTTGGTGCCAGATGATGT+TGG | 0.584848 | 1.3:-69460447 | MS.gene49082:CDS |
| AACTAGAGTTGCAAGCACTT+CGG | 0.593239 | 1.3:-69458781 | MS.gene49082:CDS |
| TATATCTCAATTAGAAGGAG+AGG | 0.593443 | 1.3:-69457475 | MS.gene49082:CDS |
| ACAGGTAACTATTCAGAATG+TGG | 0.594916 | 1.3:-69459551 | MS.gene49082:intron |
| CGCATCTGAGCAGCTTCAGG+AGG | 0.596198 | 1.3:-69457892 | MS.gene49082:CDS |
| GTAACTATTCAGAATGTGGA+AGG | 0.605000 | 1.3:-69459547 | MS.gene49082:CDS |
| AAGTGGCAGTCCTAAAGGAA+AGG | 0.605693 | 1.3:-69456418 | MS.gene49082:CDS |
| TCGAAGAAGCTGATGAATTG+CGG | 0.607639 | 1.3:-69457800 | MS.gene49082:CDS |
| CATGTTACAGAATGAACACT+CGG | 0.608847 | 1.3:-69458180 | MS.gene49082:CDS |
| TCTTCTTAAGAATGAAAATG+TGG | 0.611817 | 1.3:-69458243 | MS.gene49082:CDS |
| GATTAGTCTGAAATTTGCAG+AGG | 0.613349 | 1.3:-69456345 | MS.gene49082:CDS |
| TCAATGGGTTCAGCATCAGA+TGG | 0.615920 | 1.3:-69458941 | MS.gene49082:CDS |
| AAGAAGCTCAAGAATAACAA+AGG | 0.616117 | 1.3:-69457417 | MS.gene49082:CDS |
| TTGAAACACCAATTGAGCTA+CGG | 0.626246 | 1.3:-69459366 | MS.gene49082:CDS |
| ATAAGAGGTCAAATACAGGC+TGG | 0.635907 | 1.3:-69458964 | MS.gene49082:CDS |
| AGGCGATTGGACAAACGGCA+CGG | 0.637412 | 1.3:-69458912 | MS.gene49082:CDS |
| TGATGCTGAACGCCTTACAA+AGG | 0.649461 | 1.3:-69456453 | MS.gene49082:CDS |
| CTATTAGCAAGTCTGGAGGA+AGG | 0.651577 | 1.3:-69456650 | MS.gene49082:intron |
| ATCTAATGGCATCAGTCCTG+GGG | 0.653520 | 1.3:-69459077 | MS.gene49082:CDS |
| TGAGGAAGCACAAAGGCACA+GGG | 0.658556 | 1.3:-69457610 | MS.gene49082:CDS |
| TGGAAGGATATACTGCTGAA+AGG | 0.665950 | 1.3:-69459531 | MS.gene49082:intron |
| CAGAACTCAATGCCACCAAG+AGG | 0.670351 | 1.3:-69459022 | MS.gene49082:CDS |
| GCCACCAAGAGGAACAGTTG+AGG | 0.674754 | 1.3:-69459011 | MS.gene49082:CDS |
| TATGACCTCAAGAGACAATG+AGG | 0.676328 | 1.3:-69457382 | MS.gene49082:CDS |
| ACTGCTATTAGCAAGTCTGG+AGG | 0.691953 | 1.3:-69456654 | MS.gene49082:CDS |
| AAAATGTGGATATCTCTCTG+AGG | 0.723116 | 1.3:-69458229 | MS.gene49082:CDS |
| AAGAACTTGAGGAAGCACAA+AGG | 0.724381 | 1.3:-69457617 | MS.gene49082:CDS |
| AATTTATCGAGACAGATCAA+CGG | 0.731582 | 1.3:-69458725 | MS.gene49082:CDS |
| GAATTGTTATAAGCAACGCG+AGG | 0.741429 | 1.3:-69458306 | MS.gene49082:CDS |
| GCTTATAAAAGAGCTCACAG+TGG | 0.747992 | 1.3:-69458273 | MS.gene49082:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | - | chr1.3:69459917-69459936 | MS.gene49082:intron | 10.0% |
| !! | AATGTAAAATTATTTATGTT+TGG | - | chr1.3:69457305-69457324 | MS.gene49082:intron | 10.0% |
| !! | ATAAACAAAACATATTATTA+TGG | + | chr1.3:69460447-69460466 | None:intergenic | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | - | chr1.3:69459916-69459935 | MS.gene49082:intron | 10.0% |
| !!! | GTAAATATGATTTTATAAAA+TGG | + | chr1.3:69458002-69458021 | None:intergenic | 10.0% |
| !!! | TTATTTTTGTAACATTAAAA+GGG | - | chr1.3:69460463-69460482 | MS.gene49082:CDS | 10.0% |
| !!! | TTTATTTTTGTAACATTAAA+AGG | - | chr1.3:69460462-69460481 | MS.gene49082:CDS | 10.0% |
| !! | AAAATTGTGTCAATTAAATT+GGG | + | chr1.3:69459881-69459900 | None:intergenic | 15.0% |
| !!! | AAACTAACTTGTATTATTTT+TGG | - | chr1.3:69460663-69460682 | MS.gene49082:intron | 15.0% |
| !!! | AAATAATACAAGTTAGTTTT+TGG | + | chr1.3:69460662-69460681 | None:intergenic | 15.0% |
| !!! | CAAAATCAATTTTATATTTC+TGG | - | chr1.3:69457421-69457440 | MS.gene49082:CDS | 15.0% |
| !!! | CAATATCATTTTTTTTATAC+TGG | - | chr1.3:69460236-69460255 | MS.gene49082:intron | 15.0% |
| !!! | GAAAGTTTAAATCTTTTTAA+TGG | - | chr1.3:69456938-69456957 | MS.gene49082:intron | 15.0% |
| !!! | TTTTTCATTATACAACAATT+AGG | + | chr1.3:69456511-69456530 | None:intergenic | 15.0% |
| !! | AAAAGTGGAATATATTGTAT+TGG | - | chr1.3:69459940-69459959 | MS.gene49082:intron | 20.0% |
| !! | AAACATATATCTCAATTAGA+AGG | - | chr1.3:69459676-69459695 | MS.gene49082:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | - | chr1.3:69459941-69459960 | MS.gene49082:intron | 20.0% |
| !! | AAGTACAAAAGAAAAAACAA+TGG | - | chr1.3:69459483-69459502 | MS.gene49082:intron | 20.0% |
| !! | ACAAAAGAATAAGGAAATAT+TGG | - | chr1.3:69458721-69458740 | MS.gene49082:CDS | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | - | chr1.3:69459973-69459992 | MS.gene49082:intron | 20.0% |
| !! | AGTTTAACAGATTCAAAAAT+TGG | + | chr1.3:69456796-69456815 | None:intergenic | 20.0% |
| !! | ATTATTATTGAAGTTCTGTT+GGG | + | chr1.3:69458507-69458526 | None:intergenic | 20.0% |
| !! | CAAAATTGTGTCAATTAAAT+TGG | + | chr1.3:69459882-69459901 | None:intergenic | 20.0% |
| !! | GTTGTATTGAAAATTGAAAT+GGG | - | chr1.3:69459974-69459993 | MS.gene49082:intron | 20.0% |
| !! | TATTATTATTGAAGTTCTGT+TGG | + | chr1.3:69458508-69458527 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTGACATGTT+TGG | + | chr1.3:69457414-69457433 | None:intergenic | 20.0% |
| !!! | ATTGTTATTTACTTAACAGA+AGG | - | chr1.3:69456903-69456922 | MS.gene49082:intron | 20.0% |
| !!! | GAAAAGTGTATATATCATTT+TGG | + | chr1.3:69460207-69460226 | None:intergenic | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr1.3:69460010-69460029 | MS.gene49082:intron | 20.0% |
| !!! | TTTTTAATCTGCTTTTGATT+AGG | - | chr1.3:69456654-69456673 | MS.gene49082:CDS | 20.0% |
| ! | AAAAAAATCATATATTGCCC+TGG | + | chr1.3:69457975-69457994 | None:intergenic | 25.0% |
| ! | AAAATCAGCAAAATCAATTG+AGG | + | chr1.3:69457005-69457024 | None:intergenic | 25.0% |
| ! | AAAGGAATTATTGAATGAAG+TGG | - | chr1.3:69460721-69460740 | MS.gene49082:intron | 25.0% |
| ! | AAGTTTATATCCTTCAAAAC+TGG | - | chr1.3:69457448-69457467 | MS.gene49082:CDS | 25.0% |
| ! | AATGCTAGAACAAAAGAATA+AGG | - | chr1.3:69458712-69458731 | MS.gene49082:CDS | 25.0% |
| ! | AATTCTCTATTTCACTATTC+TGG | + | chr1.3:69458835-69458854 | None:intergenic | 25.0% |
| ! | AGATTAGTAGATGAATAATG+TGG | + | chr1.3:69457161-69457180 | None:intergenic | 25.0% |
| ! | AGTTATTACTCACAGTAAAA+AGG | - | chr1.3:69460143-69460162 | MS.gene49082:CDS | 25.0% |
| ! | ATACTATCAAATCTGACAAT+GGG | - | chr1.3:69456479-69456498 | MS.gene49082:intron | 25.0% |
| ! | ATAGCTAGCAATTCTATTAA+GGG | - | chr1.3:69457866-69457885 | MS.gene49082:CDS | 25.0% |
| ! | CATCCATATAACAAAACATT+TGG | - | chr1.3:69460597-69460616 | MS.gene49082:intron | 25.0% |
| ! | CATTCAATAATTCCTTTGTA+AGG | + | chr1.3:69460718-69460737 | None:intergenic | 25.0% |
| ! | GAACATACTTATCACATATT+AGG | - | chr1.3:69460070-69460089 | MS.gene49082:intron | 25.0% |
| ! | GATTAGTAGATGAATAATGT+GGG | + | chr1.3:69457160-69457179 | None:intergenic | 25.0% |
| ! | GTTTATGAAAAAGAAATGAG+TGG | - | chr1.3:69458614-69458633 | MS.gene49082:CDS | 25.0% |
| ! | TATACTATCAAATCTGACAA+TGG | - | chr1.3:69456478-69456497 | MS.gene49082:intron | 25.0% |
| ! | TATAGCTAGCAATTCTATTA+AGG | - | chr1.3:69457865-69457884 | MS.gene49082:CDS | 25.0% |
| ! | TATCTTATAGAATAGCAACT+TGG | - | chr1.3:69458037-69458056 | MS.gene49082:CDS | 25.0% |
| ! | TCAAATAAATCAATCCAAAC+AGG | + | chr1.3:69457892-69457911 | None:intergenic | 25.0% |
| ! | TCTTCTTAAGAATGAAAATG+TGG | - | chr1.3:69458913-69458932 | MS.gene49082:CDS | 25.0% |
| ! | TGAAAATACTCCATATAACA+AGG | - | chr1.3:69460314-69460333 | MS.gene49082:CDS | 25.0% |
| ! | TGAAAATCAAGTTAAGTCTT+TGG | - | chr1.3:69459108-69459127 | MS.gene49082:CDS | 25.0% |
| ! | TGTATAAATAAAGGGAAAAG+TGG | - | chr1.3:69459925-69459944 | MS.gene49082:intron | 25.0% |
| ! | TGTTTAAAAACATGTTTCCT+AGG | - | chr1.3:69456535-69456554 | MS.gene49082:intron | 25.0% |
| ! | TTTGTAACATTAAAAGGGAA+TGG | - | chr1.3:69460468-69460487 | MS.gene49082:CDS | 25.0% |
| !! | AGTCTGATATTGATAATACT+AGG | - | chr1.3:69458561-69458580 | MS.gene49082:CDS | 25.0% |
| !! | TTGAATCTGTTAAACTTGTT+AGG | - | chr1.3:69456800-69456819 | MS.gene49082:intron | 25.0% |
| !!! | AATCTTTTGAGATTTCCTAT+TGG | + | chr1.3:69458756-69458775 | None:intergenic | 25.0% |
| !!! | AATGCATTCTTTTTCATCTT+TGG | + | chr1.3:69456682-69456701 | None:intergenic | 25.0% |
| !!! | CAAATGTTTTGTTATATGGA+TGG | + | chr1.3:69460599-69460618 | None:intergenic | 25.0% |
| !!! | CTTTTTAATGGATTCTTGTA+GGG | - | chr1.3:69456950-69456969 | MS.gene49082:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr1.3:69460009-69460028 | MS.gene49082:intron | 25.0% |
| !!! | TCTTTTTAATGGATTCTTGT+AGG | - | chr1.3:69456949-69456968 | MS.gene49082:intron | 25.0% |
| !!! | TGAATCTGTTAAACTTGTTA+GGG | - | chr1.3:69456801-69456820 | MS.gene49082:intron | 25.0% |
| AAAGGAAAGGAACACAAATA+TGG | - | chr1.3:69460751-69460770 | MS.gene49082:intron | 30.0% | |
| AAGAAGCTCAAGAATAACAA+AGG | - | chr1.3:69459739-69459758 | MS.gene49082:intron | 30.0% | |
| AATTTATCGAGACAGATCAA+CGG | - | chr1.3:69458431-69458450 | MS.gene49082:CDS | 30.0% | |
| ACATATTAGGACAGGTTAAA+TGG | - | chr1.3:69460083-69460102 | MS.gene49082:intron | 30.0% | |
| AGAAGCAGAATTAAATGCTA+TGG | - | chr1.3:69459714-69459733 | MS.gene49082:intron | 30.0% | |
| AGATCAACATGAATTGAAAG+TGG | - | chr1.3:69459441-69459460 | MS.gene49082:intron | 30.0% | |
| AGTAATAACCTTAGAATCCA+AGG | - | chr1.3:69460171-69460190 | MS.gene49082:CDS | 30.0% | |
| ATATAAGAGAGAGTTCAGAA+GGG | + | chr1.3:69457697-69457716 | None:intergenic | 30.0% | |
| CACTTAAGAATTGTTGAAAC+AGG | - | chr1.3:69457587-69457606 | MS.gene49082:CDS | 30.0% | |
| GATCAAAGCTGTATTCAAAT+TGG | - | chr1.3:69456309-69456328 | MS.gene49082:CDS | 30.0% | |
| GATGAAAAAGAATGCATTGA+TGG | - | chr1.3:69456684-69456703 | MS.gene49082:intron | 30.0% | |
| GTGTAAATTTCAAACATCCT+AGG | + | chr1.3:69456555-69456574 | None:intergenic | 30.0% | |
| GTTACAATCTTGATGAAGTA+AGG | - | chr1.3:69457827-69457846 | MS.gene49082:CDS | 30.0% | |
| TACTATCAAATCTGACAATG+GGG | - | chr1.3:69456480-69456499 | MS.gene49082:intron | 30.0% | |
| TACTTAACAGAAGGATATGT+TGG | - | chr1.3:69456912-69456931 | MS.gene49082:intron | 30.0% | |
| TACTTATCACATATTAGGAC+AGG | - | chr1.3:69460075-69460094 | MS.gene49082:intron | 30.0% | |
| TATATCTCAATTAGAAGGAG+AGG | - | chr1.3:69459681-69459700 | MS.gene49082:intron | 30.0% | |
| TATTGGATCTATCTTCCAAT+AGG | - | chr1.3:69458738-69458757 | MS.gene49082:CDS | 30.0% | |
| TATTTGTGTTCCTTTCCTTT+AGG | + | chr1.3:69460751-69460770 | None:intergenic | 30.0% | |
| TCATTTCTGCAAATAAGGTA+TGG | + | chr1.3:69457730-69457749 | None:intergenic | 30.0% | |
| TTACAGTTGCAACAATGAAA+TGG | + | chr1.3:69456861-69456880 | None:intergenic | 30.0% | |
| TTCTTCTAATCTCTTCACTT+GGG | + | chr1.3:69459032-69459051 | None:intergenic | 30.0% | |
| TTGTGTCAATTAAATTGGGA+CGG | + | chr1.3:69459877-69459896 | None:intergenic | 30.0% | |
| TTGTTATATGGATGGTAAGA+GGG | + | chr1.3:69460591-69460610 | None:intergenic | 30.0% | |
| TTTCTTCTAATCTCTTCACT+TGG | + | chr1.3:69459033-69459052 | None:intergenic | 30.0% | |
| ! | ACACAGAATTAGATGTTTTG+CGG | - | chr1.3:69458795-69458814 | MS.gene49082:CDS | 30.0% |
| ! | AGATGAATTTTCATCGTCAT+TGG | - | chr1.3:69459069-69459088 | MS.gene49082:CDS | 30.0% |
| ! | ATACCTTATTTGCAGAAATG+AGG | - | chr1.3:69457729-69457748 | MS.gene49082:CDS | 30.0% |
| ! | TTGAAATGGGTCAGTTATTT+TGG | - | chr1.3:69459987-69460006 | MS.gene49082:intron | 30.0% |
| ! | TTTGTTATATGGATGGTAAG+AGG | + | chr1.3:69460592-69460611 | None:intergenic | 30.0% |
| !! | ATCAGACTTCAAGTTTTTAG+AGG | + | chr1.3:69458549-69458568 | None:intergenic | 30.0% |
| !! | CTCTTTCAAGTTTGATACAT+TGG | + | chr1.3:69456408-69456427 | None:intergenic | 30.0% |
| !! | GCACCAAATGTTTTGTTATA+TGG | + | chr1.3:69460603-69460622 | None:intergenic | 30.0% |
| !! | TAAACAGAAACTTGTTACCA+GGG | - | chr1.3:69457955-69457974 | MS.gene49082:CDS | 30.0% |
| !! | TGAAATGGGTCAGTTATTTT+GGG | - | chr1.3:69459988-69460007 | MS.gene49082:intron | 30.0% |
| !!! | TTGATTTTCAAGTTCCTTGA+TGG | + | chr1.3:69459098-69459117 | None:intergenic | 30.0% |
| AAAAAACTGAGCAGGAAGAA+CGG | - | chr1.3:69459191-69459210 | MS.gene49082:intron | 35.0% | |
| AAAATGTGGATATCTCTCTG+AGG | - | chr1.3:69458927-69458946 | MS.gene49082:CDS | 35.0% | |
| AACTCAGGTAAGAACAATTC+AGG | - | chr1.3:69456342-69456361 | MS.gene49082:CDS | 35.0% | |
| AATGCATAAGGTAATTGCTC+AGG | - | chr1.3:69459831-69459850 | MS.gene49082:intron | 35.0% | |
| AATTCTATTAAGGGCCTGTT+TGG | - | chr1.3:69457875-69457894 | MS.gene49082:CDS | 35.0% | |
| ACAGGTAACTATTCAGAATG+TGG | - | chr1.3:69457605-69457624 | MS.gene49082:CDS | 35.0% | |
| AGAAAACTGCTGTTCAAGAT+GGG | - | chr1.3:69456752-69456771 | MS.gene49082:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | - | chr1.3:69460023-69460042 | MS.gene49082:intron | 35.0% | |
| AGAAGAAAAGATAGAGATGC+AGG | - | chr1.3:69459045-69459064 | MS.gene49082:CDS | 35.0% | |
| AGGGTTCATGATTGTGTTAA+AGG | + | chr1.3:69460572-69460591 | None:intergenic | 35.0% | |
| AGTAGATCTGATGCATCTAA+TGG | - | chr1.3:69458065-69458084 | MS.gene49082:CDS | 35.0% | |
| ATAACTCAAATACGACGTTG+TGG | + | chr1.3:69460625-69460644 | None:intergenic | 35.0% | |
| ATTGGAATTTCAAGCAACTC+AGG | - | chr1.3:69456327-69456346 | MS.gene49082:CDS | 35.0% | |
| CATATAAGAGAGAGTTCAGA+AGG | + | chr1.3:69457698-69457717 | None:intergenic | 35.0% | |
| CATGTTACAGAATGAACACT+CGG | - | chr1.3:69458976-69458995 | MS.gene49082:CDS | 35.0% | |
| CCCGAATTTGCAAATTTCAA+GGG | + | chr1.3:69457061-69457080 | None:intergenic | 35.0% | |
| CCCTTGAAATTTGCAAATTC+GGG | - | chr1.3:69457058-69457077 | MS.gene49082:intron | 35.0% | |
| CGCAAAAACTAAAGAACTTG+AGG | - | chr1.3:69459528-69459547 | MS.gene49082:intron | 35.0% | |
| CTTCCTCATTTCTGCAAATA+AGG | + | chr1.3:69457735-69457754 | None:intergenic | 35.0% | |
| CTTGTTAGGGATTCAAAATC+AGG | - | chr1.3:69456814-69456833 | MS.gene49082:intron | 35.0% | |
| GATTGTGTTAAAGGGAACAA+GGG | + | chr1.3:69460563-69460582 | None:intergenic | 35.0% | |
| GCCCTTGAAATTTGCAAATT+CGG | - | chr1.3:69457057-69457076 | MS.gene49082:intron | 35.0% | |
| GCTTCAGTTAGATGCAATAA+AGG | - | chr1.3:69458583-69458602 | MS.gene49082:CDS | 35.0% | |
| GGAAACTGAACTGAAAGAAA+TGG | - | chr1.3:69460772-69460791 | MS.gene49082:intron | 35.0% | |
| GGGTTCATGATTGTGTTAAA+GGG | + | chr1.3:69460571-69460590 | None:intergenic | 35.0% | |
| GTAACTATTCAGAATGTGGA+AGG | - | chr1.3:69457609-69457628 | MS.gene49082:CDS | 35.0% | |
| GTCTAGATCAGAAATGCATA+AGG | - | chr1.3:69459819-69459838 | MS.gene49082:intron | 35.0% | |
| TAACAGAAGGATATGTTGGT+CGG | - | chr1.3:69456916-69456935 | MS.gene49082:intron | 35.0% | |
| TAGATTTGAAGATGAACTCC+AGG | - | chr1.3:69459156-69459175 | MS.gene49082:intron | 35.0% | |
| TATAAGAGAGAGTTCAGAAG+GGG | + | chr1.3:69457696-69457715 | None:intergenic | 35.0% | |
| TCTTCAAAATCTGGCTACTT+GGG | - | chr1.3:69456974-69456993 | MS.gene49082:intron | 35.0% | |
| TGATTGTGTTAAAGGGAACA+AGG | + | chr1.3:69460564-69460583 | None:intergenic | 35.0% | |
| TGCAGAAATGAGGAAGATAA+TGG | - | chr1.3:69457739-69457758 | MS.gene49082:CDS | 35.0% | |
| TGTGTTTCATTTCATTGTGC+TGG | + | chr1.3:69459618-69459637 | None:intergenic | 35.0% | |
| TTCTTCAAAATCTGGCTACT+TGG | - | chr1.3:69456973-69456992 | MS.gene49082:intron | 35.0% | |
| TTGAAACACCAATTGAGCTA+CGG | - | chr1.3:69457790-69457809 | MS.gene49082:CDS | 35.0% | |
| TTGTAGGGTTCTTCAAAATC+TGG | - | chr1.3:69456965-69456984 | MS.gene49082:intron | 35.0% | |
| TTTGTTCTAGCATTGCTTCA+AGG | + | chr1.3:69458706-69458725 | None:intergenic | 35.0% | |
| ! | AGTTCTGTCTGAAGCTATAA+GGG | + | chr1.3:69458121-69458140 | None:intergenic | 35.0% |
| ! | CTCAAATTCTGAGCTTCTTT+TGG | - | chr1.3:69458670-69458689 | MS.gene49082:CDS | 35.0% |
| ! | GAATGCATTGATGGTATCTT+TGG | - | chr1.3:69456693-69456712 | MS.gene49082:intron | 35.0% |
| ! | GTACTACTTAAGAGTGTGTT+TGG | - | chr1.3:69457184-69457203 | MS.gene49082:intron | 35.0% |
| ! | TCAAGATGGGACTTGTTTAT+GGG | - | chr1.3:69456765-69456784 | MS.gene49082:intron | 35.0% |
| ! | TTCAAGATGGGACTTGTTTA+TGG | - | chr1.3:69456764-69456783 | MS.gene49082:intron | 35.0% |
| ! | TTCCAATCGACCTTGTTATA+TGG | + | chr1.3:69460327-69460346 | None:intergenic | 35.0% |
| !! | AGAAAGACAACAGCTTGTTA+TGG | - | chr1.3:69460841-69460860 | MS.gene49082:CDS | 35.0% |
| !! | ATGTGAAGTTCCAGTTTTGA+AGG | + | chr1.3:69457461-69457480 | None:intergenic | 35.0% |
| !! | CCATGAGAAGTACTAAAAAG+CGG | + | chr1.3:69460283-69460302 | None:intergenic | 35.0% |
| !! | CTAAACAGAAACTTGTTACC+AGG | - | chr1.3:69457954-69457973 | MS.gene49082:CDS | 35.0% |
| !! | CTTCAAGTTTTTAGAGGTCT+TGG | + | chr1.3:69458543-69458562 | None:intergenic | 35.0% |
| !! | GATTAGTCTGAAATTTGCAG+AGG | - | chr1.3:69460811-69460830 | MS.gene49082:intron | 35.0% |
| !! | GTTTTCTCTAGTTTCACTGT+TGG | + | chr1.3:69456739-69456758 | None:intergenic | 35.0% |
| !!! | TTTTTTCACTTTGCATAGCC+TGG | + | chr1.3:69459177-69459196 | None:intergenic | 35.0% |
| AAAAACTGAGCAGGAAGAAC+GGG | - | chr1.3:69459192-69459211 | MS.gene49082:intron | 40.0% | |
| AACTAGAGTTGCAAGCACTT+CGG | - | chr1.3:69458375-69458394 | MS.gene49082:CDS | 40.0% | |
| AAGGGCAGAGAAACAGTAAT+TGG | + | chr1.3:69457043-69457062 | None:intergenic | 40.0% | |
| ACATACGCTGAATCAGTACT+TGG | - | chr1.3:69457477-69457496 | MS.gene49082:CDS | 40.0% | |
| ACTGAACTCCTTGGATTCTA+AGG | + | chr1.3:69460182-69460201 | None:intergenic | 40.0% | |
| AGAAATGCAATCAAGAGCTC+AGG | - | chr1.3:69459410-69459429 | MS.gene49082:CDS | 40.0% | |
| AGATGCATCAGATCTACTCT+TGG | + | chr1.3:69458063-69458082 | None:intergenic | 40.0% | |
| AGGTAGAAAAAGAAAGCAGC+CGG | - | chr1.3:69458402-69458421 | MS.gene49082:CDS | 40.0% | |
| AGTTTAGGCGATTGGACAAA+CGG | - | chr1.3:69458239-69458258 | MS.gene49082:CDS | 40.0% | |
| ATAAGAGAGAGTTCAGAAGG+GGG | + | chr1.3:69457695-69457714 | None:intergenic | 40.0% | |
| ATAAGAGGTCAAATACAGGC+TGG | - | chr1.3:69458192-69458211 | MS.gene49082:CDS | 40.0% | |
| ATTGTGTCTCGTCTTTCTCA+GGG | + | chr1.3:69459236-69459255 | None:intergenic | 40.0% | |
| CAGTTTGCAGAAAGAACAAG+TGG | - | chr1.3:69459636-69459655 | MS.gene49082:intron | 40.0% | |
| CGCAAAATCAAGTGCATAAG+AGG | - | chr1.3:69458177-69458196 | MS.gene49082:CDS | 40.0% | |
| CTCAAGAATAACAAAGGACG+AGG | - | chr1.3:69459745-69459764 | MS.gene49082:intron | 40.0% | |
| CTCCATATAACAAGGTCGAT+TGG | - | chr1.3:69460322-69460341 | MS.gene49082:CDS | 40.0% | |
| CTGAAATTTGCAGAGGTAGA+GGG | - | chr1.3:69460818-69460837 | MS.gene49082:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | - | chr1.3:69460024-69460043 | MS.gene49082:intron | 40.0% | |
| GAAAGATTACAAGAGCCTTC+AGG | - | chr1.3:69458284-69458303 | MS.gene49082:CDS | 40.0% | |
| GAATTGTTATAAGCAACGCG+AGG | - | chr1.3:69458850-69458869 | MS.gene49082:CDS | 40.0% | |
| GACGGAGGTAGTAATAAGTA+TGG | + | chr1.3:69459859-69459878 | None:intergenic | 40.0% | |
| GAGAAAACTGCTGTTCAAGA+TGG | - | chr1.3:69456751-69456770 | MS.gene49082:intron | 40.0% | |
| GAGTGTGTTTGGTTATGTTG+TGG | - | chr1.3:69457195-69457214 | MS.gene49082:intron | 40.0% | |
| GCAAAGTGAAAAAACTGAGC+AGG | - | chr1.3:69459183-69459202 | MS.gene49082:intron | 40.0% | |
| GCCCGAATTTGCAAATTTCA+AGG | + | chr1.3:69457062-69457081 | None:intergenic | 40.0% | |
| GCTGTACGTAATCTCAAGAA+TGG | - | chr1.3:69460863-69460882 | MS.gene49082:CDS | 40.0% | |
| GCTGTGGGACTTTATAATGA+TGG | - | chr1.3:69457763-69457782 | MS.gene49082:CDS | 40.0% | |
| GCTTATAAAAGAGCTCACAG+TGG | - | chr1.3:69458883-69458902 | MS.gene49082:CDS | 40.0% | |
| GGAGAAAGAACTGAGAATAC+AGG | - | chr1.3:69459129-69459148 | MS.gene49082:intron | 40.0% | |
| GGCTCTTGTAATCTTTCTCT+CGG | + | chr1.3:69458281-69458300 | None:intergenic | 40.0% | |
| GTAGATGAATAATGTGGGTG+TGG | + | chr1.3:69457155-69457174 | None:intergenic | 40.0% | |
| GTGCATAAGAGGTCAAATAC+AGG | - | chr1.3:69458188-69458207 | MS.gene49082:CDS | 40.0% | |
| GTTTAGAAAAGTTGCAGCTG+TGG | + | chr1.3:69457940-69457959 | None:intergenic | 40.0% | |
| TACTTCTCATGGTGTGAATG+TGG | - | chr1.3:69460291-69460310 | MS.gene49082:intron | 40.0% | |
| TATGACCTCAAGAGACAATG+AGG | - | chr1.3:69459774-69459793 | MS.gene49082:intron | 40.0% | |
| TATTGTGTCTCGTCTTTCTC+AGG | + | chr1.3:69459237-69459256 | None:intergenic | 40.0% | |
| TCAAATCTGACAATGGGGTT+TGG | - | chr1.3:69456485-69456504 | MS.gene49082:intron | 40.0% | |
| TCAGCATCACTGTCAGAATT+AGG | + | chr1.3:69460692-69460711 | None:intergenic | 40.0% | |
| TCAGCATCAGATGGAAGTTT+AGG | - | chr1.3:69458224-69458243 | MS.gene49082:CDS | 40.0% | |
| TCGAAGAAGCTGATGAATTG+CGG | - | chr1.3:69459356-69459375 | MS.gene49082:CDS | 40.0% | |
| TGAGCTCTTGATTGCATTTC+TGG | + | chr1.3:69459411-69459430 | None:intergenic | 40.0% | |
| TGGAAGGATATACTGCTGAA+AGG | - | chr1.3:69457625-69457644 | MS.gene49082:CDS | 40.0% | |
| TGTCAATTAAATTGGGACGG+AGG | + | chr1.3:69459874-69459893 | None:intergenic | 40.0% | |
| TTTCTTCCATAAGCCTGTTG+TGG | + | chr1.3:69459384-69459403 | None:intergenic | 40.0% | |
| ! | AAGAACTTGAGGAAGCACAA+AGG | - | chr1.3:69459539-69459558 | MS.gene49082:CDS | 40.0% |
| ! | ATTTTGGACACTGAACTCCT+TGG | + | chr1.3:69460191-69460210 | None:intergenic | 40.0% |
| ! | CACTTGATTTTGCGTTGCAT+TGG | + | chr1.3:69458171-69458190 | None:intergenic | 40.0% |
| ! | GAGTTCTGTCTGAAGCTATA+AGG | + | chr1.3:69458122-69458141 | None:intergenic | 40.0% |
| ! | GTGAAATTGCTTCTCTGAAG+AGG | - | chr1.3:69458336-69458355 | MS.gene49082:CDS | 40.0% |
| ! | TCAAATACAGGCTGGTCAAT+GGG | - | chr1.3:69458200-69458219 | MS.gene49082:CDS | 40.0% |
| ! | TCTGAAATTTGCAGAGGTAG+AGG | - | chr1.3:69460817-69460836 | MS.gene49082:intron | 40.0% |
| !!! | CCGCTTTTTAGTACTTCTCA+TGG | - | chr1.3:69460280-69460299 | MS.gene49082:intron | 40.0% |
| AAGAGACAATGAGGCTGCTA+AGG | - | chr1.3:69459783-69459802 | MS.gene49082:intron | 45.0% | |
| AAGGGAACAAGGGATTCAGA+TGG | + | chr1.3:69460553-69460572 | None:intergenic | 45.0% | |
| AAGTGGCAGTCCTAAAGGAA+AGG | - | chr1.3:69460738-69460757 | MS.gene49082:intron | 45.0% | |
| ACGCTGAATCAGTACTTGGT+GGG | - | chr1.3:69457481-69457500 | MS.gene49082:CDS | 45.0% | |
| ACTGCTATTAGCAAGTCTGG+AGG | - | chr1.3:69460502-69460521 | MS.gene49082:intron | 45.0% | |
| AGCACTGCTATTAGCAAGTC+TGG | - | chr1.3:69460499-69460518 | MS.gene49082:intron | 45.0% | |
| ATCTAATGGCATCAGTCCTG+GGG | - | chr1.3:69458079-69458098 | MS.gene49082:CDS | 45.0% | |
| ATGAATTGCGGAACCACAAC+AGG | - | chr1.3:69459368-69459387 | MS.gene49082:CDS | 45.0% | |
| CAGATGGAAGTTTAGGCGAT+TGG | - | chr1.3:69458231-69458250 | MS.gene49082:CDS | 45.0% | |
| CATCTAATGGCATCAGTCCT+GGG | - | chr1.3:69458078-69458097 | MS.gene49082:CDS | 45.0% | |
| CTATTAGCAAGTCTGGAGGA+AGG | - | chr1.3:69460506-69460525 | MS.gene49082:intron | 45.0% | |
| GAATGAAGTGGCAGTCCTAA+AGG | - | chr1.3:69460733-69460752 | MS.gene49082:intron | 45.0% | |
| GGTAGAAAAAGAAAGCAGCC+GGG | - | chr1.3:69458403-69458422 | MS.gene49082:CDS | 45.0% | |
| GTAGAAAAAGAAAGCAGCCG+GGG | - | chr1.3:69458404-69458423 | MS.gene49082:CDS | 45.0% | |
| GTCTCGATAAATTCTGTCCC+CGG | + | chr1.3:69458424-69458443 | None:intergenic | 45.0% | |
| TACGCTGAATCAGTACTTGG+TGG | - | chr1.3:69457480-69457499 | MS.gene49082:CDS | 45.0% | |
| TCAGAAGGGGGAAATTGCAA+TGG | + | chr1.3:69457683-69457702 | None:intergenic | 45.0% | |
| TGATGCTGAACGCCTTACAA+AGG | - | chr1.3:69460703-69460722 | MS.gene49082:intron | 45.0% | |
| TGGGTGTGGTTGTTGAGAAT+TGG | + | chr1.3:69457141-69457160 | None:intergenic | 45.0% | |
| TTACAAGAGCCTTCAGGCAA+TGG | - | chr1.3:69458290-69458309 | MS.gene49082:CDS | 45.0% | |
| ! | AATTGCTTCTCTGAAGAGGC+AGG | - | chr1.3:69458340-69458359 | MS.gene49082:CDS | 45.0% |
| ! | ACAAAGGCACAGGGATGAAA+AGG | - | chr1.3:69459555-69459574 | MS.gene49082:intron | 45.0% |
| ! | ATCGTCATTGGTCTCCATCA+AGG | - | chr1.3:69459081-69459100 | MS.gene49082:CDS | 45.0% |
| ! | GTCAAATACAGGCTGGTCAA+TGG | - | chr1.3:69458199-69458218 | MS.gene49082:CDS | 45.0% |
| ! | GTTGGTTTCCCAACATCATC+TGG | + | chr1.3:69456721-69456740 | None:intergenic | 45.0% |
| ! | TCAATGGGTTCAGCATCAGA+TGG | - | chr1.3:69458215-69458234 | MS.gene49082:CDS | 45.0% |
| !! | CTTTGGTGCCAGATGATGTT+GGG | - | chr1.3:69456710-69456729 | MS.gene49082:intron | 45.0% |
| !! | GAGGAAGATAATGGAGCTGT+GGG | - | chr1.3:69457748-69457767 | MS.gene49082:CDS | 45.0% |
| !! | TCTTTGGTGCCAGATGATGT+TGG | - | chr1.3:69456709-69456728 | MS.gene49082:intron | 45.0% |
| !! | TGAGGAAGATAATGGAGCTG+TGG | - | chr1.3:69457747-69457766 | MS.gene49082:CDS | 45.0% |
| AGCAGCCTCATTGTCTCTTG+AGG | + | chr1.3:69459782-69459801 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | - | chr1.3:69460028-69460047 | MS.gene49082:intron | 50.0% | |
| CAGAACTCAATGCCACCAAG+AGG | - | chr1.3:69458134-69458153 | MS.gene49082:CDS | 50.0% | |
| CAGGGACTCTTCTGCTTGAA+TGG | + | chr1.3:69459218-69459237 | None:intergenic | 50.0% | |
| CTGTACTGCCGTAGCTCAAT+TGG | + | chr1.3:69457801-69457820 | None:intergenic | 50.0% | |
| GCATCTAATGGCATCAGTCC+TGG | - | chr1.3:69458077-69458096 | MS.gene49082:CDS | 50.0% | |
| TATCGCATCTGAGCAGCTTC+AGG | - | chr1.3:69459261-69459280 | MS.gene49082:intron | 50.0% | |
| TTGGCCTCAACTGTTCCTCT+TGG | + | chr1.3:69458152-69458171 | None:intergenic | 50.0% | |
| ! | TGAGGAAGCACAAAGGCACA+GGG | - | chr1.3:69459546-69459565 | MS.gene49082:CDS | 50.0% |
| ! | TTGAGGAAGCACAAAGGCAC+AGG | - | chr1.3:69459545-69459564 | MS.gene49082:CDS | 50.0% |
| AGGCGATTGGACAAACGGCA+CGG | - | chr1.3:69458244-69458263 | MS.gene49082:CDS | 55.0% | |
| ATCTGATACTCCCTCCGTCC+CGG | + | chr1.3:69460045-69460064 | None:intergenic | 55.0% | |
| CAGTCCTGGGGTAGCTTCAT+GGG | - | chr1.3:69458091-69458110 | MS.gene49082:CDS | 55.0% | |
| GAAGAGGCAGGCAGAACTGT+CGG | - | chr1.3:69458352-69458371 | MS.gene49082:CDS | 55.0% | |
| GCCACCAAGAGGAACAGTTG+AGG | - | chr1.3:69458145-69458164 | MS.gene49082:CDS | 55.0% | |
| GCCTCAACTGTTCCTCTTGG+TGG | + | chr1.3:69458149-69458168 | None:intergenic | 55.0% | |
| GCGGAACCACAACAGGCTTA+TGG | - | chr1.3:69459375-69459394 | MS.gene49082:CDS | 55.0% | |
| GTAGCGTTGCCATTGCCTGA+AGG | + | chr1.3:69458302-69458321 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | - | chr1.3:69460032-69460051 | MS.gene49082:intron | 55.0% | |
| GTTGCAAGCACTTCGGAAGC+AGG | - | chr1.3:69458382-69458401 | MS.gene49082:CDS | 55.0% | |
| TCAGTCCTGGGGTAGCTTCA+TGG | - | chr1.3:69458090-69458109 | MS.gene49082:CDS | 55.0% | |
| TCATCCCATGAAGCTACCCC+AGG | + | chr1.3:69458098-69458117 | None:intergenic | 55.0% | |
| CGCATCTGAGCAGCTTCAGG+AGG | - | chr1.3:69459264-69459283 | MS.gene49082:intron | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | - | chr1.3:69460031-69460050 | MS.gene49082:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69456280 | 69460898 | 69456280 | ID=MS.gene49082 |
| chr1.3 | mRNA | 69456280 | 69460898 | 69456280 | ID=MS.gene49082.t1;Parent=MS.gene49082 |
| chr1.3 | exon | 69460830 | 69460898 | 69460830 | ID=MS.gene49082.t1.exon1;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69460830 | 69460898 | 69460830 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69460302 | 69460502 | 69460302 | ID=MS.gene49082.t1.exon2;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69460302 | 69460502 | 69460302 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69460085 | 69460207 | 69460085 | ID=MS.gene49082.t1.exon3;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69460085 | 69460207 | 69460085 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69459532 | 69459569 | 69459532 | ID=MS.gene49082.t1.exon4;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69459532 | 69459569 | 69459532 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69459335 | 69459434 | 69459335 | ID=MS.gene49082.t1.exon5;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69459335 | 69459434 | 69459335 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69457338 | 69459131 | 69457338 | ID=MS.gene49082.t1.exon6;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69457338 | 69459131 | 69457338 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69456651 | 69456694 | 69456651 | ID=MS.gene49082.t1.exon7;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69456651 | 69456694 | 69456651 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| chr1.3 | exon | 69456280 | 69456475 | 69456280 | ID=MS.gene49082.t1.exon8;Parent=MS.gene49082.t1 |
| chr1.3 | CDS | 69456280 | 69456475 | 69456280 | ID=cds.MS.gene49082.t1;Parent=MS.gene49082.t1 |
| Gene Sequence |
| Protein sequence |
