AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036038

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036038.t1 MTR_1g069570 96.306 758 28 0 1 758 1 758 0.0 1524
MS.gene036038.t1 MTR_1g069570 96.160 677 26 0 1 677 1 677 0.0 1350
MS.gene036038.t1 MTR_7g098390 51.276 784 278 21 5 757 3 713 0.0 655
MS.gene036038.t1 MTR_1g080340 59.639 332 129 5 418 746 257 586 1.96e-144 437
MS.gene036038.t1 MTR_1g080340 27.206 272 143 11 6 255 4 242 5.14e-12 69.7
MS.gene036038.t1 MTR_8g106570 50.698 215 82 6 418 629 106 299 2.73e-62 211
MS.gene036038.t1 MTR_1g064770 74.286 70 18 0 553 622 22 91 7.50e-34 125
MS.gene036038.t1 MTR_5g013420 30.303 330 160 11 428 741 809 1084 3.90e-32 134
MS.gene036038.t1 MTR_5g013420 30.303 330 160 11 428 741 809 1084 3.93e-32 134
MS.gene036038.t1 MTR_7g052480 29.118 340 157 13 430 742 270 552 1.09e-31 130
MS.gene036038.t1 MTR_7g088370 29.909 331 151 10 430 743 436 702 2.37e-30 128
MS.gene036038.t1 MTR_3g011440 28.402 338 170 10 428 743 374 661 1.97e-29 125
MS.gene036038.t1 MTR_8g078505 37.158 183 103 5 561 741 361 533 2.13e-28 120
MS.gene036038.t1 MTR_8g042750 27.976 336 173 10 428 744 401 686 6.10e-28 120
MS.gene036038.t1 MTR_4g010830 29.254 335 157 14 428 741 700 975 6.64e-27 118
MS.gene036038.t1 MTR_8g078490 36.413 184 110 4 561 743 1073 1250 4.16e-26 115
MS.gene036038.t1 MTR_7g084090 34.615 208 107 5 559 742 551 753 1.34e-25 113
MS.gene036038.t1 MTR_5g018850 36.413 184 108 6 561 742 1327 1503 4.39e-25 112
MS.gene036038.t1 MTR_4g132610 37.234 188 101 7 561 742 867 1043 1.32e-24 110
MS.gene036038.t1 MTR_6g061200 28.895 353 184 12 395 742 371 661 6.49e-24 107
MS.gene036038.t1 MTR_6g061270 35.071 211 102 7 559 742 488 690 8.75e-24 107
MS.gene036038.t1 MTR_4g010550 28.283 297 152 8 449 741 220 459 2.89e-23 104
MS.gene036038.t1 MTR_1g048950 29.560 318 151 11 428 741 280 528 3.57e-21 98.6
MS.gene036038.t1 MTR_8g070070 26.688 311 148 12 430 720 507 757 1.95e-20 97.1
MS.gene036038.t1 MTR_8g070075 25.402 311 152 11 430 720 500 750 2.62e-19 93.2
MS.gene036038.t1 MTR_1g035420 25.079 315 156 11 430 724 396 650 4.01e-18 89.4
MS.gene036038.t1 MTR_6g027690 32.500 160 102 3 563 719 241 397 5.66e-18 87.4
MS.gene036038.t1 MTR_6g044690 29.545 176 109 4 559 721 392 565 1.12e-17 87.8
MS.gene036038.t1 MTR_6g043960 29.545 176 109 4 559 721 310 483 3.63e-17 85.5
MS.gene036038.t1 MTR_3g088625 30.732 205 101 9 548 742 1182 1355 6.74e-17 86.3
MS.gene036038.t1 MTR_3g088625 30.732 205 101 9 548 742 1288 1461 6.87e-17 86.3
MS.gene036038.t1 MTR_2g054460 28.736 174 109 4 561 721 294 465 6.82e-16 81.6
MS.gene036038.t1 MTR_7g445600 33.333 135 63 3 584 718 248 355 5.06e-15 77.8
MS.gene036038.t1 MTR_7g445710 30.332 211 104 8 568 741 334 538 8.56e-15 78.6
MS.gene036038.t1 MTR_1g098370 29.412 238 122 10 511 741 35 233 3.35e-14 76.3
MS.gene036038.t1 MTR_7g450730 31.148 183 113 6 568 741 322 500 5.16e-14 75.9
MS.gene036038.t1 MTR_7g445530 30.811 185 88 7 568 718 334 512 1.07e-12 71.6
MS.gene036038.t1 MTR_1g098000 28.492 179 96 6 569 741 78 230 1.81e-12 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036038.t1 AT5G43990 40.102 788 348 21 5 749 3 709 1.17e-166 498
MS.gene036038.t1 AT5G43990 40.102 788 348 21 5 749 3 709 1.17e-166 498
MS.gene036038.t1 AT5G43990 40.102 788 348 21 5 749 3 709 1.17e-166 498
MS.gene036038.t1 AT5G43990 40.102 788 348 21 5 749 3 709 1.17e-166 498
MS.gene036038.t1 AT5G43990 40.304 789 345 22 5 749 26 732 2.23e-166 498
MS.gene036038.t1 AT5G43990 40.304 789 345 22 5 749 26 732 2.23e-166 498
MS.gene036038.t1 AT5G43990 40.415 772 348 20 5 749 26 712 1.64e-163 490
MS.gene036038.t1 AT5G43990 40.415 772 348 20 5 749 26 712 1.64e-163 490
MS.gene036038.t1 AT5G43990 40.208 771 351 19 5 749 3 689 1.86e-163 489
MS.gene036038.t1 AT5G43990 40.208 771 351 19 5 749 3 689 1.86e-163 489
MS.gene036038.t1 AT5G43990 40.208 771 351 19 5 749 3 689 1.86e-163 489
MS.gene036038.t1 AT5G43990 40.208 771 351 19 5 749 3 689 1.86e-163 489
MS.gene036038.t1 AT5G43990 39.411 713 324 19 63 749 10 640 8.09e-147 444
MS.gene036038.t1 AT5G43990 39.411 713 324 19 63 749 10 640 8.09e-147 444
MS.gene036038.t1 AT5G43990 39.411 713 324 19 63 749 10 640 8.09e-147 444
MS.gene036038.t1 AT5G43990 39.411 713 324 19 63 749 10 640 8.09e-147 444
MS.gene036038.t1 AT5G43990 39.511 696 327 17 63 749 10 620 4.83e-144 437
MS.gene036038.t1 AT3G04380 52.381 357 163 7 393 745 81 434 1.61e-126 385
MS.gene036038.t1 AT3G04380 53.314 347 155 7 403 745 102 445 3.52e-126 385
MS.gene036038.t1 AT3G04380 52.381 357 163 7 393 745 81 434 3.52e-126 385
MS.gene036038.t1 AT3G04380 53.314 347 155 7 403 745 118 461 3.77e-126 385
MS.gene036038.t1 AT3G04380 52.381 357 163 7 393 745 65 418 5.50e-126 384
MS.gene036038.t1 AT3G04380 53.314 347 155 7 403 745 118 461 7.03e-126 385
MS.gene036038.t1 AT1G04050 54.416 351 150 6 406 752 281 625 9.55e-126 389
MS.gene036038.t1 AT1G04050 32.558 172 94 7 228 380 176 344 2.83e-12 70.5
MS.gene036038.t1 AT1G04050 54.416 351 150 6 406 752 385 729 4.28e-125 391
MS.gene036038.t1 AT1G04050 32.558 172 94 7 228 380 280 448 2.38e-12 70.9
MS.gene036038.t1 AT1G04050 54.416 351 150 6 406 752 385 729 4.28e-125 391
MS.gene036038.t1 AT1G04050 32.558 172 94 7 228 380 280 448 2.38e-12 70.9
MS.gene036038.t1 AT2G23740 38.947 190 100 6 562 744 1193 1373 2.91e-28 122
MS.gene036038.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 3.26e-28 122
MS.gene036038.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 3.26e-28 122
MS.gene036038.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 3.26e-28 122
MS.gene036038.t1 AT1G73100 30.816 331 160 13 430 742 386 665 9.34e-28 120
MS.gene036038.t1 AT2G35160 29.206 315 152 11 430 741 543 789 2.57e-26 115
MS.gene036038.t1 AT2G35160 29.206 315 152 11 430 741 543 789 2.57e-26 115
MS.gene036038.t1 AT2G35160 29.206 315 152 11 430 741 543 789 2.57e-26 115
MS.gene036038.t1 AT2G35160 29.206 315 152 11 430 741 543 789 2.57e-26 115
MS.gene036038.t1 AT2G35160 29.206 315 152 11 430 741 507 753 2.72e-26 115
MS.gene036038.t1 AT2G22740 28.267 329 169 10 430 742 509 786 2.46e-25 112
MS.gene036038.t1 AT2G22740 28.267 329 169 10 430 742 509 786 2.46e-25 112
MS.gene036038.t1 AT5G04940 27.795 331 169 12 430 742 388 666 2.65e-24 108
MS.gene036038.t1 AT5G04940 27.795 331 169 12 430 742 388 666 2.65e-24 108
MS.gene036038.t1 AT3G03750 34.392 189 101 8 564 741 169 345 4.04e-22 99.4
MS.gene036038.t1 AT1G17770 32.836 201 117 7 558 742 491 689 9.66e-22 100
MS.gene036038.t1 AT2G23740 43.220 118 63 3 562 677 1200 1315 1.19e-20 98.2
MS.gene036038.t1 AT2G23740 43.220 118 63 3 562 677 1200 1315 1.19e-20 98.2
MS.gene036038.t1 AT4G13460 26.101 318 160 13 421 720 378 638 2.43e-18 90.1
MS.gene036038.t1 AT4G13460 26.101 318 160 13 421 720 378 638 2.43e-18 90.1
MS.gene036038.t1 AT2G33290 25.484 310 154 11 430 720 388 639 3.96e-16 83.2
MS.gene036038.t1 AT2G33290 25.484 310 154 11 430 720 388 639 3.96e-16 83.2
MS.gene036038.t1 AT2G33290 25.484 310 154 11 430 720 388 639 3.96e-16 83.2
MS.gene036038.t1 AT2G33290 25.484 310 154 11 430 720 388 639 3.96e-16 83.2
MS.gene036038.t1 AT2G24740 29.787 188 114 6 571 742 566 751 8.60e-15 79.0
MS.gene036038.t1 AT1G77300 28.767 219 110 11 535 742 980 1163 1.73e-14 78.6
MS.gene036038.t1 AT1G77300 28.767 219 110 11 535 742 980 1163 2.43e-14 77.8
MS.gene036038.t1 AT1G76710 28.492 179 96 6 569 741 72 224 2.88e-14 76.6
MS.gene036038.t1 AT1G76710 28.492 179 96 6 569 741 72 224 2.88e-14 76.6
MS.gene036038.t1 AT1G76710 28.492 179 96 6 569 741 72 224 4.37e-14 76.3
MS.gene036038.t1 AT1G76710 28.492 179 96 6 569 741 72 224 4.77e-14 75.9
MS.gene036038.t1 AT3G03750 28.947 190 94 7 564 741 169 329 2.39e-13 72.4

Find 177 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGCGCTGCTATGTTTC+TGG 0.156141 1.4:-56312384 None:intergenic
CCTCTCATGCAACTCTTTAA+TGG 0.157207 1.4:-56310805 None:intergenic
CTATGTTTCTGGTGGTAAAA+AGG 0.198580 1.4:-56312373 None:intergenic
GAGCTGCAGCTCAGCTCTTC+AGG 0.210314 1.4:+56309473 MS.gene036038:CDS
CATCTCGGAACACAAGATTT+TGG 0.213956 1.4:-56310106 None:intergenic
ACTACTAAACTGAGTGAATT+TGG 0.220484 1.4:-56309939 None:intergenic
AGAGAACTATAGAGCTTTAT+TGG 0.221245 1.4:+56308013 MS.gene036038:CDS
TCATCAACGGGCTCAGATTT+AGG 0.222684 1.4:-56308589 None:intergenic
ACATTTCTCTATCTCGTATT+GGG 0.243654 1.4:+56310138 MS.gene036038:CDS
AACATGAAATGTGCTGAAAA+TGG 0.265651 1.4:+56310828 MS.gene036038:CDS
TCTGGACACTCCATTTGAAT+TGG 0.315055 1.4:-56312213 None:intergenic
CCACTTCTTTACGTGTGTTA+TGG 0.320200 1.4:-56309398 None:intergenic
CTGCAGGCAATGACAGAGTT+TGG 0.324033 1.4:+56307912 MS.gene036038:CDS
GAATAGCGCCTTAAGCTTGA+TGG 0.331994 1.4:-56309318 None:intergenic
CTCTGATGGGCTGGTGAAAA+GGG 0.332393 1.4:-56309822 None:intergenic
AACATTTCTCTATCTCGTAT+TGG 0.338243 1.4:+56310137 MS.gene036038:CDS
TGTGCCTGTACAAATAAAAC+TGG 0.341653 1.4:+56310215 MS.gene036038:CDS
TTGAAAAGATTGAGATTAAG+AGG 0.343197 1.4:+56308349 MS.gene036038:CDS
CTCTTCAAGTGTCCTTTACA+TGG 0.346446 1.4:-56310383 None:intergenic
CATTGTGGGCAGTAAGGATT+TGG 0.349231 1.4:+56309728 MS.gene036038:CDS
TACAGCTCAAGGCCTAATTA+AGG 0.350606 1.4:+56310253 MS.gene036038:CDS
GTCAAAGAGTGATGGTTGTT+TGG 0.362693 1.4:+56310358 MS.gene036038:CDS
ACTAGGTCTGCGTTAATTGC+TGG 0.366002 1.4:+56313161 MS.gene036038:CDS
GAAAGTTTATTAAAGAATGT+TGG 0.367343 1.4:+56310405 MS.gene036038:CDS
CTGGACACTCCATTTGAATT+GGG 0.372240 1.4:-56312212 None:intergenic
TGCTTAGATGCAGCGTCCTT+TGG 0.374054 1.4:+56310921 MS.gene036038:CDS
ATGGTGTTTCTGCAGGATTA+TGG 0.382711 1.4:+56312763 MS.gene036038:intron
CACTCCGCATCCAGTAGAAC+TGG 0.383967 1.4:-56310864 None:intergenic
TGAGTAGGCATGCGGAAATC+TGG 0.394448 1.4:-56309498 None:intergenic
GCTCTGATGGGCTGGTGAAA+AGG 0.396124 1.4:-56309823 None:intergenic
ACCAGCCCATCAGAGCAGTT+TGG 0.397557 1.4:+56309830 MS.gene036038:CDS
GATGACACTGCGTTGTTTCG+AGG 0.400594 1.4:-56308466 None:intergenic
TGCAGGCAATGACAGAGTTT+GGG 0.400977 1.4:+56307913 MS.gene036038:CDS
TACTGGTTTCCGAGATGAAC+AGG 0.403963 1.4:+56309862 MS.gene036038:CDS
CAGATGTTCTGATGCAAACT+TGG 0.408144 1.4:+56312182 MS.gene036038:intron
AAGAGAATAATCAAATTTCA+TGG 0.413531 1.4:+56310033 MS.gene036038:CDS
GCATTTGTGTGTGAGTTTGC+TGG 0.417110 1.4:+56310771 MS.gene036038:CDS
CAGCGCATGAAGAGCTCACT+TGG 0.418578 1.4:+56312396 MS.gene036038:CDS
TCACACACAAATGCTCCTTT+TGG 0.419691 1.4:-56310762 None:intergenic
TCCAAACTGCTCTGATGGGC+TGG 0.425801 1.4:-56309831 None:intergenic
GCCATCAACCTCTGATTCCT+TGG 0.425867 1.4:-56309697 None:intergenic
ATCTACTTACCCAGTTCTAC+TGG 0.430711 1.4:+56310854 MS.gene036038:CDS
CGTCATCCAAACTGCTCTGA+TGG 0.431982 1.4:-56309836 None:intergenic
TGGAATAACATACAACTTGC+AGG 0.432287 1.4:+56310475 MS.gene036038:CDS
AGTCTACAGAAGATCGTATA+AGG 0.434173 1.4:+56309976 MS.gene036038:CDS
TCCTGAAGCAAAAGTGAAAC+GGG 0.434933 1.4:+56307938 MS.gene036038:CDS
GGTTGAAATCCCAATTCAAA+TGG 0.434936 1.4:+56312203 MS.gene036038:CDS
ATGGGGACTTCGTACCTTAG+AGG 0.440946 1.4:+56310734 MS.gene036038:CDS
ATGCAGAACCATCAAGCTTA+AGG 0.443752 1.4:+56309310 MS.gene036038:intron
CAAGCTTAAGGCGCTATTCA+AGG 0.444240 1.4:+56309322 MS.gene036038:CDS
AACATTTAACGGAGCTTCCT+CGG 0.446061 1.4:-56308311 None:intergenic
CAGTTTGGATGACGCTGTAC+TGG 0.449932 1.4:+56309845 MS.gene036038:CDS
GAGGACAGTTGTTCCTGTAT+AGG 0.451056 1.4:+56310164 MS.gene036038:CDS
ACGGGTTCTCACTCATCAAA+TGG 0.451201 1.4:+56309753 MS.gene036038:CDS
TCCTTACTGCCCACAATGGC+GGG 0.451219 1.4:-56309723 None:intergenic
TCATAATCTTCCTCATCAAC+GGG 0.455912 1.4:-56308601 None:intergenic
CAAACTCTGTCATTGCCTGC+AGG 0.457013 1.4:-56307911 None:intergenic
CTATGTGAGACTTCTTCAAC+GGG 0.457238 1.4:-56308405 None:intergenic
GATGGCACACCCGCCATTGT+GGG 0.460269 1.4:+56309714 MS.gene036038:CDS
AGCTGCAGCTCAGCTCTTCA+GGG 0.466371 1.4:+56309474 MS.gene036038:CDS
CAGTAAAAGCAATGCTGTTG+AGG 0.466634 1.4:-56310314 None:intergenic
TTGGATGCTATATTTGAAGA+AGG 0.467640 1.4:+56308032 MS.gene036038:CDS
CAAGATGCAACTTCCTATAC+AGG 0.475226 1.4:-56310177 None:intergenic
GGAAGAAGAGATGGAGGCCG+AGG 0.476544 1.4:+56308294 MS.gene036038:intron
TTTGGAGACACGGGATCCTC+CGG 0.478825 1.4:-56309921 None:intergenic
AGAACAACTTCTAAAGATGA+TGG 0.485289 1.4:+56309521 MS.gene036038:CDS
ACAGTTTGACAGGTTGATCA+TGG 0.487440 1.4:-56312801 None:intergenic
CGAGCAGATTCAACATTTAA+CGG 0.488022 1.4:-56308322 None:intergenic
ACCCGCCATTGTGGGCAGTA+AGG 0.490950 1.4:+56309722 MS.gene036038:CDS
ACATGATAGTAGTAACGATC+TGG 0.492019 1.4:-56312231 None:intergenic
TTTAGAAGTTGTTCTTGAGT+AGG 0.492209 1.4:-56309513 None:intergenic
ACGGGGAAGAAGCTGAGCTA+GGG 0.492408 1.4:-56308387 None:intergenic
TGTGATAGCCTCTTCAACTC+AGG 0.498432 1.4:+56309431 MS.gene036038:CDS
GAAGAAGTCTCACATAGAAA+AGG 0.499568 1.4:+56308411 MS.gene036038:CDS
TACTTCTCCCTGAGTTGAAG+AGG 0.500373 1.4:-56309439 None:intergenic
TTCCTGAAGCAAAAGTGAAA+CGG 0.501547 1.4:+56307937 MS.gene036038:CDS
GATGTTAGTGACCTTACAAA+AGG 0.503486 1.4:+56310008 MS.gene036038:CDS
TGCGAGATGCTAGTTATGAC+AGG 0.503811 1.4:+56308521 MS.gene036038:CDS
TGATGGCACACCCGCCATTG+TGG 0.514482 1.4:+56309713 MS.gene036038:CDS
ACATGAAATGTGCTGAAAAT+GGG 0.514519 1.4:+56310829 MS.gene036038:CDS
CTCATAATCTTCCTCATCAA+CGG 0.516381 1.4:-56308602 None:intergenic
GGCAGTAAGGATTTGGACAC+GGG 0.517393 1.4:+56309735 MS.gene036038:CDS
TTGCACTGGAACAGTTTGAC+AGG 0.517685 1.4:-56312811 None:intergenic
GAAAAGGACACAGCACTTGA+AGG 0.519631 1.4:+56308427 MS.gene036038:CDS
TCTATCTCGTATTGGGGCTG+AGG 0.521876 1.4:+56310145 MS.gene036038:CDS
TTGCTAGATTTATCAATCAC+AGG 0.526124 1.4:+56310949 MS.gene036038:CDS
TCACTCTTTGACCTTTCAAG+TGG 0.526254 1.4:-56310347 None:intergenic
AAACTCTGTCATTGCCTGCA+GGG 0.528224 1.4:-56307910 None:intergenic
AGTTCTACTGGATGCGGAGT+GGG 0.529585 1.4:+56310866 MS.gene036038:CDS
CACATCCGAAGGAAAAGGAT+GGG 0.533153 1.4:+56310716 MS.gene036038:CDS
AATGTGGCAGTAAGTTCTGC+AGG 0.533366 1.4:+56312833 MS.gene036038:CDS
ACTTACTGCCACATTTGCAC+TGG 0.535307 1.4:-56312825 None:intergenic
AACGGGGAAGAAGCTGAGCT+AGG 0.536976 1.4:-56308388 None:intergenic
ATCAATTGTCCTGTTCATCT+CGG 0.538244 1.4:-56309871 None:intergenic
GCAAAGATTGTCCACTTGAA+AGG 0.541466 1.4:+56310336 MS.gene036038:CDS
TAAGAAGCATGTGGTGATGC+AGG 0.543204 1.4:-56308553 None:intergenic
TGGGGTATGTAGTTGAAAGG+TGG 0.544895 1.4:-56310086 None:intergenic
TGCATTCTAACATCACTTTG+TGG 0.547428 1.4:-56309897 None:intergenic
TTACGTGTGTTATGGTGTGA+TGG 0.548330 1.4:-56309390 None:intergenic
CATTTCTCTATCTCGTATTG+GGG 0.549601 1.4:+56310139 MS.gene036038:CDS
ATCCTTACTGCCCACAATGG+CGG 0.550791 1.4:-56309724 None:intergenic
TCACATCCGAAGGAAAAGGA+TGG 0.551509 1.4:+56310715 MS.gene036038:CDS
TCTATGTGAGACTTCTTCAA+CGG 0.553756 1.4:-56308406 None:intergenic
AGGCGCTATTCAAGGAAGAA+TGG 0.557745 1.4:+56309330 MS.gene036038:CDS
GTCATCCAAACTGCTCTGAT+GGG 0.561314 1.4:-56309835 None:intergenic
AGCAATTAACGCAGACCTAG+TGG 0.561560 1.4:-56313159 None:intergenic
CCATTAAAGAGTTGCATGAG+AGG 0.561929 1.4:+56310805 MS.gene036038:CDS
TGAGCGGCGTCCCCTTGCAA+TGG 0.562017 1.4:+56308621 MS.gene036038:CDS
GGTATGTAGTTGAAAGGTGG+TGG 0.563966 1.4:-56310083 None:intergenic
GTTATGGTGTGATGGTGTCA+TGG 0.564381 1.4:-56309382 None:intergenic
AAGTGATGTTAGAATGCAGC+CGG 0.565115 1.4:+56309902 MS.gene036038:CDS
TTATACGATCTTCTGTAGAC+TGG 0.565319 1.4:-56309974 None:intergenic
ATATAACCAGGAAGAAGAGA+TGG 0.566148 1.4:+56308285 MS.gene036038:intron
AGAGAATAATCAAATTTCAT+GGG 0.566667 1.4:+56310034 MS.gene036038:CDS
AGTAAAAGCAATGCTGTTGA+GGG 0.566678 1.4:-56310313 None:intergenic
GTGATGGTGTCATGGAGACA+TGG 0.568469 1.4:-56309374 None:intergenic
ACCTTAGAGGAACTGCCAAA+AGG 0.569461 1.4:+56310747 MS.gene036038:CDS
TGTTGGAGCAAATGTGGCTG+TGG 0.569633 1.4:+56310422 MS.gene036038:CDS
AAATTTGCATATACAGCTCA+AGG 0.570666 1.4:+56310242 MS.gene036038:CDS
CAGTGTCATCTGATGTGAAT+GGG 0.571710 1.4:+56308479 MS.gene036038:CDS
TCCAAGGAATCAGAGGTTGA+TGG 0.572508 1.4:+56309696 MS.gene036038:CDS
TCTGCCTTGGTTTCACCTCG+AGG 0.574171 1.4:+56309798 MS.gene036038:CDS
GTGCCTGTACAAATAAAACT+GGG 0.575512 1.4:+56310216 MS.gene036038:CDS
ATCAAGCATAGATGTGTCCA+AGG 0.576306 1.4:+56309680 MS.gene036038:CDS
TAAATCTGAGCCCGTTGATG+AGG 0.579697 1.4:+56308591 MS.gene036038:CDS
TCTGATGGGCTGGTGAAAAG+GGG 0.580258 1.4:-56309821 None:intergenic
CCATAACACACGTAAAGAAG+TGG 0.582122 1.4:+56309398 MS.gene036038:CDS
AAATGTTAACAGAAGCATCT+CGG 0.583016 1.4:-56310121 None:intergenic
GTGGGATTCAACATTTGTGA+AGG 0.586586 1.4:+56310884 MS.gene036038:CDS
CTGAGTGAATTTGGAGACAC+GGG 0.587085 1.4:-56309930 None:intergenic
AAATCTAGCAATGTTGCCAA+AGG 0.600969 1.4:-56310937 None:intergenic
GTGATAGCCTCTTCAACTCA+GGG 0.605753 1.4:+56309432 MS.gene036038:CDS
GGGCAGTAAGGATTTGGACA+CGG 0.606855 1.4:+56309734 MS.gene036038:CDS
TCAAACGATAAATCACAAGA+AGG 0.607809 1.4:+56309645 MS.gene036038:CDS
GTCATAACTAGCATCTCGCA+TGG 0.608733 1.4:-56308518 None:intergenic
TTACCCAGTTCTACTGGATG+CGG 0.610406 1.4:+56310860 MS.gene036038:CDS
AGATATATGTGATTGCATGT+TGG 0.610959 1.4:+56309608 MS.gene036038:CDS
CGGGGAAGAAGCTGAGCTAG+GGG 0.611782 1.4:-56308386 None:intergenic
CTTGAAAGGTCAAAGAGTGA+TGG 0.617940 1.4:+56310350 MS.gene036038:CDS
GCAGTGTCATCTGATGTGAA+TGG 0.620539 1.4:+56308478 MS.gene036038:CDS
TCATAACTAGCATCTCGCAT+GGG 0.621862 1.4:-56308517 None:intergenic
AGATGTGTCCAAGGAATCAG+AGG 0.622003 1.4:+56309689 MS.gene036038:CDS
ACATCCGAAGGAAAAGGATG+GGG 0.623345 1.4:+56310717 MS.gene036038:CDS
GGTTGTTTGGAACCATGTAA+AGG 0.624624 1.4:+56310371 MS.gene036038:CDS
CAGTTCTACTGGATGCGGAG+TGG 0.627446 1.4:+56310865 MS.gene036038:CDS
AAACTGTTCCAGTGCAAATG+TGG 0.628078 1.4:+56312817 MS.gene036038:CDS
CAAATCCTTACTGCCCACAA+TGG 0.629154 1.4:-56309727 None:intergenic
GCTGGTGAAAAGGGGCCTCG+AGG 0.629263 1.4:-56309813 None:intergenic
AGTTGTATGTTATTCCACGC+TGG 0.629403 1.4:-56310469 None:intergenic
AAAGAATGTTGGAGCAAATG+TGG 0.629844 1.4:+56310416 MS.gene036038:CDS
GCGAGATGCTAGTTATGACA+GGG 0.630984 1.4:+56308522 MS.gene036038:CDS
ATGCGCTGCTATGTTTCTGG+TGG 0.632146 1.4:-56312381 None:intergenic
AACGGGCTCAGATTTAGGTA+CGG 0.633960 1.4:-56308584 None:intergenic
TCTTCTGTAGACTGGTGATG+TGG 0.636889 1.4:-56309966 None:intergenic
ACTGATTATAAATGGCGCCA+AGG 0.643115 1.4:+56307865 None:intergenic
GTTGTTCTTGAGTAGGCATG+CGG 0.647576 1.4:-56309506 None:intergenic
AGCGCATGAAGAGCTCACTT+GGG 0.648600 1.4:+56312397 MS.gene036038:CDS
AATGGTGTTACTGAAAAGCA+AGG 0.651736 1.4:+56309348 MS.gene036038:CDS
TGTCATCTGATGTGAATGGG+AGG 0.652442 1.4:+56308482 MS.gene036038:CDS
TGATGGTGTCATGGAGACAT+GGG 0.657309 1.4:-56309373 None:intergenic
ACTGAGTGAATTTGGAGACA+CGG 0.658366 1.4:-56309931 None:intergenic
GTCAATTCATAAGAAGCATG+TGG 0.660777 1.4:-56308562 None:intergenic
ACTCCGCATCCAGTAGAACT+GGG 0.662392 1.4:-56310863 None:intergenic
GCCTGTACAAATAAAACTGG+GGG 0.662560 1.4:+56310218 MS.gene036038:CDS
TGCCTGTACAAATAAAACTG+GGG 0.666048 1.4:+56310217 MS.gene036038:CDS
ACAACTTCTAAAGATGATGG+AGG 0.666072 1.4:+56309524 MS.gene036038:CDS
TAACCAGGAAGAAGAGATGG+AGG 0.670725 1.4:+56308288 MS.gene036038:intron
GTTGGAGCAAATGTGGCTGT+GGG 0.672821 1.4:+56310423 MS.gene036038:CDS
TGATGTTAGAATGCAGCCGG+AGG 0.679721 1.4:+56309905 MS.gene036038:CDS
TGTGGCTGTGGGAAACAATG+TGG 0.681976 1.4:+56310434 MS.gene036038:CDS
GTCATCTGATGTGAATGGGA+GGG 0.682522 1.4:+56308483 MS.gene036038:CDS
AAGGACACAGCACTTGAAGG+CGG 0.696062 1.4:+56308430 MS.gene036038:CDS
GGAAATCGCGTTATCCAGCG+TGG 0.696912 1.4:+56310455 MS.gene036038:CDS
GGGGCCTCGAGGTGAAACCA+AGG 0.711820 1.4:-56309802 None:intergenic
CGAGATGCTAGTTATGACAG+GGG 0.714402 1.4:+56308523 MS.gene036038:CDS
TTGATGAGGAAGATTATGAG+CGG 0.719615 1.4:+56308605 MS.gene036038:CDS
TATGTGAGACTTCTTCAACG+GGG 0.806237 1.4:-56308404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAATTTTTAAATTT+AGG + chr1.4:56310686-56310705 MS.gene036038:intron 0.0%
!! AAAAGAGTAAAAATTAAATA+CGG - chr1.4:56313129-56313148 None:intergenic 10.0%
!! AAAGAAAAAAAAAAGATATT+TGG + chr1.4:56311286-56311305 MS.gene036038:intron 10.0%
!! TAAAAATTATGAATCAATAT+TGG - chr1.4:56310547-56310566 None:intergenic 10.0%
!!! AAAACATTTTAAAAATATAC+CGG - chr1.4:56310660-56310679 None:intergenic 10.0%
!!! GTAATACATATTTTAATTTA+GGG - chr1.4:56311680-56311699 None:intergenic 10.0%
!!! TGTAATACATATTTTAATTT+AGG - chr1.4:56311681-56311700 None:intergenic 10.0%
!! AATTGCTCATTATAAATTAA+AGG + chr1.4:56311475-56311494 MS.gene036038:intron 15.0%
!! ATAACATTATACTAATACAT+AGG - chr1.4:56310634-56310653 None:intergenic 15.0%
!! ATGTATTATTGTATTATTTG+TGG + chr1.4:56308849-56308868 MS.gene036038:intron 15.0%
!! ATTGCTCATTATAAATTAAA+GGG + chr1.4:56311476-56311495 MS.gene036038:intron 15.0%
!! TGTTGAAAAAGAAAAATAAT+TGG - chr1.4:56309214-56309233 None:intergenic 15.0%
!! TTAAAATAATTGGTATTAAG+TGG - chr1.4:56311787-56311806 None:intergenic 15.0%
!!! AAAATTTTATACAATATAGG+AGG - chr1.4:56312476-56312495 None:intergenic 15.0%
!!! AAACATTTTAAAAATATACC+GGG - chr1.4:56310659-56310678 None:intergenic 15.0%
!!! AAACCCAATTTTATAAAAAT+GGG - chr1.4:56311924-56311943 None:intergenic 15.0%
!!! ATAAAATTTTCACTTCTTTA+CGG + chr1.4:56312486-56312505 MS.gene036038:intron 15.0%
!!! ATTCCCATTTTTATAAAATT+GGG + chr1.4:56311918-56311937 MS.gene036038:intron 15.0%
!!! GTGAAAATTTTATACAATAT+AGG - chr1.4:56312479-56312498 None:intergenic 15.0%
!!! TAAACCCAATTTTATAAAAA+TGG - chr1.4:56311925-56311944 None:intergenic 15.0%
!!! TATTCCCATTTTTATAAAAT+TGG + chr1.4:56311917-56311936 MS.gene036038:intron 15.0%
!! AAAAAAAAAAGATATTTGGC+TGG + chr1.4:56311290-56311309 MS.gene036038:intron 20.0%
!! AAAAAAAAAGATATTTGGCT+GGG + chr1.4:56311291-56311310 MS.gene036038:intron 20.0%
!! AAGAGAATAATCAAATTTCA+TGG + chr1.4:56310033-56310052 MS.gene036038:CDS 20.0%
!! AGAGAATAATCAAATTTCAT+GGG + chr1.4:56310034-56310053 MS.gene036038:CDS 20.0%
!! ATTATTGTATTATTTGTGGA+TGG + chr1.4:56308853-56308872 MS.gene036038:intron 20.0%
!! GAAAGTTTATTAAAGAATGT+TGG + chr1.4:56310405-56310424 MS.gene036038:CDS 20.0%
!! GTTCAAACGATTAAAATAAT+TGG - chr1.4:56311797-56311816 None:intergenic 20.0%
!!! AACATTTTAAAAATATACCG+GGG - chr1.4:56310658-56310677 None:intergenic 20.0%
!!! ACTTATTTTCTAGTTTTTCA+TGG + chr1.4:56312582-56312601 MS.gene036038:intron 20.0%
!!! AGAAAAATTTCTTTTCTCTT+CGG - chr1.4:56311434-56311453 None:intergenic 20.0%
!!! AGTTTTTATCAAACAACTTA+AGG - chr1.4:56307977-56307996 None:intergenic 20.0%
!!! GTAAGTTTTGTTATGTAATA+TGG + chr1.4:56312419-56312438 MS.gene036038:intron 20.0%
!!! TAAACAGAAGCTTATTTTTA+TGG + chr1.4:56312744-56312763 MS.gene036038:intron 20.0%
!!! TAACATTCATAATTTTCTGT+TGG + chr1.4:56308197-56308216 MS.gene036038:intron 20.0%
!!! TGAATGTTTTTTGGTTATTT+AGG + chr1.4:56312134-56312153 MS.gene036038:intron 20.0%
!!! TTAAGTTGTTTGATAAAAAC+TGG + chr1.4:56307976-56307995 MS.gene036038:CDS 20.0%
!!! TTTCCTTAGTTTGAATTTTA+GGG - chr1.4:56311010-56311029 None:intergenic 20.0%
!!! TTTTCCTTAGTTTGAATTTT+AGG - chr1.4:56311011-56311030 None:intergenic 20.0%
! AAGAAATGCTTATGTACTTT+GGG + chr1.4:56312615-56312634 MS.gene036038:intron 25.0%
! AAGGATATTTAAACAGTTTG+GGG - chr1.4:56311845-56311864 None:intergenic 25.0%
! ACAAGTTAAGGAACTTAAAA+TGG + chr1.4:56311524-56311543 MS.gene036038:intron 25.0%
! ACAATAACTTGAGTTTAATG+TGG + chr1.4:56311361-56311380 MS.gene036038:intron 25.0%
! ACGTTATTAAACAATCCAAA+AGG - chr1.4:56313021-56313040 None:intergenic 25.0%
! AGAAACTCATAAATCAGTAA+AGG - chr1.4:56309116-56309135 None:intergenic 25.0%
! AGTAAACTACAAAAATGAAC+AGG - chr1.4:56312683-56312702 None:intergenic 25.0%
! ATTAGTATAATGTTATTCCC+CGG + chr1.4:56310638-56310657 MS.gene036038:intron 25.0%
! CAAGGATATTTAAACAGTTT+GGG - chr1.4:56311846-56311865 None:intergenic 25.0%
! CAGTTGGGATAATTTATTTA+TGG + chr1.4:56312555-56312574 MS.gene036038:intron 25.0%
! CCAAAAATTCTTCCTTAATT+AGG - chr1.4:56310268-56310287 None:intergenic 25.0%
! GTTAAGAAGATAAATGTAGA+AGG - chr1.4:56311628-56311647 None:intergenic 25.0%
! TAAGAAATGCTTATGTACTT+TGG + chr1.4:56312614-56312633 MS.gene036038:intron 25.0%
! TATACTAATACATAGGAACT+TGG - chr1.4:56310627-56310646 None:intergenic 25.0%
! TCAAGGATATTTAAACAGTT+TGG - chr1.4:56311847-56311866 None:intergenic 25.0%
! TTGAAAAGATTGAGATTAAG+AGG + chr1.4:56308349-56308368 MS.gene036038:CDS 25.0%
! TTTGACATCTTAGTTGTAAT+TGG + chr1.4:56308692-56308711 MS.gene036038:intron 25.0%
!! AAAATGTCTTTGTTTACTAG+TGG - chr1.4:56310522-56310541 None:intergenic 25.0%
!! AATTTTTACTCTTTTGATGC+AGG + chr1.4:56313134-56313153 MS.gene036038:intron 25.0%
!! ATTTACTTTGTTGTATCACT+TGG + chr1.4:56312980-56312999 MS.gene036038:intron 25.0%
!! ATTTTTCCGACAGAAAAATT+TGG - chr1.4:56309582-56309601 None:intergenic 25.0%
!! CCTAATTAAGGAAGAATTTT+TGG + chr1.4:56310265-56310284 MS.gene036038:CDS 25.0%
!! CTTAATCTCAATCTTTTCAA+AGG - chr1.4:56308349-56308368 None:intergenic 25.0%
!! TAAATGTAGAAGGTTTTTCT+TGG - chr1.4:56311618-56311637 None:intergenic 25.0%
!! TTATTCTTCTTTTCAAACCA+TGG + chr1.4:56308773-56308792 MS.gene036038:intron 25.0%
!! TTTACTTTGTTGTATCACTT+GGG + chr1.4:56312981-56313000 MS.gene036038:intron 25.0%
!! TTTTTCCGACAGAAAAATTT+GGG - chr1.4:56309581-56309600 None:intergenic 25.0%
!!! ATTGTTGGATTTTATTTGAC+AGG + chr1.4:56308134-56308153 MS.gene036038:intron 25.0%
!!! GCAAATGTTTGAATGTTTTT+TGG + chr1.4:56312125-56312144 MS.gene036038:intron 25.0%
AAAAAATGGAGGACATAGTT+GGG + chr1.4:56311113-56311132 MS.gene036038:intron 30.0%
AAATAATTGGTCAGATTCAG+AGG - chr1.4:56309201-56309220 None:intergenic 30.0%
AAATTTGCATATACAGCTCA+AGG + chr1.4:56310242-56310261 MS.gene036038:CDS 30.0%
AACAAACGATTAACACAGTT+GGG + chr1.4:56312540-56312559 MS.gene036038:intron 30.0%
AACATGAAATGTGCTGAAAA+TGG + chr1.4:56310828-56310847 MS.gene036038:CDS 30.0%
AACATGATGCAATTATGCAA+TGG - chr1.4:56309021-56309040 None:intergenic 30.0%
AACATTTCTCTATCTCGTAT+TGG + chr1.4:56310137-56310156 MS.gene036038:CDS 30.0%
ACAATTGATATCCGGAAAAA+TGG + chr1.4:56311051-56311070 MS.gene036038:intron 30.0%
ACATGAAATGTGCTGAAAAT+GGG + chr1.4:56310829-56310848 MS.gene036038:CDS 30.0%
ACATTTAGCAAAACCATAGT+TGG - chr1.4:56308833-56308852 None:intergenic 30.0%
ACATTTCTCTATCTCGTATT+GGG + chr1.4:56310138-56310157 MS.gene036038:CDS 30.0%
ACTAAGGAAAACAGAGAAAT+AGG + chr1.4:56311020-56311039 MS.gene036038:intron 30.0%
ACTACTAAACTGAGTGAATT+TGG - chr1.4:56309942-56309961 None:intergenic 30.0%
AGATATATGTGATTGCATGT+TGG + chr1.4:56309608-56309627 MS.gene036038:CDS 30.0%
AGGACATAACAATTGATATC+CGG + chr1.4:56311043-56311062 MS.gene036038:intron 30.0%
AGGCAGAAAAAGAATTAACT+TGG - chr1.4:56309785-56309804 None:intergenic 30.0%
AGTTTGCATAAGATACTCTA+TGG + chr1.4:56309140-56309159 MS.gene036038:intron 30.0%
ATTTCTCACCTATTGTTTCA+AGG + chr1.4:56310978-56310997 MS.gene036038:intron 30.0%
CAATTGATATCCGGAAAAAT+GGG + chr1.4:56311052-56311071 MS.gene036038:intron 30.0%
CAGATTAGTATAACAACAGA+AGG - chr1.4:56312301-56312320 None:intergenic 30.0%
CATATAGTAAGGTTATACTG+AGG + chr1.4:56312650-56312669 MS.gene036038:intron 30.0%
CATTTAGCAAAACCATAGTT+GGG - chr1.4:56308832-56308851 None:intergenic 30.0%
CTCAGTATAACCTTACTATA+TGG - chr1.4:56312652-56312671 None:intergenic 30.0%
TATGATTAAATATTCCTCCC+TGG - chr1.4:56311249-56311268 None:intergenic 30.0%
TCAAACGATAAATCACAAGA+AGG + chr1.4:56309645-56309664 MS.gene036038:CDS 30.0%
TGCAAACTTACTTCTATTGT+TGG + chr1.4:56308119-56308138 MS.gene036038:intron 30.0%
TTACATATGAGCATAGTTTG+AGG - chr1.4:56311757-56311776 None:intergenic 30.0%
TTAGTTGTAATTGGCATGTT+TGG + chr1.4:56308701-56308720 MS.gene036038:intron 30.0%
TTATATGAGATTGCCAACAT+AGG + chr1.4:56311214-56311233 MS.gene036038:intron 30.0%
TTGCTAGATTTATCAATCAC+AGG + chr1.4:56310949-56310968 MS.gene036038:CDS 30.0%
TTGGATGCTATATTTGAAGA+AGG + chr1.4:56308032-56308051 MS.gene036038:CDS 30.0%
TTTAGAAGTTGTTCTTGAGT+AGG - chr1.4:56309516-56309535 None:intergenic 30.0%
! AAAAGTGCAACCAAGTAATA+GGG - chr1.4:56311140-56311159 None:intergenic 30.0%
! AGAACAACTTCTAAAGATGA+TGG + chr1.4:56309521-56309540 MS.gene036038:CDS 30.0%
! AGAGAACTATAGAGCTTTAT+TGG + chr1.4:56308013-56308032 MS.gene036038:CDS 30.0%
! AGTTAATTCTTTTTCTGCCT+TGG + chr1.4:56309785-56309804 MS.gene036038:CDS 30.0%
! ATATTTAAACAGTTTGGGGT+AGG - chr1.4:56311841-56311860 None:intergenic 30.0%
! CTTTTCAGACTTCAAAGATT+AGG - chr1.4:56312266-56312285 None:intergenic 30.0%
! TATTCTCTTCTCCTTTTGTA+AGG - chr1.4:56310022-56310041 None:intergenic 30.0%
! TATTTAAACAGTTTGGGGTA+GGG - chr1.4:56311840-56311859 None:intergenic 30.0%
! TGGATTGATAGTTGTTGAAA+AGG + chr1.4:56312915-56312934 MS.gene036038:intron 30.0%
! TTCTGCATTTTCATATAACC+AGG + chr1.4:56308273-56308292 MS.gene036038:intron 30.0%
! TTGCAAAACATCAAAAGCAT+TGG - chr1.4:56312341-56312360 None:intergenic 30.0%
!! AAATGTTAACAGAAGCATCT+CGG - chr1.4:56310124-56310143 None:intergenic 30.0%
!! TATGTTTCTGGTGGTAAAAA+GGG - chr1.4:56312375-56312394 None:intergenic 30.0%
!! TATTTTTATGGTGTTTCTGC+AGG + chr1.4:56312756-56312775 MS.gene036038:intron 30.0%
!! TTGTTTTTCTTTTGTGGTTC+TGG - chr1.4:56308162-56308181 None:intergenic 30.0%
!!! ACTCTCTTGTTTTTCTTTTG+TGG - chr1.4:56308168-56308187 None:intergenic 30.0%
!!! ATGAAATTTTCTAGCTCACA+TGG + chr1.4:56312448-56312467 MS.gene036038:intron 30.0%
!!! TGAAATTTTCTAGCTCACAT+GGG + chr1.4:56312449-56312468 MS.gene036038:intron 30.0%
AAAATGGGAGAAGACAAAGT+AGG + chr1.4:56311067-56311086 MS.gene036038:intron 35.0%
AAACATTCAAACATTTGCCG+AGG - chr1.4:56312123-56312142 None:intergenic 35.0%
AAAGAATGTTGGAGCAAATG+TGG + chr1.4:56310416-56310435 MS.gene036038:CDS 35.0%
AAATCTAGCAATGTTGCCAA+AGG - chr1.4:56310940-56310959 None:intergenic 35.0%
AAATGCTTATGTACTTTGGG+TGG + chr1.4:56312618-56312637 MS.gene036038:intron 35.0%
AAGGAAAACAGAGAAATAGG+AGG + chr1.4:56311023-56311042 MS.gene036038:intron 35.0%
AAGGAAGGTAAATCAGATCA+AGG - chr1.4:56311864-56311883 None:intergenic 35.0%
ACATGATAGTAGTAACGATC+TGG - chr1.4:56312234-56312253 None:intergenic 35.0%
AGGACATAACCATTGATATC+CGG + chr1.4:56311090-56311109 MS.gene036038:intron 35.0%
AGTAAAAGCAATGCTGTTGA+GGG - chr1.4:56310316-56310335 None:intergenic 35.0%
AGTCTACAGAAGATCGTATA+AGG + chr1.4:56309976-56309995 MS.gene036038:CDS 35.0%
ATAGTAAGGTTATACTGAGG+AGG + chr1.4:56312653-56312672 MS.gene036038:intron 35.0%
ATAGTTCATTGAATACCAGG+GGG - chr1.4:56308649-56308668 None:intergenic 35.0%
ATATAACCAGGAAGAAGAGA+TGG + chr1.4:56308285-56308304 MS.gene036038:intron 35.0%
ATATGAAGCGATCAAACAGT+AGG + chr1.4:56312857-56312876 MS.gene036038:intron 35.0%
ATCAATTGTCCTGTTCATCT+CGG - chr1.4:56309874-56309893 None:intergenic 35.0%
ATGTCAAGTTATGTATCTGC+AGG + chr1.4:56310600-56310619 MS.gene036038:intron 35.0%
CATTTCTCTATCTCGTATTG+GGG + chr1.4:56310139-56310158 MS.gene036038:CDS 35.0%
CCATTGATATCCGGAAAAAA+TGG + chr1.4:56311099-56311118 MS.gene036038:intron 35.0%
CGAAAGAACGAAATTGAAAG+TGG - chr1.4:56309245-56309264 None:intergenic 35.0%
CGAGCAGATTCAACATTTAA+CGG - chr1.4:56308325-56308344 None:intergenic 35.0%
CGGAAATCATGCATCAATAA+TGG - chr1.4:56313109-56313128 None:intergenic 35.0%
CTCATAATCTTCCTCATCAA+CGG - chr1.4:56308605-56308624 None:intergenic 35.0%
CTTATAGCTTATGCTCTGAT+TGG + chr1.4:56313042-56313061 MS.gene036038:intron 35.0%
CTTCTTAACTTATGCCCTAA+GGG + chr1.4:56311639-56311658 MS.gene036038:intron 35.0%
GAAAAAATGGAGGACATAGT+TGG + chr1.4:56311112-56311131 MS.gene036038:intron 35.0%
GAACAAACGATTAACACAGT+TGG + chr1.4:56312539-56312558 MS.gene036038:intron 35.0%
GAAGAAGTCTCACATAGAAA+AGG + chr1.4:56308411-56308430 MS.gene036038:CDS 35.0%
GATAGATAAACAGTTATGCG+AGG - chr1.4:56311893-56311912 None:intergenic 35.0%
GATAGTTCATTGAATACCAG+GGG - chr1.4:56308650-56308669 None:intergenic 35.0%
GATGTTAGTGACCTTACAAA+AGG + chr1.4:56310008-56310027 MS.gene036038:CDS 35.0%
GCACCCTAAAATTCAAACTA+AGG + chr1.4:56311004-56311023 MS.gene036038:intron 35.0%
GCTTGCTTGCATATTGTTTA+TGG - chr1.4:56309094-56309113 None:intergenic 35.0%
GGATAGTTCATTGAATACCA+GGG - chr1.4:56308651-56308670 None:intergenic 35.0%
GGTTGAAATCCCAATTCAAA+TGG + chr1.4:56312203-56312222 MS.gene036038:CDS 35.0%
GTGCCTGTACAAATAAAACT+GGG + chr1.4:56310216-56310235 MS.gene036038:CDS 35.0%
TAAAAACTGGCAACTTATCG+AGG + chr1.4:56307989-56308008 MS.gene036038:CDS 35.0%
TCATAATCTTCCTCATCAAC+GGG - chr1.4:56308604-56308623 None:intergenic 35.0%
TCTATGTGAGACTTCTTCAA+CGG - chr1.4:56308409-56308428 None:intergenic 35.0%
TCTTCTTAACTTATGCCCTA+AGG + chr1.4:56311638-56311657 MS.gene036038:intron 35.0%
TGAGTTTGAATCACAATCCA+TGG - chr1.4:56308793-56308812 None:intergenic 35.0%
TGCATAAGATACTCTATGGT+AGG + chr1.4:56309144-56309163 MS.gene036038:intron 35.0%
TGCATTCTAACATCACTTTG+TGG - chr1.4:56309900-56309919 None:intergenic 35.0%
TGCCTGTACAAATAAAACTG+GGG + chr1.4:56310217-56310236 MS.gene036038:CDS 35.0%
TGGAATAACATACAACTTGC+AGG + chr1.4:56310475-56310494 MS.gene036038:CDS 35.0%
TGTGCCTGTACAAATAAAAC+TGG + chr1.4:56310215-56310234 MS.gene036038:CDS 35.0%
TTATACGATCTTCTGTAGAC+TGG - chr1.4:56309977-56309996 None:intergenic 35.0%
TTCCTGAAGCAAAAGTGAAA+CGG + chr1.4:56307937-56307956 MS.gene036038:CDS 35.0%
TTGATATCCGGAAAAAATGG+AGG + chr1.4:56311102-56311121 MS.gene036038:intron 35.0%
TTGATGAGGAAGATTATGAG+CGG + chr1.4:56308605-56308624 MS.gene036038:CDS 35.0%
TTTCAGTTGCATGCTTCTAA+TGG + chr1.4:56312027-56312046 MS.gene036038:intron 35.0%
! ACAACTTCTAAAGATGATGG+AGG + chr1.4:56309524-56309543 MS.gene036038:CDS 35.0%
! ATCGACCCAAATTTTTCTGT+CGG + chr1.4:56309573-56309592 MS.gene036038:CDS 35.0%
! ATCTCGGAACACAAGATTTT+GGG - chr1.4:56310108-56310127 None:intergenic 35.0%
! GAAAAGTGCAACCAAGTAAT+AGG - chr1.4:56311141-56311160 None:intergenic 35.0%
! GTCAATTCATAAGAAGCATG+TGG - chr1.4:56308565-56308584 None:intergenic 35.0%
! TAGGTATTTTTCACATCCGA+AGG + chr1.4:56310705-56310724 MS.gene036038:intron 35.0%
! TTTTTCACATCCGAAGGAAA+AGG + chr1.4:56310711-56310730 MS.gene036038:CDS 35.0%
!! AAATGTTAACTTGTGCCCTT+AGG - chr1.4:56311657-56311676 None:intergenic 35.0%
!! AATGGTGTTACTGAAAAGCA+AGG + chr1.4:56309348-56309367 MS.gene036038:CDS 35.0%
!! AATGTTAACTTGTGCCCTTA+GGG - chr1.4:56311656-56311675 None:intergenic 35.0%
!! CTATGTTTCTGGTGGTAAAA+AGG - chr1.4:56312376-56312395 None:intergenic 35.0%
!! TTTGTCTTCTCCCATTTTTC+CGG - chr1.4:56311065-56311084 None:intergenic 35.0%
!!! ACTATGTCCTCCATTTTTTC+CGG - chr1.4:56311112-56311131 None:intergenic 35.0%
!!! CCATTTTTTCCGGATATCAA+TGG - chr1.4:56311102-56311121 None:intergenic 35.0%
!!! TTTTGGGGTATGTAGTTGAA+AGG - chr1.4:56310092-56310111 None:intergenic 35.0%
AAACTGTTCCAGTGCAAATG+TGG + chr1.4:56312817-56312836 MS.gene036038:CDS 40.0%
AACATAGGAGGACATAACCA+GGG + chr1.4:56311229-56311248 MS.gene036038:intron 40.0%
AACATTTAACGGAGCTTCCT+CGG - chr1.4:56308314-56308333 None:intergenic 40.0%
AAGTGATGTTAGAATGCAGC+CGG + chr1.4:56309902-56309921 MS.gene036038:CDS 40.0%
ACATTTGCCGAGGAACTATT+TGG - chr1.4:56312113-56312132 None:intergenic 40.0%
ACTGAGTGAATTTGGAGACA+CGG - chr1.4:56309934-56309953 None:intergenic 40.0%
ACTTCTGCCAAATAGTTCCT+CGG + chr1.4:56312103-56312122 MS.gene036038:intron 40.0%
AGTTGTATGTTATTCCACGC+TGG - chr1.4:56310472-56310491 None:intergenic 40.0%
ATAGTTGGGACCCTATTACT+TGG + chr1.4:56311127-56311146 MS.gene036038:intron 40.0%
ATCAAGCATAGATGTGTCCA+AGG + chr1.4:56309680-56309699 MS.gene036038:CDS 40.0%
ATCAATAATGGCGAAAGTGG+TGG - chr1.4:56313097-56313116 None:intergenic 40.0%
ATCCAATTTGACATGTGTCG+TGG - chr1.4:56312941-56312960 None:intergenic 40.0%
ATCCAGCAAAAGAGTAGAAC+AGG - chr1.4:56312900-56312919 None:intergenic 40.0%
ATCTACTTACCCAGTTCTAC+TGG + chr1.4:56310854-56310873 MS.gene036038:CDS 40.0%
ATGCAGAACCATCAAGCTTA+AGG + chr1.4:56309310-56309329 MS.gene036038:intron 40.0%
CAAGATGCAACTTCCTATAC+AGG - chr1.4:56310180-56310199 None:intergenic 40.0%
CAGACTCATCTAGTGGAAAA+AGG - chr1.4:56311724-56311743 None:intergenic 40.0%
CAGATGTTCTGATGCAAACT+TGG + chr1.4:56312182-56312201 MS.gene036038:intron 40.0%
CAGTAAAAGCAATGCTGTTG+AGG - chr1.4:56310317-56310336 None:intergenic 40.0%
CAGTGTCATCTGATGTGAAT+GGG + chr1.4:56308479-56308498 MS.gene036038:CDS 40.0%
CCACTTCTTTACGTGTGTTA+TGG - chr1.4:56309401-56309420 None:intergenic 40.0%
CCATAACACACGTAAAGAAG+TGG + chr1.4:56309398-56309417 MS.gene036038:CDS 40.0%
CCATTAAAGAGTTGCATGAG+AGG + chr1.4:56310805-56310824 MS.gene036038:CDS 40.0%
CCTCTCATGCAACTCTTTAA+TGG - chr1.4:56310808-56310827 None:intergenic 40.0%
CTATGTGAGACTTCTTCAAC+GGG - chr1.4:56308408-56308427 None:intergenic 40.0%
CTCACCTATTGTTTCAAGGT+TGG + chr1.4:56310982-56311001 MS.gene036038:intron 40.0%
CTCTTCAAGTGTCCTTTACA+TGG - chr1.4:56310386-56310405 None:intergenic 40.0%
CTGGACACTCCATTTGAATT+GGG - chr1.4:56312215-56312234 None:intergenic 40.0%
CTGGGATGTTTCATCAAAGT+TGG + chr1.4:56311309-56311328 MS.gene036038:intron 40.0%
CTTGAAAGGTCAAAGAGTGA+TGG + chr1.4:56310350-56310369 MS.gene036038:CDS 40.0%
GCAAAGATTGTCCACTTGAA+AGG + chr1.4:56310336-56310355 MS.gene036038:CDS 40.0%
GCCTGTACAAATAAAACTGG+GGG + chr1.4:56310218-56310237 MS.gene036038:CDS 40.0%
GGATAGCAGACCATATAGTA+AGG + chr1.4:56312639-56312658 MS.gene036038:intron 40.0%
GGGATAGTTCATTGAATACC+AGG - chr1.4:56308652-56308671 None:intergenic 40.0%
GTCAAAGAGTGATGGTTGTT+TGG + chr1.4:56310358-56310377 MS.gene036038:CDS 40.0%
GTGGGATTCAACATTTGTGA+AGG + chr1.4:56310884-56310903 MS.gene036038:CDS 40.0%
TACAGCTCAAGGCCTAATTA+AGG + chr1.4:56310253-56310272 MS.gene036038:CDS 40.0%
TATGAGATTGCCAACATAGG+AGG + chr1.4:56311217-56311236 MS.gene036038:intron 40.0%
TATGTGAGACTTCTTCAACG+GGG - chr1.4:56308407-56308426 None:intergenic 40.0%
TCACTCTTTGACCTTTCAAG+TGG - chr1.4:56310350-56310369 None:intergenic 40.0%
TCATAACTAGCATCTCGCAT+GGG - chr1.4:56308520-56308539 None:intergenic 40.0%
TCCTGAAGCAAAAGTGAAAC+GGG + chr1.4:56307938-56307957 MS.gene036038:CDS 40.0%
TCTGGACACTCCATTTGAAT+TGG - chr1.4:56312216-56312235 None:intergenic 40.0%
TGCATCAATAATGGCGAAAG+TGG - chr1.4:56313100-56313119 None:intergenic 40.0%
TTACGTGTGTTATGGTGTGA+TGG - chr1.4:56309393-56309412 None:intergenic 40.0%
TTGTCAGCTGAAACTGATAG+AGG + chr1.4:56309039-56309058 MS.gene036038:intron 40.0%
! AACCTGTTCTACTCTTTTGC+TGG + chr1.4:56312895-56312914 MS.gene036038:intron 40.0%
! ACTTTGTTGTATCACTTGGG+AGG + chr1.4:56312984-56313003 MS.gene036038:intron 40.0%
! AGAAGCATGCAACTGAAACA+AGG - chr1.4:56312025-56312044 None:intergenic 40.0%
! ATGGTGTTTCTGCAGGATTA+TGG + chr1.4:56312763-56312782 MS.gene036038:intron 40.0%
! CATCTCGGAACACAAGATTT+TGG - chr1.4:56310109-56310128 None:intergenic 40.0%
! GAGGCAACTTATTTGCCTTT+TGG + chr1.4:56313003-56313022 MS.gene036038:intron 40.0%
! GGTTGTTTGGAACCATGTAA+AGG + chr1.4:56310371-56310390 MS.gene036038:CDS 40.0%
! TCACACACAAATGCTCCTTT+TGG - chr1.4:56310765-56310784 None:intergenic 40.0%
! TCTCGGAACACAAGATTTTG+GGG - chr1.4:56310107-56310126 None:intergenic 40.0%
! TGAAGAAGGCGATGATTTTG+AGG + chr1.4:56308046-56308065 MS.gene036038:CDS 40.0%
!! ACAGTTTGACAGGTTGATCA+TGG - chr1.4:56312804-56312823 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTTA+GGG + chr1.4:56311500-56311519 MS.gene036038:intron 40.0%
!! GGCACTGCTTGTATTTTAGA+AGG + chr1.4:56309165-56309184 MS.gene036038:intron 40.0%
!! TCATGTTAACTTGTGCCCTT+AGG + chr1.4:56311499-56311518 MS.gene036038:intron 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG - chr1.4:56311517-56311536 None:intergenic 40.0%
AAACTCTGTCATTGCCTGCA+GGG - chr1.4:56307913-56307932 None:intergenic 45.0%
AATGTGGCAGTAAGTTCTGC+AGG + chr1.4:56312833-56312852 MS.gene036038:CDS 45.0%
ACATCCGAAGGAAAAGGATG+GGG + chr1.4:56310717-56310736 MS.gene036038:CDS 45.0%
ACCTTAGAGGAACTGCCAAA+AGG + chr1.4:56310747-56310766 MS.gene036038:CDS 45.0%
ACGGGTTCTCACTCATCAAA+TGG + chr1.4:56309753-56309772 MS.gene036038:CDS 45.0%
ACTAGGTCTGCGTTAATTGC+TGG + chr1.4:56313161-56313180 MS.gene036038:CDS 45.0%
ACTTACTGCCACATTTGCAC+TGG - chr1.4:56312828-56312847 None:intergenic 45.0%
AGATGTGTCCAAGGAATCAG+AGG + chr1.4:56309689-56309708 MS.gene036038:CDS 45.0%
AGCAATTAACGCAGACCTAG+TGG - chr1.4:56313162-56313181 None:intergenic 45.0%
AGGCGCTATTCAAGGAAGAA+TGG + chr1.4:56309330-56309349 MS.gene036038:CDS 45.0%
ATGGGAGAAGACAAAGTAGG+AGG + chr1.4:56311070-56311089 MS.gene036038:intron 45.0%
CAAATCCTTACTGCCCACAA+TGG - chr1.4:56309730-56309749 None:intergenic 45.0%
CAACATAGGAGGACATAACC+AGG + chr1.4:56311228-56311247 MS.gene036038:intron 45.0%
CACATCCGAAGGAAAAGGAT+GGG + chr1.4:56310716-56310735 MS.gene036038:CDS 45.0%
CACTAGATGAGTCTGCAACA+TGG + chr1.4:56311729-56311748 MS.gene036038:intron 45.0%
CAGTTATGCGAGGCAAGTTA+AGG - chr1.4:56311883-56311902 None:intergenic 45.0%
CATGTTGCAGACTCATCTAG+TGG - chr1.4:56311731-56311750 None:intergenic 45.0%
CATTGTGGGCAGTAAGGATT+TGG + chr1.4:56309728-56309747 MS.gene036038:CDS 45.0%
CGAGATGCTAGTTATGACAG+GGG + chr1.4:56308523-56308542 MS.gene036038:CDS 45.0%
CTGAGTGAATTTGGAGACAC+GGG - chr1.4:56309933-56309952 None:intergenic 45.0%
CTGGTTATGTCCTCCTATGT+TGG - chr1.4:56311230-56311249 None:intergenic 45.0%
CTTATCTCATAGCTGAGCAG+CGG + chr1.4:56311989-56312008 MS.gene036038:intron 45.0%
GAAAAGGACACAGCACTTGA+AGG + chr1.4:56308427-56308446 MS.gene036038:CDS 45.0%
GAATAGCGCCTTAAGCTTGA+TGG - chr1.4:56309321-56309340 None:intergenic 45.0%
GAGGACAGTTGTTCCTGTAT+AGG + chr1.4:56310164-56310183 MS.gene036038:CDS 45.0%
GCAGTGTCATCTGATGTGAA+TGG + chr1.4:56308478-56308497 MS.gene036038:CDS 45.0%
GCATTTGTGTGTGAGTTTGC+TGG + chr1.4:56310771-56310790 MS.gene036038:CDS 45.0%
GCCCAATCCAAAAATAGCAG+CGG + chr1.4:56307887-56307906 MS.gene036038:CDS 45.0%
GCGAGATGCTAGTTATGACA+GGG + chr1.4:56308522-56308541 MS.gene036038:CDS 45.0%
GGTATGTAGTTGAAAGGTGG+TGG - chr1.4:56310086-56310105 None:intergenic 45.0%
GGTGCCAACCTTGAAACAAT+AGG - chr1.4:56310989-56311008 None:intergenic 45.0%
GTCATAACTAGCATCTCGCA+TGG - chr1.4:56308521-56308540 None:intergenic 45.0%
GTCATCCAAACTGCTCTGAT+GGG - chr1.4:56309838-56309857 None:intergenic 45.0%
GTCATCTGATGTGAATGGGA+GGG + chr1.4:56308483-56308502 MS.gene036038:CDS 45.0%
GTGATAGCCTCTTCAACTCA+GGG + chr1.4:56309432-56309451 MS.gene036038:CDS 45.0%
GTTGTTCTTGAGTAGGCATG+CGG - chr1.4:56309509-56309528 None:intergenic 45.0%
TAAATCTGAGCCCGTTGATG+AGG + chr1.4:56308591-56308610 MS.gene036038:CDS 45.0%
TAACCAGGAAGAAGAGATGG+AGG + chr1.4:56308288-56308307 MS.gene036038:intron 45.0%
TATGCGAGGCAAGTTAAGGA+AGG - chr1.4:56311879-56311898 None:intergenic 45.0%
TCACATCCGAAGGAAAAGGA+TGG + chr1.4:56310715-56310734 MS.gene036038:CDS 45.0%
TCCAAGGAATCAGAGGTTGA+TGG + chr1.4:56309696-56309715 MS.gene036038:CDS 45.0%
TGCAGGCAATGACAGAGTTT+GGG + chr1.4:56307913-56307932 MS.gene036038:CDS 45.0%
TGCGAGATGCTAGTTATGAC+AGG + chr1.4:56308521-56308540 MS.gene036038:CDS 45.0%
TGGGGTATGTAGTTGAAAGG+TGG - chr1.4:56310089-56310108 None:intergenic 45.0%
TGTCATCTGATGTGAATGGG+AGG + chr1.4:56308482-56308501 MS.gene036038:CDS 45.0%
TGTGATAGCCTCTTCAACTC+AGG + chr1.4:56309431-56309450 MS.gene036038:CDS 45.0%
TTACCCAGTTCTACTGGATG+CGG + chr1.4:56310860-56310879 MS.gene036038:CDS 45.0%
TTCATGCGCTGCTATGTTTC+TGG - chr1.4:56312387-56312406 None:intergenic 45.0%
TTGCACTGGAACAGTTTGAC+AGG - chr1.4:56312814-56312833 None:intergenic 45.0%
! AACGGGCTCAGATTTAGGTA+CGG - chr1.4:56308587-56308606 None:intergenic 45.0%
! AAGTCCCCATCCTTTTCCTT+CGG - chr1.4:56310724-56310743 None:intergenic 45.0%
! AGTGGTGGTGTCTACATACA+TGG - chr1.4:56313082-56313101 None:intergenic 45.0%
! CAAGCTTAAGGCGCTATTCA+AGG + chr1.4:56309322-56309341 MS.gene036038:CDS 45.0%
! CTTTTGATGCAGGATCCACT+AGG + chr1.4:56313144-56313163 MS.gene036038:intron 45.0%
! GTTATGGTGTGATGGTGTCA+TGG - chr1.4:56309385-56309404 None:intergenic 45.0%
! TAAGAAGCATGTGGTGATGC+AGG - chr1.4:56308556-56308575 None:intergenic 45.0%
! TACTTCTCCCTGAGTTGAAG+AGG - chr1.4:56309442-56309461 None:intergenic 45.0%
! TCATCAACGGGCTCAGATTT+AGG - chr1.4:56308592-56308611 None:intergenic 45.0%
! TCCTTTTGGCAGTTCCTCTA+AGG - chr1.4:56310751-56310770 None:intergenic 45.0%
! TCTTCTGTAGACTGGTGATG+TGG - chr1.4:56309969-56309988 None:intergenic 45.0%
!! GTTCCTTAACTTGTGCCCTA+AGG - chr1.4:56311518-56311537 None:intergenic 45.0%
!! TACTGGTTTCCGAGATGAAC+AGG + chr1.4:56309862-56309881 MS.gene036038:CDS 45.0%
!! TGATGGTGTCATGGAGACAT+GGG - chr1.4:56309376-56309395 None:intergenic 45.0%
!!! GCCCCCAGTTTTATTTGTAC+AGG - chr1.4:56310222-56310241 None:intergenic 45.0%
!!! GCCGCTGCTATTTTTGGATT+GGG - chr1.4:56307891-56307910 None:intergenic 45.0%
!!! GCTATTTTTGGATTGGGCCT+TGG - chr1.4:56307885-56307904 None:intergenic 45.0%
!! AAACAATAAAAATAATATTA+AGG - chr1.4:56308673-56308692 None:intergenic 5.0%
!! AACAATAAAAATAATATTAA+GGG - chr1.4:56308672-56308691 None:intergenic 5.0%
AAGGACACAGCACTTGAAGG+CGG + chr1.4:56308430-56308449 MS.gene036038:CDS 50.0%
ACTCCGCATCCAGTAGAACT+GGG - chr1.4:56310866-56310885 None:intergenic 50.0%
AGCGCATGAAGAGCTCACTT+GGG + chr1.4:56312397-56312416 MS.gene036038:CDS 50.0%
AGCTGAAACTGATAGAGGCG+AGG + chr1.4:56309044-56309063 MS.gene036038:intron 50.0%
AGTTCTACTGGATGCGGAGT+GGG + chr1.4:56310866-56310885 MS.gene036038:CDS 50.0%
ATAGGAGGACATAACCAGGG+AGG + chr1.4:56311232-56311251 MS.gene036038:intron 50.0%
ATCCTTACTGCCCACAATGG+CGG - chr1.4:56309727-56309746 None:intergenic 50.0%
ATGGGGACTTCGTACCTTAG+AGG + chr1.4:56310734-56310753 MS.gene036038:CDS 50.0%
CAAACTCTGTCATTGCCTGC+AGG - chr1.4:56307914-56307933 None:intergenic 50.0%
CAGTTTGGATGACGCTGTAC+TGG + chr1.4:56309845-56309864 MS.gene036038:CDS 50.0%
CGTCATCCAAACTGCTCTGA+TGG - chr1.4:56309839-56309858 None:intergenic 50.0%
CTGCAGGCAATGACAGAGTT+TGG + chr1.4:56307912-56307931 MS.gene036038:CDS 50.0%
GCCATCAACCTCTGATTCCT+TGG - chr1.4:56309700-56309719 None:intergenic 50.0%
GGCAGTAAGGATTTGGACAC+GGG + chr1.4:56309735-56309754 MS.gene036038:CDS 50.0%
GGCCACGACACATGTCAAAT+TGG + chr1.4:56312936-56312955 MS.gene036038:intron 50.0%
GGGCAGTAAGGATTTGGACA+CGG + chr1.4:56309734-56309753 MS.gene036038:CDS 50.0%
GTTGGAGCAAATGTGGCTGT+GGG + chr1.4:56310423-56310442 MS.gene036038:CDS 50.0%
TCTATCTCGTATTGGGGCTG+AGG + chr1.4:56310145-56310164 MS.gene036038:CDS 50.0%
TGAGTAGGCATGCGGAAATC+TGG - chr1.4:56309501-56309520 None:intergenic 50.0%
TGATGTTAGAATGCAGCCGG+AGG + chr1.4:56309905-56309924 MS.gene036038:CDS 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + chr1.4:56311512-56311531 MS.gene036038:intron 50.0%
TGCTTAGATGCAGCGTCCTT+TGG + chr1.4:56310921-56310940 MS.gene036038:CDS 50.0%
TGTGGCTGTGGGAAACAATG+TGG + chr1.4:56310434-56310453 MS.gene036038:CDS 50.0%
TGTTGGAGCAAATGTGGCTG+TGG + chr1.4:56310422-56310441 MS.gene036038:CDS 50.0%
! ATTTTTACCCCTCTCCCCTG+TGG + chr1.4:56308084-56308103 MS.gene036038:intron 50.0%
! GATGACACTGCGTTGTTTCG+AGG - chr1.4:56308469-56308488 None:intergenic 50.0%
! TTTGGGGTAGGGAGAGATCA+AGG - chr1.4:56311829-56311848 None:intergenic 50.0%
!! ATGCGCTGCTATGTTTCTGG+TGG - chr1.4:56312384-56312403 None:intergenic 50.0%
!! CTCTGATGGGCTGGTGAAAA+GGG - chr1.4:56309825-56309844 None:intergenic 50.0%
!! GCCCGTTTCACTTTTGCTTC+AGG - chr1.4:56307942-56307961 None:intergenic 50.0%
!! GTGATGGTGTCATGGAGACA+TGG - chr1.4:56309377-56309396 None:intergenic 50.0%
!! TCTGATGGGCTGGTGAAAAG+GGG - chr1.4:56309824-56309843 None:intergenic 50.0%
!!! GGCCGCTGCTATTTTTGGAT+TGG - chr1.4:56307892-56307911 None:intergenic 50.0%
AAAAATAGCAGCGGCCCTGC+AGG + chr1.4:56307896-56307915 MS.gene036038:CDS 55.0%
AACGGGGAAGAAGCTGAGCT+AGG - chr1.4:56308391-56308410 None:intergenic 55.0%
ACCAGCCCATCAGAGCAGTT+TGG + chr1.4:56309830-56309849 MS.gene036038:CDS 55.0%
ACCAGGGGGAACCATTGCAA+GGG - chr1.4:56308635-56308654 None:intergenic 55.0%
ACGGGGAAGAAGCTGAGCTA+GGG - chr1.4:56308390-56308409 None:intergenic 55.0%
AGCTGCAGCTCAGCTCTTCA+GGG + chr1.4:56309474-56309493 MS.gene036038:CDS 55.0%
CACACACACGCACCCAACTA+TGG + chr1.4:56308817-56308836 MS.gene036038:intron 55.0%
CACTCCGCATCCAGTAGAAC+TGG - chr1.4:56310867-56310886 None:intergenic 55.0%
CAGCGCATGAAGAGCTCACT+TGG + chr1.4:56312396-56312415 MS.gene036038:CDS 55.0%
CAGTTCTACTGGATGCGGAG+TGG + chr1.4:56310865-56310884 MS.gene036038:CDS 55.0%
GGAAATCGCGTTATCCAGCG+TGG + chr1.4:56310455-56310474 MS.gene036038:CDS 55.0%
TACCAGGGGGAACCATTGCA+AGG - chr1.4:56308636-56308655 None:intergenic 55.0%
TCCTTACTGCCCACAATGGC+GGG - chr1.4:56309726-56309745 None:intergenic 55.0%
TCTCATAGCTGAGCAGCGGA+AGG + chr1.4:56311993-56312012 MS.gene036038:intron 55.0%
TCTGCCTTGGTTTCACCTCG+AGG + chr1.4:56309798-56309817 MS.gene036038:CDS 55.0%
TTTGGAGACACGGGATCCTC+CGG - chr1.4:56309924-56309943 None:intergenic 55.0%
! TCCAAACTGCTCTGATGGGC+TGG - chr1.4:56309834-56309853 None:intergenic 55.0%
!! GCTCTGATGGGCTGGTGAAA+AGG - chr1.4:56309826-56309845 None:intergenic 55.0%
!!! TGCAGGGCCGCTGCTATTTT+TGG - chr1.4:56307897-56307916 None:intergenic 55.0%
ACCCGCCATTGTGGGCAGTA+AGG + chr1.4:56309722-56309741 MS.gene036038:CDS 60.0%
CCAGGGGGAACCATTGCAAG+GGG - chr1.4:56308634-56308653 None:intergenic 60.0%
CGGCCTCCATCTCTTCTTCC+TGG - chr1.4:56308294-56308313 None:intergenic 60.0%
CGGGGAAGAAGCTGAGCTAG+GGG - chr1.4:56308389-56308408 None:intergenic 60.0%
GAGCTGCAGCTCAGCTCTTC+AGG + chr1.4:56309473-56309492 MS.gene036038:CDS 60.0%
GATGGCACACCCGCCATTGT+GGG + chr1.4:56309714-56309733 MS.gene036038:CDS 60.0%
GGAAGAAGAGATGGAGGCCG+AGG + chr1.4:56308294-56308313 MS.gene036038:intron 60.0%
TGATGGCACACCCGCCATTG+TGG + chr1.4:56309713-56309732 MS.gene036038:CDS 60.0%
CAGTGTGTGCGCAGCCACAG+GGG - chr1.4:56308101-56308120 None:intergenic 65.0%
CCCCTTGCAATGGTTCCCCC+TGG + chr1.4:56308631-56308650 MS.gene036038:CDS 65.0%
GCAGTGTGTGCGCAGCCACA+GGG - chr1.4:56308102-56308121 None:intergenic 65.0%
GCTGGTGAAAAGGGGCCTCG+AGG - chr1.4:56309816-56309835 None:intergenic 65.0%
GGGGCCTCGAGGTGAAACCA+AGG - chr1.4:56309805-56309824 None:intergenic 65.0%
TGAGCGGCGTCCCCTTGCAA+TGG + chr1.4:56308621-56308640 MS.gene036038:CDS 65.0%
TGCAGTGTGTGCGCAGCCAC+AGG - chr1.4:56308103-56308122 None:intergenic 65.0%
GTGCGCAGCCACAGGGGAGA+GGG - chr1.4:56308095-56308114 None:intergenic 70.0%
TGCGCAGCCACAGGGGAGAG+GGG - chr1.4:56308094-56308113 None:intergenic 70.0%
TGTGCGCAGCCACAGGGGAG+AGG - chr1.4:56308096-56308115 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 56307876 56313187 56307876 ID=MS.gene036038
chr1.4 mRNA 56307876 56313187 56307876 ID=MS.gene036038.t1;Parent=MS.gene036038
chr1.4 exon 56307876 56308067 56307876 ID=MS.gene036038.t1.exon1;Parent=MS.gene036038.t1
chr1.4 CDS 56307876 56308067 56307876 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56308156 56308191 56308156 ID=MS.gene036038.t1.exon2;Parent=MS.gene036038.t1
chr1.4 CDS 56308156 56308191 56308156 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56308295 56308652 56308295 ID=MS.gene036038.t1.exon3;Parent=MS.gene036038.t1
chr1.4 CDS 56308295 56308652 56308295 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56309316 56310496 56309316 ID=MS.gene036038.t1.exon4;Parent=MS.gene036038.t1
chr1.4 CDS 56309316 56310496 56309316 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56310708 56310970 56310708 ID=MS.gene036038.t1.exon5;Parent=MS.gene036038.t1
chr1.4 CDS 56310708 56310970 56310708 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56312185 56312251 56312185 ID=MS.gene036038.t1.exon6;Parent=MS.gene036038.t1
chr1.4 CDS 56312185 56312251 56312185 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56312368 56312418 56312368 ID=MS.gene036038.t1.exon7;Parent=MS.gene036038.t1
chr1.4 CDS 56312368 56312418 56312368 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56312778 56312874 56312778 ID=MS.gene036038.t1.exon8;Parent=MS.gene036038.t1
chr1.4 CDS 56312778 56312874 56312778 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
chr1.4 exon 56313156 56313187 56313156 ID=MS.gene036038.t1.exon9;Parent=MS.gene036038.t1
chr1.4 CDS 56313156 56313187 56313156 ID=cds.MS.gene036038.t1;Parent=MS.gene036038.t1
Gene Sequence

>MS.gene036038

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTGCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGTGTTTTTCTCGCTTTATTTTTACCCCTCTCCCCTGTGGCTGCGCACACACTGCAAACTTACTTCTATTGTTGGATTTTATTTGACAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGTACGTAACATTCATAATTTTCTGTTGGCAACTTATCTGCATTACTTTATCGATTTTATGTCTATAGCTGCTGAATATGTATTCTGCATTTTCATATAACCAGGAAGAAGAGATGGAGGCCGAGGAAGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCGTTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCTTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCACATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGGTATTCAATGAACTATCCCTTAATATTATTTTTATTGTTTTTGACATCTTAGTTGTAATTGGCATGTTTGGATTATAATTTGCAAACTTTGATTTAATTTATCAGAAAAGTAACTTTGTTTTATTCTTCTTTTCAAACCATGGATTGTGATTCAAACTCATGTTCACACACACGCACCCAACTATGGTTTTGCTAAATGTATTATTGTATTATTTGTGGATGGAACTATGTGATGTATCTGATTGCTAGTACGATAAGATAGATGTATACATCTTACAAAATACAGATACAGAACTTTATTGTCAGAGTACTTGAAAAGAATAAAGTCAATGCACGAATTATTAGTTTAACTGCTTTTGACACTACCATTGCATAATTGCATCATGTTGTCAGCTGAAACTGATAGAGGCGAGGCACATTGATCATATGCACTATTTTCCATAAACAATATGCAAGCAAGCCTTTACTGATTTATGAGTTTCTAGAAAGTTTGCATAAGATACTCTATGGTAGGCACTGCTTGTATTTTAGAAGGCAGAGTTTGACCTCTGAATCTGACCAATTATTTTTCTTTTTCAACATTGTTTTGCCACTTTCAATTTCGTTCTTTCGTTGCATGTTAACATTCATCTTGTAAAGATATATATATTTTTTTAAATGCAGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAACTCAGGGAGAAGTAAAACTCTCTCTGAGCTGCAGCTCAGCTCTTCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTAAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAAATCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCCAAGGAATCAGAGGTTGATGGCACACCCGCCATTGTGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGACGCTGTACTGGTTTCCGAGATGAACAGGACAATTGATATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGACTTTCCACCACCTTTCAACTACATACCCCAAAATCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACAAATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTGAGTGTTTCAGTAATCTCTGCCACTAGTAAACAAAGACATTTTCTCCAATATTGATTCATAATTTTTATTAAAAAGTTCTTACACGTTGAATTTATTGTTTATGTCAAGTTATGTATCTGCAGGTCCAAGTTCCTATGTATTAGTATAATGTTATTCCCCGGTATATTTTTAAAATGTTTTCTCTAAATATTTTAATTTTTAAATTTAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGAGTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGGTATTGAATTTCTCACCTATTGTTTCAAGGTTGGCACCCTAAAATTCAAACTAAGGAAAACAGAGAAATAGGAGGACATAACAATTGATATCCGGAAAAATGGGAGAAGACAAAGTAGGAGGACATAACCATTGATATCCGGAAAAAATGGAGGACATAGTTGGGACCCTATTACTTGGTTGCACTTTTCATTGATAATAAGACAGTATTCATTTTTCATAGTTTATACTATTTTTTTTTTTTTTATATGAGATTGCCAACATAGGAGGACATAACCAGGGAGGAATATTTAATCATACAGACTATGCATCTAGAAAAGAAAAAAAAAAGATATTTGGCTGGGATGTTTCATCAAAGTTGGCATGTATTTATAATATTATATGAATAAGAACAATAACTTGAGTTTAATGTGGTTGTAGTTCATATTGTTTTAAACACGTGCACTTCTAATTCTAAACATCCGAAGAGAAAAGAAATTTTTCTATGTAATTGTCATGATTGAGAAATTGCTCATTATAAATTAAAGGGTCATGTTAACTTGTGCCCTTAGGGCACAAGTTAAGGAACTTAAAATGGAAATTAAAAATAAATTTTATATTGAAAGTATAACTTTTACAAATTTTAAGACATTGAATGTACAAGTTCCAAGAAAAACCTTCTACATTTATCTTCTTAACTTATGCCCTAAGGGCACAAGTTAACATTTCCCTAAATTAAAATATGTATTACAACGTTGAAAATGAGTCAGAGCCTTTTTCCACTAGATGAGTCTGCAACATGGATCCTCAAACTATGCTCATATGTAACGATAAACCACTTAATACCAATTATTTTAATCGTTTGAACTACACTTTTCCTTGATCTCTCCCTACCCCAAACTGTTTAAATATCCTTGATCTGATTTACCTTCCTTAACTTGCCTCGCATAACTGTTTATCTATCGCAATATTCCCATTTTTATAAAATTGGGTTTACTTTCTTGTATGCTATTTTTATACATTCAACTCAAATATTATTACTTATCTCATAGCTGAGCAGCGGAAGGTTCAATCCTTGTTTCAGTTGCATGCTTCTAATGGTTGATTGTGTATTTAGATGATTCAATACTATGACTGTGTTATGTTAACTCTTGACTTCTGCCAAATAGTTCCTCGGCAAATGTTTGAATGTTTTTTGGTTATTTAGGAGATTTTGTAATAACTTTAATTTTTCAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATGGAGTGTCCAGATCGTTACTACTATCATGTGAGAAGCTACCTAATCTTTGAAGTCTGAAAAGCTGTTTTACTTGCCTTCTGTTGTTATACTAATCTGTGTTGCAATTTTGCTTACCAATGCTTTTGATGTTTTGCAATTTGCAGTTTGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGTAAGTTTTGTTATGTAATATGGTTTTTCATGAAATTTTCTAGCTCACATGGGTCCTCCTATATTGTATAAAATTTTCACTTCTTTACGGTGCTTACTAATGACTCTCTTTTTAAGTAGTGAACAAACGATTAACACAGTTGGGATAATTTATTTATGGCTAAACTTATTTTCTAGTTTTTCATGGCTACTTAATTAAGAAATGCTTATGTACTTTGGGTGGATAGCAGACCATATAGTAAGGTTATACTGAGGAGGAGTGCCTGTTCATTTTTGTAGTTTACTTTCTTCAAATCATTTCATTAATCTAGAATCATTTTTTTTTCTAAACAGAAGCTTATTTTTATGGTGTTTCTGCAGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTCCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGTAGGTTCAATTTCTCAAACAACCTGTTCTACTCTTTTGCTGGATTGATAGTTGTTGAAAAGGCCACGACACATGTCAAATTGGATTTTTTTAGTTTTTAATTTAATTTACTTTGTTGTATCACTTGGGAGGCAACTTATTTGCCTTTTGGATTGTTTAATAACGTGCTTATAGCTTATGCTCTGATTGGTTTCAATTCACACACCATGTATGTAGACACCACCACTTTCGCCATTATTGATGCATGATTTCCGTATTTAATTTTTACTCTTTTGATGCAGGATCCACTAGGTCTGCGTTAATTGCTGGATGA
Protein sequence

>MS.gene036038.t1

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEEMEAEEAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSTQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDKSQEGSMSKSSIDVSKESEVDGTPAIVGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIDIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTNKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAEWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQMECPDRYYYHFALFTTRNIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG