AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene035678

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035678.t1 MTR_4g128930 82.447 376 9 5 1 320 1 375 0.0 606
MS.gene035678.t1 MTR_3g105710 48.036 331 96 10 20 319 4 289 3.33e-84 256
MS.gene035678.t1 MTR_1g013450 43.103 348 114 8 20 319 4 315 2.11e-81 249
MS.gene035678.t1 MTR_7g018170 64.835 91 32 0 20 110 24 114 2.98e-39 142
MS.gene035678.t1 MTR_7g018170 58.427 89 29 1 232 320 316 396 6.81e-29 114
MS.gene035678.t1 MTR_3g034680 79.487 78 16 0 67 144 12 89 3.43e-38 131
MS.gene035678.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.32e-20 88.2
MS.gene035678.t1 MTR_1g023260 45.161 93 41 1 22 104 5 97 1.35e-20 90.1
MS.gene035678.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 6.70e-19 87.0
MS.gene035678.t1 MTR_5g069480 43.333 90 51 0 21 110 4 93 8.18e-19 85.5
MS.gene035678.t1 MTR_7g108150 28.049 164 99 3 22 185 20 164 3.12e-17 81.6
MS.gene035678.t1 MTR_7g108150 37.349 83 42 1 212 284 287 369 9.31e-12 65.5
MS.gene035678.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.08e-16 78.6
MS.gene035678.t1 MTR_4g067320 39.130 92 47 1 22 104 5 96 1.13e-16 78.6
MS.gene035678.t1 MTR_3g117320 32.331 133 73 2 22 137 5 137 1.81e-16 77.4
MS.gene035678.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.31e-16 76.3
MS.gene035678.t1 MTR_5g021580 43.210 81 38 1 21 93 4 84 2.37e-16 76.3
MS.gene035678.t1 MTR_4g071200 40.860 93 45 1 22 104 5 97 4.62e-16 76.3
MS.gene035678.t1 MTR_3g082630 38.889 90 54 1 21 110 4 92 3.10e-15 76.3
MS.gene035678.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 5.09e-15 73.9
MS.gene035678.t1 MTR_2g099010 36.957 92 49 1 22 104 5 96 5.37e-15 73.6
MS.gene035678.t1 MTR_2g073370 38.043 92 48 1 22 104 5 96 2.48e-14 72.4
MS.gene035678.t1 MTR_3g113070 36.170 94 49 1 22 104 5 98 1.01e-13 69.7
MS.gene035678.t1 MTR_8g104190 58.462 65 25 1 222 286 339 401 4.40e-13 69.7
MS.gene035678.t1 MTR_2g088900 39.024 82 50 0 21 102 100 181 6.27e-13 69.7
MS.gene035678.t1 MTR_7g083540 40.541 74 44 0 22 95 5 78 6.14e-12 66.2
MS.gene035678.t1 MTR_2g096080 39.506 81 41 2 217 289 121 201 6.79e-12 65.1
MS.gene035678.t1 MTR_5g072780 53.226 62 26 1 227 285 155 216 1.43e-11 63.5
MS.gene035678.t1 MTR_1g109350 34.146 82 54 0 20 101 3 84 7.17e-11 62.8
MS.gene035678.t1 MTR_1g110870 69.767 43 13 0 243 285 382 424 7.81e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene035678.t1 AT5G57660 47.978 371 126 11 1 320 1 355 1.39e-97 292
MS.gene035678.t1 AT5G24930 44.444 378 114 11 20 320 4 362 6.07e-86 263
MS.gene035678.t1 AT2G24790 51.186 295 90 8 20 287 6 273 3.92e-83 253
MS.gene035678.t1 AT5G15840 35.657 373 165 11 13 320 11 373 9.31e-68 216
MS.gene035678.t1 AT3G02380 36.264 364 139 9 20 320 14 347 1.46e-67 215
MS.gene035678.t1 AT5G15850 38.292 363 156 8 13 320 6 355 2.87e-67 214
MS.gene035678.t1 AT2G24790 52.604 192 58 7 20 210 6 165 5.54e-55 179
MS.gene035678.t1 AT5G15840 36.620 213 120 7 13 212 11 221 7.13e-39 139
MS.gene035678.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.61e-18 85.9
MS.gene035678.t1 AT2G33500 44.944 89 49 0 22 110 12 100 1.78e-18 85.9
MS.gene035678.t1 AT1G28050 43.820 89 50 0 22 110 9 97 1.58e-17 83.2
MS.gene035678.t1 AT2G21320 40.449 89 45 1 21 101 4 92 9.06e-17 77.0
MS.gene035678.t1 AT1G75540 36.434 129 68 2 22 136 5 133 9.42e-17 80.1
MS.gene035678.t1 AT2G47890 38.462 91 54 1 20 110 11 99 2.57e-16 77.4
MS.gene035678.t1 AT2G47890 38.462 91 54 1 20 110 11 99 2.84e-16 78.6
MS.gene035678.t1 AT2G47890 38.462 91 54 1 20 110 11 99 3.24e-16 78.2
MS.gene035678.t1 AT4G38960 41.304 92 44 2 21 104 4 93 3.46e-16 75.9
MS.gene035678.t1 AT4G38960 41.304 92 44 2 21 104 4 93 3.46e-16 75.9
MS.gene035678.t1 AT1G06040 40.217 92 46 1 22 104 5 96 4.44e-16 77.0
MS.gene035678.t1 AT1G06040 40.217 92 46 1 22 104 5 96 7.00e-16 74.7
MS.gene035678.t1 AT4G15250 33.544 158 90 5 22 175 5 151 7.08e-16 77.4
MS.gene035678.t1 AT5G48250 39.130 92 54 1 21 110 4 95 1.22e-15 77.4
MS.gene035678.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.37e-15 76.3
MS.gene035678.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.37e-15 76.3
MS.gene035678.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.37e-15 76.3
MS.gene035678.t1 AT3G07650 45.205 73 40 0 21 93 4 76 2.37e-15 76.3
MS.gene035678.t1 AT2G31380 36.036 111 57 2 22 123 5 110 4.95e-15 73.9
MS.gene035678.t1 AT1G78600 35.238 105 59 1 22 117 5 109 1.62e-14 73.6
MS.gene035678.t1 AT1G78600 38.043 92 48 1 22 104 5 96 1.67e-14 73.2
MS.gene035678.t1 AT3G21880 40.000 95 54 2 16 110 4 95 4.64e-14 72.4
MS.gene035678.t1 AT3G21880 40.000 95 54 2 16 110 4 95 4.64e-14 72.4
MS.gene035678.t1 AT1G73870 53.623 69 29 1 220 288 325 390 8.07e-14 72.0
MS.gene035678.t1 AT3G21880 39.326 89 52 1 22 110 5 91 1.00e-13 71.6
MS.gene035678.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.41e-12 68.2
MS.gene035678.t1 AT1G68190 36.585 82 52 0 20 101 12 93 1.41e-12 68.2
MS.gene035678.t1 AT1G68190 36.585 82 52 0 20 101 41 122 1.50e-12 68.2
MS.gene035678.t1 AT1G49130 42.991 107 50 4 186 290 222 319 5.64e-12 65.9
MS.gene035678.t1 AT1G49130 42.991 107 50 4 186 290 229 326 6.00e-12 65.9
MS.gene035678.t1 AT4G39070 32.500 120 71 1 22 131 5 124 9.12e-12 64.3
MS.gene035678.t1 AT1G68520 67.391 46 15 0 243 288 357 402 1.47e-11 65.1
MS.gene035678.t1 AT4G10240 28.767 146 82 3 22 149 5 146 2.53e-11 61.6
MS.gene035678.t1 AT1G25440 69.767 43 13 0 243 285 361 403 5.66e-11 63.5

Find 74 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAACCGGCCTTTAATTCT+AGG 0.209256 8.1:+3942582 None:intergenic
TTGAGTTTGGATCCGAAATT+AGG 0.238048 8.1:+3943203 None:intergenic
ATCTTGAGTTTCATTGAGTT+TGG 0.285458 8.1:+3943190 None:intergenic
GTCCACATCCGAGTCAATTT+CGG 0.307960 8.1:+3942551 None:intergenic
TGCTGCAGTTAATATTGTTC+TGG 0.321062 8.1:+3943099 None:intergenic
AGAGATGTTCTTCTCTGATA+TGG 0.330404 8.1:-3943156 MS.gene035678:CDS
GAAACCCGGCCTAGAATTAA+AGG 0.334745 8.1:-3942591 MS.gene035678:CDS
CTTCCCGCCACGAGCGCGTC+TGG 0.340581 8.1:-3943502 MS.gene035678:CDS
TGCTGCAGCAGCGGCGGTGG+AGG 0.348757 8.1:+3943310 None:intergenic
CTGATTCCGAATCCTAATTT+CGG 0.371287 8.1:-3943215 MS.gene035678:CDS
TTTCGGTTCGTTTAGCGAAC+CGG 0.407227 8.1:+3942568 None:intergenic
GGAGTAGGTTTAGTTTGAAC+AGG 0.409524 8.1:+3943053 None:intergenic
GGCTGCTGCAGCAGCGGCGG+TGG 0.410930 8.1:+3943307 None:intergenic
CGCGGCTGCTGCAGCAGCGG+CGG 0.413463 8.1:+3943304 None:intergenic
GAGTTTGTTAGCAGAGTGAA+TGG 0.415127 8.1:+3943526 None:intergenic
AGGAACAACGCTATCGTTCA+TGG 0.416132 8.1:+3943073 None:intergenic
GTTCCTACTGACGACGGTTA+CGG 0.428387 8.1:-3943266 MS.gene035678:CDS
AGTTCCTTCATCTATGCTAA+TGG 0.433285 8.1:-3942499 MS.gene035678:CDS
TTGCTCCTTGCACCACCCCT+TGG 0.448969 8.1:+3942724 None:intergenic
GAGTAATCAAAATCAAGAAA+TGG 0.454052 8.1:+3943131 None:intergenic
TTGGATCCGAAATTAGGATT+CGG 0.457793 8.1:+3943209 None:intergenic
GCTTTGCACGTGACGGAAGC+TGG 0.472622 8.1:+3943455 None:intergenic
AAAGTGGGAACGACGCCGTA+TGG 0.475583 8.1:+3942471 None:intergenic
AACCGAAATTGACTCGGATG+TGG 0.481901 8.1:-3942553 MS.gene035678:CDS
AGACGCGGCTGCTGCAGCAG+CGG 0.489035 8.1:+3943301 None:intergenic
CCGGCCTTTAATTCTAGGCC+GGG 0.498099 8.1:+3942587 None:intergenic
ACCGGCCTTTAATTCTAGGC+CGG 0.502804 8.1:+3942586 None:intergenic
GGAACTGCGAGAGGATCAGC+AGG 0.506955 8.1:+3942516 None:intergenic
AGCAACACAATTATGTGGAA+TGG 0.513777 8.1:-3942706 MS.gene035678:CDS
GAGTCAAAGAAAGGCTCGAC+GGG 0.517190 8.1:+3943353 None:intergenic
TTGCAAGAATCACATAGCTT+AGG 0.521043 8.1:+3943614 None:intergenic
CATAAGATGGGTATTGAAAG+AGG 0.525020 8.1:-3943674 None:intergenic
CATCCAGACGCGCTCGTGGC+GGG 0.525795 8.1:+3943499 None:intergenic
ATGCTAATGGACTGTCCATA+CGG 0.541142 8.1:-3942486 MS.gene035678:CDS
GAGCGAGTGGATTGGCGGAG+TGG 0.557021 8.1:+3943393 None:intergenic
TGCGTCAGCTTTGCACGTGA+CGG 0.560515 8.1:+3943448 None:intergenic
TTATGAGGTACAGAGAGAAG+AGG 0.563746 8.1:-3942668 MS.gene035678:CDS
TGACCGTAACCGTCGTCAGT+AGG 0.571111 8.1:+3943263 None:intergenic
TGGATTGGCGGAGTGGATGT+CGG 0.572687 8.1:+3943400 None:intergenic
AGTAACCAAGGGGTGGTGCA+AGG 0.573333 8.1:-3942729 MS.gene035678:CDS
TTTGTTAGCAGAGTGAATGG+TGG 0.574357 8.1:+3943529 None:intergenic
CAAGAATCACATAGCTTAGG+TGG 0.574456 8.1:+3943617 None:intergenic
GATTCAGCGGAGTCAAAGAA+AGG 0.575805 8.1:+3943344 None:intergenic
GTGACGACGAGCGAGTGGAT+TGG 0.575999 8.1:+3943385 None:intergenic
TTATGATTCATCATCCGCGC+TGG 0.581963 8.1:+3943032 None:intergenic
CAGTCCATTAGCATAGATGA+AGG 0.582055 8.1:+3942495 None:intergenic
TGGAATGGATCGTGAAGCGA+GGG 0.592479 8.1:-3942691 MS.gene035678:CDS
ACGACGAGCGAGTGGATTGG+CGG 0.592706 8.1:+3943388 None:intergenic
CAAGGAGCAACACAATTATG+TGG 0.592806 8.1:-3942711 MS.gene035678:CDS
ATGATGAATCATAACTCAGA+AGG 0.596503 8.1:-3943023 MS.gene035678:intron
GATCAGCAGGGTTATAGAGA+CGG 0.597767 8.1:+3942529 None:intergenic
CGTTCGTGACGACGAGCGAG+TGG 0.599256 8.1:+3943380 None:intergenic
ATCGTGAAGCGAGGGTTATG+AGG 0.603818 8.1:-3942683 MS.gene035678:CDS
ACATCCAGACGCGCTCGTGG+CGG 0.606168 8.1:+3943498 None:intergenic
TTCATCATCCGCGCTGGAGT+AGG 0.609886 8.1:+3943038 None:intergenic
CCCGGCCTAGAATTAAAGGC+CGG 0.612766 8.1:-3942587 MS.gene035678:CDS
GGGGTGTGAATAGTAACCAA+GGG 0.630822 8.1:-3942740 MS.gene035678:CDS
GGATTTGACGACGGATTCAG+CGG 0.633353 8.1:+3943331 None:intergenic
GTGGAATGGATCGTGAAGCG+AGG 0.634097 8.1:-3942692 MS.gene035678:CDS
GGAGTCAAAGAAAGGCTCGA+CGG 0.644574 8.1:+3943352 None:intergenic
CACACATCCAGACGCGCTCG+TGG 0.646583 8.1:+3943495 None:intergenic
GAAAAGCTTATGCAGAAACC+CGG 0.650052 8.1:-3942605 MS.gene035678:CDS
ATAGATGAAGGAACTGCGAG+AGG 0.656412 8.1:+3942507 None:intergenic
TAAACGAACCGAAATTGACT+CGG 0.658214 8.1:-3942559 MS.gene035678:CDS
TTCGTTGTTCCTACTGACGA+CGG 0.659626 8.1:-3943272 MS.gene035678:CDS
GGCGGTGGAGGATTTGACGA+CGG 0.677124 8.1:+3943322 None:intergenic
ATAGAAATGCAGAATCAGAA+CGG 0.678407 8.1:+3943567 None:intergenic
TGTGAATAGTAACCAAGGGG+TGG 0.689533 8.1:-3942736 MS.gene035678:CDS
ATGATGCTGAAGCAGCTGCG+TGG 0.709512 8.1:-3943238 MS.gene035678:CDS
AACAACGAAATTGAAAGACG+CGG 0.720436 8.1:+3943286 None:intergenic
GGGTGTGAATAGTAACCAAG+GGG 0.734808 8.1:-3942739 MS.gene035678:CDS
AAGATGGGTATTGAAAGAGG+AGG 0.750089 8.1:-3943671 MS.gene035678:CDS
AAACTAAACCTACTCCAGCG+CGG 0.776053 8.1:-3943046 MS.gene035678:CDS
GAACTGCGAGAGGATCAGCA+GGG 0.795439 8.1:+3942517 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTAATTACTTACGCTA+TGG + chr8.1:3943204-3943223 None:intergenic 20.0%
! GAGTAATCAAAATCAAGAAA+TGG + chr8.1:3943007-3943026 None:intergenic 25.0%
!! GATATCATACAATTTTGGAT+CGG - chr8.1:3943357-3943376 MS.gene035678:CDS 25.0%
!! TCAGAGATATCATACAATTT+TGG - chr8.1:3943352-3943371 MS.gene035678:CDS 25.0%
ATAGAAATGCAGAATCAGAA+CGG + chr8.1:3942571-3942590 None:intergenic 30.0%
ATCTTGAGTTTCATTGAGTT+TGG + chr8.1:3942948-3942967 None:intergenic 30.0%
ATGATGAATCATAACTCAGA+AGG - chr8.1:3943112-3943131 MS.gene035678:CDS 30.0%
! GAATAGTCTTCTCGAATTTT+CGG + chr8.1:3943498-3943517 None:intergenic 30.0%
!! TGATTTGGTTTGTTATTAGC+AGG - chr8.1:3943279-3943298 MS.gene035678:CDS 30.0%
AACAACGAAATTGAAAGACG+CGG + chr8.1:3942852-3942871 None:intergenic 35.0%
AGAGATGTTCTTCTCTGATA+TGG - chr8.1:3942979-3942998 MS.gene035678:intron 35.0%
AGCAACACAATTATGTGGAA+TGG - chr8.1:3943429-3943448 MS.gene035678:CDS 35.0%
AGTTCCTTCATCTATGCTAA+TGG - chr8.1:3943636-3943655 MS.gene035678:CDS 35.0%
ATTACTTACGCTATGGCTAA+TGG + chr8.1:3943197-3943216 None:intergenic 35.0%
CTGATTCCGAATCCTAATTT+CGG - chr8.1:3942920-3942939 MS.gene035678:intron 35.0%
TAAACGAACCGAAATTGACT+CGG - chr8.1:3943576-3943595 MS.gene035678:CDS 35.0%
TGCTGCAGTTAATATTGTTC+TGG + chr8.1:3943039-3943058 None:intergenic 35.0%
TTGAGTTTGGATCCGAAATT+AGG + chr8.1:3942935-3942954 None:intergenic 35.0%
TTGCAAGAATCACATAGCTT+AGG + chr8.1:3942524-3942543 None:intergenic 35.0%
TTGGATCCGAAATTAGGATT+CGG + chr8.1:3942929-3942948 None:intergenic 35.0%
!! GGAATGTGATGGATAGTTAA+AGG + chr8.1:3943176-3943195 None:intergenic 35.0%
CAAGAATCACATAGCTTAGG+TGG + chr8.1:3942521-3942540 None:intergenic 40.0%
CAAGGAGCAACACAATTATG+TGG - chr8.1:3943424-3943443 MS.gene035678:CDS 40.0%
CAGTCCATTAGCATAGATGA+AGG + chr8.1:3943643-3943662 None:intergenic 40.0%
CTATGGCTAATGGAATGTGA+TGG + chr8.1:3943187-3943206 None:intergenic 40.0%
GAAAAGCTTATGCAGAAACC+CGG - chr8.1:3943530-3943549 MS.gene035678:CDS 40.0%
TTATGAGGTACAGAGAGAAG+AGG - chr8.1:3943467-3943486 MS.gene035678:CDS 40.0%
TTTGTTAGCAGAGTGAATGG+TGG + chr8.1:3942609-3942628 None:intergenic 40.0%
! CAATTTTGGATCGGAATCGA+TGG - chr8.1:3943366-3943385 MS.gene035678:CDS 40.0%
! GGACTAAAGAGTTTTCGAAG+CGG - chr8.1:3942485-3942504 MS.gene035678:CDS 40.0%
!! ATGCTAATGGACTGTCCATA+CGG - chr8.1:3943649-3943668 MS.gene035678:CDS 40.0%
!! GAGTTTGTTAGCAGAGTGAA+TGG + chr8.1:3942612-3942631 None:intergenic 40.0%
!! GGAGTAGGTTTAGTTTGAAC+AGG + chr8.1:3943085-3943104 None:intergenic 40.0%
AAACTAAACCTACTCCAGCG+CGG - chr8.1:3943089-3943108 MS.gene035678:CDS 45.0%
AGGAACAACGCTATCGTTCA+TGG + chr8.1:3943065-3943084 None:intergenic 45.0%
ATAGATGAAGGAACTGCGAG+AGG + chr8.1:3943631-3943650 None:intergenic 45.0%
ATCAGAACGGCAAAAAAGCG+CGG + chr8.1:3942558-3942577 None:intergenic 45.0%
ATCGGAATCGATGGTTTCAG+GGG - chr8.1:3943375-3943394 MS.gene035678:CDS 45.0%
ATCTTCACTTGACGTAGGAG+TGG - chr8.1:3943309-3943328 MS.gene035678:CDS 45.0%
GAAACCCGGCCTAGAATTAA+AGG - chr8.1:3943544-3943563 MS.gene035678:CDS 45.0%
GATCAGCAGGGTTATAGAGA+CGG + chr8.1:3943609-3943628 None:intergenic 45.0%
GATCGGAATCGATGGTTTCA+GGG - chr8.1:3943374-3943393 MS.gene035678:CDS 45.0%
GATTCAGCGGAGTCAAAGAA+AGG + chr8.1:3942794-3942813 None:intergenic 45.0%
GGGGTGTGAATAGTAACCAA+GGG - chr8.1:3943395-3943414 MS.gene035678:CDS 45.0%
GGGTGTGAATAGTAACCAAG+GGG - chr8.1:3943396-3943415 MS.gene035678:CDS 45.0%
GTCCACATCCGAGTCAATTT+CGG + chr8.1:3943587-3943606 None:intergenic 45.0%
TCGTCATCTTCACTTGACGT+AGG - chr8.1:3943304-3943323 MS.gene035678:CDS 45.0%
TGTGAATAGTAACCAAGGGG+TGG - chr8.1:3943399-3943418 MS.gene035678:CDS 45.0%
TTATGATTCATCATCCGCGC+TGG + chr8.1:3943106-3943125 None:intergenic 45.0%
TTCGTTGTTCCTACTGACGA+CGG - chr8.1:3942863-3942882 MS.gene035678:intron 45.0%
! TAAAGAGTTTTCGAAGCGGC+TGG - chr8.1:3942489-3942508 MS.gene035678:CDS 45.0%
! TTTCGGTTCGTTTAGCGAAC+CGG + chr8.1:3943570-3943589 None:intergenic 45.0%
!! AACCGAAATTGACTCGGATG+TGG - chr8.1:3943582-3943601 MS.gene035678:CDS 45.0%
!! TTAATTAATTAATAATGATT+TGG - chr8.1:3943264-3943283 MS.gene035678:CDS 5.0%
ACCGGCCTTTAATTCTAGGC+CGG + chr8.1:3943552-3943571 None:intergenic 50.0%
ATCGTGAAGCGAGGGTTATG+AGG - chr8.1:3943452-3943471 MS.gene035678:CDS 50.0%
GAGTCAAAGAAAGGCTCGAC+GGG + chr8.1:3942785-3942804 None:intergenic 50.0%
GCGAACCGGCCTTTAATTCT+AGG + chr8.1:3943556-3943575 None:intergenic 50.0%
GGAGTCAAAGAAAGGCTCGA+CGG + chr8.1:3942786-3942805 None:intergenic 50.0%
GGATCGGAATCGATGGTTTC+AGG - chr8.1:3943373-3943392 MS.gene035678:CDS 50.0%
GTTCCTACTGACGACGGTTA+CGG - chr8.1:3942869-3942888 MS.gene035678:intron 50.0%
TCGGAATCGATGGTTTCAGG+GGG - chr8.1:3943376-3943395 MS.gene035678:CDS 50.0%
TCTGACACCGTGTTTGCATC+TGG + chr8.1:3943337-3943356 None:intergenic 50.0%
TGGAATGGATCGTGAAGCGA+GGG - chr8.1:3943444-3943463 MS.gene035678:CDS 50.0%
! AGTGGTGCCAGATGCAAACA+CGG - chr8.1:3943327-3943346 MS.gene035678:CDS 50.0%
! GGATTTGACGACGGATTCAG+CGG + chr8.1:3942807-3942826 None:intergenic 50.0%
! GGGGGTGTGAATAGTAACCA+AGG - chr8.1:3943394-3943413 MS.gene035678:CDS 50.0%
AAAGTGGGAACGACGCCGTA+TGG + chr8.1:3943667-3943686 None:intergenic 55.0%
AGTAACCAAGGGGTGGTGCA+AGG - chr8.1:3943406-3943425 MS.gene035678:CDS 55.0%
ATGATGCTGAAGCAGCTGCG+TGG - chr8.1:3942897-3942916 MS.gene035678:intron 55.0%
CCCGGCCTAGAATTAAAGGC+CGG - chr8.1:3943548-3943567 MS.gene035678:CDS 55.0%
CCGGCCTTTAATTCTAGGCC+GGG + chr8.1:3943551-3943570 None:intergenic 55.0%
GAACTGCGAGAGGATCAGCA+GGG + chr8.1:3943621-3943640 None:intergenic 55.0%
GTGGAATGGATCGTGAAGCG+AGG - chr8.1:3943443-3943462 MS.gene035678:CDS 55.0%
TGACCGTAACCGTCGTCAGT+AGG + chr8.1:3942875-3942894 None:intergenic 55.0%
TGCGTCAGCTTTGCACGTGA+CGG + chr8.1:3942690-3942709 None:intergenic 55.0%
TTCATCATCCGCGCTGGAGT+AGG + chr8.1:3943100-3943119 None:intergenic 55.0%
! AGAACGGCAAAAAAGCGCGG+CGG + chr8.1:3942555-3942574 None:intergenic 55.0%
!! TGGATTGGCGGAGTGGATGT+CGG + chr8.1:3942738-3942757 None:intergenic 55.0%
GGAACTGCGAGAGGATCAGC+AGG + chr8.1:3943622-3943641 None:intergenic 60.0%
GGCGGTGGAGGATTTGACGA+CGG + chr8.1:3942816-3942835 None:intergenic 60.0%
GTGACGACGAGCGAGTGGAT+TGG + chr8.1:3942753-3942772 None:intergenic 60.0%
TTGCTCCTTGCACCACCCCT+TGG + chr8.1:3943414-3943433 None:intergenic 60.0%
! GAACGGCAAAAAAGCGCGGC+GGG + chr8.1:3942554-3942573 None:intergenic 60.0%
! GCTTTGCACGTGACGGAAGC+TGG + chr8.1:3942683-3942702 None:intergenic 60.0%
!! ACGACGAGCGAGTGGATTGG+CGG + chr8.1:3942750-3942769 None:intergenic 60.0%
ACATCCAGACGCGCTCGTGG+CGG + chr8.1:3942640-3942659 None:intergenic 65.0%
CACACATCCAGACGCGCTCG+TGG + chr8.1:3942643-3942662 None:intergenic 65.0%
CGTTCGTGACGACGAGCGAG+TGG + chr8.1:3942758-3942777 None:intergenic 65.0%
!! GAGCGAGTGGATTGGCGGAG+TGG + chr8.1:3942745-3942764 None:intergenic 65.0%
AGACGCGGCTGCTGCAGCAG+CGG + chr8.1:3942837-3942856 None:intergenic 70.0%
CATCCAGACGCGCTCGTGGC+GGG + chr8.1:3942639-3942658 None:intergenic 70.0%
CTTCCCGCCACGAGCGCGTC+TGG - chr8.1:3942633-3942652 MS.gene035678:CDS 75.0%
TGCTGCAGCAGCGGCGGTGG+AGG + chr8.1:3942828-3942847 None:intergenic 75.0%
! CGCGGCTGCTGCAGCAGCGG+CGG + chr8.1:3942834-3942853 None:intergenic 80.0%
! GGCTGCTGCAGCAGCGGCGG+TGG + chr8.1:3942831-3942850 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 3942467 3943690 3942467 ID=MS.gene035678
chr8.1 mRNA 3942467 3943690 3942467 ID=MS.gene035678.t1;Parent=MS.gene035678
chr8.1 exon 3943024 3943690 3943024 ID=MS.gene035678.t1.exon1;Parent=MS.gene035678.t1
chr8.1 CDS 3943024 3943690 3943024 ID=cds.MS.gene035678.t1;Parent=MS.gene035678.t1
chr8.1 exon 3942467 3942762 3942467 ID=MS.gene035678.t1.exon2;Parent=MS.gene035678.t1
chr8.1 CDS 3942467 3942762 3942467 ID=cds.MS.gene035678.t1;Parent=MS.gene035678.t1
Gene Sequence

>MS.gene035678

ATGGGTATTGAAAGAGGAGGACTAAAGAGTTTTCGAAGCGGCTGGAGTGTGCCACCTAAGCTATGTGATTCTTGCAAGCTTACTCCCGCCGCGCTTTTTTGCCGTTCTGATTCTGCATTTCTATGCATCAACTGTGATTCCACCATTCACTCTGCTAACAAACTCTCTTCCCGCCACGAGCGCGTCTGGATGTGTGAAGTTTGTGAACAAGCACCAGCTTCCGTCACGTGCAAAGCTGACGCAGCTGCTCTATGCGTCACGTGCGATTCCGACATCCACTCCGCCAATCCACTCGCTCGTCGTCACGAACGTGTTCCCGTCGAGCCTTTCTTTGACTCCGCTGAATCCGTCGTCAAATCCTCCACCGCCGCTGCTGCAGCAGCCGCGTCTTTCAATTTCGTTGTTCCTACTGACGACGGTTACGGTCAAGATGATGCTGAAGCAGCTGCGTGGCTGATTCCGAATCCTAATTTCGGATCCAAACTCAATGAAACTCAAGATATCAAAACTAGAGAGATGTTCTTCTCTGATATGGATCCATTTCTTGATTTTGATTACTCAAACAATTTCCAGAACAATATTAACTGCAGCAACGCCATGAACGATAGCGTTGTTCCTGTTCAAACTAAACCTACTCCAGCGCGGATGATGAATCATAACTCAGAAGGTTGCTTTGACATTGATTTTTGCAGATCGAAGCTATCTTCCTTTAACTATCCATCACATTCCATTAGCCATAGCGTAAGTAATTAATTAATGATTTGATTAATTAAGTAATAAGTGTCATTAGAAGTTAATTAATTAATTAATAATGATTTGGTTTGTTATTAGCAGGTTTCGTCATCTTCACTTGACGTAGGAGTGGTGCCAGATGCAAACACGGTGTCAGAGATATCATACAATTTTGGATCGGAATCGATGGTTTCAGGGGGTGTGAATAGTAACCAAGGGGTGGTGCAAGGAGCAACACAATTATGTGGAATGGATCGTGAAGCGAGGGTTATGAGGTACAGAGAGAAGAGGAAGAACCGAAAATTCGAGAAGACTATTCGTTATGCTTCTCGAAAAGCTTATGCAGAAACCCGGCCTAGAATTAAAGGCCGGTTCGCTAAACGAACCGAAATTGACTCGGATGTGGACCGTCTCTATAACCCTGCTGATCCTCTCGCAGTTCCTTCATCTATGCTAATGGACTGTCCATACGGCGTCGTTCCCACTTTTTAG
Protein sequence

>MS.gene035678.t1

MGIERGGLKSFRSGWSVPPKLCDSCKLTPAALFCRSDSAFLCINCDSTIHSANKLSSRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFFDSAESVVKSSTAAAAAAASFNFVVPTDDGYGQDDAEAAAWLIPNPNFGSKLNETQDIKTREMFFSDMDPFLDFDYSNNFQNNINCSNAMNDSVVPVQTKPTPARMMNHNSEGGVNSNQGVVQGATQLCGMDREARVMRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVDRLYNPADPLAVPSSMLMDCPYGVVPTF