Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036045.t1 | XP_013468448.1 | 96.9 | 713 | 22 | 0 | 1 | 713 | 1 | 713 | 0.00E+00 | 1328.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036045.t1 | Q66GN3 | 57.7 | 719 | 294 | 3 | 1 | 713 | 25 | 739 | 2.6e-225 | 783.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036045.t1 | A0A072VWM1 | 96.9 | 713 | 22 | 0 | 1 | 713 | 1 | 713 | 0.0e+00 | 1328.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051693 | MS.gene036045 | PPI |
| MS.gene24475 | MS.gene036045 | PPI |
| MS.gene00502 | MS.gene036045 | PPI |
| MS.gene66459 | MS.gene036045 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036045.t1 | MTR_1g069630 | 96.634 | 713 | 24 | 0 | 1 | 713 | 1 | 713 | 0.0 | 1424 |
| MS.gene036045.t1 | MTR_7g097230 | 68.296 | 716 | 221 | 3 | 1 | 713 | 16 | 728 | 0.0 | 978 |
| MS.gene036045.t1 | MTR_1g075480 | 57.858 | 719 | 289 | 7 | 1 | 713 | 35 | 745 | 0.0 | 784 |
| MS.gene036045.t1 | MTR_1g075480 | 57.858 | 719 | 289 | 7 | 1 | 713 | 22 | 732 | 0.0 | 784 |
| MS.gene036045.t1 | MTR_1g075480 | 57.618 | 722 | 289 | 8 | 1 | 713 | 35 | 748 | 0.0 | 779 |
| MS.gene036045.t1 | MTR_7g097230 | 67.084 | 559 | 181 | 2 | 1 | 556 | 16 | 574 | 0.0 | 744 |
| MS.gene036045.t1 | MTR_1g075480 | 58.500 | 600 | 238 | 4 | 15 | 609 | 35 | 628 | 0.0 | 670 |
| MS.gene036045.t1 | MTR_5g026810 | 47.774 | 674 | 344 | 5 | 40 | 712 | 26 | 692 | 0.0 | 588 |
| MS.gene036045.t1 | MTR_8g071330 | 45.175 | 684 | 368 | 4 | 29 | 712 | 9 | 685 | 0.0 | 575 |
| MS.gene036045.t1 | MTR_1g018040 | 44.028 | 720 | 381 | 12 | 6 | 712 | 6 | 716 | 0.0 | 536 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036045.t1 | AT4G28600 | 58.554 | 719 | 288 | 3 | 1 | 713 | 25 | 739 | 0.0 | 795 |
| MS.gene036045.t1 | AT4G28600 | 58.554 | 719 | 288 | 3 | 1 | 713 | 25 | 739 | 0.0 | 795 |
| MS.gene036045.t1 | AT4G28600 | 58.149 | 724 | 288 | 4 | 1 | 713 | 25 | 744 | 0.0 | 788 |
| MS.gene036045.t1 | AT2G43040 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 568 |
| MS.gene036045.t1 | AT2G43040 | 47.633 | 676 | 344 | 5 | 40 | 712 | 32 | 700 | 0.0 | 568 |
| MS.gene036045.t1 | AT1G27460 | 41.399 | 715 | 380 | 10 | 6 | 712 | 6 | 689 | 1.39e-164 | 490 |
| MS.gene036045.t1 | AT1G27460 | 41.818 | 715 | 381 | 10 | 6 | 712 | 6 | 693 | 2.32e-164 | 489 |
| MS.gene036045.t1 | AT1G27460 | 42.727 | 550 | 291 | 8 | 6 | 547 | 6 | 539 | 2.69e-127 | 389 |
Find 160 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCGGCGTTCTTTGTTTC+TGG | 0.051091 | 1.4:+56403382 | None:intergenic |
| TTTCCGGTTCACCATGATTA+TGG | 0.184771 | 1.4:+56403351 | None:intergenic |
| TTCATTTGCTCTGTCTGTTT+CGG | 0.188123 | 1.4:-56402473 | MS.gene036045:CDS |
| TCATTTGCTCTGTCTGTTTC+GGG | 0.193859 | 1.4:-56402472 | MS.gene036045:CDS |
| ATCGAGTTTAGCCAATTATT+TGG | 0.205375 | 1.4:-56402443 | MS.gene036045:CDS |
| TACCCTCAGCCTTGTGAAAA+AGG | 0.205859 | 1.4:+56400946 | None:intergenic |
| CAGGCTCTTGAAAGGTTTAA+AGG | 0.236026 | 1.4:-56403269 | MS.gene036045:intron |
| ATCATCTGCACACTCAAAAT+TGG | 0.251662 | 1.4:-56402134 | MS.gene036045:CDS |
| CCAATCTTGCAAAGTTATTA+TGG | 0.251753 | 1.4:-56402884 | MS.gene036045:CDS |
| CATTCAGCACCAAAGTTATC+AGG | 0.259185 | 1.4:+56402829 | None:intergenic |
| ACACGTTCCCGGTTTGTTAA+TGG | 0.260326 | 1.4:-56402287 | MS.gene036045:CDS |
| GGCGAGCACTTCTTCATAAA+TGG | 0.260430 | 1.4:-56402714 | MS.gene036045:CDS |
| GAGTAATTCTTCCAAATAAT+TGG | 0.272977 | 1.4:+56402432 | None:intergenic |
| CCATAATAACTTTGCAAGAT+TGG | 0.280709 | 1.4:+56402884 | None:intergenic |
| CCATTTGAGAACGTAGATTA+GGG | 0.289798 | 1.4:+56402611 | None:intergenic |
| TTCTGCTTCTTCTATATTAC+CGG | 0.290062 | 1.4:+56403978 | None:intergenic |
| TCAGCAAGCTTCCACAATTC+TGG | 0.299846 | 1.4:+56402766 | None:intergenic |
| GCCTCTTCTATGTTGTTTGC+CGG | 0.304221 | 1.4:+56402574 | None:intergenic |
| CAAATTCAGAGCAAAAGTTT+TGG | 0.314010 | 1.4:-56401719 | MS.gene036045:CDS |
| TGCAAAGTGCGTCATAAAAC+TGG | 0.329264 | 1.4:-56401957 | MS.gene036045:CDS |
| AACAAACCGGGAACGTGTTC+CGG | 0.330656 | 1.4:+56402292 | None:intergenic |
| TTCCGGTTCACCATGATTAT+GGG | 0.345463 | 1.4:+56403352 | None:intergenic |
| TTCTTGGAAGAAGCTATATA+AGG | 0.353884 | 1.4:-56401696 | MS.gene036045:intron |
| GATCTAGCTCTTTGTAATTA+CGG | 0.355641 | 1.4:-56402376 | MS.gene036045:CDS |
| GAAAGGCCGGAACACGTTCC+CGG | 0.359395 | 1.4:-56402298 | MS.gene036045:CDS |
| TCTAAAAGCAAAATCGTTGC+AGG | 0.362819 | 1.4:-56403288 | MS.gene036045:CDS |
| GGAAGATACGAGTATCAAAA+AGG | 0.369028 | 1.4:-56403482 | MS.gene036045:CDS |
| TACTGAAGGGTCTCTCATTC+CGG | 0.371242 | 1.4:+56402039 | None:intergenic |
| AATGGACGGCTCGTTTGTTC+CGG | 0.372709 | 1.4:-56402593 | MS.gene036045:CDS |
| CATAATAACTTTGCAAGATT+GGG | 0.372836 | 1.4:+56402885 | None:intergenic |
| GGAACTTGGAAGTGGAAATA+TGG | 0.379485 | 1.4:-56401479 | MS.gene036045:CDS |
| TGAATCTTTGCTACAGTCCC+TGG | 0.383146 | 1.4:+56402682 | None:intergenic |
| GAAGGTGGTTCCAATGTTAA+AGG | 0.388143 | 1.4:-56401935 | MS.gene036045:CDS |
| GTGAAGCTACTTTGTCTTAC+CGG | 0.388356 | 1.4:-56402735 | MS.gene036045:CDS |
| AATGTTGCAAAATTCTATCT+TGG | 0.388770 | 1.4:-56402163 | MS.gene036045:CDS |
| CTTTGGATCAGACTGGGAAA+TGG | 0.392510 | 1.4:-56401841 | MS.gene036045:CDS |
| GCGTTCTTTGTTTCTGGAAA+GGG | 0.399083 | 1.4:+56403388 | None:intergenic |
| ATCTATTATCAACGCTGCTT+TGG | 0.399909 | 1.4:-56401858 | MS.gene036045:CDS |
| TCAGACTGGGAAATGGGATC+AGG | 0.402096 | 1.4:-56401834 | MS.gene036045:CDS |
| GCTTCTGCTTGGTATAATCT+TGG | 0.405820 | 1.4:-56400969 | MS.gene036045:CDS |
| CCTACGCTCAGGGGAGCAAT+TGG | 0.409024 | 1.4:-56404109 | MS.gene036045:CDS |
| AAGTTATCAGGCAAGCCTTC+AGG | 0.409413 | 1.4:+56402841 | None:intergenic |
| ACAGAATGTATAGACATTTC+CGG | 0.415399 | 1.4:+56403335 | None:intergenic |
| TCCATTTGAGAACGTAGATT+AGG | 0.418331 | 1.4:+56402610 | None:intergenic |
| CCGAGATCGTGCTAGGAACT+TGG | 0.420476 | 1.4:-56401493 | MS.gene036045:CDS |
| TTTAGAAGCCATTAACAAAC+CGG | 0.423076 | 1.4:+56402279 | None:intergenic |
| TGGTGCTGAATGTAAATTGC+AGG | 0.428911 | 1.4:-56402818 | MS.gene036045:CDS |
| ATCTGAGGCACTTCAAGCCT+TGG | 0.438993 | 1.4:-56402080 | MS.gene036045:CDS |
| TCTCTCTCAATAGAATTGAA+TGG | 0.439125 | 1.4:-56402519 | MS.gene036045:CDS |
| GAATTTCTCGAAATCAGAAA+TGG | 0.439970 | 1.4:+56402111 | None:intergenic |
| GTACTTCAGCAGTGGAGATT+AGG | 0.444856 | 1.4:+56401069 | None:intergenic |
| CATGGAATCTTTCACTTCGA+TGG | 0.444879 | 1.4:+56402398 | None:intergenic |
| ACCCCTTCTTCTGCAAGACT+AGG | 0.448007 | 1.4:+56402241 | None:intergenic |
| TTCCCATAATCATGGTGAAC+CGG | 0.454699 | 1.4:-56403354 | MS.gene036045:CDS |
| TTTGGATCAGACTGGGAAAT+GGG | 0.455022 | 1.4:-56401840 | MS.gene036045:CDS |
| CTCTCTCAATAGAATTGAAT+GGG | 0.455430 | 1.4:-56402518 | MS.gene036045:CDS |
| GGCGTTCTTTGTTTCTGGAA+AGG | 0.457269 | 1.4:+56403387 | None:intergenic |
| GGCGTGTCTTTCAAAATCTA+AGG | 0.457296 | 1.4:-56401406 | MS.gene036045:CDS |
| CCCCTTCTTCTGCAAGACTA+GGG | 0.461370 | 1.4:+56402242 | None:intergenic |
| CGGAGCAGGTAAGGACTTGA+TGG | 0.465727 | 1.4:-56402356 | MS.gene036045:CDS |
| CCCTAATCTACGTTCTCAAA+TGG | 0.465907 | 1.4:-56402611 | MS.gene036045:CDS |
| ATTAGGCTGCGGACATGGCC+AGG | 0.467685 | 1.4:+56401086 | None:intergenic |
| CAAAGTTATTATGGACATAG+TGG | 0.467812 | 1.4:-56402875 | MS.gene036045:CDS |
| ACGCCTCTGCATCATGCCAC+TGG | 0.468078 | 1.4:+56401424 | None:intergenic |
| GAAGGCTTGCCTGATAACTT+TGG | 0.468639 | 1.4:-56402838 | MS.gene036045:CDS |
| CATAAATGGAATCTCGATCC+AGG | 0.473610 | 1.4:-56402700 | MS.gene036045:CDS |
| CATCCGAATCTCTTGTCACC+AGG | 0.475993 | 1.4:-56404062 | MS.gene036045:CDS |
| CTACGCTCAGGGGAGCAATT+GGG | 0.477613 | 1.4:-56404108 | MS.gene036045:CDS |
| GTCCCTGGTGACAAGAGATT+CGG | 0.477939 | 1.4:+56404059 | None:intergenic |
| ACAATGAAGTTCCTACGCTC+AGG | 0.478204 | 1.4:-56404120 | MS.gene036045:CDS |
| CAGTAACCATCCTTTAACAT+TGG | 0.480051 | 1.4:+56401925 | None:intergenic |
| GTCTTTGAGGGAATAGATAT+AGG | 0.481239 | 1.4:-56403437 | MS.gene036045:CDS |
| AACCCTAGTCTTGCAGAAGA+AGG | 0.483388 | 1.4:-56402244 | MS.gene036045:CDS |
| CAGGAAGCTAGAGCATTACT+AGG | 0.486649 | 1.4:-56403503 | MS.gene036045:CDS |
| CGTTCTGCCAGCAGTTTCCA+AGG | 0.488431 | 1.4:+56402063 | None:intergenic |
| TGAGGGTAAAATATCATCAT+TGG | 0.491744 | 1.4:-56400931 | MS.gene036045:CDS |
| TATTTGGAAGAATTACTCCC+TGG | 0.494270 | 1.4:-56402427 | MS.gene036045:CDS |
| GTGACAAGAGATTCGGATGA+AGG | 0.497025 | 1.4:+56404066 | None:intergenic |
| GAAACTGCTGGCAGAACGAC+CGG | 0.498236 | 1.4:-56402058 | MS.gene036045:CDS |
| GCTCTTTGTAATTACGGAGC+AGG | 0.499405 | 1.4:-56402370 | MS.gene036045:CDS |
| GATGCTTTAGACATTGATCC+TGG | 0.500078 | 1.4:-56401104 | MS.gene036045:CDS |
| TTGTAATTACGGAGCAGGTA+AGG | 0.501729 | 1.4:-56402365 | MS.gene036045:CDS |
| TCACTTCGATGGATAGTCCC+AGG | 0.503053 | 1.4:+56402409 | None:intergenic |
| AGCTGCATTACACGTCTTTG+AGG | 0.505490 | 1.4:-56403450 | MS.gene036045:CDS |
| AATCGTTGCAGGCTCTTGAA+AGG | 0.510742 | 1.4:-56403277 | MS.gene036045:CDS |
| TTGAGCTGCTTCCAGAATTG+TGG | 0.513561 | 1.4:-56402777 | MS.gene036045:CDS |
| CGCCTCTGCATCATGCCACT+GGG | 0.513605 | 1.4:+56401425 | None:intergenic |
| AACGCTGCTTTGGATCAGAC+TGG | 0.514212 | 1.4:-56401848 | MS.gene036045:CDS |
| AATTACAAAGAGCTAGATCA+TGG | 0.514312 | 1.4:+56402380 | None:intergenic |
| GCTGCATTACACGTCTTTGA+GGG | 0.518869 | 1.4:-56403449 | MS.gene036045:CDS |
| CTGAGATGGTATAGTACTGA+AGG | 0.523029 | 1.4:+56402025 | None:intergenic |
| GCTAAAATTCAAATTGCACT+TGG | 0.524807 | 1.4:-56401791 | MS.gene036045:CDS |
| ATTTGGAAGAATTACTCCCT+GGG | 0.525471 | 1.4:-56402426 | MS.gene036045:CDS |
| GAATTATCTCTGCGAGAAAG+TGG | 0.528266 | 1.4:-56403958 | MS.gene036045:CDS |
| TGGAGATTAGGCTGCGGACA+TGG | 0.529432 | 1.4:+56401081 | None:intergenic |
| AAGAAACATTCCCATAATCA+TGG | 0.530663 | 1.4:-56403362 | MS.gene036045:CDS |
| AAGCTGAGTGTACGTCTCAA+TGG | 0.530685 | 1.4:+56401754 | None:intergenic |
| CTTCAAGCCTTGGAAACTGC+TGG | 0.530954 | 1.4:-56402070 | MS.gene036045:CDS |
| ACCCTAGTCTTGCAGAAGAA+GGG | 0.531321 | 1.4:-56402243 | MS.gene036045:CDS |
| CCAAGTTCCTAGCACGATCT+CGG | 0.533706 | 1.4:+56401493 | None:intergenic |
| GAAAGGTGGTCTAAAATTGA+AGG | 0.534995 | 1.4:+56402493 | None:intergenic |
| GGAAATGTCTATACATTCTG+TGG | 0.537831 | 1.4:-56403333 | MS.gene036045:CDS |
| AATTGTTGAGTGATAGAGAA+AGG | 0.538244 | 1.4:-56402315 | MS.gene036045:CDS |
| AGAGCACTTGAGAGCGTGGA+CGG | 0.538422 | 1.4:-56402205 | MS.gene036045:CDS |
| AGGCGTAATGTATGAAGCAA+AGG | 0.544212 | 1.4:-56401159 | MS.gene036045:CDS |
| TCGTGCTAGGAACTTGGAAG+TGG | 0.547148 | 1.4:-56401487 | MS.gene036045:CDS |
| AGTGATCATTCTTTCCTACC+TGG | 0.549462 | 1.4:-56404024 | MS.gene036045:CDS |
| GGCGTAATGTATGAAGCAAA+GGG | 0.550921 | 1.4:-56401158 | MS.gene036045:CDS |
| AATAATTGGCTAAACTCGAT+AGG | 0.551034 | 1.4:+56402446 | None:intergenic |
| TATAGAATATGTCATCTGAA+AGG | 0.552996 | 1.4:+56400849 | None:intergenic |
| CAATGAAGTTCCTACGCTCA+GGG | 0.553279 | 1.4:-56404119 | MS.gene036045:CDS |
| ACAGATTGAATGCTTCTGCT+TGG | 0.559962 | 1.4:-56400980 | MS.gene036045:CDS |
| CAGACTGGGAAATGGGATCA+GGG | 0.561941 | 1.4:-56401833 | MS.gene036045:CDS |
| GTTGAGTGATAGAGAAAGGC+CGG | 0.563279 | 1.4:-56402311 | MS.gene036045:CDS |
| CCCTAGTCTTGCAGAAGAAG+GGG | 0.568534 | 1.4:-56402242 | MS.gene036045:CDS |
| GTGGTTCCAATGTTAAAGGA+TGG | 0.575049 | 1.4:-56401931 | MS.gene036045:CDS |
| TTCCCAGTGGCATGATGCAG+AGG | 0.575200 | 1.4:-56401427 | MS.gene036045:CDS |
| CACTTCGATGGATAGTCCCA+GGG | 0.576038 | 1.4:+56402410 | None:intergenic |
| TGACATCTAGAAGCATAATA+CGG | 0.576965 | 1.4:+56401375 | None:intergenic |
| TGGAAAACTTGATCACAAGT+TGG | 0.577745 | 1.4:-56404004 | MS.gene036045:CDS |
| AGGGTAACCGAGATCGTGCT+AGG | 0.578066 | 1.4:-56401500 | MS.gene036045:CDS |
| ACTTCCTGAAAAGAAGTCCC+TGG | 0.578708 | 1.4:+56404044 | None:intergenic |
| TCAGAGAGCACTTGAGAGCG+TGG | 0.581192 | 1.4:-56402209 | MS.gene036045:CDS |
| CAGCGTATTCTAAACTGAGA+TGG | 0.582160 | 1.4:+56402011 | None:intergenic |
| AAGGATGGTTACTGTTGGCA+CGG | 0.592491 | 1.4:-56401916 | MS.gene036045:CDS |
| CAGCTCAACTGCCTTGCTCA+CGG | 0.599337 | 1.4:+56402792 | None:intergenic |
| GATTATGGGAATGTTTCTTG+CGG | 0.600308 | 1.4:+56403366 | None:intergenic |
| GTGGAATCTTCATTGCCTGA+AGG | 0.600900 | 1.4:-56402856 | MS.gene036045:CDS |
| TTAGAAGCCATTAACAAACC+GGG | 0.606436 | 1.4:+56402280 | None:intergenic |
| ATAAATGGAATCTCGATCCA+GGG | 0.607813 | 1.4:-56402699 | MS.gene036045:CDS |
| ATTGCAGGAGACCGTGAGCA+AGG | 0.607861 | 1.4:-56402803 | MS.gene036045:CDS |
| ATTTATGAAGAAGTGCTCGC+CGG | 0.609816 | 1.4:+56402716 | None:intergenic |
| TGTCATCTGAAAGGTTCAAG+TGG | 0.610618 | 1.4:+56400858 | None:intergenic |
| ACGCTGCTTTGGATCAGACT+GGG | 0.611127 | 1.4:-56401847 | MS.gene036045:CDS |
| TGAGATGGTATAGTACTGAA+GGG | 0.615082 | 1.4:+56402026 | None:intergenic |
| CCAATTGCTCCCCTGAGCGT+AGG | 0.615359 | 1.4:+56404109 | None:intergenic |
| CGCTCAGGGGAGCAATTGGG+AGG | 0.616293 | 1.4:-56404105 | MS.gene036045:CDS |
| AGGTAAGGACTTGATGGCAA+TGG | 0.618555 | 1.4:-56402350 | MS.gene036045:CDS |
| GCGTCTAAGTACTTCAGCAG+TGG | 0.622569 | 1.4:+56401061 | None:intergenic |
| AGCAAAGGGCCTTTACAAAG+AGG | 0.624063 | 1.4:-56401144 | MS.gene036045:CDS |
| AAGTGCGTCATAAAACTGGA+AGG | 0.625420 | 1.4:-56401953 | MS.gene036045:CDS |
| AAACAGACAGAGCAAATGAA+AGG | 0.626924 | 1.4:+56402476 | None:intergenic |
| GTTTAGAATACGCTGAACAA+AGG | 0.629222 | 1.4:-56402003 | MS.gene036045:CDS |
| GAAATGTCTATACATTCTGT+GGG | 0.629408 | 1.4:-56403332 | MS.gene036045:CDS |
| TGTTAAAGGATGGTTACTGT+TGG | 0.631562 | 1.4:-56401921 | MS.gene036045:CDS |
| ATCCGAATCTCTTGTCACCA+GGG | 0.633299 | 1.4:-56404061 | MS.gene036045:CDS |
| ATTTGAGAACGTAGATTAGG+GGG | 0.633365 | 1.4:+56402613 | None:intergenic |
| AATCTACGTTCTCAAATGGA+CGG | 0.634441 | 1.4:-56402607 | MS.gene036045:CDS |
| GCTTCTAGATGTCATGCACT+CGG | 0.637376 | 1.4:-56401366 | MS.gene036045:intron |
| CTTGATCACAAGTTGGACAC+CGG | 0.647590 | 1.4:-56403997 | MS.gene036045:CDS |
| TCCGGCAAACAACATAGAAG+AGG | 0.651451 | 1.4:-56402575 | MS.gene036045:CDS |
| CATTTGAGAACGTAGATTAG+GGG | 0.654581 | 1.4:+56402612 | None:intergenic |
| CAGCAGTGGAGATTAGGCTG+CGG | 0.655573 | 1.4:+56401075 | None:intergenic |
| GAAATTCAAGAGACAATCTG+AGG | 0.658610 | 1.4:-56402095 | MS.gene036045:CDS |
| CAGACAGAGCAAATGAAAGG+TGG | 0.667903 | 1.4:+56402479 | None:intergenic |
| TGCGTCATAAAACTGGAAGG+TGG | 0.682113 | 1.4:-56401950 | MS.gene036045:CDS |
| AATGAAGTTCCTACGCTCAG+GGG | 0.692085 | 1.4:-56404118 | MS.gene036045:CDS |
| TGTACATCAGTCTTTCCCAG+TGG | 0.736555 | 1.4:-56401440 | MS.gene036045:CDS |
| TAAGACAAAGTAGCTTCACG+AGG | 0.755950 | 1.4:+56402739 | None:intergenic |
| AAGTGGCGTGTTAAACTACG+AGG | 0.762852 | 1.4:-56403941 | MS.gene036045:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAATAGTTTTTTTTTTTTT+TGG | + | chr1.4:56401392-56401411 | None:intergenic | 10.0% |
| !!! | CAATAGTTTTTTTTTTTTTT+GGG | + | chr1.4:56401391-56401410 | None:intergenic | 10.0% |
| !!! | TTTTTCTTTTCAAATTTAAC+AGG | - | chr1.4:56403798-56403817 | MS.gene036045:intron | 15.0% |
| !! | GTGACTATAACTATTAAAAT+TGG | - | chr1.4:56403365-56403384 | MS.gene036045:CDS | 20.0% |
| !!! | TAAAAAAGTGAAGTATTTTG+AGG | + | chr1.4:56401069-56401088 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCATAAACTATCT+TGG | + | chr1.4:56401931-56401950 | None:intergenic | 20.0% |
| ! | AAACTATCTTGGATATCTAA+TGG | + | chr1.4:56401920-56401939 | None:intergenic | 25.0% |
| ! | AAATATTCAATCAGTACAAG+TGG | + | chr1.4:56403320-56403339 | None:intergenic | 25.0% |
| ! | AAATTGGATAAATGTTTCAC+TGG | - | chr1.4:56403381-56403400 | MS.gene036045:CDS | 25.0% |
| ! | AATGTTGCAAAATTCTATCT+TGG | - | chr1.4:56402814-56402833 | MS.gene036045:CDS | 25.0% |
| ! | CATAATAACTTTGCAAGATT+GGG | + | chr1.4:56402095-56402114 | None:intergenic | 25.0% |
| ! | CATCTCAAGAAAAAGTTAAA+TGG | + | chr1.4:56403713-56403732 | None:intergenic | 25.0% |
| ! | GAGTAATTCTTCCAAATAAT+TGG | + | chr1.4:56402548-56402567 | None:intergenic | 25.0% |
| ! | TTCAAGTGATAATAATCTGT+TGG | + | chr1.4:56403745-56403764 | None:intergenic | 25.0% |
| ! | TTGTAGCTACTATTCTAATT+TGG | - | chr1.4:56401428-56401447 | MS.gene036045:CDS | 25.0% |
| !! | TAAGTTATCATGTGGATTTT+TGG | - | chr1.4:56401087-56401106 | MS.gene036045:CDS | 25.0% |
| !!! | CACTTTTTTAAGTTATCATG+TGG | - | chr1.4:56401079-56401098 | MS.gene036045:CDS | 25.0% |
| !!! | CATTTAACTTTTTCTTGAGA+TGG | - | chr1.4:56403711-56403730 | MS.gene036045:intron | 25.0% |
| !!! | GTTGTTTTTCTTCTATATAG+TGG | - | chr1.4:56402328-56402347 | MS.gene036045:CDS | 25.0% |
| !!! | TTTTTCTTCTATATAGTGGA+GGG | - | chr1.4:56402332-56402351 | MS.gene036045:CDS | 25.0% |
| !!! | TTTTTTTTTGGGTACATAGA+CGG | + | chr1.4:56401380-56401399 | None:intergenic | 25.0% |
| AAAATATGCATGCAATCTAC+AGG | - | chr1.4:56401455-56401474 | MS.gene036045:CDS | 30.0% | |
| AAGAAACATTCCCATAATCA+TGG | - | chr1.4:56401615-56401634 | MS.gene036045:intron | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr1.4:56401160-56401179 | None:intergenic | 30.0% | |
| AATAATTGGCTAAACTCGAT+AGG | + | chr1.4:56402534-56402553 | None:intergenic | 30.0% | |
| AATTACAAAGAGCTAGATCA+TGG | + | chr1.4:56402600-56402619 | None:intergenic | 30.0% | |
| AATTGTTGAGTGATAGAGAA+AGG | - | chr1.4:56402662-56402681 | MS.gene036045:CDS | 30.0% | |
| ACAGAATGTATAGACATTTC+CGG | + | chr1.4:56401645-56401664 | None:intergenic | 30.0% | |
| ATCGAGTTTAGCCAATTATT+TGG | - | chr1.4:56402534-56402553 | MS.gene036045:CDS | 30.0% | |
| ATTCAGCGTTTGTAGAATTA+AGG | - | chr1.4:56401134-56401153 | MS.gene036045:CDS | 30.0% | |
| CAAAGTTATTATGGACATAG+TGG | - | chr1.4:56402102-56402121 | MS.gene036045:CDS | 30.0% | |
| CCAATCTTGCAAAGTTATTA+TGG | - | chr1.4:56402093-56402112 | MS.gene036045:CDS | 30.0% | |
| CCATAATAACTTTGCAAGAT+TGG | + | chr1.4:56402096-56402115 | None:intergenic | 30.0% | |
| CTCTCTCAATAGAATTGAAT+GGG | - | chr1.4:56402459-56402478 | MS.gene036045:CDS | 30.0% | |
| GAAATGTCTATACATTCTGT+GGG | - | chr1.4:56401645-56401664 | MS.gene036045:intron | 30.0% | |
| GAATTTCTCGAAATCAGAAA+TGG | + | chr1.4:56402869-56402888 | None:intergenic | 30.0% | |
| GCTAAAATTCAAATTGCACT+TGG | - | chr1.4:56403186-56403205 | MS.gene036045:intron | 30.0% | |
| TAAGAATCAAAAAACCAGCA+AGG | + | chr1.4:56401737-56401756 | None:intergenic | 30.0% | |
| TAGCATATACGAAAACAGAT+TGG | - | chr1.4:56402003-56402022 | MS.gene036045:CDS | 30.0% | |
| TATCTGTACCATTTGTGATA+GGG | - | chr1.4:56403458-56403477 | MS.gene036045:CDS | 30.0% | |
| TCACAAATGGTACAGATAAA+AGG | + | chr1.4:56403456-56403475 | None:intergenic | 30.0% | |
| TCTCTCTCAATAGAATTGAA+TGG | - | chr1.4:56402458-56402477 | MS.gene036045:CDS | 30.0% | |
| TGAGGGTAAAATATCATCAT+TGG | - | chr1.4:56404046-56404065 | MS.gene036045:CDS | 30.0% | |
| TTATCTGTACCATTTGTGAT+AGG | - | chr1.4:56403457-56403476 | MS.gene036045:CDS | 30.0% | |
| TTCTGCTTCTTCTATATTAC+CGG | + | chr1.4:56401002-56401021 | None:intergenic | 30.0% | |
| TTCTTGGAAGAAGCTATATA+AGG | - | chr1.4:56403281-56403300 | MS.gene036045:CDS | 30.0% | |
| TTTAGAAGCCATTAACAAAC+CGG | + | chr1.4:56402701-56402720 | None:intergenic | 30.0% | |
| TTTGTATGTCAAGGAATTTG+TGG | - | chr1.4:56401772-56401791 | MS.gene036045:CDS | 30.0% | |
| ! | ATCTGCTCAAAAACAGTTTT+TGG | - | chr1.4:56403089-56403108 | MS.gene036045:intron | 30.0% |
| ! | CAAATTCAGAGCAAAAGTTT+TGG | - | chr1.4:56403258-56403277 | MS.gene036045:intron | 30.0% |
| ! | GATTGAATATTTCTGCAGAA+TGG | - | chr1.4:56403328-56403347 | MS.gene036045:CDS | 30.0% |
| ! | GTTTTTCTTCTATATAGTGG+AGG | - | chr1.4:56402331-56402350 | MS.gene036045:CDS | 30.0% |
| ! | TGACATCTAGAAGCATAATA+CGG | + | chr1.4:56403605-56403624 | None:intergenic | 30.0% |
| !! | AGATTGGTTTCAATAACCAT+AGG | - | chr1.4:56402019-56402038 | MS.gene036045:CDS | 30.0% |
| !! | GATCTAGCTCTTTGTAATTA+CGG | - | chr1.4:56402601-56402620 | MS.gene036045:CDS | 30.0% |
| !! | TGGATTTTTGGATATGCATT+TGG | - | chr1.4:56401099-56401118 | MS.gene036045:CDS | 30.0% |
| !! | TTTTCTTCTATATAGTGGAG+GGG | - | chr1.4:56402333-56402352 | MS.gene036045:CDS | 30.0% |
| !!! | CTCTCTTTTTTTGTATGTCA+AGG | - | chr1.4:56401763-56401782 | MS.gene036045:CDS | 30.0% |
| AAACAGACAGAGCAAATGAA+AGG | + | chr1.4:56402504-56402523 | None:intergenic | 35.0% | |
| AATCTACGTTCTCAAATGGA+CGG | - | chr1.4:56402370-56402389 | MS.gene036045:CDS | 35.0% | |
| ACACTTTGACTAATGTCCTA+TGG | + | chr1.4:56402038-56402057 | None:intergenic | 35.0% | |
| ACAGATAAAAGGTAAACAGC+TGG | + | chr1.4:56403445-56403464 | None:intergenic | 35.0% | |
| ATAAATGGAATCTCGATCCA+GGG | - | chr1.4:56402278-56402297 | MS.gene036045:CDS | 35.0% | |
| ATCATCTGCACACTCAAAAT+TGG | - | chr1.4:56402843-56402862 | MS.gene036045:CDS | 35.0% | |
| ATCTATTATCAACGCTGCTT+TGG | - | chr1.4:56403119-56403138 | MS.gene036045:intron | 35.0% | |
| ATTTGAGAACGTAGATTAGG+GGG | + | chr1.4:56402367-56402386 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTACTCCCT+GGG | - | chr1.4:56402551-56402570 | MS.gene036045:CDS | 35.0% | |
| CAGTAACCATCCTTTAACAT+TGG | + | chr1.4:56403055-56403074 | None:intergenic | 35.0% | |
| CATTTGAGAACGTAGATTAG+GGG | + | chr1.4:56402368-56402387 | None:intergenic | 35.0% | |
| CCATTTGAGAACGTAGATTA+GGG | + | chr1.4:56402369-56402388 | None:intergenic | 35.0% | |
| GAAATTCAAGAGACAATCTG+AGG | - | chr1.4:56402882-56402901 | MS.gene036045:CDS | 35.0% | |
| GATTATGGGAATGTTTCTTG+CGG | + | chr1.4:56401614-56401633 | None:intergenic | 35.0% | |
| GGAAATGTCTATACATTCTG+TGG | - | chr1.4:56401644-56401663 | MS.gene036045:intron | 35.0% | |
| GGAAGATACGAGTATCAAAA+AGG | - | chr1.4:56401495-56401514 | MS.gene036045:CDS | 35.0% | |
| GTGCAAAACAAGGTAGATTA+CGG | + | chr1.4:56401827-56401846 | None:intergenic | 35.0% | |
| TATTTGGAAGAATTACTCCC+TGG | - | chr1.4:56402550-56402569 | MS.gene036045:CDS | 35.0% | |
| TCCATTTGAGAACGTAGATT+AGG | + | chr1.4:56402370-56402389 | None:intergenic | 35.0% | |
| TCTAAAAGCAAAATCGTTGC+AGG | - | chr1.4:56401689-56401708 | MS.gene036045:intron | 35.0% | |
| TGCAAAACAAGGTAGATTAC+GGG | + | chr1.4:56401826-56401845 | None:intergenic | 35.0% | |
| TGGAAAACTTGATCACAAGT+TGG | - | chr1.4:56400973-56400992 | MS.gene036045:CDS | 35.0% | |
| TGTTAAAGGATGGTTACTGT+TGG | - | chr1.4:56403056-56403075 | MS.gene036045:intron | 35.0% | |
| TTAGAAGCCATTAACAAACC+GGG | + | chr1.4:56402700-56402719 | None:intergenic | 35.0% | |
| TTCATTTGCTCTGTCTGTTT+CGG | - | chr1.4:56402504-56402523 | MS.gene036045:CDS | 35.0% | |
| TTGTAGAATTAAGGCCTGTT+TGG | - | chr1.4:56401143-56401162 | MS.gene036045:CDS | 35.0% | |
| ! | AACTTGTGATCAAGTTTTCC+AGG | + | chr1.4:56400974-56400993 | None:intergenic | 35.0% |
| ! | GAAAGGTGGTCTAAAATTGA+AGG | + | chr1.4:56402487-56402506 | None:intergenic | 35.0% |
| ! | GTCTTTGAGGGAATAGATAT+AGG | - | chr1.4:56401540-56401559 | MS.gene036045:intron | 35.0% |
| ! | GTTTAGAATACGCTGAACAA+AGG | - | chr1.4:56402974-56402993 | MS.gene036045:intron | 35.0% |
| ! | TGAGATGGTATAGTACTGAA+GGG | + | chr1.4:56402954-56402973 | None:intergenic | 35.0% |
| !! | GAAAGGGCAATTTTGATCTT+AGG | + | chr1.4:56401576-56401595 | None:intergenic | 35.0% |
| !! | TAATCTTGGCCTTTTTCACA+AGG | - | chr1.4:56404022-56404041 | MS.gene036045:CDS | 35.0% |
| !! | TGCTCAAAAACAGTTTTTGG+AGG | - | chr1.4:56403092-56403111 | MS.gene036045:intron | 35.0% |
| !! | TTTGTGTGTGAGTTTTCAAG+TGG | - | chr1.4:56401343-56401362 | MS.gene036045:intron | 35.0% |
| !!! | AGAGCAAAAGTTTTGGTTCT+TGG | - | chr1.4:56403265-56403284 | MS.gene036045:intron | 35.0% |
| !!! | CTTTTAGAGCCTCTTTGTAA+AGG | + | chr1.4:56403845-56403864 | None:intergenic | 35.0% |
| !!! | TAATCTACCTTGTTTTGCAC+TGG | - | chr1.4:56401827-56401846 | MS.gene036045:CDS | 35.0% |
| !!! | TGCAGTCAGAACTTTTTTGA+CGG | - | chr1.4:56403959-56403978 | MS.gene036045:CDS | 35.0% |
| AAGTGCGTCATAAAACTGGA+AGG | - | chr1.4:56403024-56403043 | MS.gene036045:intron | 40.0% | |
| ACAGATTGAATGCTTCTGCT+TGG | - | chr1.4:56403997-56404016 | MS.gene036045:CDS | 40.0% | |
| AGGCGTAATGTATGAAGCAA+AGG | - | chr1.4:56403818-56403837 | MS.gene036045:intron | 40.0% | |
| AGGTTTAAAGGTAACCTTGC+TGG | - | chr1.4:56401720-56401739 | MS.gene036045:CDS | 40.0% | |
| AGTGATCATTCTTTCCTACC+TGG | - | chr1.4:56400953-56400972 | MS.gene036045:CDS | 40.0% | |
| CAGCGTATTCTAAACTGAGA+TGG | + | chr1.4:56402969-56402988 | None:intergenic | 40.0% | |
| CAGGCTCTTGAAAGGTTTAA+AGG | - | chr1.4:56401708-56401727 | MS.gene036045:CDS | 40.0% | |
| CATAAATGGAATCTCGATCC+AGG | - | chr1.4:56402277-56402296 | MS.gene036045:CDS | 40.0% | |
| CATGGAATCTTTCACTTCGA+TGG | + | chr1.4:56402582-56402601 | None:intergenic | 40.0% | |
| CATTCAGCACCAAAGTTATC+AGG | + | chr1.4:56402151-56402170 | None:intergenic | 40.0% | |
| CCCTAATCTACGTTCTCAAA+TGG | - | chr1.4:56402366-56402385 | MS.gene036045:CDS | 40.0% | |
| GAAGGTGGTTCCAATGTTAA+AGG | - | chr1.4:56403042-56403061 | MS.gene036045:intron | 40.0% | |
| GAATTATCTCTGCGAGAAAG+TGG | - | chr1.4:56401019-56401038 | MS.gene036045:CDS | 40.0% | |
| GCTTCTGCTTGGTATAATCT+TGG | - | chr1.4:56404008-56404027 | MS.gene036045:CDS | 40.0% | |
| GGAACTTGGAAGTGGAAATA+TGG | - | chr1.4:56403498-56403517 | MS.gene036045:CDS | 40.0% | |
| GGCGTAATGTATGAAGCAAA+GGG | - | chr1.4:56403819-56403838 | MS.gene036045:intron | 40.0% | |
| GGCGTGTCTTTCAAAATCTA+AGG | - | chr1.4:56403571-56403590 | MS.gene036045:intron | 40.0% | |
| GTGGTTCCAATGTTAAAGGA+TGG | - | chr1.4:56403046-56403065 | MS.gene036045:intron | 40.0% | |
| TAAGACAAAGTAGCTTCACG+AGG | + | chr1.4:56402241-56402260 | None:intergenic | 40.0% | |
| TCATTTGCTCTGTCTGTTTC+GGG | - | chr1.4:56402505-56402524 | MS.gene036045:CDS | 40.0% | |
| TGCAAAGTGCGTCATAAAAC+TGG | - | chr1.4:56403020-56403039 | MS.gene036045:intron | 40.0% | |
| TTCCCATAATCATGGTGAAC+CGG | - | chr1.4:56401623-56401642 | MS.gene036045:intron | 40.0% | |
| TTCCGGTTCACCATGATTAT+GGG | + | chr1.4:56401628-56401647 | None:intergenic | 40.0% | |
| TTGTAATTACGGAGCAGGTA+AGG | - | chr1.4:56402612-56402631 | MS.gene036045:CDS | 40.0% | |
| TTTCCGGTTCACCATGATTA+TGG | + | chr1.4:56401629-56401648 | None:intergenic | 40.0% | |
| TTTGGATCAGACTGGGAAAT+GGG | - | chr1.4:56403137-56403156 | MS.gene036045:intron | 40.0% | |
| ! | CGAAGCTACAGAATGTTTTC+AGG | - | chr1.4:56404070-56404089 | MS.gene036045:CDS | 40.0% |
| ! | CTGAGATGGTATAGTACTGA+AGG | + | chr1.4:56402955-56402974 | None:intergenic | 40.0% |
| ! | GATGCTTTAGACATTGATCC+TGG | - | chr1.4:56403873-56403892 | MS.gene036045:intron | 40.0% |
| ! | GTCAAAAAAGTTCTGACTGC+AGG | + | chr1.4:56403960-56403979 | None:intergenic | 40.0% |
| ! | GTGAAGCTACTTTGTCTTAC+CGG | - | chr1.4:56402242-56402261 | MS.gene036045:CDS | 40.0% |
| ! | TGGTGCTGAATGTAAATTGC+AGG | - | chr1.4:56402159-56402178 | MS.gene036045:CDS | 40.0% |
| ! | TGTGATCAAGTTTTCCAGGT+AGG | + | chr1.4:56400970-56400989 | None:intergenic | 40.0% |
| ! | TTGTGGTTTTTCGCTGCATA+TGG | - | chr1.4:56401789-56401808 | MS.gene036045:CDS | 40.0% |
| !! | ATTTATGAAGAAGTGCTCGC+CGG | + | chr1.4:56402264-56402283 | None:intergenic | 40.0% |
| !! | GCGTTCTTTGTTTCTGGAAA+GGG | + | chr1.4:56401592-56401611 | None:intergenic | 40.0% |
| !! | TTTTGGGTACATAGACGGAA+TGG | + | chr1.4:56401375-56401394 | None:intergenic | 40.0% |
| !!! | CTTTTTTGACGGATGCTCTA+CGG | - | chr1.4:56403970-56403989 | MS.gene036045:CDS | 40.0% |
| AAGCTGAGTGTACGTCTCAA+TGG | + | chr1.4:56403226-56403245 | None:intergenic | 45.0% | |
| AAGGATGGTTACTGTTGGCA+CGG | - | chr1.4:56403061-56403080 | MS.gene036045:intron | 45.0% | |
| AAGTGGCGTGTTAAACTACG+AGG | - | chr1.4:56401036-56401055 | MS.gene036045:CDS | 45.0% | |
| AAGTTATCAGGCAAGCCTTC+AGG | + | chr1.4:56402139-56402158 | None:intergenic | 45.0% | |
| AATCGTTGCAGGCTCTTGAA+AGG | - | chr1.4:56401700-56401719 | MS.gene036045:CDS | 45.0% | |
| ACTTCCTGAAAAGAAGTCCC+TGG | + | chr1.4:56400936-56400955 | None:intergenic | 45.0% | |
| AGCAAAGGGCCTTTACAAAG+AGG | - | chr1.4:56403833-56403852 | MS.gene036045:intron | 45.0% | |
| AGCTGCATTACACGTCTTTG+AGG | - | chr1.4:56401527-56401546 | MS.gene036045:intron | 45.0% | |
| AGGTAAACAGCTGGAACAGA+AGG | + | chr1.4:56403436-56403455 | None:intergenic | 45.0% | |
| AGTCTCACCAGTGCAAAACA+AGG | + | chr1.4:56401837-56401856 | None:intergenic | 45.0% | |
| ATCCGAATCTCTTGTCACCA+GGG | - | chr1.4:56400916-56400935 | MS.gene036045:CDS | 45.0% | |
| CAGACAGAGCAAATGAAAGG+TGG | + | chr1.4:56402501-56402520 | None:intergenic | 45.0% | |
| CTCGGTTACCCTATCACAAA+TGG | + | chr1.4:56403469-56403488 | None:intergenic | 45.0% | |
| CTTTGGATCAGACTGGGAAA+TGG | - | chr1.4:56403136-56403155 | MS.gene036045:intron | 45.0% | |
| GAAGGCTTGCCTGATAACTT+TGG | - | chr1.4:56402139-56402158 | MS.gene036045:CDS | 45.0% | |
| GCTCTTTGTAATTACGGAGC+AGG | - | chr1.4:56402607-56402626 | MS.gene036045:CDS | 45.0% | |
| GCTGCATTACACGTCTTTGA+GGG | - | chr1.4:56401528-56401547 | MS.gene036045:intron | 45.0% | |
| GCTTCTAGATGTCATGCACT+CGG | - | chr1.4:56403611-56403630 | MS.gene036045:intron | 45.0% | |
| GGCGAGCACTTCTTCATAAA+TGG | - | chr1.4:56402263-56402282 | MS.gene036045:CDS | 45.0% | |
| GTACTTCAGCAGTGGAGATT+AGG | + | chr1.4:56403911-56403930 | None:intergenic | 45.0% | |
| GTGACAAGAGATTCGGATGA+AGG | + | chr1.4:56400914-56400933 | None:intergenic | 45.0% | |
| GTGGAATCTTCATTGCCTGA+AGG | - | chr1.4:56402121-56402140 | MS.gene036045:CDS | 45.0% | |
| GTTGAGTGATAGAGAAAGGC+CGG | - | chr1.4:56402666-56402685 | MS.gene036045:CDS | 45.0% | |
| TACTGAAGGGTCTCTCATTC+CGG | + | chr1.4:56402941-56402960 | None:intergenic | 45.0% | |
| TCAGCAAGCTTCCACAATTC+TGG | + | chr1.4:56402214-56402233 | None:intergenic | 45.0% | |
| TCCGGCAAACAACATAGAAG+AGG | - | chr1.4:56402402-56402421 | MS.gene036045:CDS | 45.0% | |
| TGAATCTTTGCTACAGTCCC+TGG | + | chr1.4:56402298-56402317 | None:intergenic | 45.0% | |
| TGCGTCATAAAACTGGAAGG+TGG | - | chr1.4:56403027-56403046 | MS.gene036045:intron | 45.0% | |
| TGTACATCAGTCTTTCCCAG+TGG | - | chr1.4:56403537-56403556 | MS.gene036045:intron | 45.0% | |
| TTGAGCTGCTTCCAGAATTG+TGG | - | chr1.4:56402200-56402219 | MS.gene036045:CDS | 45.0% | |
| ! | AGGTAAGGACTTGATGGCAA+TGG | - | chr1.4:56402627-56402646 | MS.gene036045:CDS | 45.0% |
| ! | CAGGAAGCTAGAGCATTACT+AGG | - | chr1.4:56401474-56401493 | MS.gene036045:CDS | 45.0% |
| ! | CTTGATCACAAGTTGGACAC+CGG | - | chr1.4:56400980-56400999 | MS.gene036045:CDS | 45.0% |
| ! | GCCTCTTCTATGTTGTTTGC+CGG | + | chr1.4:56402406-56402425 | None:intergenic | 45.0% |
| ! | TACCCTCAGCCTTGTGAAAA+AGG | + | chr1.4:56404034-56404053 | None:intergenic | 45.0% |
| ! | TTTGCACTGGTGAGACTGTT+TGG | - | chr1.4:56401840-56401859 | MS.gene036045:CDS | 45.0% |
| !! | AACCCTAGTCTTGCAGAAGA+AGG | - | chr1.4:56402733-56402752 | MS.gene036045:CDS | 45.0% |
| !! | ACACGTTCCCGGTTTGTTAA+TGG | - | chr1.4:56402690-56402709 | MS.gene036045:CDS | 45.0% |
| !! | ACCCTAGTCTTGCAGAAGAA+GGG | - | chr1.4:56402734-56402753 | MS.gene036045:CDS | 45.0% |
| !! | GGCGTTCTTTGTTTCTGGAA+AGG | + | chr1.4:56401593-56401612 | None:intergenic | 45.0% |
| AACAAACCGGGAACGTGTTC+CGG | + | chr1.4:56402688-56402707 | None:intergenic | 50.0% | |
| AATGGACGGCTCGTTTGTTC+CGG | - | chr1.4:56402384-56402403 | MS.gene036045:CDS | 50.0% | |
| ACCCCTTCTTCTGCAAGACT+AGG | + | chr1.4:56402739-56402758 | None:intergenic | 50.0% | |
| CACTTCGATGGATAGTCCCA+GGG | + | chr1.4:56402570-56402589 | None:intergenic | 50.0% | |
| CAGACTGGGAAATGGGATCA+GGG | - | chr1.4:56403144-56403163 | MS.gene036045:intron | 50.0% | |
| CATCCGAATCTCTTGTCACC+AGG | - | chr1.4:56400915-56400934 | MS.gene036045:CDS | 50.0% | |
| CCAAGTTCCTAGCACGATCT+CGG | + | chr1.4:56403487-56403506 | None:intergenic | 50.0% | |
| CCCCTTCTTCTGCAAGACTA+GGG | + | chr1.4:56402738-56402757 | None:intergenic | 50.0% | |
| CTTCAAGCCTTGGAAACTGC+TGG | - | chr1.4:56402907-56402926 | MS.gene036045:intron | 50.0% | |
| GCGTCTAAGTACTTCAGCAG+TGG | + | chr1.4:56403919-56403938 | None:intergenic | 50.0% | |
| GTCCCTGGTGACAAGAGATT+CGG | + | chr1.4:56400921-56400940 | None:intergenic | 50.0% | |
| TCACTTCGATGGATAGTCCC+AGG | + | chr1.4:56402571-56402590 | None:intergenic | 50.0% | |
| TCAGACTGGGAAATGGGATC+AGG | - | chr1.4:56403143-56403162 | MS.gene036045:intron | 50.0% | |
| TCGTGCTAGGAACTTGGAAG+TGG | - | chr1.4:56403490-56403509 | MS.gene036045:CDS | 50.0% | |
| ! | AACGCTGCTTTGGATCAGAC+TGG | - | chr1.4:56403129-56403148 | MS.gene036045:intron | 50.0% |
| ! | ACGCTGCTTTGGATCAGACT+GGG | - | chr1.4:56403130-56403149 | MS.gene036045:intron | 50.0% |
| ! | ATCTGAGGCACTTCAAGCCT+TGG | - | chr1.4:56402897-56402916 | MS.gene036045:intron | 50.0% |
| ! | CTTGCGGCGTTCTTTGTTTC+TGG | + | chr1.4:56401598-56401617 | None:intergenic | 50.0% |
| ! | GTCACCAGGGACTTCTTTTC+AGG | - | chr1.4:56400929-56400948 | MS.gene036045:CDS | 50.0% |
| !! | CCCTAGTCTTGCAGAAGAAG+GGG | - | chr1.4:56402735-56402754 | MS.gene036045:CDS | 50.0% |
| !! | GGCCTTTTTCACAAGGCTGA+GGG | - | chr1.4:56404029-56404048 | MS.gene036045:CDS | 50.0% |
| !! | TGGCCTTTTTCACAAGGCTG+AGG | - | chr1.4:56404028-56404047 | MS.gene036045:CDS | 50.0% |
| AGGGTAACCGAGATCGTGCT+AGG | - | chr1.4:56403477-56403496 | MS.gene036045:CDS | 55.0% | |
| ATTGCAGGAGACCGTGAGCA+AGG | - | chr1.4:56402174-56402193 | MS.gene036045:CDS | 55.0% | |
| CAGCAGTGGAGATTAGGCTG+CGG | + | chr1.4:56403905-56403924 | None:intergenic | 55.0% | |
| CAGCTCAACTGCCTTGCTCA+CGG | + | chr1.4:56402188-56402207 | None:intergenic | 55.0% | |
| CCGAGATCGTGCTAGGAACT+TGG | - | chr1.4:56403484-56403503 | MS.gene036045:CDS | 55.0% | |
| CGGAGCAGGTAAGGACTTGA+TGG | - | chr1.4:56402621-56402640 | MS.gene036045:CDS | 55.0% | |
| CGTTCTGCCAGCAGTTTCCA+AGG | + | chr1.4:56402917-56402936 | None:intergenic | 55.0% | |
| CTACGCTCAGGGGAGCAATT+GGG | - | chr1.4:56400869-56400888 | MS.gene036045:CDS | 55.0% | |
| GAAACTGCTGGCAGAACGAC+CGG | - | chr1.4:56402919-56402938 | MS.gene036045:intron | 55.0% | |
| TGGAGATTAGGCTGCGGACA+TGG | + | chr1.4:56403899-56403918 | None:intergenic | 55.0% | |
| TTCCCAGTGGCATGATGCAG+AGG | - | chr1.4:56403550-56403569 | MS.gene036045:intron | 55.0% | |
| ! | AGAGCACTTGAGAGCGTGGA+CGG | - | chr1.4:56402772-56402791 | MS.gene036045:CDS | 55.0% |
| !! | TCAGAGAGCACTTGAGAGCG+TGG | - | chr1.4:56402768-56402787 | MS.gene036045:CDS | 55.0% |
| ACGCCTCTGCATCATGCCAC+TGG | + | chr1.4:56403556-56403575 | None:intergenic | 60.0% | |
| ATTAGGCTGCGGACATGGCC+AGG | + | chr1.4:56403894-56403913 | None:intergenic | 60.0% | |
| CCAATTGCTCCCCTGAGCGT+AGG | + | chr1.4:56400871-56400890 | None:intergenic | 60.0% | |
| CCTACGCTCAGGGGAGCAAT+TGG | - | chr1.4:56400868-56400887 | MS.gene036045:CDS | 60.0% | |
| CGCCTCTGCATCATGCCACT+GGG | + | chr1.4:56403555-56403574 | None:intergenic | 60.0% | |
| GAAAGGCCGGAACACGTTCC+CGG | - | chr1.4:56402679-56402698 | MS.gene036045:CDS | 60.0% | |
| CGCTCAGGGGAGCAATTGGG+AGG | - | chr1.4:56400872-56400891 | MS.gene036045:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 56400860 | 56404139 | 56400860 | ID=MS.gene036045 |
| chr1.4 | mRNA | 56400860 | 56404139 | 56400860 | ID=MS.gene036045.t1;Parent=MS.gene036045 |
| chr1.4 | exon | 56403942 | 56404139 | 56403942 | ID=MS.gene036045.t1.exon1;Parent=MS.gene036045.t1 |
| chr1.4 | CDS | 56403942 | 56404139 | 56403942 | ID=cds.MS.gene036045.t1;Parent=MS.gene036045.t1 |
| chr1.4 | exon | 56403270 | 56403522 | 56403270 | ID=MS.gene036045.t1.exon2;Parent=MS.gene036045.t1 |
| chr1.4 | CDS | 56403270 | 56403522 | 56403270 | ID=cds.MS.gene036045.t1;Parent=MS.gene036045.t1 |
| chr1.4 | exon | 56401697 | 56402913 | 56401697 | ID=MS.gene036045.t1.exon3;Parent=MS.gene036045.t1 |
| chr1.4 | CDS | 56401697 | 56402913 | 56401697 | ID=cds.MS.gene036045.t1;Parent=MS.gene036045.t1 |
| chr1.4 | exon | 56401367 | 56401520 | 56401367 | ID=MS.gene036045.t1.exon4;Parent=MS.gene036045.t1 |
| chr1.4 | CDS | 56401367 | 56401520 | 56401367 | ID=cds.MS.gene036045.t1;Parent=MS.gene036045.t1 |
| chr1.4 | exon | 56400860 | 56401179 | 56400860 | ID=MS.gene036045.t1.exon5;Parent=MS.gene036045.t1 |
| chr1.4 | CDS | 56400860 | 56401179 | 56400860 | ID=cds.MS.gene036045.t1;Parent=MS.gene036045.t1 |
| Gene Sequence |
| Protein sequence |
