Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24475.t1 | XP_003589067.2 | 97.2 | 717 | 20 | 0 | 1 | 717 | 1 | 717 | 0.00E+00 | 1359.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24475.t1 | Q9CB03 | 56.8 | 720 | 280 | 5 | 1 | 716 | 1 | 693 | 1.6e-225 | 783.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24475.t1 | G7ICB7 | 97.2 | 717 | 20 | 0 | 1 | 717 | 1 | 717 | 0.0e+00 | 1359.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24475 | MS.gene23533 | PPI |
| MS.gene24475 | MS.gene23457 | PPI |
| MS.gene24475 | MS.gene038070 | PPI |
| MS.gene24475 | MS.gene96965 | PPI |
| MS.gene24475 | MS.gene23978 | PPI |
| MS.gene020394 | MS.gene24475 | PPI |
| MS.gene24475 | MS.gene036045 | PPI |
| MS.gene24475 | MS.gene89567 | PPI |
| MS.gene24475 | MS.gene018670 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24475.t1 | MTR_1g018040 | 97.211 | 717 | 20 | 0 | 1 | 717 | 1 | 717 | 0.0 | 1438 |
| MS.gene24475.t1 | MTR_1g069630 | 44.028 | 720 | 381 | 12 | 6 | 716 | 6 | 712 | 0.0 | 540 |
| MS.gene24475.t1 | MTR_7g097230 | 43.508 | 724 | 389 | 9 | 1 | 716 | 16 | 727 | 5.77e-180 | 531 |
| MS.gene24475.t1 | MTR_1g075480 | 43.015 | 723 | 388 | 10 | 3 | 716 | 24 | 731 | 3.69e-175 | 519 |
| MS.gene24475.t1 | MTR_1g075480 | 43.015 | 723 | 388 | 10 | 3 | 716 | 37 | 744 | 5.94e-175 | 519 |
| MS.gene24475.t1 | MTR_1g075480 | 42.837 | 726 | 388 | 11 | 3 | 716 | 37 | 747 | 8.73e-173 | 513 |
| MS.gene24475.t1 | MTR_8g071330 | 39.628 | 699 | 405 | 6 | 20 | 716 | 2 | 685 | 5.78e-167 | 496 |
| MS.gene24475.t1 | MTR_5g026810 | 40.756 | 714 | 395 | 9 | 6 | 716 | 4 | 692 | 5.22e-164 | 489 |
| MS.gene24475.t1 | MTR_1g075480 | 42.581 | 620 | 335 | 8 | 3 | 616 | 24 | 628 | 5.67e-146 | 441 |
| MS.gene24475.t1 | MTR_7g097230 | 44.444 | 549 | 292 | 7 | 1 | 541 | 16 | 559 | 4.38e-131 | 400 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24475.t1 | AT1G27460 | 56.806 | 720 | 280 | 5 | 1 | 716 | 1 | 693 | 0.0 | 820 |
| MS.gene24475.t1 | AT1G27460 | 56.667 | 720 | 277 | 5 | 1 | 716 | 1 | 689 | 0.0 | 820 |
| MS.gene24475.t1 | AT1G27460 | 58.727 | 550 | 211 | 3 | 1 | 546 | 1 | 538 | 0.0 | 655 |
| MS.gene24475.t1 | AT2G43040 | 41.903 | 704 | 377 | 9 | 24 | 716 | 18 | 700 | 7.89e-166 | 494 |
| MS.gene24475.t1 | AT2G43040 | 41.903 | 704 | 377 | 9 | 24 | 716 | 18 | 700 | 7.89e-166 | 494 |
| MS.gene24475.t1 | AT4G28600 | 40.329 | 729 | 407 | 13 | 1 | 716 | 25 | 738 | 2.62e-155 | 468 |
| MS.gene24475.t1 | AT4G28600 | 40.329 | 729 | 407 | 13 | 1 | 716 | 25 | 738 | 2.62e-155 | 468 |
| MS.gene24475.t1 | AT4G28600 | 40.027 | 732 | 410 | 14 | 1 | 716 | 25 | 743 | 1.69e-154 | 466 |
Find 139 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAGCATGATTTGGATAT+TGG | 0.161996 | 1.1:-4631292 | None:intergenic |
| GGCATTAACGGAACGGAAAT+TGG | 0.210728 | 1.1:+4632140 | MS.gene24475:intron |
| CTTCAGCTCCTCTAAGGATT+TGG | 0.281062 | 1.1:-4629683 | None:intergenic |
| ACCTGTAATATGCCAACTTC+TGG | 0.294083 | 1.1:-4632268 | None:intergenic |
| GCTTAAAGCCAAATCCTTAG+AGG | 0.300513 | 1.1:+4629675 | MS.gene24475:CDS |
| ATCTGCACAGCAGAGGTTTA+AGG | 0.303216 | 1.1:+4631649 | MS.gene24475:CDS |
| AAGATGTTGTGCGCTTGTTC+TGG | 0.315702 | 1.1:+4628829 | None:intergenic |
| CCCAGAAGTTGGCATATTAC+AGG | 0.318735 | 1.1:+4632267 | MS.gene24475:CDS |
| AGCTGCCCTACACGTGCTTC+AGG | 0.320041 | 1.1:+4629507 | MS.gene24475:CDS |
| TCTGGTCAAACCATGGAATT+TGG | 0.324195 | 1.1:+4630830 | MS.gene24475:CDS |
| AGCAGTAATAAATGCCAAAA+AGG | 0.325256 | 1.1:+4631808 | MS.gene24475:CDS |
| CTAAAGGAAGCTGCTCTAAC+TGG | 0.328347 | 1.1:+4631479 | MS.gene24475:CDS |
| GGAATTAAGATCTGTATAAA+TGG | 0.329348 | 1.1:-4632190 | None:intergenic |
| AAATTCTTGGTGTTTGTTAC+GGG | 0.330909 | 1.1:+4631390 | MS.gene24475:CDS |
| TGGAGCTGCTTCCAAATCTA+TGG | 0.333720 | 1.1:+4630760 | MS.gene24475:CDS |
| GATTGGGATGCTGAAATAAT+TGG | 0.335302 | 1.1:+4631032 | MS.gene24475:CDS |
| TCTTTGAAATTGAACTCTTT+CGG | 0.336725 | 1.1:-4631441 | None:intergenic |
| ATCAGGAAAGATGGAACTTC+AGG | 0.337312 | 1.1:+4631004 | MS.gene24475:CDS |
| GTTCAAGGCCAACAAATTCT+TGG | 0.338655 | 1.1:+4631377 | MS.gene24475:CDS |
| ATGCCTTCATGAGCATGATT+TGG | 0.338766 | 1.1:-4631299 | None:intergenic |
| GAATGCATTGACATCAAATT+AGG | 0.345332 | 1.1:-4629625 | None:intergenic |
| CTGCTAGTGGATTATCTTCA+AGG | 0.346687 | 1.1:+4628914 | MS.gene24475:CDS |
| ATGAGCATGATTTGGATATT+GGG | 0.348898 | 1.1:-4631291 | None:intergenic |
| TCCCTTGTTGCTAGGGAATC+TGG | 0.348925 | 1.1:-4628886 | None:intergenic |
| CCTGCCTTGATCCATAGATT+TGG | 0.349443 | 1.1:-4630771 | None:intergenic |
| CAAGGTTGAACCAAGCTTCA+TGG | 0.349582 | 1.1:-4632615 | None:intergenic |
| GTATTGCTTCAGCTCCTCTA+AGG | 0.354042 | 1.1:-4629689 | None:intergenic |
| CAAATTCTTGGTGTTTGTTA+CGG | 0.366837 | 1.1:+4631389 | MS.gene24475:CDS |
| TTGATACTTGGAATATAATC+AGG | 0.370501 | 1.1:-4632499 | None:intergenic |
| CAGATCCTACCAGGTATCTT+TGG | 0.380041 | 1.1:+4631116 | MS.gene24475:CDS |
| TAGGTCTCAATAGCTTGCTT+TGG | 0.380503 | 1.1:-4631773 | None:intergenic |
| ATTGAATCAGCTCTTCCTAA+TGG | 0.382528 | 1.1:+4630681 | MS.gene24475:CDS |
| ATGAAGCTGTCACTGCTTAT+CGG | 0.382570 | 1.1:+4630802 | MS.gene24475:CDS |
| AATCACTCAAACTGTTGAAC+TGG | 0.382989 | 1.1:-4632718 | None:intergenic |
| GACTGGGATGTTTGAATCAT+TGG | 0.390614 | 1.1:+4631079 | MS.gene24475:CDS |
| TGGTGAAGAATGTAAGTTGC+AGG | 0.392513 | 1.1:+4630719 | MS.gene24475:CDS |
| ATCTTCAAGGACCGGAGATT+GGG | 0.405245 | 1.1:+4628927 | MS.gene24475:CDS |
| TACCACAAGCTTTCCTCAAA+AGG | 0.405664 | 1.1:-4631208 | None:intergenic |
| TAAGGAAGCTAGAGCATTGT+TGG | 0.406121 | 1.1:+4629453 | MS.gene24475:intron |
| CTTTGACCCCAAGGATGATC+AGG | 0.411023 | 1.1:+4629545 | MS.gene24475:CDS |
| ATGTTACTCATTGATGTTGT+TGG | 0.414395 | 1.1:-4630951 | None:intergenic |
| ATTAATTCTATCAGGAAAGA+TGG | 0.416682 | 1.1:+4630995 | MS.gene24475:CDS |
| TATCTTCAAGGACCGGAGAT+TGG | 0.417079 | 1.1:+4628926 | MS.gene24475:CDS |
| CAATAGCCCTGATCATCCTT+GGG | 0.421432 | 1.1:-4629552 | None:intergenic |
| TTAGCTACCACACTGCTCTA+TGG | 0.426482 | 1.1:+4630885 | MS.gene24475:CDS |
| CAAGGCTAAACATCACTTCC+AGG | 0.427334 | 1.1:-4631511 | None:intergenic |
| AACAAACACCAAGAATTTGT+TGG | 0.430010 | 1.1:-4631385 | None:intergenic |
| ATACCGTCCGGCATTCCATT+AGG | 0.430679 | 1.1:-4630696 | None:intergenic |
| AAGGAAGCTAGAGCATTGTT+GGG | 0.432906 | 1.1:+4629454 | MS.gene24475:intron |
| TTCGCAGTTGAATTGATACT+TGG | 0.437568 | 1.1:-4632511 | None:intergenic |
| TAATTTGATGTCAATGCATT+CGG | 0.439900 | 1.1:+4629627 | MS.gene24475:CDS |
| AATGGAATGCCGGACGGTAT+TGG | 0.439989 | 1.1:+4630699 | MS.gene24475:CDS |
| AGAGTCTTTGAACTTTCTAA+AGG | 0.441000 | 1.1:+4631463 | MS.gene24475:CDS |
| TTTAATGAATGCTTTGCGAT+TGG | 0.441748 | 1.1:+4632582 | MS.gene24475:CDS |
| CTCCTTGGCTCCAAATTCCA+TGG | 0.442330 | 1.1:-4630840 | None:intergenic |
| TGTAGACAGGCCAACCTCCT+TGG | 0.444748 | 1.1:-4630855 | None:intergenic |
| GAAGCAGCTCCAATGCTTTG+TGG | 0.446303 | 1.1:-4630749 | None:intergenic |
| CACTGCTTATCGGCGTGCTC+TGG | 0.446793 | 1.1:+4630812 | MS.gene24475:CDS |
| CCTTCTCATTTGCAAGTGAA+TGG | 0.448121 | 1.1:+4630927 | MS.gene24475:CDS |
| TGGAACTTCAGGAAATAGAT+TGG | 0.449360 | 1.1:+4631015 | MS.gene24475:CDS |
| AATGGAAGCATGGCAAGATA+TGG | 0.451345 | 1.1:+4632164 | MS.gene24475:CDS |
| CCTGTAATATGCCAACTTCT+GGG | 0.451772 | 1.1:-4632267 | None:intergenic |
| GCAATAGCCCTGATCATCCT+TGG | 0.456274 | 1.1:-4629553 | None:intergenic |
| GCTCTTTGTTACAGTGCAGC+AGG | 0.459269 | 1.1:+4631164 | MS.gene24475:CDS |
| CATGAAGCTTGGTTCAACCT+TGG | 0.464895 | 1.1:+4632616 | MS.gene24475:CDS |
| GCAAAATTGCCTCAAGAAGC+AGG | 0.465479 | 1.1:-4629654 | None:intergenic |
| AACGGAACGGAAATTGGAAA+TGG | 0.469615 | 1.1:+4632146 | MS.gene24475:CDS |
| GCGAAGTTGTTGATTAAACT+TGG | 0.469791 | 1.1:+4632529 | MS.gene24475:CDS |
| GTATCTTTGGTCGAGCTGAT+AGG | 0.477271 | 1.1:+4631129 | MS.gene24475:CDS |
| TTTGCACCAAACAAATATGA+AGG | 0.477963 | 1.1:-4631260 | None:intergenic |
| AGGTAGCACAGTACCCGCTT+TGG | 0.485220 | 1.1:-4629605 | None:intergenic |
| AACCAAGCTTCATGGTTTGT+CGG | 0.489345 | 1.1:-4632607 | None:intergenic |
| AGCTGCCTCATTAAACTATG+AGG | 0.510001 | 1.1:+4629002 | MS.gene24475:CDS |
| GGAACTTCAGGAAATAGATT+GGG | 0.515192 | 1.1:+4631016 | MS.gene24475:CDS |
| CTGGAAGTGATGTTTAGCCT+TGG | 0.516338 | 1.1:+4631512 | MS.gene24475:CDS |
| AGCTTGGTTCAACCTTGGAT+TGG | 0.519014 | 1.1:+4632621 | MS.gene24475:CDS |
| GAGGTTGGCCTGTCTACAAA+AGG | 0.519839 | 1.1:+4630860 | MS.gene24475:CDS |
| TTCGGTGAGCCTGCTTCTTG+AGG | 0.520356 | 1.1:+4629645 | MS.gene24475:CDS |
| AGCTCTTCCTAATGGAATGC+CGG | 0.522614 | 1.1:+4630689 | MS.gene24475:CDS |
| AACAAATATGAAGGAAAATG+AGG | 0.527041 | 1.1:-4631251 | None:intergenic |
| GCTGCCCTACACGTGCTTCA+GGG | 0.528614 | 1.1:+4629508 | MS.gene24475:CDS |
| TTCTACCTCATAGTTTAATG+AGG | 0.529150 | 1.1:-4629007 | None:intergenic |
| GAGTTTGCTTTAGATGACAC+TGG | 0.530754 | 1.1:+4631689 | MS.gene24475:CDS |
| TTATCTATCAGAGGCTGCAA+AGG | 0.535927 | 1.1:+4630635 | MS.gene24475:intron |
| AACCGACAAACCATGAAGCT+TGG | 0.536001 | 1.1:+4632605 | MS.gene24475:CDS |
| GAATTTGGAGCCAAGGAGGT+TGG | 0.536228 | 1.1:+4630845 | MS.gene24475:CDS |
| AATACCCTGAAGCACGTGTA+GGG | 0.536742 | 1.1:-4629512 | None:intergenic |
| AACCATGGAATTTGGAGCCA+AGG | 0.539099 | 1.1:+4630838 | MS.gene24475:CDS |
| AGGAAACCTCGGTCCAAAGC+GGG | 0.539136 | 1.1:+4629592 | MS.gene24475:CDS |
| CAGCTTATCAAAACATAATG+AGG | 0.540674 | 1.1:+4631567 | MS.gene24475:CDS |
| GCTTCCAAATCTATGGATCA+AGG | 0.541459 | 1.1:+4630767 | MS.gene24475:CDS |
| GGAAATGTTCCACAAAGCAT+TGG | 0.544581 | 1.1:+4630740 | MS.gene24475:CDS |
| CACCAGATTCCCTAGCAACA+AGG | 0.550084 | 1.1:+4628884 | MS.gene24475:CDS |
| TGAAGCTCAATCATTATACA+AGG | 0.550824 | 1.1:+4632438 | MS.gene24475:CDS |
| TACTGCTAACAAGGTTCTGT+AGG | 0.552206 | 1.1:-4631792 | None:intergenic |
| TATCCAAATCATGCTCATGA+AGG | 0.553335 | 1.1:+4631296 | MS.gene24475:CDS |
| CCAAATCTATGGATCAAGGC+AGG | 0.554355 | 1.1:+4630771 | MS.gene24475:CDS |
| GGCATTTATTACTGCTAACA+AGG | 0.557549 | 1.1:-4631801 | None:intergenic |
| TCACTTGCAAATGAGAAGGT+AGG | 0.565027 | 1.1:-4630923 | None:intergenic |
| CATTCTTCACCAATACCGTC+CGG | 0.570943 | 1.1:-4630708 | None:intergenic |
| AGTTTGCTTTAGATGACACT+GGG | 0.572182 | 1.1:+4631690 | MS.gene24475:CDS |
| TTGGAAGTTCTACAAGAGGT+TGG | 0.572389 | 1.1:+4631606 | MS.gene24475:CDS |
| AAGCTAGAGCATTGTTGGGG+AGG | 0.574341 | 1.1:+4629458 | MS.gene24475:CDS |
| TGTGTAGAGCAGATCCTACC+AGG | 0.574842 | 1.1:+4631107 | MS.gene24475:CDS |
| AATTCTTGGTGTTTGTTACG+GGG | 0.575668 | 1.1:+4631391 | MS.gene24475:CDS |
| AGTGGATTATCTTCAAGGAC+CGG | 0.579646 | 1.1:+4628919 | MS.gene24475:CDS |
| TTGCTGAAAGAAACAAGCTA+AGG | 0.596133 | 1.1:+4629572 | MS.gene24475:CDS |
| AGGTACTCAGACATGATGGT+TGG | 0.597729 | 1.1:+4631587 | MS.gene24475:CDS |
| ACAGTACCCGCTTTGGACCG+AGG | 0.599977 | 1.1:-4629598 | None:intergenic |
| CCATTCACTTGCAAATGAGA+AGG | 0.606529 | 1.1:-4630927 | None:intergenic |
| GACTTGAAAATGCAATTCAG+AGG | 0.608528 | 1.1:+4631534 | MS.gene24475:CDS |
| ACCAGATTCCCTAGCAACAA+GGG | 0.610031 | 1.1:+4628885 | MS.gene24475:CDS |
| AATGAGGTACTCAGACATGA+TGG | 0.610964 | 1.1:+4631583 | MS.gene24475:CDS |
| CTTCCTAATGGAATGCCGGA+CGG | 0.613074 | 1.1:+4630693 | MS.gene24475:CDS |
| GGAAATTGGAAATGGAAGCA+TGG | 0.614368 | 1.1:+4632154 | MS.gene24475:CDS |
| AAAGGAGTGCAGAACAATTG+TGG | 0.615821 | 1.1:+4630653 | MS.gene24475:CDS |
| ATGGTTGGAAGTTCTACAAG+AGG | 0.617168 | 1.1:+4631602 | MS.gene24475:CDS |
| AGGAAGCTAGAGCATTGTTG+GGG | 0.619715 | 1.1:+4629455 | MS.gene24475:intron |
| GGCGTGCTCTGGTCAAACCA+TGG | 0.623621 | 1.1:+4630823 | MS.gene24475:CDS |
| TCATAGTATCTGCACAGCAG+AGG | 0.625009 | 1.1:+4631642 | MS.gene24475:CDS |
| GCTACCACACTGCTCTATGG+TGG | 0.625696 | 1.1:+4630888 | MS.gene24475:CDS |
| CAATACCCTGAAGCACGTGT+AGG | 0.628701 | 1.1:-4629513 | None:intergenic |
| ACATCAGTACTTTGACCCCA+AGG | 0.628904 | 1.1:+4629536 | MS.gene24475:CDS |
| TCAGCTCGACCAAAGATACC+TGG | 0.629775 | 1.1:-4631125 | None:intergenic |
| CATGGAATTTGGAGCCAAGG+AGG | 0.631501 | 1.1:+4630841 | MS.gene24475:CDS |
| GCTAGGGAATCTGGTGACTG+TGG | 0.633643 | 1.1:-4628877 | None:intergenic |
| TCTTTGGTCGAGCTGATAGG+TGG | 0.642084 | 1.1:+4631132 | MS.gene24475:CDS |
| GAAACAAGCTAAGGAAACCT+CGG | 0.642850 | 1.1:+4629581 | MS.gene24475:CDS |
| TGCAGCTAGAACATCTGTAG+TGG | 0.650193 | 1.1:+4631415 | MS.gene24475:CDS |
| GGAGGCTTGAATATCAAAGA+GGG | 0.650810 | 1.1:+4629476 | MS.gene24475:CDS |
| TTTGACCCCAAGGATGATCA+GGG | 0.657698 | 1.1:+4629546 | MS.gene24475:CDS |
| AGAGCAACACAAATTTGAAG+AGG | 0.660585 | 1.1:+4628852 | MS.gene24475:CDS |
| GGGAGGCTTGAATATCAAAG+AGG | 0.664217 | 1.1:+4629475 | MS.gene24475:CDS |
| GAGGAGCTGAAGCAATACAC+TGG | 0.667577 | 1.1:+4629694 | MS.gene24475:CDS |
| TCTAACTGGAAATAATGACC+TGG | 0.685371 | 1.1:+4631493 | MS.gene24475:CDS |
| AATAGCCCTGATCATCCTTG+GGG | 0.686368 | 1.1:-4629551 | None:intergenic |
| AAGGAAACCTCGGTCCAAAG+CGG | 0.708975 | 1.1:+4629591 | MS.gene24475:CDS |
| CTCGACCAAAGATACCTGGT+AGG | 0.732247 | 1.1:-4631121 | None:intergenic |
| AACACCACCATAGAGCAGTG+TGG | 0.767738 | 1.1:-4630892 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATAAACACGTTA+TGG | - | chr1.1:4629288-4629307 | None:intergenic | 15.0% |
| !! | TATTGCATATAATAATGTAA+AGG | - | chr1.1:4631972-4631991 | None:intergenic | 15.0% |
| !!! | ATGTAAAGGATTATTTTTAA+TGG | - | chr1.1:4631958-4631977 | None:intergenic | 15.0% |
| !!! | ATTAGTGATTTGTTAATATA+TGG | - | chr1.1:4632379-4632398 | None:intergenic | 15.0% |
| !!! | TATTTTCTGCTAATATTAAT+TGG | + | chr1.1:4629356-4629375 | MS.gene24475:intron | 15.0% |
| !! | AATATGCAATTACATGATTA+TGG | + | chr1.1:4632396-4632415 | MS.gene24475:intron | 20.0% |
| !! | ACAAGATAATGATTATATGA+AGG | - | chr1.1:4629728-4629747 | None:intergenic | 20.0% |
| !! | GAAATTCTTGTTAAAAATTC+AGG | - | chr1.1:4632099-4632118 | None:intergenic | 20.0% |
| !!! | CTTTTGTTATTAATTCTATC+AGG | + | chr1.1:4630987-4631006 | MS.gene24475:CDS | 20.0% |
| ! | AAAATGTTGTTAGAGAGTAA+AGG | - | chr1.1:4629042-4629061 | None:intergenic | 25.0% |
| ! | AACAAATATGAAGGAAAATG+AGG | - | chr1.1:4631254-4631273 | None:intergenic | 25.0% |
| ! | AATATGAATTGATGCTAACA+TGG | - | chr1.1:4629859-4629878 | None:intergenic | 25.0% |
| ! | AGAACAAAACTTTCAGTAAT+TGG | - | chr1.1:4630488-4630507 | None:intergenic | 25.0% |
| ! | AGAGAAAAATTCTAGCAATT+GGG | - | chr1.1:4632247-4632266 | None:intergenic | 25.0% |
| ! | AGATAATGATTATATGAAGG+TGG | - | chr1.1:4629725-4629744 | None:intergenic | 25.0% |
| ! | ATTAATTCTATCAGGAAAGA+TGG | + | chr1.1:4630995-4631014 | MS.gene24475:CDS | 25.0% |
| ! | CAAAACAACAATGTACATTA+TGG | - | chr1.1:4629762-4629781 | None:intergenic | 25.0% |
| ! | CATAATGTAACAGCATTTAT+AGG | - | chr1.1:4630569-4630588 | None:intergenic | 25.0% |
| ! | GCAATAACTTTCATTTATTG+TGG | + | chr1.1:4631986-4632005 | MS.gene24475:intron | 25.0% |
| ! | GGAATTAAGATCTGTATAAA+TGG | - | chr1.1:4632193-4632212 | None:intergenic | 25.0% |
| ! | GTTAATATATGGTAATACCA+AGG | - | chr1.1:4632368-4632387 | None:intergenic | 25.0% |
| ! | TAATTTGATGTCAATGCATT+CGG | + | chr1.1:4629627-4629646 | MS.gene24475:CDS | 25.0% |
| ! | TGATCAAGCAAAAATATTCA+GGG | + | chr1.1:4631862-4631881 | MS.gene24475:CDS | 25.0% |
| ! | TTGATACTTGGAATATAATC+AGG | - | chr1.1:4632502-4632521 | None:intergenic | 25.0% |
| ! | TTGATCAAGCAAAAATATTC+AGG | + | chr1.1:4631861-4631880 | MS.gene24475:CDS | 25.0% |
| ! | TTGTTTGTCATAATAGCTTA+TGG | + | chr1.1:4629332-4629351 | MS.gene24475:intron | 25.0% |
| !! | CATTTTCCTTCATATTTGTT+TGG | + | chr1.1:4631254-4631273 | MS.gene24475:CDS | 25.0% |
| !!! | ATTGTTGTTTTGTTTGATTG+AGG | + | chr1.1:4629770-4629789 | MS.gene24475:intron | 25.0% |
| !!! | TCTTTGAAATTGAACTCTTT+CGG | - | chr1.1:4631444-4631463 | None:intergenic | 25.0% |
| AACAAACACCAAGAATTTGT+TGG | - | chr1.1:4631388-4631407 | None:intergenic | 30.0% | |
| ACATTGTTGCATTGTTTGAT+TGG | + | chr1.1:4630106-4630125 | MS.gene24475:intron | 30.0% | |
| ACTTTCATTTATTGTGGTAC+AGG | + | chr1.1:4631992-4632011 | MS.gene24475:intron | 30.0% | |
| AGAGTCTTTGAACTTTCTAA+AGG | + | chr1.1:4631463-4631482 | MS.gene24475:CDS | 30.0% | |
| AGCAGTAATAAATGCCAAAA+AGG | + | chr1.1:4631808-4631827 | MS.gene24475:CDS | 30.0% | |
| ATGTTACTCATTGATGTTGT+TGG | - | chr1.1:4630954-4630973 | None:intergenic | 30.0% | |
| ATTAAAAAGCTTCTTGCTAG+TGG | - | chr1.1:4632568-4632587 | None:intergenic | 30.0% | |
| CAATGCAACAATGTAGATTA+TGG | - | chr1.1:4630100-4630119 | None:intergenic | 30.0% | |
| CAGCTTATCAAAACATAATG+AGG | + | chr1.1:4631567-4631586 | MS.gene24475:CDS | 30.0% | |
| CATAATGTAGCAGCATTTAT+AGG | - | chr1.1:4630223-4630242 | None:intergenic | 30.0% | |
| CATAATGTAGTAGCATTTAC+AGG | - | chr1.1:4629890-4629909 | None:intergenic | 30.0% | |
| CATTGTTGCATTGTTTGATT+GGG | + | chr1.1:4630107-4630126 | MS.gene24475:intron | 30.0% | |
| CTGCAAAATATGAAAAGCAA+GGG | - | chr1.1:4632121-4632140 | None:intergenic | 30.0% | |
| GAGAGAAAAATTCTAGCAAT+TGG | - | chr1.1:4632248-4632267 | None:intergenic | 30.0% | |
| GCAATTCGTATTGTATTTGT+GGG | + | chr1.1:4629067-4629086 | MS.gene24475:intron | 30.0% | |
| TAAAACTCAAAACACTGCAA+CGG | - | chr1.1:4630290-4630309 | None:intergenic | 30.0% | |
| TCTCTCTATCACAATTCAAA+AGG | - | chr1.1:4629123-4629142 | None:intergenic | 30.0% | |
| TGAAGCTCAATCATTATACA+AGG | + | chr1.1:4632438-4632457 | MS.gene24475:CDS | 30.0% | |
| TGCAATTCGTATTGTATTTG+TGG | + | chr1.1:4629066-4629085 | MS.gene24475:intron | 30.0% | |
| TTCTACCTCATAGTTTAATG+AGG | - | chr1.1:4629010-4629029 | None:intergenic | 30.0% | |
| TTTAATGAATGCTTTGCGAT+TGG | + | chr1.1:4632582-4632601 | MS.gene24475:CDS | 30.0% | |
| TTTGCACCAAACAAATATGA+AGG | - | chr1.1:4631263-4631282 | None:intergenic | 30.0% | |
| ! | ATGAGCATGATTTGGATATT+GGG | - | chr1.1:4631294-4631313 | None:intergenic | 30.0% |
| ! | GAATGCATTGACATCAAATT+AGG | - | chr1.1:4629628-4629647 | None:intergenic | 30.0% |
| ! | TCATATTTTGCAGGCATTAA+CGG | + | chr1.1:4632128-4632147 | MS.gene24475:intron | 30.0% |
| !! | AAAATGCTCATTTTGATGCT+TGG | - | chr1.1:4631354-4631373 | None:intergenic | 30.0% |
| !! | AAATTCTTGGTGTTTGTTAC+GGG | + | chr1.1:4631390-4631409 | MS.gene24475:CDS | 30.0% |
| !! | CAAATTCTTGGTGTTTGTTA+CGG | + | chr1.1:4631389-4631408 | MS.gene24475:CDS | 30.0% |
| !!! | AATGAGCATTTTTTGGTTCA+AGG | + | chr1.1:4631362-4631381 | MS.gene24475:CDS | 30.0% |
| !!! | GCATCAAAATGAGCATTTTT+TGG | + | chr1.1:4631355-4631374 | MS.gene24475:CDS | 30.0% |
| !!! | GCTTATTTTATCAGTGGAAA+TGG | + | chr1.1:4629242-4629261 | MS.gene24475:intron | 30.0% |
| !!! | TCTGATGCTTATTTTATCAG+TGG | + | chr1.1:4629236-4629255 | MS.gene24475:intron | 30.0% |
| AACACACTTTGATCCTAACA+TGG | - | chr1.1:4630538-4630557 | None:intergenic | 35.0% | |
| AACGTGTAGACATATTGATC+AGG | - | chr1.1:4630411-4630430 | None:intergenic | 35.0% | |
| AAGTTGGCATATTACAGGTA+TGG | + | chr1.1:4632272-4632291 | MS.gene24475:intron | 35.0% | |
| ACATGATTATGGCAATGACA+GGG | + | chr1.1:4632407-4632426 | MS.gene24475:intron | 35.0% | |
| ACGTGTAGACATATTGATCA+GGG | - | chr1.1:4630410-4630429 | None:intergenic | 35.0% | |
| AGAAAAATCCCTTGTTGCTA+GGG | - | chr1.1:4628896-4628915 | None:intergenic | 35.0% | |
| AGAGCAACACAAATTTGAAG+AGG | + | chr1.1:4628852-4628871 | MS.gene24475:CDS | 35.0% | |
| AGCAAAAATATTCAGGGATG+AGG | + | chr1.1:4631868-4631887 | MS.gene24475:CDS | 35.0% | |
| ATAAACACGTTATGGTATGC+TGG | - | chr1.1:4629280-4629299 | None:intergenic | 35.0% | |
| ATCAAACAATACCACAACGA+AGG | - | chr1.1:4630442-4630461 | None:intergenic | 35.0% | |
| ATTCGTATTGTATTTGTGGG+TGG | + | chr1.1:4629070-4629089 | MS.gene24475:intron | 35.0% | |
| ATTGAATCAGCTCTTCCTAA+TGG | + | chr1.1:4630681-4630700 | MS.gene24475:CDS | 35.0% | |
| CCTGCAAAATATGAAAAGCA+AGG | - | chr1.1:4632122-4632141 | None:intergenic | 35.0% | |
| CTTGAACAAATCTCCATGTT+AGG | + | chr1.1:4630522-4630541 | MS.gene24475:intron | 35.0% | |
| GAATTGTGATAGAGAGATGA+TGG | + | chr1.1:4629126-4629145 | MS.gene24475:intron | 35.0% | |
| GACTTGAAAATGCAATTCAG+AGG | + | chr1.1:4631534-4631553 | MS.gene24475:CDS | 35.0% | |
| GATTGGGATGCTGAAATAAT+TGG | + | chr1.1:4631032-4631051 | MS.gene24475:CDS | 35.0% | |
| GGAACTTCAGGAAATAGATT+GGG | + | chr1.1:4631016-4631035 | MS.gene24475:CDS | 35.0% | |
| GGCATTTATTACTGCTAACA+AGG | - | chr1.1:4631804-4631823 | None:intergenic | 35.0% | |
| GTGTAAAAGAGATGATGATC+AGG | - | chr1.1:4630072-4630091 | None:intergenic | 35.0% | |
| TACATGATTATGGCAATGAC+AGG | + | chr1.1:4632406-4632425 | MS.gene24475:intron | 35.0% | |
| TATCCAAATCATGCTCATGA+AGG | + | chr1.1:4631296-4631315 | MS.gene24475:CDS | 35.0% | |
| TCTAACTGGAAATAATGACC+TGG | + | chr1.1:4631493-4631512 | MS.gene24475:CDS | 35.0% | |
| TGGAACTTCAGGAAATAGAT+TGG | + | chr1.1:4631015-4631034 | MS.gene24475:CDS | 35.0% | |
| TTATCAGTGGAAATGGAAAC+AGG | + | chr1.1:4629249-4629268 | MS.gene24475:intron | 35.0% | |
| TTCGCAGTTGAATTGATACT+TGG | - | chr1.1:4632514-4632533 | None:intergenic | 35.0% | |
| TTGATCAGGGTTTCAAATTG+CGG | - | chr1.1:4630397-4630416 | None:intergenic | 35.0% | |
| TTGCTGAAAGAAACAAGCTA+AGG | + | chr1.1:4629572-4629591 | MS.gene24475:CDS | 35.0% | |
| ! | AACTAGAGAGAATGCGTTTT+TGG | + | chr1.1:4629154-4629173 | MS.gene24475:intron | 35.0% |
| ! | AATTTTTCTCTCCCAGAAGT+TGG | + | chr1.1:4632256-4632275 | MS.gene24475:CDS | 35.0% |
| ! | ACAAGCTTTTGCATCAAGAA+AGG | - | chr1.1:4632214-4632233 | None:intergenic | 35.0% |
| ! | ACATTTTCGCTTTCAATGAC+TGG | + | chr1.1:4631062-4631081 | MS.gene24475:CDS | 35.0% |
| ! | AGCTAAATCCTTTTGTAGAC+AGG | - | chr1.1:4630871-4630890 | None:intergenic | 35.0% |
| ! | AGTTTGCTTTAGATGACACT+GGG | + | chr1.1:4631690-4631709 | MS.gene24475:CDS | 35.0% |
| ! | CATGAGCATGATTTGGATAT+TGG | - | chr1.1:4631295-4631314 | None:intergenic | 35.0% |
| ! | CATTTTCGCTTTCAATGACT+GGG | + | chr1.1:4631063-4631082 | MS.gene24475:CDS | 35.0% |
| ! | GCGAAGTTGTTGATTAAACT+TGG | + | chr1.1:4632529-4632548 | MS.gene24475:CDS | 35.0% |
| ! | TTGAAGCGAAATCTCCTTTT+TGG | - | chr1.1:4631825-4631844 | None:intergenic | 35.0% |
| !! | AATTCTTGGTGTTTGTTACG+GGG | + | chr1.1:4631391-4631410 | MS.gene24475:CDS | 35.0% |
| !! | CCTTGCTTTTCATATTTTGC+AGG | + | chr1.1:4632119-4632138 | MS.gene24475:intron | 35.0% |
| !! | CCTTGGATTGGTTTCAAAAA+TGG | + | chr1.1:4632633-4632652 | MS.gene24475:CDS | 35.0% |
| !! | GGATTGGTTTCAAAAATGGA+GGG | + | chr1.1:4632637-4632656 | MS.gene24475:CDS | 35.0% |
| !! | TGGATTGGTTTCAAAAATGG+AGG | + | chr1.1:4632636-4632655 | MS.gene24475:CDS | 35.0% |
| !!! | CCATTTTTGAAACCAATCCA+AGG | - | chr1.1:4632636-4632655 | None:intergenic | 35.0% |
| !!! | GAATTGCATTTTCAAGTCCA+AGG | - | chr1.1:4631532-4631551 | None:intergenic | 35.0% |
| !!! | TAGTTTTGAATCCCAATCTC+CGG | - | chr1.1:4628941-4628960 | None:intergenic | 35.0% |
| AACGGAACGGAAATTGGAAA+TGG | + | chr1.1:4632146-4632165 | MS.gene24475:CDS | 40.0% | |
| AAGATGCAGCTACAATGTTG+CGG | - | chr1.1:4630364-4630383 | None:intergenic | 40.0% | |
| AAGCATCAGAGAAGACATTC+TGG | - | chr1.1:4629226-4629245 | None:intergenic | 40.0% | |
| AATCACAGTAGAACCCACAA+AGG | - | chr1.1:4629959-4629978 | None:intergenic | 40.0% | |
| ACCTGTAATATGCCAACTTC+TGG | - | chr1.1:4632271-4632290 | None:intergenic | 40.0% | |
| AGATGCACAGCTGAAACATT+CGG | - | chr1.1:4632339-4632358 | None:intergenic | 40.0% | |
| AGCTGCCTCATTAAACTATG+AGG | + | chr1.1:4629002-4629021 | MS.gene24475:CDS | 40.0% | |
| ATCAGGAAAGATGGAACTTC+AGG | + | chr1.1:4631004-4631023 | MS.gene24475:CDS | 40.0% | |
| ATGAAGCTGTCACTGCTTAT+CGG | + | chr1.1:4630802-4630821 | MS.gene24475:CDS | 40.0% | |
| ATGCCTTCATGAGCATGATT+TGG | - | chr1.1:4631302-4631321 | None:intergenic | 40.0% | |
| ATGGTTGGAAGTTCTACAAG+AGG | + | chr1.1:4631602-4631621 | MS.gene24475:CDS | 40.0% | |
| CAATACCACAACGAAGGTTA+TGG | - | chr1.1:4630436-4630455 | None:intergenic | 40.0% | |
| CAGAAAAATCCCTTGTTGCT+AGG | - | chr1.1:4628897-4628916 | None:intergenic | 40.0% | |
| CATGGAGATTGTTCAAGACT+TGG | - | chr1.1:4629841-4629860 | None:intergenic | 40.0% | |
| CCATTCACTTGCAAATGAGA+AGG | - | chr1.1:4630930-4630949 | None:intergenic | 40.0% | |
| CCTGTAATATGCCAACTTCT+GGG | - | chr1.1:4632270-4632289 | None:intergenic | 40.0% | |
| CCTTCTCATTTGCAAGTGAA+TGG | + | chr1.1:4630927-4630946 | MS.gene24475:CDS | 40.0% | |
| CGTGATCTTGCTTTGTGATA+CGG | + | chr1.1:4630243-4630262 | MS.gene24475:intron | 40.0% | |
| GAAACAAGCTAAGGAAACCT+CGG | + | chr1.1:4629581-4629600 | MS.gene24475:CDS | 40.0% | |
| GACTGGGATGTTTGAATCAT+TGG | + | chr1.1:4631079-4631098 | MS.gene24475:CDS | 40.0% | |
| GCTTAAAGCCAAATCCTTAG+AGG | + | chr1.1:4629675-4629694 | MS.gene24475:CDS | 40.0% | |
| GCTTCCAAATCTATGGATCA+AGG | + | chr1.1:4630767-4630786 | MS.gene24475:CDS | 40.0% | |
| GGAAATGTTCCACAAAGCAT+TGG | + | chr1.1:4630740-4630759 | MS.gene24475:CDS | 40.0% | |
| GGAAATTGGAAATGGAAGCA+TGG | + | chr1.1:4632154-4632173 | MS.gene24475:CDS | 40.0% | |
| GGAGGCTTGAATATCAAAGA+GGG | + | chr1.1:4629476-4629495 | MS.gene24475:CDS | 40.0% | |
| GGTCATTGCAAACTACTTTG+CGG | + | chr1.1:4630264-4630283 | MS.gene24475:intron | 40.0% | |
| GTTCAAGGCCAACAAATTCT+TGG | + | chr1.1:4631377-4631396 | MS.gene24475:CDS | 40.0% | |
| TACCACAAGCTTTCCTCAAA+AGG | - | chr1.1:4631211-4631230 | None:intergenic | 40.0% | |
| TACTGCTAACAAGGTTCTGT+AGG | - | chr1.1:4631795-4631814 | None:intergenic | 40.0% | |
| TATGGAACTTGAACACTGCT+TGG | + | chr1.1:4632290-4632309 | MS.gene24475:intron | 40.0% | |
| TCACTTGCAAATGAGAAGGT+AGG | - | chr1.1:4630926-4630945 | None:intergenic | 40.0% | |
| TCAGGAGCTGAATCTAAACT+AGG | - | chr1.1:4632081-4632100 | None:intergenic | 40.0% | |
| TCTGGTCAAACCATGGAATT+TGG | + | chr1.1:4630830-4630849 | MS.gene24475:CDS | 40.0% | |
| TGATCAGGGTTTCAAATTGC+GGG | - | chr1.1:4630396-4630415 | None:intergenic | 40.0% | |
| TGGGTGGCTGAAATTACATT+TGG | + | chr1.1:4629086-4629105 | MS.gene24475:intron | 40.0% | |
| TGGTGAAGAATGTAAGTTGC+AGG | + | chr1.1:4630719-4630738 | MS.gene24475:CDS | 40.0% | |
| TTATCTATCAGAGGCTGCAA+AGG | + | chr1.1:4630635-4630654 | MS.gene24475:intron | 40.0% | |
| TTGGAAGTTCTACAAGAGGT+TGG | + | chr1.1:4631606-4631625 | MS.gene24475:CDS | 40.0% | |
| ! | AAAGGAGTGCAGAACAATTG+TGG | + | chr1.1:4630653-4630672 | MS.gene24475:CDS | 40.0% |
| ! | AACCAAGCTTCATGGTTTGT+CGG | - | chr1.1:4632610-4632629 | None:intergenic | 40.0% |
| ! | AATGAGGTACTCAGACATGA+TGG | + | chr1.1:4631583-4631602 | MS.gene24475:CDS | 40.0% |
| ! | AATGGAAGCATGGCAAGATA+TGG | + | chr1.1:4632164-4632183 | MS.gene24475:CDS | 40.0% |
| ! | ACAAGGGATTTTTCTGCTAG+TGG | + | chr1.1:4628901-4628920 | MS.gene24475:CDS | 40.0% |
| ! | GAGTTTGCTTTAGATGACAC+TGG | + | chr1.1:4631689-4631708 | MS.gene24475:CDS | 40.0% |
| ! | GCTGCTTTCTTATCTATCAG+AGG | + | chr1.1:4630626-4630645 | MS.gene24475:intron | 40.0% |
| ! | GTTTCAGCTGTGCATCTTTT+TGG | + | chr1.1:4632342-4632361 | MS.gene24475:intron | 40.0% |
| ! | GTTTTCCATAACCTTCGTTG+TGG | + | chr1.1:4630428-4630447 | MS.gene24475:intron | 40.0% |
| ! | TTTTGCAGGCATTAACGGAA+CGG | + | chr1.1:4632133-4632152 | MS.gene24475:intron | 40.0% |
| !! | AACCTTTTGAGGAAAGCTTG+TGG | + | chr1.1:4631206-4631225 | MS.gene24475:CDS | 40.0% |
| !! | AAGGAAGCTAGAGCATTGTT+GGG | + | chr1.1:4629454-4629473 | MS.gene24475:intron | 40.0% |
| !! | AGTGGATTATCTTCAAGGAC+CGG | + | chr1.1:4628919-4628938 | MS.gene24475:CDS | 40.0% |
| !! | CTGCTAGTGGATTATCTTCA+AGG | + | chr1.1:4628914-4628933 | MS.gene24475:CDS | 40.0% |
| !! | TAAGGAAGCTAGAGCATTGT+TGG | + | chr1.1:4629453-4629472 | MS.gene24475:intron | 40.0% |
| !! | TAGGTCTCAATAGCTTGCTT+TGG | - | chr1.1:4631776-4631795 | None:intergenic | 40.0% |
| !! | TGTGTTTTTGCTGTGTGATG+CGG | + | chr1.1:4629910-4629929 | MS.gene24475:intron | 40.0% |
| !!! | GTGTGTGTTCGTTACTTTTG+AGG | + | chr1.1:4631890-4631909 | MS.gene24475:intron | 40.0% |
| AACCGACAAACCATGAAGCT+TGG | + | chr1.1:4632605-4632624 | MS.gene24475:CDS | 45.0% | |
| AACCTCATAATGCCGCAATG+TGG | - | chr1.1:4630331-4630350 | None:intergenic | 45.0% | |
| AATACCCTGAAGCACGTGTA+GGG | - | chr1.1:4629515-4629534 | None:intergenic | 45.0% | |
| AATAGCCCTGATCATCCTTG+GGG | - | chr1.1:4629554-4629573 | None:intergenic | 45.0% | |
| ACATCAGTACTTTGACCCCA+AGG | + | chr1.1:4629536-4629555 | MS.gene24475:CDS | 45.0% | |
| ACCAGATTCCCTAGCAACAA+GGG | + | chr1.1:4628885-4628904 | MS.gene24475:CDS | 45.0% | |
| AGCTCTTCCTAATGGAATGC+CGG | + | chr1.1:4630689-4630708 | MS.gene24475:CDS | 45.0% | |
| AGCTTGGTTCAACCTTGGAT+TGG | + | chr1.1:4632621-4632640 | MS.gene24475:CDS | 45.0% | |
| AGGTACTCAGACATGATGGT+TGG | + | chr1.1:4631587-4631606 | MS.gene24475:CDS | 45.0% | |
| ATCTGCACAGCAGAGGTTTA+AGG | + | chr1.1:4631649-4631668 | MS.gene24475:CDS | 45.0% | |
| ATCTTCAAGGACCGGAGATT+GGG | + | chr1.1:4628927-4628946 | MS.gene24475:CDS | 45.0% | |
| ATTGCAGCATGATGCAGTTG+CGG | + | chr1.1:4629994-4630013 | MS.gene24475:intron | 45.0% | |
| CAAGGCTAAACATCACTTCC+AGG | - | chr1.1:4631514-4631533 | None:intergenic | 45.0% | |
| CAAGGTTGAACCAAGCTTCA+TGG | - | chr1.1:4632618-4632637 | None:intergenic | 45.0% | |
| CAATAGCCCTGATCATCCTT+GGG | - | chr1.1:4629555-4629574 | None:intergenic | 45.0% | |
| CAGATCCTACCAGGTATCTT+TGG | + | chr1.1:4631116-4631135 | MS.gene24475:CDS | 45.0% | |
| CATGAAGCTTGGTTCAACCT+TGG | + | chr1.1:4632616-4632635 | MS.gene24475:CDS | 45.0% | |
| CATTCTTCACCAATACCGTC+CGG | - | chr1.1:4630711-4630730 | None:intergenic | 45.0% | |
| CCAAATCTATGGATCAAGGC+AGG | + | chr1.1:4630771-4630790 | MS.gene24475:CDS | 45.0% | |
| CCCAGAAGTTGGCATATTAC+AGG | + | chr1.1:4632267-4632286 | MS.gene24475:CDS | 45.0% | |
| CCTGCCTTGATCCATAGATT+TGG | - | chr1.1:4630774-4630793 | None:intergenic | 45.0% | |
| CTAAAGGAAGCTGCTCTAAC+TGG | + | chr1.1:4631479-4631498 | MS.gene24475:CDS | 45.0% | |
| CTGGAAGTGATGTTTAGCCT+TGG | + | chr1.1:4631512-4631531 | MS.gene24475:CDS | 45.0% | |
| GCAAAATTGCCTCAAGAAGC+AGG | - | chr1.1:4629657-4629676 | None:intergenic | 45.0% | |
| GGCATTAACGGAACGGAAAT+TGG | + | chr1.1:4632140-4632159 | MS.gene24475:intron | 45.0% | |
| GGGAGGCTTGAATATCAAAG+AGG | + | chr1.1:4629475-4629494 | MS.gene24475:CDS | 45.0% | |
| GTATCTTTGGTCGAGCTGAT+AGG | + | chr1.1:4631129-4631148 | MS.gene24475:CDS | 45.0% | |
| GTATTGCTTCAGCTCCTCTA+AGG | - | chr1.1:4629692-4629711 | None:intergenic | 45.0% | |
| GTGTTTCGGGAGCAATGTTA+TGG | - | chr1.1:4630026-4630045 | None:intergenic | 45.0% | |
| TATCTTCAAGGACCGGAGAT+TGG | + | chr1.1:4628926-4628945 | MS.gene24475:CDS | 45.0% | |
| TCATAGTATCTGCACAGCAG+AGG | + | chr1.1:4631642-4631661 | MS.gene24475:CDS | 45.0% | |
| TGCAGCTAGAACATCTGTAG+TGG | + | chr1.1:4631415-4631434 | MS.gene24475:CDS | 45.0% | |
| TGCTGCAATTGCAGTGTGAT+TGG | - | chr1.1:4629983-4630002 | None:intergenic | 45.0% | |
| TGGAGCTGCTTCCAAATCTA+TGG | + | chr1.1:4630760-4630779 | MS.gene24475:CDS | 45.0% | |
| TGTAGCTGCATCTTGTGACT+CGG | + | chr1.1:4630370-4630389 | MS.gene24475:intron | 45.0% | |
| TTAGCTACCACACTGCTCTA+TGG | + | chr1.1:4630885-4630904 | MS.gene24475:CDS | 45.0% | |
| TTTACAACCGCACCACATTG+CGG | + | chr1.1:4630316-4630335 | MS.gene24475:intron | 45.0% | |
| TTTGACCCCAAGGATGATCA+GGG | + | chr1.1:4629546-4629565 | MS.gene24475:CDS | 45.0% | |
| ! | AACCATGGAATTTGGAGCCA+AGG | + | chr1.1:4630838-4630857 | MS.gene24475:CDS | 45.0% |
| ! | CTTCAGCTCCTCTAAGGATT+TGG | - | chr1.1:4629686-4629705 | None:intergenic | 45.0% |
| !! | AAGCAGCGTTGAACCTTTTG+AGG | + | chr1.1:4631195-4631214 | MS.gene24475:CDS | 45.0% |
| !! | AGGAAGCTAGAGCATTGTTG+GGG | + | chr1.1:4629455-4629474 | MS.gene24475:intron | 45.0% |
| !!! | TTTTATTATTATGAATTTTA+AGG | + | chr1.1:4629435-4629454 | MS.gene24475:intron | 5.0% |
| AACACCACCATAGAGCAGTG+TGG | - | chr1.1:4630895-4630914 | None:intergenic | 50.0% | |
| AAGGAAACCTCGGTCCAAAG+CGG | + | chr1.1:4629591-4629610 | MS.gene24475:CDS | 50.0% | |
| AATGGAATGCCGGACGGTAT+TGG | + | chr1.1:4630699-4630718 | MS.gene24475:CDS | 50.0% | |
| ATACCGTCCGGCATTCCATT+AGG | - | chr1.1:4630699-4630718 | None:intergenic | 50.0% | |
| CAATACCCTGAAGCACGTGT+AGG | - | chr1.1:4629516-4629535 | None:intergenic | 50.0% | |
| CACAAAGGCCGCAAAGTAGT+GGG | - | chr1.1:4629944-4629963 | None:intergenic | 50.0% | |
| CACCACATTGCGGCATTATG+AGG | + | chr1.1:4630326-4630345 | MS.gene24475:intron | 50.0% | |
| CACCAGATTCCCTAGCAACA+AGG | + | chr1.1:4628884-4628903 | MS.gene24475:CDS | 50.0% | |
| CACTACTTTGCGGCCTTTGT+GGG | + | chr1.1:4629943-4629962 | MS.gene24475:intron | 50.0% | |
| CAGACCACATCACGTGTTTC+GGG | - | chr1.1:4630039-4630058 | None:intergenic | 50.0% | |
| CATAATGCCGCAATGTGGTG+CGG | - | chr1.1:4630326-4630345 | None:intergenic | 50.0% | |
| CTCCTTGGCTCCAAATTCCA+TGG | - | chr1.1:4630843-4630862 | None:intergenic | 50.0% | |
| CTCGACCAAAGATACCTGGT+AGG | - | chr1.1:4631124-4631143 | None:intergenic | 50.0% | |
| CTTCCTAATGGAATGCCGGA+CGG | + | chr1.1:4630693-4630712 | MS.gene24475:CDS | 50.0% | |
| CTTTGACCCCAAGGATGATC+AGG | + | chr1.1:4629545-4629564 | MS.gene24475:CDS | 50.0% | |
| GAAGCAGCTCCAATGCTTTG+TGG | - | chr1.1:4630752-4630771 | None:intergenic | 50.0% | |
| GAGGAGCTGAAGCAATACAC+TGG | + | chr1.1:4629694-4629713 | MS.gene24475:CDS | 50.0% | |
| GCAATAGCCCTGATCATCCT+TGG | - | chr1.1:4629556-4629575 | None:intergenic | 50.0% | |
| GCAGACCACATCACGTGTTT+CGG | - | chr1.1:4630040-4630059 | None:intergenic | 50.0% | |
| GCTCTTTGTTACAGTGCAGC+AGG | + | chr1.1:4631164-4631183 | MS.gene24475:CDS | 50.0% | |
| TCAGCTCGACCAAAGATACC+TGG | - | chr1.1:4631128-4631147 | None:intergenic | 50.0% | |
| TCCCTTGTTGCTAGGGAATC+TGG | - | chr1.1:4628889-4628908 | None:intergenic | 50.0% | |
| TCTTTGGTCGAGCTGATAGG+TGG | + | chr1.1:4631132-4631151 | MS.gene24475:CDS | 50.0% | |
| TGTGTAGAGCAGATCCTACC+AGG | + | chr1.1:4631107-4631126 | MS.gene24475:CDS | 50.0% | |
| ! | CATGGAATTTGGAGCCAAGG+AGG | + | chr1.1:4630841-4630860 | MS.gene24475:CDS | 50.0% |
| ! | GAATTTGGAGCCAAGGAGGT+TGG | + | chr1.1:4630845-4630864 | MS.gene24475:CDS | 50.0% |
| !! | AAGCTAGAGCATTGTTGGGG+AGG | + | chr1.1:4629458-4629477 | MS.gene24475:CDS | 50.0% |
| !! | GAGGTTGGCCTGTCTACAAA+AGG | + | chr1.1:4630860-4630879 | MS.gene24475:CDS | 50.0% |
| !! | GCTGTGCATCTTTTTGGCCT+TGG | + | chr1.1:4632348-4632367 | MS.gene24475:intron | 50.0% |
| AGGAAACCTCGGTCCAAAGC+GGG | + | chr1.1:4629592-4629611 | MS.gene24475:CDS | 55.0% | |
| AGGTAGCACAGTACCCGCTT+TGG | - | chr1.1:4629608-4629627 | None:intergenic | 55.0% | |
| CCACAAAGGCCGCAAAGTAG+TGG | - | chr1.1:4629945-4629964 | None:intergenic | 55.0% | |
| CCACTACTTTGCGGCCTTTG+TGG | + | chr1.1:4629942-4629961 | MS.gene24475:intron | 55.0% | |
| CCGTTGCACCCACTACTTTG+CGG | + | chr1.1:4629933-4629952 | MS.gene24475:intron | 55.0% | |
| GCTACCACACTGCTCTATGG+TGG | + | chr1.1:4630888-4630907 | MS.gene24475:CDS | 55.0% | |
| GCTAGGGAATCTGGTGACTG+TGG | - | chr1.1:4628880-4628899 | None:intergenic | 55.0% | |
| TGCTCCCGAAACACGTGATG+TGG | + | chr1.1:4630032-4630051 | MS.gene24475:intron | 55.0% | |
| TGTAGACAGGCCAACCTCCT+TGG | - | chr1.1:4630858-4630877 | None:intergenic | 55.0% | |
| TTCGGTGAGCCTGCTTCTTG+AGG | + | chr1.1:4629645-4629664 | MS.gene24475:CDS | 55.0% | |
| !! | CCGCAAAGTAGTGGGTGCAA+CGG | - | chr1.1:4629936-4629955 | None:intergenic | 55.0% |
| AGCTGCCCTACACGTGCTTC+AGG | + | chr1.1:4629507-4629526 | MS.gene24475:CDS | 60.0% | |
| CACTGCTTATCGGCGTGCTC+TGG | + | chr1.1:4630812-4630831 | MS.gene24475:CDS | 60.0% | |
| GCTGCCCTACACGTGCTTCA+GGG | + | chr1.1:4629508-4629527 | MS.gene24475:CDS | 60.0% | |
| GGCGTGCTCTGGTCAAACCA+TGG | + | chr1.1:4630823-4630842 | MS.gene24475:CDS | 60.0% | |
| ! | ACAGTACCCGCTTTGGACCG+AGG | - | chr1.1:4629601-4629620 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4628832 | 4632738 | 4628832 | ID=MS.gene24475 |
| chr1.1 | mRNA | 4628832 | 4632738 | 4628832 | ID=MS.gene24475.t1;Parent=MS.gene24475 |
| chr1.1 | exon | 4628832 | 4629023 | 4628832 | ID=MS.gene24475.t1.exon1;Parent=MS.gene24475.t1 |
| chr1.1 | CDS | 4628832 | 4629023 | 4628832 | ID=cds.MS.gene24475.t1;Parent=MS.gene24475.t1 |
| chr1.1 | exon | 4629457 | 4629715 | 4629457 | ID=MS.gene24475.t1.exon2;Parent=MS.gene24475.t1 |
| chr1.1 | CDS | 4629457 | 4629715 | 4629457 | ID=cds.MS.gene24475.t1;Parent=MS.gene24475.t1 |
| chr1.1 | exon | 4630646 | 4631889 | 4630646 | ID=MS.gene24475.t1.exon3;Parent=MS.gene24475.t1 |
| chr1.1 | CDS | 4630646 | 4631889 | 4630646 | ID=cds.MS.gene24475.t1;Parent=MS.gene24475.t1 |
| chr1.1 | exon | 4632141 | 4632288 | 4632141 | ID=MS.gene24475.t1.exon4;Parent=MS.gene24475.t1 |
| chr1.1 | CDS | 4632141 | 4632288 | 4632141 | ID=cds.MS.gene24475.t1;Parent=MS.gene24475.t1 |
| chr1.1 | exon | 4632428 | 4632738 | 4632428 | ID=MS.gene24475.t1.exon5;Parent=MS.gene24475.t1 |
| chr1.1 | CDS | 4632428 | 4632738 | 4632428 | ID=cds.MS.gene24475.t1;Parent=MS.gene24475.t1 |
| Gene Sequence |
| Protein sequence |
