AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23986

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23986.t1 MTR_1g069570 96.438 758 27 0 1 758 1 758 0.0 1524
MS.gene23986.t1 MTR_1g069570 96.160 677 26 0 1 677 1 677 0.0 1348
MS.gene23986.t1 MTR_7g098390 51.020 784 280 21 5 757 3 713 0.0 649
MS.gene23986.t1 MTR_1g080340 52.323 409 184 9 345 746 182 586 1.76e-144 437
MS.gene23986.t1 MTR_1g080340 27.206 272 143 11 6 255 4 242 9.25e-12 68.9
MS.gene23986.t1 MTR_8g106570 50.698 215 82 6 418 629 106 299 3.83e-62 211
MS.gene23986.t1 MTR_1g064770 74.286 70 18 0 553 622 22 91 6.87e-34 125
MS.gene23986.t1 MTR_5g013420 30.303 330 160 11 428 741 809 1084 1.88e-32 135
MS.gene23986.t1 MTR_5g013420 30.303 330 160 11 428 741 809 1084 2.09e-32 135
MS.gene23986.t1 MTR_7g052480 28.824 340 158 13 430 742 270 552 1.15e-30 127
MS.gene23986.t1 MTR_7g088370 29.909 331 151 10 430 743 436 702 6.28e-30 127
MS.gene23986.t1 MTR_3g011440 28.487 337 169 10 428 742 374 660 2.57e-29 124
MS.gene23986.t1 MTR_8g078505 37.158 183 103 5 561 741 361 533 1.61e-28 121
MS.gene23986.t1 MTR_8g042750 27.976 336 173 10 428 744 401 686 1.14e-27 119
MS.gene23986.t1 MTR_4g010830 29.254 335 157 14 428 741 700 975 3.12e-27 119
MS.gene23986.t1 MTR_8g078490 36.413 184 110 4 561 743 1073 1250 2.50e-26 116
MS.gene23986.t1 MTR_7g084090 34.615 208 107 5 559 742 551 753 2.06e-25 112
MS.gene23986.t1 MTR_5g018850 36.413 184 108 6 561 742 1327 1503 3.03e-25 113
MS.gene23986.t1 MTR_4g132610 37.234 188 101 7 561 742 867 1043 8.48e-25 111
MS.gene23986.t1 MTR_6g061270 35.071 211 102 7 559 742 488 690 1.31e-23 107
MS.gene23986.t1 MTR_6g061200 28.895 353 184 12 395 742 371 661 1.70e-23 106
MS.gene23986.t1 MTR_4g010550 28.283 297 152 8 449 741 220 459 2.18e-23 104
MS.gene23986.t1 MTR_1g048950 29.560 318 151 11 428 741 280 528 4.53e-21 98.2
MS.gene23986.t1 MTR_8g070070 26.688 311 148 12 430 720 507 757 1.82e-20 97.1
MS.gene23986.t1 MTR_8g070075 25.402 311 152 11 430 720 500 750 1.97e-19 94.0
MS.gene23986.t1 MTR_1g035420 25.079 315 156 11 430 724 396 650 2.36e-18 90.1
MS.gene23986.t1 MTR_6g027690 32.500 160 102 3 563 719 241 397 6.83e-18 87.4
MS.gene23986.t1 MTR_6g044690 29.545 176 109 4 559 721 392 565 9.28e-18 87.8
MS.gene23986.t1 MTR_6g043960 29.545 176 109 4 559 721 310 483 3.15e-17 85.9
MS.gene23986.t1 MTR_3g088625 31.068 206 99 8 548 742 1288 1461 5.50e-17 86.7
MS.gene23986.t1 MTR_3g088625 31.068 206 99 8 548 742 1182 1355 5.64e-17 86.7
MS.gene23986.t1 MTR_2g054460 28.736 174 109 4 561 721 294 465 5.97e-16 81.6
MS.gene23986.t1 MTR_7g445600 33.333 135 63 3 584 718 248 355 6.13e-15 77.4
MS.gene23986.t1 MTR_7g445710 29.412 221 93 9 568 741 334 538 9.42e-15 78.2
MS.gene23986.t1 MTR_1g098370 29.412 238 122 10 511 741 35 233 4.36e-14 75.9
MS.gene23986.t1 MTR_7g450730 31.148 183 113 6 568 741 322 500 4.86e-14 75.9
MS.gene23986.t1 MTR_7g445530 29.744 195 77 8 568 718 334 512 1.26e-12 71.2
MS.gene23986.t1 MTR_1g098000 28.492 179 96 6 569 741 78 230 2.12e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 3 709 1.87e-167 500
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 3 709 1.87e-167 500
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 3 709 1.87e-167 500
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 3 709 1.87e-167 500
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 26 732 2.59e-167 500
MS.gene23986.t1 AT5G43990 40.329 791 342 23 5 749 26 732 2.59e-167 500
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 3 689 2.65e-164 491
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 3 689 2.65e-164 491
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 3 689 2.65e-164 491
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 3 689 2.65e-164 491
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 26 712 5.78e-164 491
MS.gene23986.t1 AT5G43990 40.439 774 345 21 5 749 26 712 5.78e-164 491
MS.gene23986.t1 AT5G43990 40.028 717 314 22 63 749 10 640 4.41e-148 447
MS.gene23986.t1 AT5G43990 40.028 717 314 22 63 749 10 640 4.41e-148 447
MS.gene23986.t1 AT5G43990 40.028 717 314 22 63 749 10 640 4.41e-148 447
MS.gene23986.t1 AT5G43990 40.028 717 314 22 63 749 10 640 4.41e-148 447
MS.gene23986.t1 AT5G43990 40.143 700 317 20 63 749 10 620 8.75e-145 439
MS.gene23986.t1 AT3G04380 52.661 357 162 7 393 745 81 434 1.26e-126 386
MS.gene23986.t1 AT1G04050 54.416 351 150 6 406 752 281 625 2.36e-126 391
MS.gene23986.t1 AT1G04050 31.977 172 95 7 228 380 176 344 1.45e-11 68.6
MS.gene23986.t1 AT3G04380 53.602 347 154 7 403 745 118 461 2.38e-126 386
MS.gene23986.t1 AT3G04380 52.661 357 162 7 393 745 81 434 2.63e-126 385
MS.gene23986.t1 AT3G04380 53.602 347 154 7 403 745 102 445 2.90e-126 385
MS.gene23986.t1 AT3G04380 52.661 357 162 7 393 745 65 418 4.16e-126 384
MS.gene23986.t1 AT3G04380 53.602 347 154 7 403 745 118 461 4.58e-126 385
MS.gene23986.t1 AT1G04050 54.416 351 150 6 406 752 385 729 1.01e-125 392
MS.gene23986.t1 AT1G04050 31.977 172 95 7 228 380 280 448 1.29e-11 68.6
MS.gene23986.t1 AT1G04050 54.416 351 150 6 406 752 385 729 1.01e-125 392
MS.gene23986.t1 AT1G04050 31.977 172 95 7 228 380 280 448 1.29e-11 68.6
MS.gene23986.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 1.99e-28 123
MS.gene23986.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 1.99e-28 123
MS.gene23986.t1 AT2G23740 38.947 190 100 6 562 744 1200 1380 1.99e-28 123
MS.gene23986.t1 AT2G23740 38.947 190 100 6 562 744 1193 1373 2.04e-28 123
MS.gene23986.t1 AT1G73100 30.816 331 160 13 430 742 386 665 2.03e-27 119
MS.gene23986.t1 AT2G35160 29.206 315 152 11 430 741 543 789 1.60e-26 116
MS.gene23986.t1 AT2G35160 29.206 315 152 11 430 741 543 789 1.60e-26 116
MS.gene23986.t1 AT2G35160 29.206 315 152 11 430 741 543 789 1.60e-26 116
MS.gene23986.t1 AT2G35160 29.206 315 152 11 430 741 543 789 1.60e-26 116
MS.gene23986.t1 AT2G35160 29.206 315 152 11 430 741 507 753 1.70e-26 116
MS.gene23986.t1 AT2G22740 28.267 329 169 10 430 742 509 786 3.58e-25 112
MS.gene23986.t1 AT2G22740 28.267 329 169 10 430 742 509 786 3.58e-25 112
MS.gene23986.t1 AT5G04940 27.795 331 169 12 430 742 388 666 3.74e-24 108
MS.gene23986.t1 AT5G04940 27.795 331 169 12 430 742 388 666 3.74e-24 108
MS.gene23986.t1 AT3G03750 34.392 189 101 8 564 741 169 345 5.55e-22 99.0
MS.gene23986.t1 AT1G17770 32.836 201 117 7 558 742 491 689 1.04e-21 100
MS.gene23986.t1 AT2G23740 43.220 118 63 3 562 677 1200 1315 1.21e-20 98.2
MS.gene23986.t1 AT2G23740 43.220 118 63 3 562 677 1200 1315 1.21e-20 98.2
MS.gene23986.t1 AT4G13460 26.791 321 154 15 421 720 378 638 3.75e-18 89.4
MS.gene23986.t1 AT4G13460 26.791 321 154 15 421 720 378 638 3.75e-18 89.4
MS.gene23986.t1 AT2G33290 25.484 310 154 11 430 720 388 639 5.80e-16 82.4
MS.gene23986.t1 AT2G33290 25.484 310 154 11 430 720 388 639 5.80e-16 82.4
MS.gene23986.t1 AT2G33290 25.484 310 154 11 430 720 388 639 5.80e-16 82.4
MS.gene23986.t1 AT2G33290 25.484 310 154 11 430 720 388 639 5.80e-16 82.4
MS.gene23986.t1 AT2G24740 29.787 188 114 6 571 742 566 751 9.22e-15 79.0
MS.gene23986.t1 AT1G77300 28.311 219 111 10 535 742 980 1163 1.23e-14 79.0
MS.gene23986.t1 AT1G77300 28.311 219 111 10 535 742 980 1163 1.90e-14 78.2
MS.gene23986.t1 AT1G76710 28.492 179 96 6 569 741 72 224 3.72e-14 76.3
MS.gene23986.t1 AT1G76710 28.492 179 96 6 569 741 72 224 3.72e-14 76.3
MS.gene23986.t1 AT1G76710 28.492 179 96 6 569 741 72 224 5.11e-14 75.9
MS.gene23986.t1 AT1G76710 28.492 179 96 6 569 741 72 224 5.68e-14 75.9
MS.gene23986.t1 AT3G03750 28.947 190 94 7 564 741 169 329 3.90e-13 72.0

Find 179 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGCGCTGCTATGTTTC+TGG 0.156141 1.3:-49013843 None:intergenic
CCTCTCATGCAACTCTTTAA+TGG 0.157207 1.3:-49012457 None:intergenic
CTATGTTTCTGGTGGTAAAA+AGG 0.198580 1.3:-49013832 None:intergenic
GAGCTGCAGCTCAGCTCTTC+AGG 0.210314 1.3:+49011122 MS.gene23986:CDS
ACTACTAAACTGAGTGAATT+TGG 0.220484 1.3:-49011588 None:intergenic
AGAGAACTATAGAGCTTTAT+TGG 0.221245 1.3:+49009662 MS.gene23986:CDS
TCATCAACGGGCTCAGATTT+AGG 0.222684 1.3:-49010238 None:intergenic
ACATTTCTCTATCTCGTATT+GGG 0.243654 1.3:+49011787 MS.gene23986:CDS
AACATGAAATGTGCTGAAAA+TGG 0.265651 1.3:+49012480 MS.gene23986:CDS
CTCCAGGCAATGACAGAGTT+TGG 0.318416 1.3:+49009561 MS.gene23986:CDS
CCACTTCTTTACGTGTGTTA+TGG 0.320200 1.3:-49011047 None:intergenic
TCTGGACACTCAATTTGAAT+TGG 0.327457 1.3:-49013672 None:intergenic
GAATAGCGCCTTAAGCTTGA+TGG 0.331994 1.3:-49010967 None:intergenic
CTCTGATGGGCTGGTGAAAA+GGG 0.332393 1.3:-49011471 None:intergenic
AACATTTCTCTATCTCGTAT+TGG 0.338243 1.3:+49011786 MS.gene23986:CDS
TGTGCCTGTACATATAAAAC+TGG 0.340913 1.3:+49011864 MS.gene23986:CDS
TTGAAAAGATTGAGATTAAG+AGG 0.343197 1.3:+49009998 MS.gene23986:CDS
CATCTCGGAACACAAGGTTT+TGG 0.345064 1.3:-49011755 None:intergenic
CTCTTCAAGTGTCCTTTACA+TGG 0.346446 1.3:-49012032 None:intergenic
CATTGTGGGCAGTAAGGATT+TGG 0.349231 1.3:+49011377 MS.gene23986:CDS
TACAGCTCAAGGCCTAATTA+AGG 0.350606 1.3:+49011902 MS.gene23986:CDS
GTCAAAGAGTGATGGTTGTT+TGG 0.362693 1.3:+49012007 MS.gene23986:CDS
CTGGACACTCAATTTGAATT+GGG 0.363904 1.3:-49013671 None:intergenic
ACTAGGTCTGCGTTAATTGC+TGG 0.366002 1.3:+49014619 MS.gene23986:CDS
GAAAGTTTATTAAAGAATGT+TGG 0.367343 1.3:+49012054 MS.gene23986:CDS
TGCTTAGATGCAGCGTCCTT+TGG 0.374054 1.3:+49012573 MS.gene23986:CDS
ATGGTGTTTCTGCAGGATTA+TGG 0.382711 1.3:+49014221 MS.gene23986:intron
CACTCCGCATCCAGTAGAAC+TGG 0.383967 1.3:-49012516 None:intergenic
TGAGTAGGCATGCGGAAATC+TGG 0.394448 1.3:-49011147 None:intergenic
GCTCTGATGGGCTGGTGAAA+AGG 0.396124 1.3:-49011472 None:intergenic
ACCAGCCCATCAGAGCAGTT+TGG 0.397557 1.3:+49011479 MS.gene23986:CDS
GATGACACTGCGTTGTTTCG+AGG 0.400594 1.3:-49010115 None:intergenic
TCCAGGCAATGACAGAGTTT+GGG 0.403416 1.3:+49009562 MS.gene23986:CDS
TACTGGTTTCCGAGATGAAC+AGG 0.403963 1.3:+49011511 MS.gene23986:CDS
TCTATGTGAGACTTCTTCAA+TGG 0.406075 1.3:-49010055 None:intergenic
CAGATGTTCTGATGCAAACT+TGG 0.408144 1.3:+49013641 MS.gene23986:intron
AAGAGAATAATCAAATTTCA+TGG 0.413531 1.3:+49011682 MS.gene23986:CDS
GCATTTGTGTGTGAGTTTGC+TGG 0.417110 1.3:+49012423 MS.gene23986:CDS
CAGCGCATGAAGAGCTCACT+TGG 0.418578 1.3:+49013855 MS.gene23986:CDS
TCACACACAAATGCTCCTTT+TGG 0.419691 1.3:-49012414 None:intergenic
ATCTACTTACCCAGTTCTAC+TGG 0.430711 1.3:+49012506 MS.gene23986:CDS
TGGAATAACATACAACTTGC+AGG 0.432287 1.3:+49012124 MS.gene23986:CDS
AGTCTACAGAAGATCGTATA+AGG 0.434173 1.3:+49011625 MS.gene23986:CDS
TCCTGAAGCAAAAGTGAAAC+GGG 0.434933 1.3:+49009587 MS.gene23986:CDS
CTATGTGAGACTTCTTCAAT+GGG 0.437903 1.3:-49010054 None:intergenic
CATCATCCAAACTGCTCTGA+TGG 0.438786 1.3:-49011485 None:intergenic
ATGGGGACTTCGTACCTTAG+AGG 0.440946 1.3:+49012386 MS.gene23986:CDS
ATGCAGAACCATCAAGCTTA+AGG 0.443752 1.3:+49010959 MS.gene23986:intron
CAAGCTTAAGGCGCTATTCA+AGG 0.444240 1.3:+49010971 MS.gene23986:CDS
TCCAAACTGCTCTGATGGGC+TGG 0.448015 1.3:-49011480 None:intergenic
CAGTTTGGATGATGCTGTAC+TGG 0.448999 1.3:+49011494 MS.gene23986:CDS
GAGGACAGTTGTTCCTGTAT+AGG 0.451056 1.3:+49011813 MS.gene23986:CDS
ACGGGTTCTCACTCATCAAA+TGG 0.451201 1.3:+49011402 MS.gene23986:CDS
TCCTTACTGCCCACAATGGC+GGG 0.451219 1.3:-49011372 None:intergenic
TCATAATCTTCCTCATCAAC+GGG 0.455912 1.3:-49010250 None:intergenic
TCCCAAACTCTGTCATTGCC+TGG 0.460190 1.3:-49009563 None:intergenic
GATGGCACACCCGCCATTGT+GGG 0.460269 1.3:+49011363 MS.gene23986:CDS
GCCATCAACCTCAGATTCCT+TGG 0.460375 1.3:-49011346 None:intergenic
AACATTTAACGGAGCATCCT+CGG 0.461944 1.3:-49009960 None:intergenic
AGCTGCAGCTCAGCTCTTCA+GGG 0.466371 1.3:+49011123 MS.gene23986:CDS
CAGTAAAAGCAATGCTGTTG+AGG 0.466634 1.3:-49011963 None:intergenic
TTGGATGCTATATTTGAAGA+AGG 0.467640 1.3:+49009681 MS.gene23986:CDS
TCCGAGATGAACAGGACAAT+TGG 0.468652 1.3:+49011519 MS.gene23986:CDS
CAAGATGCAACTTCCTATAC+AGG 0.475226 1.3:-49011826 None:intergenic
TAAGAAGCATGCGGTGATGC+AGG 0.478397 1.3:-49010202 None:intergenic
TGGGGTATGTAGTTGAAAGG+TGG 0.478541 1.3:-49011735 None:intergenic
TTTGGAGACACGGGATCCTC+CGG 0.478825 1.3:-49011570 None:intergenic
TGTGATAGCCTCTTCAGCTC+AGG 0.484761 1.3:+49011080 MS.gene23986:CDS
AGAACAACTTCTTAAGATGA+TGG 0.486990 1.3:+49011170 MS.gene23986:CDS
ACAGTTTGACAGGTTGATCA+TGG 0.487440 1.3:-49014259 None:intergenic
CGAGCAGATTCAACATTTAA+CGG 0.488022 1.3:-49009971 None:intergenic
TTAAGAAGTTGTTCTTGAGT+AGG 0.488882 1.3:-49011162 None:intergenic
ACCCGCCATTGTGGGCAGTA+AGG 0.490950 1.3:+49011371 MS.gene23986:CDS
ACATGATAGTAGTAACGATC+TGG 0.492019 1.3:-49013690 None:intergenic
ATGGGGAAGAAGCTGAGCTA+GGG 0.492408 1.3:-49010036 None:intergenic
GGAAGAAGAGATGGAGGCCG+AGG 0.496811 1.3:+49009943 MS.gene23986:intron
TACTTCTCCCTGAGCTGAAG+AGG 0.498970 1.3:-49011088 None:intergenic
GAAGAAGTCTCACATAGAAA+AGG 0.499568 1.3:+49010060 MS.gene23986:CDS
TTCCTGAAGCAAAAGTGAAA+CGG 0.501547 1.3:+49009586 MS.gene23986:CDS
GATGTTAGTGACCTTACAAA+AGG 0.503486 1.3:+49011657 MS.gene23986:CDS
TGCGAGATGCTAGTTATGAC+AGG 0.503811 1.3:+49010170 MS.gene23986:CDS
AATGGGGAAGAAGCTGAGCT+AGG 0.506879 1.3:-49010037 None:intergenic
TGATGGCACACCCGCCATTG+TGG 0.514482 1.3:+49011362 MS.gene23986:CDS
ACATGAAATGTGCTGAAAAT+GGG 0.514519 1.3:+49012481 MS.gene23986:CDS
CTCATAATCTTCCTCATCAA+CGG 0.516381 1.3:-49010251 None:intergenic
GGCAGTAAGGATTTGGACAC+GGG 0.517393 1.3:+49011384 MS.gene23986:CDS
TTGCACTGGAACAGTTTGAC+AGG 0.517685 1.3:-49014269 None:intergenic
GAAAAGGACACAGCACTTGA+AGG 0.519631 1.3:+49010076 MS.gene23986:CDS
TCTATCTCGTATTGGGGCTG+AGG 0.521876 1.3:+49011794 MS.gene23986:CDS
TTGCTAGATTTATCAATCAC+AGG 0.526124 1.3:+49012601 MS.gene23986:CDS
TCACTCTTTGACCTTTCAAG+TGG 0.526254 1.3:-49011996 None:intergenic
AGTTCTACTGGATGCGGAGT+GGG 0.529585 1.3:+49012518 MS.gene23986:CDS
CACATCCGAAGGAAAAGGAT+GGG 0.533153 1.3:+49012368 MS.gene23986:CDS
AATGTGGCAGTAAGTTCTGC+AGG 0.533366 1.3:+49014291 MS.gene23986:CDS
ACTTACTGCCACATTTGCAC+TGG 0.535307 1.3:-49014283 None:intergenic
ATCATCCAAACTGCTCTGAT+GGG 0.536390 1.3:-49011484 None:intergenic
ACCAATTGTCCTGTTCATCT+CGG 0.540540 1.3:-49011520 None:intergenic
GCAAAGATTGTCCACTTGAA+AGG 0.541466 1.3:+49011985 MS.gene23986:CDS
TGCATTCTAACATCACTTTG+TGG 0.547428 1.3:-49011546 None:intergenic
CAGAAGCATCTCGGAACACA+AGG 0.547625 1.3:-49011761 None:intergenic
TTACGTGTGTTATGGTGTGA+TGG 0.548330 1.3:-49011039 None:intergenic
CATTTCTCTATCTCGTATTG+GGG 0.549601 1.3:+49011788 MS.gene23986:CDS
AAACTCTGTCATTGCCTGGA+GGG 0.550126 1.3:-49009559 None:intergenic
ATCCTTACTGCCCACAATGG+CGG 0.550791 1.3:-49011373 None:intergenic
TCACATCCGAAGGAAAAGGA+TGG 0.551509 1.3:+49012367 MS.gene23986:CDS
AGGCGCTATTCAAGGAAGAA+TGG 0.557745 1.3:+49010979 MS.gene23986:CDS
AGCAATTAACGCAGACCTAG+TGG 0.561560 1.3:-49014617 None:intergenic
CCATTAAAGAGTTGCATGAG+AGG 0.561929 1.3:+49012457 MS.gene23986:CDS
TGAGCGGCGTCCCCTTGCAA+TGG 0.562017 1.3:+49010270 MS.gene23986:CDS
GGTATGTAGTTGAAAGGTGG+TGG 0.563966 1.3:-49011732 None:intergenic
GTTATGGTGTGATGGTGTCA+TGG 0.564381 1.3:-49011031 None:intergenic
AAGTGATGTTAGAATGCAGC+CGG 0.565115 1.3:+49011551 MS.gene23986:CDS
TTATACGATCTTCTGTAGAC+TGG 0.565319 1.3:-49011623 None:intergenic
ATATAACCAGGAAGAAGAGA+TGG 0.566148 1.3:+49009934 MS.gene23986:intron
AGAGAATAATCAAATTTCAT+GGG 0.566667 1.3:+49011683 MS.gene23986:CDS
AGTAAAAGCAATGCTGTTGA+GGG 0.566678 1.3:-49011962 None:intergenic
GTGATGGTGTCATGGAGACA+TGG 0.568469 1.3:-49011023 None:intergenic
ACCTTAGAGGAACTGCCAAA+AGG 0.569461 1.3:+49012399 MS.gene23986:CDS
TGTTGGAGCAAATGTGGCTG+TGG 0.569633 1.3:+49012071 MS.gene23986:CDS
GTGCCTGTACATATAAAACT+GGG 0.569930 1.3:+49011865 MS.gene23986:CDS
AAATTTGCATATACAGCTCA+AGG 0.570666 1.3:+49011891 MS.gene23986:CDS
CAGTGTCATCTGATGTGAAT+GGG 0.571710 1.3:+49010128 MS.gene23986:CDS
TCTGCCTTGGTTTCACCTCG+AGG 0.574171 1.3:+49011447 MS.gene23986:CDS
ATCAAGCATAGATGTGTCCA+AGG 0.576306 1.3:+49011329 MS.gene23986:CDS
TAAATCTGAGCCCGTTGATG+AGG 0.579697 1.3:+49010240 MS.gene23986:CDS
TCTGATGGGCTGGTGAAAAG+GGG 0.580258 1.3:-49011470 None:intergenic
CCATAACACACGTAAAGAAG+TGG 0.582122 1.3:+49011047 MS.gene23986:CDS
AAATGTTAACAGAAGCATCT+CGG 0.583016 1.3:-49011770 None:intergenic
GTGGGATTCAACATTTGTGA+AGG 0.586586 1.3:+49012536 MS.gene23986:CDS
CTGAGTGAATTTGGAGACAC+GGG 0.587085 1.3:-49011579 None:intergenic
GTGATAGCCTCTTCAGCTCA+GGG 0.595212 1.3:+49011081 MS.gene23986:CDS
AAATCTAGCAATGTTGCCAA+AGG 0.600969 1.3:-49012589 None:intergenic
GGGCAGTAAGGATTTGGACA+CGG 0.606855 1.3:+49011383 MS.gene23986:CDS
GTCATAACTAGCATCTCGCA+TGG 0.608733 1.3:-49010167 None:intergenic
TTACCCAGTTCTACTGGATG+CGG 0.610406 1.3:+49012512 MS.gene23986:CDS
AGATATATGTGATTGCATGT+TGG 0.610959 1.3:+49011257 MS.gene23986:CDS
TCAAACGATAACTCACAAGA+AGG 0.613211 1.3:+49011294 MS.gene23986:CDS
TCCAAGGAATCTGAGGTTGA+TGG 0.617576 1.3:+49011345 MS.gene23986:CDS
CTTGAAAGGTCAAAGAGTGA+TGG 0.617940 1.3:+49011999 MS.gene23986:CDS
GCAGTGTCATCTGATGTGAA+TGG 0.620539 1.3:+49010127 MS.gene23986:CDS
TCATAACTAGCATCTCGCAT+GGG 0.621862 1.3:-49010166 None:intergenic
AGATGTGTCCAAGGAATCTG+AGG 0.622003 1.3:+49011338 MS.gene23986:CDS
ACATCCGAAGGAAAAGGATG+GGG 0.623345 1.3:+49012369 MS.gene23986:CDS
GGTTGTTTGGAACCATGTAA+AGG 0.624624 1.3:+49012020 MS.gene23986:CDS
CAGTTCTACTGGATGCGGAG+TGG 0.627446 1.3:+49012517 MS.gene23986:CDS
AAACTGTTCCAGTGCAAATG+TGG 0.628078 1.3:+49014275 MS.gene23986:CDS
CAAATCCTTACTGCCCACAA+TGG 0.629154 1.3:-49011376 None:intergenic
GCTGGTGAAAAGGGGCCTCG+AGG 0.629263 1.3:-49011462 None:intergenic
AGTTGTATGTTATTCCACGC+TGG 0.629403 1.3:-49012118 None:intergenic
AAAGAATGTTGGAGCAAATG+TGG 0.629844 1.3:+49012065 MS.gene23986:CDS
GCGAGATGCTAGTTATGACA+GGG 0.630984 1.3:+49010171 MS.gene23986:CDS
ATGCGCTGCTATGTTTCTGG+TGG 0.632146 1.3:-49013840 None:intergenic
TGGGGAAGAAGCTGAGCTAG+GGG 0.632319 1.3:-49010035 None:intergenic
AACGGGCTCAGATTTAGGTA+CGG 0.633960 1.3:-49010233 None:intergenic
TCTTCTGTAGACTGGTGATG+TGG 0.636889 1.3:-49011615 None:intergenic
CAAACTCTGTCATTGCCTGG+AGG 0.639593 1.3:-49009560 None:intergenic
ACTGATTATAAATGGCGCCA+AGG 0.643115 1.3:+49009514 None:intergenic
GTTGTTCTTGAGTAGGCATG+CGG 0.647576 1.3:-49011155 None:intergenic
AGCGCATGAAGAGCTCACTT+GGG 0.648600 1.3:+49013856 MS.gene23986:CDS
AATGGTGTTACTGAAAAGCA+AGG 0.651736 1.3:+49010997 MS.gene23986:CDS
TGTCATCTGATGTGAATGGG+AGG 0.652442 1.3:+49010131 MS.gene23986:CDS
TGATGGTGTCATGGAGACAT+GGG 0.657309 1.3:-49011022 None:intergenic
ACTGAGTGAATTTGGAGACA+CGG 0.658366 1.3:-49011580 None:intergenic
ACTCCGCATCCAGTAGAACT+GGG 0.662392 1.3:-49012515 None:intergenic
GCCTGTACATATAAAACTGG+GGG 0.669381 1.3:+49011867 MS.gene23986:CDS
TAACCAGGAAGAAGAGATGG+AGG 0.670725 1.3:+49009937 MS.gene23986:intron
GTTGGAGCAAATGTGGCTGT+GGG 0.672821 1.3:+49012072 MS.gene23986:CDS
TGCCTGTACATATAAAACTG+GGG 0.672868 1.3:+49011866 MS.gene23986:CDS
ACAACTTCTTAAGATGATGG+AGG 0.672893 1.3:+49011173 MS.gene23986:CDS
TGATGTTAGAATGCAGCCGG+AGG 0.679721 1.3:+49011554 MS.gene23986:CDS
TGTGGCTGTGGGAAACAATG+TGG 0.681976 1.3:+49012083 MS.gene23986:CDS
GTCATCTGATGTGAATGGGA+GGG 0.682522 1.3:+49010132 MS.gene23986:CDS
AAGGACACAGCACTTGAAGG+CGG 0.696062 1.3:+49010079 MS.gene23986:CDS
GGAAATCGCGTTATCCAGCG+TGG 0.696912 1.3:+49012104 MS.gene23986:CDS
GTCAATTCATAAGAAGCATG+CGG 0.698287 1.3:-49010211 None:intergenic
GGGGCCTCGAGGTGAAACCA+AGG 0.711820 1.3:-49011451 None:intergenic
CGAGATGCTAGTTATGACAG+GGG 0.714402 1.3:+49010172 MS.gene23986:CDS
TTGATGAGGAAGATTATGAG+CGG 0.719615 1.3:+49010254 MS.gene23986:CDS
TATGTGAGACTTCTTCAATG+GGG 0.720248 1.3:-49010053 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAATTTTTAAATTT+AGG + chr1.3:49012338-49012357 MS.gene23986:intron 0.0%
!! AAAAGAGTAAAAATTAAATA+CGG - chr1.3:49014587-49014606 None:intergenic 10.0%
!! AAGAAAAAAAAAAAGATATT+TGG + chr1.3:49012939-49012958 MS.gene23986:intron 10.0%
!! CATGTATTTATAATATTATA+TGG + chr1.3:49012985-49013004 MS.gene23986:intron 10.0%
!! TAAAAATTATGAATCAATAT+TGG - chr1.3:49012196-49012215 None:intergenic 10.0%
!! ATAACATTATACTAATACAT+AGG - chr1.3:49012283-49012302 None:intergenic 15.0%
!! ATGTATTATTGTATTATTTG+TGG + chr1.3:49010498-49010517 MS.gene23986:intron 15.0%
!! TGTTGAAAAAGAAAAATAAT+TGG - chr1.3:49010863-49010882 None:intergenic 15.0%
!! TTAAAATAATTGGTATTAAG+TGG - chr1.3:49013247-49013266 None:intergenic 15.0%
!!! AAAACATTTTAAAAATGTAC+CGG - chr1.3:49012309-49012328 None:intergenic 15.0%
!!! AAAATTTTATACAATATAGG+AGG - chr1.3:49013935-49013954 None:intergenic 15.0%
!!! ATAAAATTTTCACTTCTTTA+CGG + chr1.3:49013945-49013964 MS.gene23986:intron 15.0%
!!! GTGAAAATTTTATACAATAT+AGG - chr1.3:49013938-49013957 None:intergenic 15.0%
!! AAAAAAAAAAGATATTTGGC+TGG + chr1.3:49012943-49012962 MS.gene23986:intron 20.0%
!! AAAAAAAAAGATATTTGGCT+GGG + chr1.3:49012944-49012963 MS.gene23986:intron 20.0%
!! AAGAGAATAATCAAATTTCA+TGG + chr1.3:49011682-49011701 MS.gene23986:CDS 20.0%
!! AGAGAATAATCAAATTTCAT+GGG + chr1.3:49011683-49011702 MS.gene23986:CDS 20.0%
!! ATTATTGTATTATTTGTGGA+TGG + chr1.3:49010502-49010521 MS.gene23986:intron 20.0%
!! ATTCCCATCTTTATAAAATT+GGG + chr1.3:49013378-49013397 MS.gene23986:intron 20.0%
!! GAAAGTTTATTAAAGAATGT+TGG + chr1.3:49012054-49012073 MS.gene23986:CDS 20.0%
!! GTTCAAACGATTAAAATAAT+TGG - chr1.3:49013257-49013276 None:intergenic 20.0%
!! TATTCCCATCTTTATAAAAT+TGG + chr1.3:49013377-49013396 MS.gene23986:intron 20.0%
!!! AAACATTTTAAAAATGTACC+GGG - chr1.3:49012308-49012327 None:intergenic 20.0%
!!! AAACCCAATTTTATAAAGAT+GGG - chr1.3:49013384-49013403 None:intergenic 20.0%
!!! ACTTATTTTCTAGTTTTTCA+TGG + chr1.3:49014041-49014060 MS.gene23986:intron 20.0%
!!! AGAAAAATTTCTTTTCTCTT+CGG - chr1.3:49013087-49013106 None:intergenic 20.0%
!!! AGTTTTTATCAAACAACTTA+AGG - chr1.3:49009626-49009645 None:intergenic 20.0%
!!! GTAAGTTTTGTTATGTAATA+TGG + chr1.3:49013878-49013897 MS.gene23986:intron 20.0%
!!! TAAACAGAAGCTTATTTTTA+TGG + chr1.3:49014202-49014221 MS.gene23986:intron 20.0%
!!! TAAACCCAATTTTATAAAGA+TGG - chr1.3:49013385-49013404 None:intergenic 20.0%
!!! TAACATTCATAATTTTCTGT+TGG + chr1.3:49009846-49009865 MS.gene23986:intron 20.0%
!!! TTAAGTTGTTTGATAAAAAC+TGG + chr1.3:49009625-49009644 MS.gene23986:CDS 20.0%
!!! TTTCCTTAGTTTGAATTTTA+GGG - chr1.3:49012662-49012681 None:intergenic 20.0%
!!! TTTTCCTTAGTTTGAATTTT+AGG - chr1.3:49012663-49012682 None:intergenic 20.0%
! AAGAAATGCTTATGTACTTT+GGG + chr1.3:49014074-49014093 MS.gene23986:intron 25.0%
! AAGGATATTTAAACAGTTTG+GGG - chr1.3:49013305-49013324 None:intergenic 25.0%
! ACAATAACTTGAGTTTAATG+TGG + chr1.3:49013014-49013033 MS.gene23986:intron 25.0%
! ACGTTATTAAACAATCCAAA+AGG - chr1.3:49014479-49014498 None:intergenic 25.0%
! AGAAACTCATAAATCAGTAA+AGG - chr1.3:49010765-49010784 None:intergenic 25.0%
! AGTAAACTACAAAAATGAAC+AGG - chr1.3:49014142-49014161 None:intergenic 25.0%
! ATTAGTATAATGTTATTCCC+CGG + chr1.3:49012287-49012306 MS.gene23986:intron 25.0%
! ATTATTACTTATCTCATAGC+TGG + chr1.3:49013442-49013461 MS.gene23986:intron 25.0%
! CAAGGATATTTAAACAGTTT+GGG - chr1.3:49013306-49013325 None:intergenic 25.0%
! CAGTTGGGATAATTTATTTA+TGG + chr1.3:49014014-49014033 MS.gene23986:intron 25.0%
! CCAAAAATTCTTCCTTAATT+AGG - chr1.3:49011917-49011936 None:intergenic 25.0%
! TATACTAATACATAGGAACT+TGG - chr1.3:49012276-49012295 None:intergenic 25.0%
! TCAAGGATATTTAAACAGTT+TGG - chr1.3:49013307-49013326 None:intergenic 25.0%
! TTGAAAAGATTGAGATTAAG+AGG + chr1.3:49009998-49010017 MS.gene23986:CDS 25.0%
! TTTGACATCTTAGTTGTAAT+TGG + chr1.3:49010341-49010360 MS.gene23986:intron 25.0%
!! AAAATGTCTTTGTTTACTAG+TGG - chr1.3:49012171-49012190 None:intergenic 25.0%
!! AATTTTTACTCTTTTGATGC+AGG + chr1.3:49014592-49014611 MS.gene23986:intron 25.0%
!! ATTTACTTTGTTGTATCACT+TGG + chr1.3:49014438-49014457 MS.gene23986:intron 25.0%
!! ATTTTTCCGACAGAAAAATT+TGG - chr1.3:49011231-49011250 None:intergenic 25.0%
!! CCTAATTAAGGAAGAATTTT+TGG + chr1.3:49011914-49011933 MS.gene23986:CDS 25.0%
!! CTTAATCTCAATCTTTTCAA+AGG - chr1.3:49009998-49010017 None:intergenic 25.0%
!! TTATTCTTCTTTTCAAACCA+TGG + chr1.3:49010422-49010441 MS.gene23986:intron 25.0%
!! TTTACTTTGTTGTATCACTT+GGG + chr1.3:49014439-49014458 MS.gene23986:intron 25.0%
!! TTTTTCCGACAGAAAAATTT+GGG - chr1.3:49011230-49011249 None:intergenic 25.0%
!!! AACATTTTAAAAATGTACCG+GGG - chr1.3:49012307-49012326 None:intergenic 25.0%
!!! ATTGTTGGATTTTATTTGAC+AGG + chr1.3:49009783-49009802 MS.gene23986:intron 25.0%
!!! TGAAGGTTTTTTGGTTATTT+AGG + chr1.3:49013593-49013612 MS.gene23986:intron 25.0%
AAAAAATGGAGGACATAGTT+GGG + chr1.3:49012765-49012784 MS.gene23986:intron 30.0%
AAATAATTGGTCAGATTCAG+AGG - chr1.3:49010850-49010869 None:intergenic 30.0%
AAATTTGCATATACAGCTCA+AGG + chr1.3:49011891-49011910 MS.gene23986:CDS 30.0%
AACAAACGATTAACACAGTT+GGG + chr1.3:49013999-49014018 MS.gene23986:intron 30.0%
AACATGAAATGTGCTGAAAA+TGG + chr1.3:49012480-49012499 MS.gene23986:CDS 30.0%
AACATGATGCAATTATGCAA+TGG - chr1.3:49010670-49010689 None:intergenic 30.0%
AACATTTCTCTATCTCGTAT+TGG + chr1.3:49011786-49011805 MS.gene23986:CDS 30.0%
ACAATTGATATCCGGAAAAA+TGG + chr1.3:49012703-49012722 MS.gene23986:intron 30.0%
ACATGAAATGTGCTGAAAAT+GGG + chr1.3:49012481-49012500 MS.gene23986:CDS 30.0%
ACATTTAGCAAAACCATAGT+TGG - chr1.3:49010482-49010501 None:intergenic 30.0%
ACATTTCTCTATCTCGTATT+GGG + chr1.3:49011787-49011806 MS.gene23986:CDS 30.0%
ACTAAGGAAAACAGAGAAAT+AGG + chr1.3:49012672-49012691 MS.gene23986:intron 30.0%
ACTACTAAACTGAGTGAATT+TGG - chr1.3:49011591-49011610 None:intergenic 30.0%
AGAACAACTTCTTAAGATGA+TGG + chr1.3:49011170-49011189 MS.gene23986:CDS 30.0%
AGATATATGTGATTGCATGT+TGG + chr1.3:49011257-49011276 MS.gene23986:CDS 30.0%
AGGACATAACAATTGATATC+CGG + chr1.3:49012695-49012714 MS.gene23986:intron 30.0%
AGGCAGAAAAAGAATTAACT+TGG - chr1.3:49011434-49011453 None:intergenic 30.0%
AGTTTGCATAAGATACTCTA+TGG + chr1.3:49010789-49010808 MS.gene23986:intron 30.0%
ATTTCTCACCTATTGTTTCA+AGG + chr1.3:49012630-49012649 MS.gene23986:intron 30.0%
CAAGAAATGCTTATGTACTT+TGG + chr1.3:49014073-49014092 MS.gene23986:intron 30.0%
CAATTGATATCCGGAAAAAT+GGG + chr1.3:49012704-49012723 MS.gene23986:intron 30.0%
CAGATTAGTATAACAACAGA+AGG - chr1.3:49013760-49013779 None:intergenic 30.0%
CATATAGTAAGGTTATACTG+AGG + chr1.3:49014109-49014128 MS.gene23986:intron 30.0%
CATTTAGCAAAACCATAGTT+GGG - chr1.3:49010481-49010500 None:intergenic 30.0%
CTCAGTATAACCTTACTATA+TGG - chr1.3:49014111-49014130 None:intergenic 30.0%
TATGATTAAATATTCCTCCC+TGG - chr1.3:49012901-49012920 None:intergenic 30.0%
TGCAAACTTACTTCTATTGT+TGG + chr1.3:49009768-49009787 MS.gene23986:intron 30.0%
TTAAGAAGTTGTTCTTGAGT+AGG - chr1.3:49011165-49011184 None:intergenic 30.0%
TTACATATGAGCATAGTTTG+AGG - chr1.3:49013217-49013236 None:intergenic 30.0%
TTAGTTGTAATTGGCATGTT+TGG + chr1.3:49010350-49010369 MS.gene23986:intron 30.0%
TTATATGAGATTGCCAACAT+AGG + chr1.3:49012866-49012885 MS.gene23986:intron 30.0%
TTGCTAGATTTATCAATCAC+AGG + chr1.3:49012601-49012620 MS.gene23986:CDS 30.0%
TTGGATGCTATATTTGAAGA+AGG + chr1.3:49009681-49009700 MS.gene23986:CDS 30.0%
! AAAAGTGCAACCAAGTAATA+GGG - chr1.3:49012792-49012811 None:intergenic 30.0%
! AGAGAACTATAGAGCTTTAT+TGG + chr1.3:49009662-49009681 MS.gene23986:CDS 30.0%
! AGTTAATTCTTTTTCTGCCT+TGG + chr1.3:49011434-49011453 MS.gene23986:CDS 30.0%
! ATATTTAAACAGTTTGGGGT+AGG - chr1.3:49013301-49013320 None:intergenic 30.0%
! TATTCTCTTCTCCTTTTGTA+AGG - chr1.3:49011671-49011690 None:intergenic 30.0%
! TATTTAAACAGTTTGGGGTA+GGG - chr1.3:49013300-49013319 None:intergenic 30.0%
! TGGATTGATAGTTGTTGAAA+AGG + chr1.3:49014373-49014392 MS.gene23986:intron 30.0%
! TTCTGCATTTTCATATAACC+AGG + chr1.3:49009922-49009941 MS.gene23986:intron 30.0%
! TTGCAAAACATCAAAAGCAT+TGG - chr1.3:49013800-49013819 None:intergenic 30.0%
!! AAATGTTAACAGAAGCATCT+CGG - chr1.3:49011773-49011792 None:intergenic 30.0%
!! TATGTTTCTGGTGGTAAAAA+GGG - chr1.3:49013834-49013853 None:intergenic 30.0%
!! TATTTTTATGGTGTTTCTGC+AGG + chr1.3:49014214-49014233 MS.gene23986:intron 30.0%
!! TTGTTTTTCTTTTGTGGTTC+TGG - chr1.3:49009811-49009830 None:intergenic 30.0%
!!! ACTCTCTTGTTTTTCTTTTG+TGG - chr1.3:49009817-49009836 None:intergenic 30.0%
!!! ATGAAATTTTCTAGCTCACA+TGG + chr1.3:49013907-49013926 MS.gene23986:intron 30.0%
!!! GCAAATGTTTGAAGGTTTTT+TGG + chr1.3:49013584-49013603 MS.gene23986:intron 30.0%
!!! TGAAATTTTCTAGCTCACAT+GGG + chr1.3:49013908-49013927 MS.gene23986:intron 30.0%
AAAATGGGAGAAGACAAAGT+AGG + chr1.3:49012719-49012738 MS.gene23986:intron 35.0%
AAAGAATGTTGGAGCAAATG+TGG + chr1.3:49012065-49012084 MS.gene23986:CDS 35.0%
AAATCTAGCAATGTTGCCAA+AGG - chr1.3:49012592-49012611 None:intergenic 35.0%
AAATGCTTATGTACTTTGGG+TGG + chr1.3:49014077-49014096 MS.gene23986:intron 35.0%
AAGGAAAACAGAGAAATAGG+AGG + chr1.3:49012675-49012694 MS.gene23986:intron 35.0%
AAGGAAGGTAAATCAGATCA+AGG - chr1.3:49013324-49013343 None:intergenic 35.0%
ACATGATAGTAGTAACGATC+TGG - chr1.3:49013693-49013712 None:intergenic 35.0%
AGGACATAACCATTGATATC+CGG + chr1.3:49012742-49012761 MS.gene23986:intron 35.0%
AGTAAAAGCAATGCTGTTGA+GGG - chr1.3:49011965-49011984 None:intergenic 35.0%
AGTCTACAGAAGATCGTATA+AGG + chr1.3:49011625-49011644 MS.gene23986:CDS 35.0%
ATAGTAAGGTTATACTGAGG+AGG + chr1.3:49014112-49014131 MS.gene23986:intron 35.0%
ATAGTTCATTGAATACCAGG+GGG - chr1.3:49010298-49010317 None:intergenic 35.0%
ATATAACCAGGAAGAAGAGA+TGG + chr1.3:49009934-49009953 MS.gene23986:intron 35.0%
ATATGAAGCGATCAAACAGT+AGG + chr1.3:49014315-49014334 MS.gene23986:intron 35.0%
ATGTCAAGTTATGTATCTGC+AGG + chr1.3:49012249-49012268 MS.gene23986:intron 35.0%
CATTTCTCTATCTCGTATTG+GGG + chr1.3:49011788-49011807 MS.gene23986:CDS 35.0%
CCATTGATATCCGGAAAAAA+TGG + chr1.3:49012751-49012770 MS.gene23986:intron 35.0%
CGAAAGAACGAAATTGAAAG+TGG - chr1.3:49010894-49010913 None:intergenic 35.0%
CGAGCAGATTCAACATTTAA+CGG - chr1.3:49009974-49009993 None:intergenic 35.0%
CGGAAATCATGCATCAATAA+TGG - chr1.3:49014567-49014586 None:intergenic 35.0%
CTATGTGAGACTTCTTCAAT+GGG - chr1.3:49010057-49010076 None:intergenic 35.0%
CTCATAATCTTCCTCATCAA+CGG - chr1.3:49010254-49010273 None:intergenic 35.0%
CTGGACACTCAATTTGAATT+GGG - chr1.3:49013674-49013693 None:intergenic 35.0%
CTTATAGCTTATGCTCTGAT+TGG + chr1.3:49014500-49014519 MS.gene23986:intron 35.0%
GAAAAAATGGAGGACATAGT+TGG + chr1.3:49012764-49012783 MS.gene23986:intron 35.0%
GAACAAACGATTAACACAGT+TGG + chr1.3:49013998-49014017 MS.gene23986:intron 35.0%
GAAGAAGTCTCACATAGAAA+AGG + chr1.3:49010060-49010079 MS.gene23986:CDS 35.0%
GATAGATAAACAGTTATGCG+AGG - chr1.3:49013353-49013372 None:intergenic 35.0%
GATAGTTCATTGAATACCAG+GGG - chr1.3:49010299-49010318 None:intergenic 35.0%
GATGTTAGTGACCTTACAAA+AGG + chr1.3:49011657-49011676 MS.gene23986:CDS 35.0%
GCACCCTAAAATTCAAACTA+AGG + chr1.3:49012656-49012675 MS.gene23986:intron 35.0%
GCTTGCTTGCATATTGTTTA+TGG - chr1.3:49010743-49010762 None:intergenic 35.0%
GGATAGTTCATTGAATACCA+GGG - chr1.3:49010300-49010319 None:intergenic 35.0%
GTGCCTGTACATATAAAACT+GGG + chr1.3:49011865-49011884 MS.gene23986:CDS 35.0%
TAAAAACTGGCAACTTATCG+AGG + chr1.3:49009638-49009657 MS.gene23986:CDS 35.0%
TATGTGAGACTTCTTCAATG+GGG - chr1.3:49010056-49010075 None:intergenic 35.0%
TCAAACGATAACTCACAAGA+AGG + chr1.3:49011294-49011313 MS.gene23986:CDS 35.0%
TCATAATCTTCCTCATCAAC+GGG - chr1.3:49010253-49010272 None:intergenic 35.0%
TCTATGTGAGACTTCTTCAA+TGG - chr1.3:49010058-49010077 None:intergenic 35.0%
TCTGGACACTCAATTTGAAT+TGG - chr1.3:49013675-49013694 None:intergenic 35.0%
TGAGTTTGAATCACAATCCA+TGG - chr1.3:49010442-49010461 None:intergenic 35.0%
TGCATAAGATACTCTATGGT+AGG + chr1.3:49010793-49010812 MS.gene23986:intron 35.0%
TGCATTCTAACATCACTTTG+TGG - chr1.3:49011549-49011568 None:intergenic 35.0%
TGCCTGTACATATAAAACTG+GGG + chr1.3:49011866-49011885 MS.gene23986:CDS 35.0%
TGGAATAACATACAACTTGC+AGG + chr1.3:49012124-49012143 MS.gene23986:CDS 35.0%
TGTGCCTGTACATATAAAAC+TGG + chr1.3:49011864-49011883 MS.gene23986:CDS 35.0%
TTATACGATCTTCTGTAGAC+TGG - chr1.3:49011626-49011645 None:intergenic 35.0%
TTCCTGAAGCAAAAGTGAAA+CGG + chr1.3:49009586-49009605 MS.gene23986:CDS 35.0%
TTGATATCCGGAAAAAATGG+AGG + chr1.3:49012754-49012773 MS.gene23986:intron 35.0%
TTGATGAGGAAGATTATGAG+CGG + chr1.3:49010254-49010273 MS.gene23986:CDS 35.0%
TTTCAGTTGCATGCTTCTAA+TGG + chr1.3:49013486-49013505 MS.gene23986:intron 35.0%
! AAACAGCTTTTCAGACTTCA+AGG - chr1.3:49013731-49013750 None:intergenic 35.0%
! ACAACTTCTTAAGATGATGG+AGG + chr1.3:49011173-49011192 MS.gene23986:CDS 35.0%
! ATCGACCCAAATTTTTCTGT+CGG + chr1.3:49011222-49011241 MS.gene23986:CDS 35.0%
! CTTTTCAGACTTCAAGGATT+AGG - chr1.3:49013725-49013744 None:intergenic 35.0%
! GAAAAGTGCAACCAAGTAAT+AGG - chr1.3:49012793-49012812 None:intergenic 35.0%
! GTCAATTCATAAGAAGCATG+CGG - chr1.3:49010214-49010233 None:intergenic 35.0%
! TAGGTATTTTTCACATCCGA+AGG + chr1.3:49012357-49012376 MS.gene23986:intron 35.0%
! TTTTTCACATCCGAAGGAAA+AGG + chr1.3:49012363-49012382 MS.gene23986:CDS 35.0%
!! AATGGTGTTACTGAAAAGCA+AGG + chr1.3:49010997-49011016 MS.gene23986:CDS 35.0%
!! CTATGTTTCTGGTGGTAAAA+AGG - chr1.3:49013835-49013854 None:intergenic 35.0%
!! TTTGTCTTCTCCCATTTTTC+CGG - chr1.3:49012717-49012736 None:intergenic 35.0%
!!! ACTATGTCCTCCATTTTTTC+CGG - chr1.3:49012764-49012783 None:intergenic 35.0%
!!! CCATTTTTTCCGGATATCAA+TGG - chr1.3:49012754-49012773 None:intergenic 35.0%
!!! TTTTGGGGTATGTAGTTGAA+AGG - chr1.3:49011741-49011760 None:intergenic 35.0%
AAACCTTCAAACATTTGCCG+AGG - chr1.3:49013582-49013601 None:intergenic 40.0%
AAACTGTTCCAGTGCAAATG+TGG + chr1.3:49014275-49014294 MS.gene23986:CDS 40.0%
AACATAGGAGGACATAACCA+GGG + chr1.3:49012881-49012900 MS.gene23986:intron 40.0%
AAGTGATGTTAGAATGCAGC+CGG + chr1.3:49011551-49011570 MS.gene23986:CDS 40.0%
ACATTTGCCGAGGAACTATT+TGG - chr1.3:49013572-49013591 None:intergenic 40.0%
ACCAATTGTCCTGTTCATCT+CGG - chr1.3:49011523-49011542 None:intergenic 40.0%
ACTGAGTGAATTTGGAGACA+CGG - chr1.3:49011583-49011602 None:intergenic 40.0%
ACTTCTGCCAAATAGTTCCT+CGG + chr1.3:49013562-49013581 MS.gene23986:intron 40.0%
AGTTGTATGTTATTCCACGC+TGG - chr1.3:49012121-49012140 None:intergenic 40.0%
ATAGTTGGGACCCTATTACT+TGG + chr1.3:49012779-49012798 MS.gene23986:intron 40.0%
ATCAAGCATAGATGTGTCCA+AGG + chr1.3:49011329-49011348 MS.gene23986:CDS 40.0%
ATCAATAATGGCGAAAGTGG+TGG - chr1.3:49014555-49014574 None:intergenic 40.0%
ATCATCCAAACTGCTCTGAT+GGG - chr1.3:49011487-49011506 None:intergenic 40.0%
ATCCAATTTGACATGTGTCG+TGG - chr1.3:49014399-49014418 None:intergenic 40.0%
ATCCAGCAAAAGAGTAGAAC+AGG - chr1.3:49014358-49014377 None:intergenic 40.0%
ATCTACTTACCCAGTTCTAC+TGG + chr1.3:49012506-49012525 MS.gene23986:CDS 40.0%
ATGCAGAACCATCAAGCTTA+AGG + chr1.3:49010959-49010978 MS.gene23986:intron 40.0%
CAAGATGCAACTTCCTATAC+AGG - chr1.3:49011829-49011848 None:intergenic 40.0%
CAGACTCATCTAGTGGAAAA+AGG - chr1.3:49013184-49013203 None:intergenic 40.0%
CAGATGTTCTGATGCAAACT+TGG + chr1.3:49013641-49013660 MS.gene23986:intron 40.0%
CAGTAAAAGCAATGCTGTTG+AGG - chr1.3:49011966-49011985 None:intergenic 40.0%
CAGTGTCATCTGATGTGAAT+GGG + chr1.3:49010128-49010147 MS.gene23986:CDS 40.0%
CCACTTCTTTACGTGTGTTA+TGG - chr1.3:49011050-49011069 None:intergenic 40.0%
CCATAACACACGTAAAGAAG+TGG + chr1.3:49011047-49011066 MS.gene23986:CDS 40.0%
CCATTAAAGAGTTGCATGAG+AGG + chr1.3:49012457-49012476 MS.gene23986:CDS 40.0%
CCTCTCATGCAACTCTTTAA+TGG - chr1.3:49012460-49012479 None:intergenic 40.0%
CTCACCTATTGTTTCAAGGT+TGG + chr1.3:49012634-49012653 MS.gene23986:intron 40.0%
CTCTTCAAGTGTCCTTTACA+TGG - chr1.3:49012035-49012054 None:intergenic 40.0%
CTGGGATGTTTCATCAAAGT+TGG + chr1.3:49012962-49012981 MS.gene23986:intron 40.0%
CTTGAAAGGTCAAAGAGTGA+TGG + chr1.3:49011999-49012018 MS.gene23986:CDS 40.0%
GCAAAGATTGTCCACTTGAA+AGG + chr1.3:49011985-49012004 MS.gene23986:CDS 40.0%
GCCTGTACATATAAAACTGG+GGG + chr1.3:49011867-49011886 MS.gene23986:CDS 40.0%
GGATAGCAGACCATATAGTA+AGG + chr1.3:49014098-49014117 MS.gene23986:intron 40.0%
GGGATAGTTCATTGAATACC+AGG - chr1.3:49010301-49010320 None:intergenic 40.0%
GTCAAAGAGTGATGGTTGTT+TGG + chr1.3:49012007-49012026 MS.gene23986:CDS 40.0%
GTGGGATTCAACATTTGTGA+AGG + chr1.3:49012536-49012555 MS.gene23986:CDS 40.0%
TACAGCTCAAGGCCTAATTA+AGG + chr1.3:49011902-49011921 MS.gene23986:CDS 40.0%
TATGAGATTGCCAACATAGG+AGG + chr1.3:49012869-49012888 MS.gene23986:intron 40.0%
TCACTCTTTGACCTTTCAAG+TGG - chr1.3:49011999-49012018 None:intergenic 40.0%
TCATAACTAGCATCTCGCAT+GGG - chr1.3:49010169-49010188 None:intergenic 40.0%
TCCTGAAGCAAAAGTGAAAC+GGG + chr1.3:49009587-49009606 MS.gene23986:CDS 40.0%
TGCATCAATAATGGCGAAAG+TGG - chr1.3:49014558-49014577 None:intergenic 40.0%
TTACGTGTGTTATGGTGTGA+TGG - chr1.3:49011042-49011061 None:intergenic 40.0%
TTGTCAGCTGAAACTGATAG+AGG + chr1.3:49010688-49010707 MS.gene23986:intron 40.0%
! AACATTTAACGGAGCATCCT+CGG - chr1.3:49009963-49009982 None:intergenic 40.0%
! AACCTGTTCTACTCTTTTGC+TGG + chr1.3:49014353-49014372 MS.gene23986:intron 40.0%
! ACTTTGTTGTATCACTTGGG+AGG + chr1.3:49014442-49014461 MS.gene23986:intron 40.0%
! AGAAGCATGCAACTGAAACA+AGG - chr1.3:49013484-49013503 None:intergenic 40.0%
! ATCTCGGAACACAAGGTTTT+GGG - chr1.3:49011757-49011776 None:intergenic 40.0%
! ATGGTGTTTCTGCAGGATTA+TGG + chr1.3:49014221-49014240 MS.gene23986:intron 40.0%
! GAGGCAACTTATTTGCCTTT+TGG + chr1.3:49014461-49014480 MS.gene23986:intron 40.0%
! GGTTGTTTGGAACCATGTAA+AGG + chr1.3:49012020-49012039 MS.gene23986:CDS 40.0%
! TCACACACAAATGCTCCTTT+TGG - chr1.3:49012417-49012436 None:intergenic 40.0%
! TGAAGAAGGCGATGATTTTG+AGG + chr1.3:49009695-49009714 MS.gene23986:CDS 40.0%
!! ACAGTTTGACAGGTTGATCA+TGG - chr1.3:49014262-49014281 None:intergenic 40.0%
!! GGCACTGCTTGTATTTTAGA+AGG + chr1.3:49010814-49010833 MS.gene23986:intron 40.0%
AAACTCTGTCATTGCCTGGA+GGG - chr1.3:49009562-49009581 None:intergenic 45.0%
AATGTGGCAGTAAGTTCTGC+AGG + chr1.3:49014291-49014310 MS.gene23986:CDS 45.0%
ACATCCGAAGGAAAAGGATG+GGG + chr1.3:49012369-49012388 MS.gene23986:CDS 45.0%
ACCTTAGAGGAACTGCCAAA+AGG + chr1.3:49012399-49012418 MS.gene23986:CDS 45.0%
ACGGGTTCTCACTCATCAAA+TGG + chr1.3:49011402-49011421 MS.gene23986:CDS 45.0%
ACTAGGTCTGCGTTAATTGC+TGG + chr1.3:49014619-49014638 MS.gene23986:CDS 45.0%
ACTTACTGCCACATTTGCAC+TGG - chr1.3:49014286-49014305 None:intergenic 45.0%
ACTTATCTCATAGCTGGCAG+CGG + chr1.3:49013448-49013467 MS.gene23986:intron 45.0%
AGATGTGTCCAAGGAATCTG+AGG + chr1.3:49011338-49011357 MS.gene23986:CDS 45.0%
AGCAATTAACGCAGACCTAG+TGG - chr1.3:49014620-49014639 None:intergenic 45.0%
AGGCGCTATTCAAGGAAGAA+TGG + chr1.3:49010979-49010998 MS.gene23986:CDS 45.0%
ATGGGAGAAGACAAAGTAGG+AGG + chr1.3:49012722-49012741 MS.gene23986:intron 45.0%
CAAATCCTTACTGCCCACAA+TGG - chr1.3:49011379-49011398 None:intergenic 45.0%
CAACATAGGAGGACATAACC+AGG + chr1.3:49012880-49012899 MS.gene23986:intron 45.0%
CACATCCGAAGGAAAAGGAT+GGG + chr1.3:49012368-49012387 MS.gene23986:CDS 45.0%
CACTAGATGAGTCTGCAACA+TGG + chr1.3:49013189-49013208 MS.gene23986:intron 45.0%
CAGTTATGCGAGGCAAGTTA+AGG - chr1.3:49013343-49013362 None:intergenic 45.0%
CAGTTTGGATGATGCTGTAC+TGG + chr1.3:49011494-49011513 MS.gene23986:CDS 45.0%
CATCATCCAAACTGCTCTGA+TGG - chr1.3:49011488-49011507 None:intergenic 45.0%
CATGTTGCAGACTCATCTAG+TGG - chr1.3:49013191-49013210 None:intergenic 45.0%
CATTGTGGGCAGTAAGGATT+TGG + chr1.3:49011377-49011396 MS.gene23986:CDS 45.0%
CGAGATGCTAGTTATGACAG+GGG + chr1.3:49010172-49010191 MS.gene23986:CDS 45.0%
CTGAGTGAATTTGGAGACAC+GGG - chr1.3:49011582-49011601 None:intergenic 45.0%
CTGGTTATGTCCTCCTATGT+TGG - chr1.3:49012882-49012901 None:intergenic 45.0%
GAAAAGGACACAGCACTTGA+AGG + chr1.3:49010076-49010095 MS.gene23986:CDS 45.0%
GAATAGCGCCTTAAGCTTGA+TGG - chr1.3:49010970-49010989 None:intergenic 45.0%
GAGGACAGTTGTTCCTGTAT+AGG + chr1.3:49011813-49011832 MS.gene23986:CDS 45.0%
GCAGTGTCATCTGATGTGAA+TGG + chr1.3:49010127-49010146 MS.gene23986:CDS 45.0%
GCATTTGTGTGTGAGTTTGC+TGG + chr1.3:49012423-49012442 MS.gene23986:CDS 45.0%
GCCCAATCCAAAAATAGCAG+CGG + chr1.3:49009536-49009555 MS.gene23986:CDS 45.0%
GCGAGATGCTAGTTATGACA+GGG + chr1.3:49010171-49010190 MS.gene23986:CDS 45.0%
GGTATGTAGTTGAAAGGTGG+TGG - chr1.3:49011735-49011754 None:intergenic 45.0%
GGTGCCAACCTTGAAACAAT+AGG - chr1.3:49012641-49012660 None:intergenic 45.0%
GTCATAACTAGCATCTCGCA+TGG - chr1.3:49010170-49010189 None:intergenic 45.0%
GTCATCTGATGTGAATGGGA+GGG + chr1.3:49010132-49010151 MS.gene23986:CDS 45.0%
GTTCCTCGGCAAATGTTTGA+AGG + chr1.3:49013576-49013595 MS.gene23986:intron 45.0%
GTTGTTCTTGAGTAGGCATG+CGG - chr1.3:49011158-49011177 None:intergenic 45.0%
TAAATCTGAGCCCGTTGATG+AGG + chr1.3:49010240-49010259 MS.gene23986:CDS 45.0%
TAACCAGGAAGAAGAGATGG+AGG + chr1.3:49009937-49009956 MS.gene23986:intron 45.0%
TATGCGAGGCAAGTTAAGGA+AGG - chr1.3:49013339-49013358 None:intergenic 45.0%
TCACATCCGAAGGAAAAGGA+TGG + chr1.3:49012367-49012386 MS.gene23986:CDS 45.0%
TCCAGGCAATGACAGAGTTT+GGG + chr1.3:49009562-49009581 MS.gene23986:CDS 45.0%
TCCGAGATGAACAGGACAAT+TGG + chr1.3:49011519-49011538 MS.gene23986:CDS 45.0%
TGCGAGATGCTAGTTATGAC+AGG + chr1.3:49010170-49010189 MS.gene23986:CDS 45.0%
TGGGGTATGTAGTTGAAAGG+TGG - chr1.3:49011738-49011757 None:intergenic 45.0%
TGTCATCTGATGTGAATGGG+AGG + chr1.3:49010131-49010150 MS.gene23986:CDS 45.0%
TTACCCAGTTCTACTGGATG+CGG + chr1.3:49012512-49012531 MS.gene23986:CDS 45.0%
TTCATGCGCTGCTATGTTTC+TGG - chr1.3:49013846-49013865 None:intergenic 45.0%
TTGCACTGGAACAGTTTGAC+AGG - chr1.3:49014272-49014291 None:intergenic 45.0%
! AACGGGCTCAGATTTAGGTA+CGG - chr1.3:49010236-49010255 None:intergenic 45.0%
! AAGTCCCCATCCTTTTCCTT+CGG - chr1.3:49012376-49012395 None:intergenic 45.0%
! AGTGGTGGTGTCTACATACA+TGG - chr1.3:49014540-49014559 None:intergenic 45.0%
! CAAGCTTAAGGCGCTATTCA+AGG + chr1.3:49010971-49010990 MS.gene23986:CDS 45.0%
! CATCTCGGAACACAAGGTTT+TGG - chr1.3:49011758-49011777 None:intergenic 45.0%
! CTTTTGATGCAGGATCCACT+AGG + chr1.3:49014602-49014621 MS.gene23986:intron 45.0%
! GTTATGGTGTGATGGTGTCA+TGG - chr1.3:49011034-49011053 None:intergenic 45.0%
! TCATCAACGGGCTCAGATTT+AGG - chr1.3:49010241-49010260 None:intergenic 45.0%
! TCCAAGGAATCTGAGGTTGA+TGG + chr1.3:49011345-49011364 MS.gene23986:CDS 45.0%
! TCCTTTTGGCAGTTCCTCTA+AGG - chr1.3:49012403-49012422 None:intergenic 45.0%
! TCTCGGAACACAAGGTTTTG+GGG - chr1.3:49011756-49011775 None:intergenic 45.0%
! TCTTCTGTAGACTGGTGATG+TGG - chr1.3:49011618-49011637 None:intergenic 45.0%
!! GCCCCCAGTTTTATATGTAC+AGG - chr1.3:49011871-49011890 None:intergenic 45.0%
!! TACTGGTTTCCGAGATGAAC+AGG + chr1.3:49011511-49011530 MS.gene23986:CDS 45.0%
!! TGATGGTGTCATGGAGACAT+GGG - chr1.3:49011025-49011044 None:intergenic 45.0%
!!! GCCGCTGCTATTTTTGGATT+GGG - chr1.3:49009540-49009559 None:intergenic 45.0%
!!! GCTATTTTTGGATTGGGCCT+TGG - chr1.3:49009534-49009553 None:intergenic 45.0%
!! AAACAATAAAAATAATATTA+AGG - chr1.3:49010322-49010341 None:intergenic 5.0%
!! AACAATAAAAATAATATTAA+GGG - chr1.3:49010321-49010340 None:intergenic 5.0%
AAGGACACAGCACTTGAAGG+CGG + chr1.3:49010079-49010098 MS.gene23986:CDS 50.0%
AATGGGGAAGAAGCTGAGCT+AGG - chr1.3:49010040-49010059 None:intergenic 50.0%
ACTCCGCATCCAGTAGAACT+GGG - chr1.3:49012518-49012537 None:intergenic 50.0%
AGCGCATGAAGAGCTCACTT+GGG + chr1.3:49013856-49013875 MS.gene23986:CDS 50.0%
AGCTGAAACTGATAGAGGCG+AGG + chr1.3:49010693-49010712 MS.gene23986:intron 50.0%
AGTTCTACTGGATGCGGAGT+GGG + chr1.3:49012518-49012537 MS.gene23986:CDS 50.0%
ATAGGAGGACATAACCAGGG+AGG + chr1.3:49012884-49012903 MS.gene23986:intron 50.0%
ATCCTTACTGCCCACAATGG+CGG - chr1.3:49011376-49011395 None:intergenic 50.0%
ATGGGGAAGAAGCTGAGCTA+GGG - chr1.3:49010039-49010058 None:intergenic 50.0%
ATGGGGACTTCGTACCTTAG+AGG + chr1.3:49012386-49012405 MS.gene23986:CDS 50.0%
CAAACTCTGTCATTGCCTGG+AGG - chr1.3:49009563-49009582 None:intergenic 50.0%
CTCCAGGCAATGACAGAGTT+TGG + chr1.3:49009561-49009580 MS.gene23986:CDS 50.0%
GCCATCAACCTCAGATTCCT+TGG - chr1.3:49011349-49011368 None:intergenic 50.0%
GGCAGTAAGGATTTGGACAC+GGG + chr1.3:49011384-49011403 MS.gene23986:CDS 50.0%
GGCCACGACACATGTCAAAT+TGG + chr1.3:49014394-49014413 MS.gene23986:intron 50.0%
GGGCAGTAAGGATTTGGACA+CGG + chr1.3:49011383-49011402 MS.gene23986:CDS 50.0%
GTGATAGCCTCTTCAGCTCA+GGG + chr1.3:49011081-49011100 MS.gene23986:CDS 50.0%
GTTGGAGCAAATGTGGCTGT+GGG + chr1.3:49012072-49012091 MS.gene23986:CDS 50.0%
TACTTCTCCCTGAGCTGAAG+AGG - chr1.3:49011091-49011110 None:intergenic 50.0%
TCCCAAACTCTGTCATTGCC+TGG - chr1.3:49009566-49009585 None:intergenic 50.0%
TCTATCTCGTATTGGGGCTG+AGG + chr1.3:49011794-49011813 MS.gene23986:CDS 50.0%
TGAGTAGGCATGCGGAAATC+TGG - chr1.3:49011150-49011169 None:intergenic 50.0%
TGATGTTAGAATGCAGCCGG+AGG + chr1.3:49011554-49011573 MS.gene23986:CDS 50.0%
TGCTTAGATGCAGCGTCCTT+TGG + chr1.3:49012573-49012592 MS.gene23986:CDS 50.0%
TGTGATAGCCTCTTCAGCTC+AGG + chr1.3:49011080-49011099 MS.gene23986:CDS 50.0%
TGTGGCTGTGGGAAACAATG+TGG + chr1.3:49012083-49012102 MS.gene23986:CDS 50.0%
TGTTGGAGCAAATGTGGCTG+TGG + chr1.3:49012071-49012090 MS.gene23986:CDS 50.0%
! ATTTTTACCCCTCTCCCCTG+TGG + chr1.3:49009733-49009752 MS.gene23986:intron 50.0%
! GATGACACTGCGTTGTTTCG+AGG - chr1.3:49010118-49010137 None:intergenic 50.0%
! TAAGAAGCATGCGGTGATGC+AGG - chr1.3:49010205-49010224 None:intergenic 50.0%
! TTTGGGGTAGGGAGAGATCA+AGG - chr1.3:49013289-49013308 None:intergenic 50.0%
!! ATGCGCTGCTATGTTTCTGG+TGG - chr1.3:49013843-49013862 None:intergenic 50.0%
!! CAGAAGCATCTCGGAACACA+AGG - chr1.3:49011764-49011783 None:intergenic 50.0%
!! CTCTGATGGGCTGGTGAAAA+GGG - chr1.3:49011474-49011493 None:intergenic 50.0%
!! GCCCGTTTCACTTTTGCTTC+AGG - chr1.3:49009591-49009610 None:intergenic 50.0%
!! GTGATGGTGTCATGGAGACA+TGG - chr1.3:49011026-49011045 None:intergenic 50.0%
!! TCTGATGGGCTGGTGAAAAG+GGG - chr1.3:49011473-49011492 None:intergenic 50.0%
!!! GGCCGCTGCTATTTTTGGAT+TGG - chr1.3:49009541-49009560 None:intergenic 50.0%
AAAAATAGCAGCGGCCCTCC+AGG + chr1.3:49009545-49009564 MS.gene23986:CDS 55.0%
ACCAGCCCATCAGAGCAGTT+TGG + chr1.3:49011479-49011498 MS.gene23986:CDS 55.0%
ACCAGGGGGAACCATTGCAA+GGG - chr1.3:49010284-49010303 None:intergenic 55.0%
AGCTGCAGCTCAGCTCTTCA+GGG + chr1.3:49011123-49011142 MS.gene23986:CDS 55.0%
ATCTCATAGCTGGCAGCGGA+AGG + chr1.3:49013452-49013471 MS.gene23986:intron 55.0%
CACACACACGCACCCAACTA+TGG + chr1.3:49010466-49010485 MS.gene23986:intron 55.0%
CACTCCGCATCCAGTAGAAC+TGG - chr1.3:49012519-49012538 None:intergenic 55.0%
CAGCGCATGAAGAGCTCACT+TGG + chr1.3:49013855-49013874 MS.gene23986:CDS 55.0%
CAGTTCTACTGGATGCGGAG+TGG + chr1.3:49012517-49012536 MS.gene23986:CDS 55.0%
GGAAATCGCGTTATCCAGCG+TGG + chr1.3:49012104-49012123 MS.gene23986:CDS 55.0%
TACCAGGGGGAACCATTGCA+AGG - chr1.3:49010285-49010304 None:intergenic 55.0%
TCCTTACTGCCCACAATGGC+GGG - chr1.3:49011375-49011394 None:intergenic 55.0%
TCTGCCTTGGTTTCACCTCG+AGG + chr1.3:49011447-49011466 MS.gene23986:CDS 55.0%
TGGGGAAGAAGCTGAGCTAG+GGG - chr1.3:49010038-49010057 None:intergenic 55.0%
TTTGGAGACACGGGATCCTC+CGG - chr1.3:49011573-49011592 None:intergenic 55.0%
! TCCAAACTGCTCTGATGGGC+TGG - chr1.3:49011483-49011502 None:intergenic 55.0%
!! GCTCTGATGGGCTGGTGAAA+AGG - chr1.3:49011475-49011494 None:intergenic 55.0%
!!! TGGAGGGCCGCTGCTATTTT+TGG - chr1.3:49009546-49009565 None:intergenic 55.0%
ACCCGCCATTGTGGGCAGTA+AGG + chr1.3:49011371-49011390 MS.gene23986:CDS 60.0%
CCAGGGGGAACCATTGCAAG+GGG - chr1.3:49010283-49010302 None:intergenic 60.0%
CGGCCTCCATCTCTTCTTCC+TGG - chr1.3:49009943-49009962 None:intergenic 60.0%
GAGCTGCAGCTCAGCTCTTC+AGG + chr1.3:49011122-49011141 MS.gene23986:CDS 60.0%
GATGGCACACCCGCCATTGT+GGG + chr1.3:49011363-49011382 MS.gene23986:CDS 60.0%
GGAAGAAGAGATGGAGGCCG+AGG + chr1.3:49009943-49009962 MS.gene23986:intron 60.0%
TGATGGCACACCCGCCATTG+TGG + chr1.3:49011362-49011381 MS.gene23986:CDS 60.0%
CAGTGTGTGCGCAGCCACAG+GGG - chr1.3:49009750-49009769 None:intergenic 65.0%
CCCCTTGCAATGGTTCCCCC+TGG + chr1.3:49010280-49010299 MS.gene23986:CDS 65.0%
GCAGTGTGTGCGCAGCCACA+GGG - chr1.3:49009751-49009770 None:intergenic 65.0%
GCTGGTGAAAAGGGGCCTCG+AGG - chr1.3:49011465-49011484 None:intergenic 65.0%
GGGGCCTCGAGGTGAAACCA+AGG - chr1.3:49011454-49011473 None:intergenic 65.0%
TGAGCGGCGTCCCCTTGCAA+TGG + chr1.3:49010270-49010289 MS.gene23986:CDS 65.0%
TGCAGTGTGTGCGCAGCCAC+AGG - chr1.3:49009752-49009771 None:intergenic 65.0%
GTGCGCAGCCACAGGGGAGA+GGG - chr1.3:49009744-49009763 None:intergenic 70.0%
TGCGCAGCCACAGGGGAGAG+GGG - chr1.3:49009743-49009762 None:intergenic 70.0%
TGTGCGCAGCCACAGGGGAG+AGG - chr1.3:49009745-49009764 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 49009525 49014645 49009525 ID=MS.gene23986
chr1.3 mRNA 49009525 49014645 49009525 ID=MS.gene23986.t1;Parent=MS.gene23986
chr1.3 exon 49009525 49009716 49009525 ID=MS.gene23986.t1.exon1;Parent=MS.gene23986.t1
chr1.3 CDS 49009525 49009716 49009525 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49009805 49009840 49009805 ID=MS.gene23986.t1.exon2;Parent=MS.gene23986.t1
chr1.3 CDS 49009805 49009840 49009805 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49009944 49010301 49009944 ID=MS.gene23986.t1.exon3;Parent=MS.gene23986.t1
chr1.3 CDS 49009944 49010301 49009944 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49010965 49012145 49010965 ID=MS.gene23986.t1.exon4;Parent=MS.gene23986.t1
chr1.3 CDS 49010965 49012145 49010965 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49012360 49012622 49012360 ID=MS.gene23986.t1.exon5;Parent=MS.gene23986.t1
chr1.3 CDS 49012360 49012622 49012360 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49013644 49013710 49013644 ID=MS.gene23986.t1.exon6;Parent=MS.gene23986.t1
chr1.3 CDS 49013644 49013710 49013644 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49013827 49013877 49013827 ID=MS.gene23986.t1.exon7;Parent=MS.gene23986.t1
chr1.3 CDS 49013827 49013877 49013827 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49014236 49014332 49014236 ID=MS.gene23986.t1.exon8;Parent=MS.gene23986.t1
chr1.3 CDS 49014236 49014332 49014236 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
chr1.3 exon 49014614 49014645 49014614 ID=MS.gene23986.t1.exon9;Parent=MS.gene23986.t1
chr1.3 CDS 49014614 49014645 49014614 ID=cds.MS.gene23986.t1;Parent=MS.gene23986.t1
Gene Sequence

>MS.gene23986

ATGGCGCCAAGGCCCAATCCAAAAATAGCAGCGGCCCTCCAGGCAATGACAGAGTTTGGGATTCCTGAAGCAAAAGTGAAACGGGCGCTAAAGAAACTCCTTAAGTTGTTTGATAAAAACTGGCAACTTATCGAGGAAGAGAACTATAGAGCTTTATTGGATGCTATATTTGAAGAAGGCGATGATTTTGAGGTGTTTTTCTCGCTTTATTTTTACCCCTCTCCCCTGTGGCTGCGCACACACTGCAAACTTACTTCTATTGTTGGATTTTATTTGACAGGAGCCAGAACCACAAAAGAAAAACAAGAGAGTGAATGTACGTAACATTCATAATTTTCTGTTGGCAACTTATCTGCATTACTTTATCGATTTTATGTCTATAGCTGCTGAATATGTATTCTGCATTTTCATATAACCAGGAAGAAGAGATGGAGGCCGAGGATGCTCCGTTAAATGTTGAATCTGCTCGACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGCTCAGCTTCTTCCCCATTGAAGAAGTCTCACATAGAAAAGGACACAGCACTTGAAGGCGGCTCTTCACAGCAGCCTCGAAACAACGCAGTGTCATCTGATGTGAATGGGAGGGTTGCAGCACGTCCCATGCGAGATGCTAGTTATGACAGGGGAAAGCAACCTGCATCACCGCATGCTTCTTATGAATTGACCGTACCTAAATCTGAGCCCGTTGATGAGGAAGATTATGAGCGGCGTCCCCTTGCAATGGTTCCCCCTGGTATTCAATGAACTATCCCTTAATATTATTTTTATTGTTTTTGACATCTTAGTTGTAATTGGCATGTTTGGATTATAATTTGCAAACTTTGATTTAATTTATCAGAAAAGTAACTTTGTTTTATTCTTCTTTTCAAACCATGGATTGTGATTCAAACTCATGTTCACACACACGCACCCAACTATGGTTTTGCTAAATGTATTATTGTATTATTTGTGGATGGAACTATGTGATGTATCTGATTGCTAGTACGATAAGATAGATGTATACATCTTACAAAATACAGATACAGAACTTTATTGTCAGAGTACTTGAAAAGAATAAAGTCAATGCACGAATTATTAGTTTAACTGCTTTTGACACTACCATTGCATAATTGCATCATGTTGTCAGCTGAAACTGATAGAGGCGAGGCACATTGATCATATGCACTATTTTCCATAAACAATATGCAAGCAAGCCTTTACTGATTTATGAGTTTCTAGAAAGTTTGCATAAGATACTCTATGGTAGGCACTGCTTGTATTTTAGAAGGCAGAGTTTGACCTCTGAATCTGACCAATTATTTTTCTTTTTCAACATTGTTTTGCCACTTTCAATTTCGTTCTTTCGTTGCATGTTAACATTCATCTTGTAAAGATATATATATTTTTTTAAATGCAGAACCATCAAGCTTAAGGCGCTATTCAAGGAAGAATGGTGTTACTGAAAAGCAAGGTGCCCATGTCTCCATGACACCATCACACCATAACACACGTAAAGAAGTGGTTTCTGATGTTGTGATAGCCTCTTCAGCTCAGGGAGAAGTAAAACTCTCTCTGAGCTGCAGCTCAGCTCTTCAGGGACCAGATTTCCGCATGCCTACTCAAGAACAACTTCTTAAGATGATGGAGGATAAATGTCTGCGATCATATAAAATCATCGACCCAAATTTTTCTGTCGGAAAAATGTTGAGAGATATATGTGATTGCATGTTGGAATTTAGTACTGATTCAAACGATAACTCACAAGAAGGTTCAATGTCAAAATCAAGCATAGATGTGTCCAAGGAATCTGAGGTTGATGGCACACCCGCCATTGTGGGCAGTAAGGATTTGGACACGGGTTCTCACTCATCAAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCACCTCGAGGCCCCTTTTCACCAGCCCATCAGAGCAGTTTGGATGATGCTGTACTGGTTTCCGAGATGAACAGGACAATTGGTATTCCACAAAGTGATGTTAGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCACTCAGTTTAGTAGTTGTTCCACATCACCAGTCTACAGAAGATCGTATAAGGTCTTATCATGATGTTAGTGACCTTACAAAAGGAGAAGAGAATAATCAAATTTCATGGGTGAATGAATCATCTACTAACGACTTTCCACCACCTTTCAACTACATACCCCAAAACCTTGTGTTCCGAGATGCTTCTGTTAACATTTCTCTATCTCGTATTGGGGCTGAGGACAGTTGTTCCTGTATAGGAAGTTGCATCTTGTTGTCAGACACACATTGTGCCTGTACATATAAAACTGGGGGCAAATTTGCATATACAGCTCAAGGCCTAATTAAGGAAGAATTTTTGGAAGAGTGTATTGCTATCAGTCACAACCCTCAACAGCATTGCTTTTACTGCAAAGATTGTCCACTTGAAAGGTCAAAGAGTGATGGTTGTTTGGAACCATGTAAAGGACACTTGAAGAGAAAGTTTATTAAAGAATGTTGGAGCAAATGTGGCTGTGGGAAACAATGTGGAAATCGCGTTATCCAGCGTGGAATAACATACAACTTGCAGGTGAGTGTTTCAGTAATCTCTGCCACTAGTAAACAAAGACATTTTCTCCAATATTGATTCATAATTTTTATTTAAAAGTTCTTACACGTTGAATTTATTGTTTATGTCAAGTTATGTATCTGCAGGTCCAAGTTCCTATGTATTAGTATAATGTTATTCCCCGGTACATTTTTAAAATGTTTTCTCTAATTAATATTTTAATTTTTAAATTTAGGTATTTTTCACATCCGAAGGAAAAGGATGGGGACTTCGTACCTTAGAGGAACTGCCAAAAGGAGCATTTGTGTGTGAGTTTGCTGGAGAAATTTTAACCATTAAAGAGTTGCATGAGAGGAACATGAAATGTGCTGAAAATGGGAAATCTACTTACCCAGTTCTACTGGATGCGGAGTGGGATTCAACATTTGTGAAGGATGAAGAAGCTCTATGCTTAGATGCAGCGTCCTTTGGCAACATTGCTAGATTTATCAATCACAGGTATTGAATTTCTCACCTATTGTTTCAAGGTTGGCACCCTAAAATTCAAACTAAGGAAAACAGAGAAATAGGAGGACATAACAATTGATATCCGGAAAAATGGGAGAAGACAAAGTAGGAGGACATAACCATTGATATCCGGAAAAAATGGAGGACATAGTTGGGACCCTATTACTTGGTTGCACTTTTCATTGATAATAAGACAGTAATCATTTTTCATAGTTTATACTATTTTTTTTTTTTTTATATGAGATTGCCAACATAGGAGGACATAACCAGGGAGGAATATTTAATCATACAGACTATGCATCTAGAAAAGAAAAAAAAAAAGATATTTGGCTGGGATGTTTCATCAAAGTTGGCATGTATTTATAATATTATATGGATAAGAACAATAACTTGAGTTTAATGTGGTTGTAGTTCATATTGTTTTAAACACGTGCACTTCTAATTCTAAACATCCGAAGAGAAAAGAAATTTTTCTATGTAATTGTCATGATTGAGAAATAGTTCATTATAAATTAAAATATGTATTACAACGTTGAAAATGAGTCAGAGCCTTTTTCCACTAGATGAGTCTGCAACATGGATCCTCAAACTATGCTCATATGTAACGATAAACCACTTAATACCAATTATTTTAATCGTTTGAACTACACTTTTCCTTGATCTCTCCCTACCCCAAACTGTTTAAATATCCTTGATCTGATTTACCTTCCTTAACTTGCCTCGCATAACTGTTTATCTATCGCAATATTCCCATCTTTATAAAATTGGGTTTACTTTCTTGTATGCTATTTTTATACATTCAACTCAAATATTATTACTTATCTCATAGCTGGCAGCGGAAGGTTCAATCCTTGTTTCAGTTGCATGCTTCTAATGGTTGATTGTGTATTTAGATGATTCAATACTATGACTGTGTTATGTTAACTCTTGACTTCTGCCAAATAGTTCCTCGGCAAATGTTTGAAGGTTTTTTGGTTATTTAGGAGATTTTGTAATAACTTTAATTTTTCAGATGTTCTGATGCAAACTTGGTTGAAATCCCAATTCAAATTGAGTGTCCAGATCGTTACTACTATCATGTGAGAAGCTACCTAATCCTTGAAGTCTGAAAAGCTGTTTTACTTGCCTTCTGTTGTTATACTAATCTGCGTAGCAATTTTGCTTACCAATGCTTTTGATGTTTTGCAATTTGCAGTTTGCCCTTTTTACCACCAGAAACATAGCAGCGCATGAAGAGCTCACTTGGGTAAGTTTTGTTATGTAATATGGTTTTTCATGAAATTTTCTAGCTCACATGGGTCCTCCTATATTGTATAAAATTTTCACTTCTTTACGGTGCTTACTAATGACTCTCTTTTTAAGTAGTGAACAAACGATTAACACAGTTGGGATAATTTATTTATGGCTAAACTTATTTTCTAGTTTTTCATGGCTACTTAATCAAGAAATGCTTATGTACTTTGGGTGGATAGCAGACCATATAGTAAGGTTATACTGAGGAGGAGTGCCTGTTCATTTTTGTAGTTTACTTTCTTCAAATCATTTCATTAATCTAGAATCATTTTTTTTCTAAACAGAAGCTTATTTTTATGGTGTTTCTGCAGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTCCAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATATGAAGCGATCAAACAGTAGGTTCAATTTCTCAAACAACCTGTTCTACTCTTTTGCTGGATTGATAGTTGTTGAAAAGGCCACGACACATGTCAAATTGGATTTTTTTAGTTTTTAATTTAATTTACTTTGTTGTATCACTTGGGAGGCAACTTATTTGCCTTTTGGATTGTTTAATAACGTGCTTATAGCTTATGCTCTGATTGGTTTCAATTCACACACCATGTATGTAGACACCACCACTTTCGCCATTATTGATGCATGATTTCCGTATTTAATTTTTACTCTTTTGATGCAGGATCCACTAGGTCTGCGTTAATTGCTGGATGA
Protein sequence

>MS.gene23986.t1

MAPRPNPKIAAALQAMTEFGIPEAKVKRALKKLLKLFDKNWQLIEEENYRALLDAIFEEGDDFEEPEPQKKNKRVNEEEMEAEDAPLNVESARPLKRLRLRGQENNSPSSASSPLKKSHIEKDTALEGGSSQQPRNNAVSSDVNGRVAARPMRDASYDRGKQPASPHASYELTVPKSEPVDEEDYERRPLAMVPPEPSSLRRYSRKNGVTEKQGAHVSMTPSHHNTRKEVVSDVVIASSAQGEVKLSLSCSSALQGPDFRMPTQEQLLKMMEDKCLRSYKIIDPNFSVGKMLRDICDCMLEFSTDSNDNSQEGSMSKSSIDVSKESEVDGTPAIVGSKDLDTGSHSSNGSIQVNSFSALVSPRGPFSPAHQSSLDDAVLVSEMNRTIGIPQSDVRMQPEDPVSPNSLSLVVVPHHQSTEDRIRSYHDVSDLTKGEENNQISWVNESSTNDFPPPFNYIPQNLVFRDASVNISLSRIGAEDSCSCIGSCILLSDTHCACTYKTGGKFAYTAQGLIKEEFLEECIAISHNPQQHCFYCKDCPLERSKSDGCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVIQRGITYNLQVFFTSEGKGWGLRTLEELPKGAFVCEFAGEILTIKELHERNMKCAENGKSTYPVLLDAEWDSTFVKDEEALCLDAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFTTRNIAAHEELTWDYGIDFDDHDQPVKLFQCKCGSKFCRNMKRSNRSTRSALIAG