AlfalfaGEDB | MS.gene23986

M. sativa cultivar XinJiangDaYe / MS.gene23986

KEGG: -
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008270 GO:0008276 GO:0008757 GO:0009987 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034968 GO:0036211 GO:0042054 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0046914 GO:0071704 GO:0071840 GO:0110165 GO:0140096 GO:1901564
PFAM: PF00856.31 PF05033.19 PF10440.12

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23986.t1	XP_013468439.1	96.4	758	27	0	1	758	1	758	0.00E+00	1470.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23986.t1	Q9FNC7	39.2	772	377	19	5	749	3	709	2.3e-126	454.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23986.t1	A0A072VLI9	96.4	758	27	0	1	758	1	758	0.0e+00	1470.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene23986.t1	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene23986	MS.gene018647	PPI
MS.gene23986	MS.gene73119	PPI
MS.gene23986	MS.gene038063	PPI
MS.gene23986	MS.gene052394	PPI
MS.gene23986	MS.gene23433	PPI
MS.gene23986	MS.gene036038	PPI
MS.gene23986	MS.gene064542	PPI
MS.gene23986	MS.gene89554	PPI
MS.gene23986	MS.gene035805	PPI
MS.gene23986	MS.gene035197	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23986.t1	MTR_1g069570	96.438	758	27	0	1	758	1	758	0.0	1524
MS.gene23986.t1	MTR_1g069570	96.160	677	26	0	1	677	1	677	0.0	1348
MS.gene23986.t1	MTR_7g098390	51.020	784	280	21	5	757	3	713	0.0	649
MS.gene23986.t1	MTR_1g080340	52.323	409	184	9	345	746	182	586	1.76e-144	437
MS.gene23986.t1	MTR_1g080340	27.206	272	143	11	6	255	4	242	9.25e-12	68.9
MS.gene23986.t1	MTR_8g106570	50.698	215	82	6	418	629	106	299	3.83e-62	211
MS.gene23986.t1	MTR_1g064770	74.286	70	18	0	553	622	22	91	6.87e-34	125
MS.gene23986.t1	MTR_5g013420	30.303	330	160	11	428	741	809	1084	1.88e-32	135
MS.gene23986.t1	MTR_5g013420	30.303	330	160	11	428	741	809	1084	2.09e-32	135
MS.gene23986.t1	MTR_7g052480	28.824	340	158	13	430	742	270	552	1.15e-30	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	3	709	1.87e-167	500
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	3	709	1.87e-167	500
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	3	709	1.87e-167	500
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	3	709	1.87e-167	500
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	26	732	2.59e-167	500
MS.gene23986.t1	AT5G43990	40.329	791	342	23	5	749	26	732	2.59e-167	500
MS.gene23986.t1	AT5G43990	40.439	774	345	21	5	749	3	689	2.65e-164	491
MS.gene23986.t1	AT5G43990	40.439	774	345	21	5	749	3	689	2.65e-164	491
MS.gene23986.t1	AT5G43990	40.439	774	345	21	5	749	3	689	2.65e-164	491
MS.gene23986.t1	AT5G43990	40.439	774	345	21	5	749	3	689	2.65e-164	491

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Find 179 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCTGTCATTGCCTGGA+GGG	0.550126	1.3:-49009559	None:intergenic
AAACTGTTCCAGTGCAAATG+TGG	0.628078	1.3:+49014275	MS.gene23986:CDS
AAAGAATGTTGGAGCAAATG+TGG	0.629844	1.3:+49012065	MS.gene23986:CDS
AAATCTAGCAATGTTGCCAA+AGG	0.600969	1.3:-49012589	None:intergenic
AAATGTTAACAGAAGCATCT+CGG	0.583016	1.3:-49011770	None:intergenic
AAATTTGCATATACAGCTCA+AGG	0.570666	1.3:+49011891	MS.gene23986:CDS
AACATGAAATGTGCTGAAAA+TGG	0.265651	1.3:+49012480	MS.gene23986:CDS
AACATTTAACGGAGCATCCT+CGG	0.461944	1.3:-49009960	None:intergenic
AACATTTCTCTATCTCGTAT+TGG	0.338243	1.3:+49011786	MS.gene23986:CDS
AACGGGCTCAGATTTAGGTA+CGG	0.633960	1.3:-49010233	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGGAGGACATAGTT+GGG	+	chr1.3:49012765-49012784	MS.gene23986:intron	30.0%
AAATAATTGGTCAGATTCAG+AGG	-	chr1.3:49010850-49010869	None:intergenic	30.0%
AAATTTGCATATACAGCTCA+AGG	+	chr1.3:49011891-49011910	MS.gene23986:CDS	30.0%
AACAAACGATTAACACAGTT+GGG	+	chr1.3:49013999-49014018	MS.gene23986:intron	30.0%
AACATGAAATGTGCTGAAAA+TGG	+	chr1.3:49012480-49012499	MS.gene23986:CDS	30.0%
AACATGATGCAATTATGCAA+TGG	-	chr1.3:49010670-49010689	None:intergenic	30.0%
AACATTTCTCTATCTCGTAT+TGG	+	chr1.3:49011786-49011805	MS.gene23986:CDS	30.0%
ACAATTGATATCCGGAAAAA+TGG	+	chr1.3:49012703-49012722	MS.gene23986:intron	30.0%
ACATGAAATGTGCTGAAAAT+GGG	+	chr1.3:49012481-49012500	MS.gene23986:CDS	30.0%
ACATTTAGCAAAACCATAGT+TGG	-	chr1.3:49010482-49010501	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	49009525	49014645	49009525	ID=MS.gene23986
chr1.3	mRNA	49009525	49014645	49009525	ID=MS.gene23986.t1;Parent=MS.gene23986
chr1.3	exon	49009525	49009716	49009525	ID=MS.gene23986.t1.exon1;Parent=MS.gene23986.t1
chr1.3	CDS	49009525	49009716	49009525	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49009805	49009840	49009805	ID=MS.gene23986.t1.exon2;Parent=MS.gene23986.t1
chr1.3	CDS	49009805	49009840	49009805	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49009944	49010301	49009944	ID=MS.gene23986.t1.exon3;Parent=MS.gene23986.t1
chr1.3	CDS	49009944	49010301	49009944	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49010965	49012145	49010965	ID=MS.gene23986.t1.exon4;Parent=MS.gene23986.t1
chr1.3	CDS	49010965	49012145	49010965	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49012360	49012622	49012360	ID=MS.gene23986.t1.exon5;Parent=MS.gene23986.t1
chr1.3	CDS	49012360	49012622	49012360	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49013644	49013710	49013644	ID=MS.gene23986.t1.exon6;Parent=MS.gene23986.t1
chr1.3	CDS	49013644	49013710	49013644	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49013827	49013877	49013827	ID=MS.gene23986.t1.exon7;Parent=MS.gene23986.t1
chr1.3	CDS	49013827	49013877	49013827	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49014236	49014332	49014236	ID=MS.gene23986.t1.exon8;Parent=MS.gene23986.t1
chr1.3	CDS	49014236	49014332	49014236	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3	exon	49014614	49014645	49014614	ID=MS.gene23986.t1.exon9;Parent=MS.gene23986.t1
chr1.3	CDS	49014614	49014645	49014614	ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1

Gene Sequence

>MS.gene23986

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGTGTTTTTCTCGCTTTATTTTTACCCCTCTCCCCTGTGGCTGCGCACACACTGCAAACTTACTTCTATTGTTGGATTTTATTTGACAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGTACGTAACATTCATAATTTTCTGTTGGCAACTTATCTGCATTACTTTATCGATTTTATGTCTATAGCTGCTGAATATGTATTCTGCATTTTCATATAACCAGGAAGAAGAGATGGAGGCCGAGGATGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCTTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCGCATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGGTATTCAATGAACTATCCCTTAATATTATTTTTATTGTTTTTGACATCTTAGTTGTAATTGGCATGTTTGGATTATAATTTGCAAACTTTGATTTAATTTATCAGAAAAGTAACTTTGTTTTATTCTTCTTTTCAAACCATGGATTGTGATTCAAACTCATGTTCACACACACGCACCCAACTATGGTTTTGCTAAATGTATTATTGTATTATTTGTGGATGGAACTATGTGATGTATCTGATTGCTAGTACGATAAGATAGATGTATACATCTTACAAAATACAGATACAGAACTTTATTGTCAGAGTACTTGAAAAGAATAAAGTCAATGCACGAATTATTAGTTTAACTGCTTTTGACACTACCATTGCATAATTGCATCATGTTGTCAGCTGAAACTGATAGAGGCGAGGCACATTGATCATATGCACTATTTTCCATAAACAATATGCAAGCAAGCCTTTACTGATTTATGAGTTTCTAGAAAGTTTGCATAAGATACTCTATGGTAGGCACTGCTTGTATTTTAGAAGGCAGAGTTTGACCTCTGAATCTGACCAATTATTTTTCTTTTTCAACATTGTTTTGCCACTTTCAATTTCGTTCTTTCGTTGCATGTTAACATTCATCTTGTAAAGATATATATATTTTTTTAAATGCAGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTAAAACTCTCTCTGAGCTGCAGCTCAGCTCTTCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTTAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAACTCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCCAAGGAATCTGAGGTTGATGGCACACCCGCCATTGTGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCGAGATGAACAGGACAATTGGTATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGACTTTCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACATATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTGAGTGTTTCAGTAATCTCTGCCACTAGTAAACAAAGACATTTTCTCCAATATTGATTCATAATTTTTATTTAAAAGTTCTTACACGTTGAATTTATTGTTTATGTCAAGTTATGTATCTGCAGGTCCAAGTTCCTATGTATTAGTATAATGTTATTCCCCGGTACATTTTTAAAATGTTTTCTCTAATTAATATTTTAATTTTTAAATTTAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGAGTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGGTATTGAATTTCTCACCTATTGTTTCAAGGTTGGCACCCTAAAATTCAAACTAAGGAAAACAGAGAAATAGGAGGACATAACAATTGATATCCGGAAAAATGGGAGAAGACAAAGTAGGAGGACATAACCATTGATATCCGGAAAAAATGGAGGACATAGTTGGGACCCTATTACTTGGTTGCACTTTTCATTGATAATAAGACAGTAATCATTTTTCATAGTTTATACTATTTTTTTTTTTTTTATATGAGATTGCCAACATAGGAGGACATAACCAGGGAGGAATATTTAATCATACAGACTATGCATCTAGAAAAGAAAAAAAAAAAGATATTTGGCTGGGATGTTTCATCAAAGTTGGCATGTATTTATAATATTATATGGATAAGAACAATAACTTGAGTTTAATGTGGTTGTAGTTCATATTGTTTTAAACACGTGCACTTCTAATTCTAAACATCCGAAGAGAAAAGAAATTTTTCTATGTAATTGTCATGATTGAGAAATAGTTCATTATAAATTAAAATATGTATTACAACGTTGAAAATGAGTCAGAGCCTTTTTCCACTAGATGAGTCTGCAACATGGATCCTCAAACTATGCTCATATGTAACGATAAACCACTTAATACCAATTATTTTAATCGTTTGAACTACACTTTTCCTTGATCTCTCCCTACCCCAAACTGTTTAAATATCCTTGATCTGATTTACCTTCCTTAACTTGCCTCGCATAACTGTTTATCTATCGCAATATTCCCATCTTTATAAAATTGGGTTTACTTTCTTGTATGCTATTTTTATACATTCAACTCAAATATTATTACTTATCTCATAGCTGGCAGCGGAAGGTTCAATCCTTGTTTCAGTTGCATGCTTCTAATGGTTGATTGTGTATTTAGATGATTCAATACTATGACTGTGTTATGTTAACTCTTGACTTCTGCCAAATAGTTCCTCGGCAAATGTTTGAAGGTTTTTTGGTTATTTAGGAGATTTTGTAATAACTTTAATTTTTCAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTACTACTATCATGTGAGAAGCTACCTAATCCTTGAAGTCTGAAAAGCTGTTTTACTTGCCTTCTGTTGTTATACTAATCTGCGTAGCAATTTTGCTTACCAATGCTTTTGATGTTTTGCAATTTGCAGTTTGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGTAAGTTTTGTTATGTAATATGGTTTTTCATGAAATTTTCTAGCTCACATGGGTCCTCCTATATTGTATAAAATTTTCACTTCTTTACGGTGCTTACTAATGACTCTCTTTTTAAGTAGTGAACAAACGATTAACACAGTTGGGATAATTTATTTATGGCTAAACTTATTTTCTAGTTTTTCATGGCTACTTAATCAAGAAATGCTTATGTACTTTGGGTGGATAGCAGACCATATAGTAAGGTTATACTGAGGAGGAGTGCCTGTTCATTTTTGTAGTTTACTTTCTTCAAATCATTTCATTAATCTAGAATCATTTTTTTTCTAAACAGAAGCTTATTTTTATGGTGTTTCTGCAGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTCCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGTAGGTTCAATTTCTCAAACAACCTGTTCTACTCTTTTGCTGGATTGATAGTTGTTGAAAAGGCCACGACACATGTCAAATTGGATTTTTTTAGTTTTTAATTTAATTTACTTTGTTGTATCACTTGGGAGGCAACTTATTTGCCTTTTGGATTGTTTAATAACGTGCTTATAGCTTATGCTCTGATTGGTTTCAATTCACACACCATGTATGTAGACACCACCACTTTCGCCATTATTGATGCATGATTTCCGTATTTAATTTTTACTCTTTTGATGCAGGATCCACTAGGTCTGCGTTAATTGCTGGATGA

Protein sequence

>MS.gene23986.t1

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEEMEAEDAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSAQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDNSQEGSMSKSSIDVSKESEVDGTPAIVGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIGIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTYKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAEWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFTTRNIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG