Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66459.t1 | XP_003589067.2 | 97.1 | 717 | 21 | 0 | 1 | 717 | 1 | 717 | 0.00E+00 | 1359.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66459.t1 | Q9CB03 | 56.7 | 720 | 281 | 5 | 1 | 716 | 1 | 693 | 1.6e-225 | 783.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66459.t1 | G7ICB7 | 97.1 | 717 | 21 | 0 | 1 | 717 | 1 | 717 | 0.0e+00 | 1359.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049887 | MS.gene66459 | 0.817967 | 2.51E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene66459 | 0.811916 | 5.51E-51 | -1.69E-46 |
| MS.gene051693 | MS.gene66459 | 0.856899 | 2.35E-62 | -1.69E-46 |
| MS.gene052133 | MS.gene66459 | 0.830892 | 2.27E-55 | -1.69E-46 |
| MS.gene052732 | MS.gene66459 | 0.811337 | 7.36E-51 | -1.69E-46 |
| MS.gene053581 | MS.gene66459 | 0.828241 | 1.00E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene66459 | 0.805312 | 1.42E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene66459 | 0.814806 | 1.28E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene66459 | 0.811794 | 5.86E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene66459 | -0.812899 | 3.36E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene66459 | -0.81745 | 3.28E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene66459 | 0.805409 | 1.35E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene66459 | MS.gene23978 | PPI |
| MS.gene66459 | MS.gene89567 | PPI |
| MS.gene66459 | MS.gene018670 | PPI |
| MS.gene66459 | MS.gene23457 | PPI |
| MS.gene66459 | MS.gene020394 | PPI |
| MS.gene66459 | MS.gene23533 | PPI |
| MS.gene66459 | MS.gene038070 | PPI |
| MS.gene66459 | MS.gene036045 | PPI |
| MS.gene66459 | MS.gene96965 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66459.t1 | MTR_1g018040 | 97.071 | 717 | 21 | 0 | 1 | 717 | 1 | 717 | 0.0 | 1438 |
| MS.gene66459.t1 | MTR_1g069630 | 43.889 | 720 | 382 | 12 | 6 | 716 | 6 | 712 | 0.0 | 539 |
| MS.gene66459.t1 | MTR_7g097230 | 43.370 | 724 | 390 | 9 | 1 | 716 | 16 | 727 | 1.54e-179 | 530 |
| MS.gene66459.t1 | MTR_1g075480 | 42.739 | 723 | 390 | 10 | 3 | 716 | 24 | 731 | 8.08e-174 | 515 |
| MS.gene66459.t1 | MTR_1g075480 | 42.739 | 723 | 390 | 10 | 3 | 716 | 37 | 744 | 1.17e-173 | 515 |
| MS.gene66459.t1 | MTR_1g075480 | 42.562 | 726 | 390 | 11 | 3 | 716 | 37 | 747 | 1.77e-171 | 510 |
| MS.gene66459.t1 | MTR_8g071330 | 39.771 | 699 | 404 | 6 | 20 | 716 | 2 | 685 | 5.02e-167 | 496 |
| MS.gene66459.t1 | MTR_5g026810 | 40.896 | 714 | 394 | 9 | 6 | 716 | 4 | 692 | 2.25e-164 | 490 |
| MS.gene66459.t1 | MTR_1g075480 | 42.258 | 620 | 337 | 8 | 3 | 616 | 24 | 628 | 1.21e-144 | 437 |
| MS.gene66459.t1 | MTR_7g097230 | 44.262 | 549 | 293 | 7 | 1 | 541 | 16 | 559 | 1.27e-130 | 399 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66459.t1 | AT1G27460 | 56.806 | 720 | 280 | 5 | 1 | 716 | 1 | 693 | 0.0 | 821 |
| MS.gene66459.t1 | AT1G27460 | 56.667 | 720 | 277 | 5 | 1 | 716 | 1 | 689 | 0.0 | 819 |
| MS.gene66459.t1 | AT1G27460 | 58.727 | 550 | 211 | 3 | 1 | 546 | 1 | 538 | 0.0 | 656 |
| MS.gene66459.t1 | AT2G43040 | 41.761 | 704 | 378 | 9 | 24 | 716 | 18 | 700 | 4.50e-166 | 494 |
| MS.gene66459.t1 | AT2G43040 | 41.761 | 704 | 378 | 9 | 24 | 716 | 18 | 700 | 4.50e-166 | 494 |
| MS.gene66459.t1 | AT4G28600 | 40.192 | 729 | 408 | 13 | 1 | 716 | 25 | 738 | 6.52e-155 | 467 |
| MS.gene66459.t1 | AT4G28600 | 40.192 | 729 | 408 | 13 | 1 | 716 | 25 | 738 | 6.52e-155 | 467 |
| MS.gene66459.t1 | AT4G28600 | 39.808 | 731 | 413 | 13 | 1 | 716 | 25 | 743 | 2.66e-154 | 466 |
Find 143 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAGCATGATTTGGATAT+TGG | 0.161996 | 1.4:-4943972 | None:intergenic |
| GGCATTAACGGAACGGAAAT+TGG | 0.210728 | 1.4:+4944820 | MS.gene66459:intron |
| CTTCAGCTCCTCTAAGGATT+TGG | 0.281062 | 1.4:-4942363 | None:intergenic |
| ACCTGTAATATGCCAACTTC+TGG | 0.294083 | 1.4:-4944948 | None:intergenic |
| GCTTAAAGCCAAATCCTTAG+AGG | 0.300513 | 1.4:+4942355 | MS.gene66459:CDS |
| ATCTGCACAGCAGAGGTTTA+AGG | 0.303216 | 1.4:+4944329 | MS.gene66459:CDS |
| CCCAGAAGTTGGCATATTAC+AGG | 0.318735 | 1.4:+4944947 | MS.gene66459:CDS |
| AGCTGCCCTACACGTGCTTC+AGG | 0.320041 | 1.4:+4942187 | MS.gene66459:CDS |
| TCTGGTCAAACCATGGAATT+TGG | 0.324195 | 1.4:+4943510 | MS.gene66459:CDS |
| CTAAATGAAGCTGCTCTAAC+TGG | 0.324696 | 1.4:+4944159 | MS.gene66459:CDS |
| AGCAGTAATAAATGCCAAAA+AGG | 0.325256 | 1.4:+4944488 | MS.gene66459:CDS |
| AAGATGTTGTGTGCTTGTTC+TGG | 0.326511 | 1.4:+4941558 | None:intergenic |
| GGAATTAAGATCTGTATAAA+TGG | 0.329348 | 1.4:-4944870 | None:intergenic |
| AAATTCTTGGTGTTTGTTAC+GGG | 0.330909 | 1.4:+4944070 | MS.gene66459:CDS |
| TGGAGCTGCTTCCAAATCTA+TGG | 0.333720 | 1.4:+4943440 | MS.gene66459:CDS |
| GATTGGGATGCTGAAATAAT+TGG | 0.335302 | 1.4:+4943712 | MS.gene66459:CDS |
| TCTTTGAAATTGAACTCTTT+CGG | 0.336725 | 1.4:-4944121 | None:intergenic |
| ATCAGGAAAGATGGAACTTC+AGG | 0.337312 | 1.4:+4943684 | MS.gene66459:CDS |
| GTTCAAGGCCAACAAATTCT+TGG | 0.338655 | 1.4:+4944057 | MS.gene66459:CDS |
| ATGCCTTCATGAGCATGATT+TGG | 0.338766 | 1.4:-4943979 | None:intergenic |
| CTGCTAGTGGGTTATCTTCA+AGG | 0.339248 | 1.4:+4941643 | MS.gene66459:CDS |
| GAATGCATTGACATCAAATT+AGG | 0.345332 | 1.4:-4942305 | None:intergenic |
| ATGAGCATGATTTGGATATT+GGG | 0.348898 | 1.4:-4943971 | None:intergenic |
| CCTGCCTTGATCCATAGATT+TGG | 0.349443 | 1.4:-4943451 | None:intergenic |
| CAAGGTTGAACCAAGCTTCA+TGG | 0.349582 | 1.4:-4945295 | None:intergenic |
| GTATTGCTTCAGCTCCTCTA+AGG | 0.354042 | 1.4:-4942369 | None:intergenic |
| CAAATTCTTGGTGTTTGTTA+CGG | 0.366837 | 1.4:+4944069 | MS.gene66459:CDS |
| TTGATACTTGGAATATAATC+AGG | 0.370501 | 1.4:-4945179 | None:intergenic |
| CAGATCCTACCAGGTATCTT+TGG | 0.380041 | 1.4:+4943796 | MS.gene66459:CDS |
| TAGGTCTCAATAGCTTGCTT+TGG | 0.380503 | 1.4:-4944453 | None:intergenic |
| ATTGAATCAGCTCTTCCTAA+TGG | 0.382528 | 1.4:+4943361 | MS.gene66459:CDS |
| ATGAAGCTGTCACTGCTTAT+CGG | 0.382570 | 1.4:+4943482 | MS.gene66459:CDS |
| AATCACTCAAACTGTTGAAC+TGG | 0.382989 | 1.4:-4945398 | None:intergenic |
| CAATAGCCCTGATCATCCTT+GGG | 0.387578 | 1.4:-4942232 | None:intergenic |
| GACTGGGATGTTTGAATCAT+TGG | 0.390614 | 1.4:+4943759 | MS.gene66459:CDS |
| TGGTGAAGAATGTAAGTTGC+AGG | 0.392513 | 1.4:+4943399 | MS.gene66459:CDS |
| TACCACAAGCTTTCCTCAAA+AGG | 0.405664 | 1.4:-4943888 | None:intergenic |
| TAAGGAAGCTAGAGCATTGT+TGG | 0.406121 | 1.4:+4942133 | MS.gene66459:intron |
| TCCCTTGTTGCTAGGGAATC+CGG | 0.406701 | 1.4:-4941615 | None:intergenic |
| CTTTGACCCCAAGGATGATC+AGG | 0.411023 | 1.4:+4942225 | MS.gene66459:CDS |
| TATCTTCAAGGACTGGAGAC+TGG | 0.411122 | 1.4:+4941655 | MS.gene66459:CDS |
| ATGTTACTCATTGATGTTGT+TGG | 0.414395 | 1.4:-4943631 | None:intergenic |
| ATTAATTCTATCAGGAAAGA+TGG | 0.416682 | 1.4:+4943675 | MS.gene66459:CDS |
| GCAATAGCCCTGATCATCCT+TGG | 0.420247 | 1.4:-4942233 | None:intergenic |
| TTAGCTACCACACTGCTCTA+TGG | 0.426482 | 1.4:+4943565 | MS.gene66459:CDS |
| AACAAACACCAAGAATTTGT+TGG | 0.430010 | 1.4:-4944065 | None:intergenic |
| ATACCGTCCGGCATTCCATT+AGG | 0.430679 | 1.4:-4943376 | None:intergenic |
| AAGGAAGCTAGAGCATTGTT+GGG | 0.432906 | 1.4:+4942134 | MS.gene66459:intron |
| TTCGCAGTTGAATTGATACT+TGG | 0.437568 | 1.4:-4945191 | None:intergenic |
| TAATTTGATGTCAATGCATT+CGG | 0.439900 | 1.4:+4942307 | MS.gene66459:CDS |
| AATGGAATGCCGGACGGTAT+TGG | 0.439989 | 1.4:+4943379 | MS.gene66459:CDS |
| TTTAATGAATGCTTTGCGAT+TGG | 0.441748 | 1.4:+4945262 | MS.gene66459:CDS |
| CTCCTTGGCTCCAAATTCCA+TGG | 0.442330 | 1.4:-4943520 | None:intergenic |
| TGTAGACAGGCCAACCTCCT+TGG | 0.444748 | 1.4:-4943535 | None:intergenic |
| GAAGCAGCTCCAATGCTTTG+TGG | 0.446303 | 1.4:-4943429 | None:intergenic |
| CACTGCTTATCGGCGTGCTC+TGG | 0.446793 | 1.4:+4943492 | MS.gene66459:CDS |
| CCTTCTCATTTGCAAGTGAA+TGG | 0.448121 | 1.4:+4943607 | MS.gene66459:CDS |
| TGGAACTTCAGGAAATAGAT+TGG | 0.449360 | 1.4:+4943695 | MS.gene66459:CDS |
| AATGGAAGCATGGCAAGATA+TGG | 0.451345 | 1.4:+4944844 | MS.gene66459:CDS |
| CCTGTAATATGCCAACTTCT+GGG | 0.451772 | 1.4:-4944947 | None:intergenic |
| GCTCTTTGTTACAGTGCAGC+AGG | 0.459269 | 1.4:+4943844 | MS.gene66459:CDS |
| CATGAAGCTTGGTTCAACCT+TGG | 0.464895 | 1.4:+4945296 | MS.gene66459:CDS |
| GCAAAATTGCCTCAAGAAGC+AGG | 0.465479 | 1.4:-4942334 | None:intergenic |
| AACGGAACGGAAATTGGAAA+TGG | 0.469615 | 1.4:+4944826 | MS.gene66459:CDS |
| GCGAAGTTGTTGATTAAACT+TGG | 0.469791 | 1.4:+4945209 | MS.gene66459:CDS |
| TTTCCTTAGCTTGTTTCTCT+CGG | 0.476066 | 1.4:-4942255 | None:intergenic |
| GTATCTTTGGTCGAGCTGAT+AGG | 0.477271 | 1.4:+4943809 | MS.gene66459:CDS |
| TTTGCACCAAACAAATATGA+AGG | 0.477963 | 1.4:-4943940 | None:intergenic |
| AGAGAAATCCCTTGTTGCTA+GGG | 0.478676 | 1.4:-4941622 | None:intergenic |
| CAGAGAAATCCCTTGTTGCT+AGG | 0.478806 | 1.4:-4941623 | None:intergenic |
| AGGTAGCACAGTACCCGCTT+TGG | 0.485220 | 1.4:-4942285 | None:intergenic |
| AACCAAGCTTCATGGTTTGT+CGG | 0.489345 | 1.4:-4945287 | None:intergenic |
| TTCTACCTCATAGTTTAATG+AGG | 0.502115 | 1.4:-4941736 | None:intergenic |
| ATCTTCAAGGACTGGAGACT+GGG | 0.505395 | 1.4:+4941656 | MS.gene66459:CDS |
| GGAACTTCAGGAAATAGATT+GGG | 0.515192 | 1.4:+4943696 | MS.gene66459:CDS |
| AGCTTGGTTCAACCTTGGAT+TGG | 0.519014 | 1.4:+4945301 | MS.gene66459:CDS |
| GAGGTTGGCCTGTCTACAAA+AGG | 0.519839 | 1.4:+4943540 | MS.gene66459:CDS |
| TTCGGTGAGCCTGCTTCTTG+AGG | 0.520356 | 1.4:+4942325 | MS.gene66459:CDS |
| AGCTCTTCCTAATGGAATGC+CGG | 0.522614 | 1.4:+4943369 | MS.gene66459:CDS |
| AACAAATATGAAGGAAAATG+AGG | 0.527041 | 1.4:-4943931 | None:intergenic |
| AGCCGCCTCATTAAACTATG+AGG | 0.527983 | 1.4:+4941731 | MS.gene66459:CDS |
| CGAAGAGGCACCACAGTCAC+CGG | 0.527986 | 1.4:+4941596 | MS.gene66459:CDS |
| GCTGCCCTACACGTGCTTCA+GGG | 0.528614 | 1.4:+4942188 | MS.gene66459:CDS |
| GAGTTTGCTTTAGATGACAC+TGG | 0.530754 | 1.4:+4944369 | MS.gene66459:CDS |
| TTATCTATCAGAGGCTGCAA+AGG | 0.535927 | 1.4:+4943315 | MS.gene66459:intron |
| AACCGACAAACCATGAAGCT+TGG | 0.536001 | 1.4:+4945285 | MS.gene66459:CDS |
| GAATTTGGAGCCAAGGAGGT+TGG | 0.536228 | 1.4:+4943525 | MS.gene66459:CDS |
| AATACCCTGAAGCACGTGTA+GGG | 0.536742 | 1.4:-4942192 | None:intergenic |
| ACAAGGGATTTCTCTGCTAG+TGG | 0.537197 | 1.4:+4941630 | MS.gene66459:CDS |
| AACCATGGAATTTGGAGCCA+AGG | 0.539099 | 1.4:+4943518 | MS.gene66459:CDS |
| AGGAAACCTCGGTCCAAAGC+GGG | 0.539136 | 1.4:+4942272 | MS.gene66459:CDS |
| CAGCTTATCAAAACATAATG+AGG | 0.540674 | 1.4:+4944247 | MS.gene66459:CDS |
| GCTTCCAAATCTATGGATCA+AGG | 0.541459 | 1.4:+4943447 | MS.gene66459:CDS |
| GGAAATGTTCCACAAAGCAT+TGG | 0.544581 | 1.4:+4943420 | MS.gene66459:CDS |
| CACCGGATTCCCTAGCAACA+AGG | 0.550084 | 1.4:+4941613 | MS.gene66459:CDS |
| TGAAGCTCAATCATTATACA+AGG | 0.550824 | 1.4:+4945118 | MS.gene66459:CDS |
| TACTGCTAACAAGGTTCTGT+AGG | 0.552206 | 1.4:-4944472 | None:intergenic |
| TATCCAAATCATGCTCATGA+AGG | 0.553335 | 1.4:+4943976 | MS.gene66459:CDS |
| CCAAATCTATGGATCAAGGC+AGG | 0.554355 | 1.4:+4943451 | MS.gene66459:CDS |
| GGCATTTATTACTGCTAACA+AGG | 0.557549 | 1.4:-4944481 | None:intergenic |
| AGTGGGTTATCTTCAAGGAC+TGG | 0.563107 | 1.4:+4941648 | MS.gene66459:CDS |
| TCACTTGCAAATGAGAAGGT+AGG | 0.565027 | 1.4:-4943603 | None:intergenic |
| CATTCTTCACCAATACCGTC+CGG | 0.570943 | 1.4:-4943388 | None:intergenic |
| TACCTCATAGTTTAATGAGG+CGG | 0.572182 | 1.4:-4941733 | None:intergenic |
| AGTTTGCTTTAGATGACACT+GGG | 0.572182 | 1.4:+4944370 | MS.gene66459:CDS |
| TTGGAAGTTCTACAAGAGGT+TGG | 0.572389 | 1.4:+4944286 | MS.gene66459:CDS |
| CAAGGGATTTCTCTGCTAGT+GGG | 0.573642 | 1.4:+4941631 | MS.gene66459:CDS |
| TGTGTAGAGCAGATCCTACC+AGG | 0.574842 | 1.4:+4943787 | MS.gene66459:CDS |
| AATTCTTGGTGTTTGTTACG+GGG | 0.575668 | 1.4:+4944071 | MS.gene66459:CDS |
| GGGAAGCTTGAATATCAAAG+AGG | 0.591893 | 1.4:+4942155 | MS.gene66459:CDS |
| GTGGAAGTGATGTTTAGCCT+TGG | 0.592412 | 1.4:+4944192 | MS.gene66459:CDS |
| AGGTACTCAGACATGATGGT+TGG | 0.597729 | 1.4:+4944267 | MS.gene66459:CDS |
| ACAGTACCCGCTTTGGACCG+AGG | 0.599977 | 1.4:-4942278 | None:intergenic |
| CCATTCACTTGCAAATGAGA+AGG | 0.606529 | 1.4:-4943607 | None:intergenic |
| GACTTGAAAATGCAATTCAG+AGG | 0.608528 | 1.4:+4944214 | MS.gene66459:CDS |
| AATGAGGTACTCAGACATGA+TGG | 0.610964 | 1.4:+4944263 | MS.gene66459:CDS |
| CTTCCTAATGGAATGCCGGA+CGG | 0.613074 | 1.4:+4943373 | MS.gene66459:CDS |
| GGAAATTGGAAATGGAAGCA+TGG | 0.614368 | 1.4:+4944834 | MS.gene66459:CDS |
| AAAGGAGTGCAGAACAATTG+TGG | 0.615821 | 1.4:+4943333 | MS.gene66459:CDS |
| ATGGTTGGAAGTTCTACAAG+AGG | 0.617168 | 1.4:+4944282 | MS.gene66459:CDS |
| GGCGTGCTCTGGTCAAACCA+TGG | 0.623621 | 1.4:+4943503 | MS.gene66459:CDS |
| TCATAGTATCTGCACAGCAG+AGG | 0.625009 | 1.4:+4944322 | MS.gene66459:CDS |
| GCTACCACACTGCTCTATGG+TGG | 0.625696 | 1.4:+4943568 | MS.gene66459:CDS |
| TTGCCGAGAGAAACAAGCTA+AGG | 0.627270 | 1.4:+4942252 | MS.gene66459:CDS |
| ACCGGATTCCCTAGCAACAA+GGG | 0.628070 | 1.4:+4941614 | MS.gene66459:CDS |
| CAATACCCTGAAGCACGTGT+AGG | 0.628701 | 1.4:-4942193 | None:intergenic |
| ACATCAGTACTTTGACCCCA+AGG | 0.628904 | 1.4:+4942216 | MS.gene66459:CDS |
| TCAGCTCGACCAAAGATACC+TGG | 0.629775 | 1.4:-4943805 | None:intergenic |
| CATGGAATTTGGAGCCAAGG+AGG | 0.631501 | 1.4:+4943521 | MS.gene66459:CDS |
| GGAAGCTTGAATATCAAAGA+GGG | 0.633304 | 1.4:+4942156 | MS.gene66459:CDS |
| TCTTTGGTCGAGCTGATAGG+TGG | 0.642084 | 1.4:+4943812 | MS.gene66459:CDS |
| AGGAAGCTAGAGCATTGTTG+GGG | 0.646750 | 1.4:+4942135 | MS.gene66459:intron |
| TGCAGCTAGAACATCTGTAG+TGG | 0.650193 | 1.4:+4944095 | MS.gene66459:CDS |
| TTTGACCCCAAGGATGATCA+GGG | 0.657698 | 1.4:+4942226 | MS.gene66459:CDS |
| GAAACAAGCTAAGGAAACCT+CGG | 0.659340 | 1.4:+4942261 | MS.gene66459:CDS |
| GAGGAGCTGAAGCAATACAC+TGG | 0.667577 | 1.4:+4942374 | MS.gene66459:CDS |
| GCTAGGGAATCCGGTGACTG+TGG | 0.672695 | 1.4:-4941606 | None:intergenic |
| AATAGCCCTGATCATCCTTG+GGG | 0.690281 | 1.4:-4942231 | None:intergenic |
| AGAGCAACACAAATTCGAAG+AGG | 0.702161 | 1.4:+4941581 | MS.gene66459:CDS |
| AAGGAAACCTCGGTCCAAAG+CGG | 0.708975 | 1.4:+4942271 | MS.gene66459:CDS |
| CTCGACCAAAGATACCTGGT+AGG | 0.732247 | 1.4:-4943801 | None:intergenic |
| TCTAACTGGAAATAATGACG+TGG | 0.743819 | 1.4:+4944173 | MS.gene66459:CDS |
| AACACCACCATAGAGCAGTG+TGG | 0.767738 | 1.4:-4943572 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAGTGATTTGTTAATATA+TGG | - | chr1.4:4945059-4945078 | None:intergenic | 15.0% |
| !!! | GAAATTTTTGTTAAAAATTC+AGG | - | chr1.4:4944779-4944798 | None:intergenic | 15.0% |
| !! | AATATGCAATTACATGATTA+TGG | + | chr1.4:4945076-4945095 | MS.gene66459:intron | 20.0% |
| !! | ACAAGATAATGATTATATGA+AGG | - | chr1.4:4942408-4942427 | None:intergenic | 20.0% |
| !! | TATTGCATATAATAATGTAG+AGG | - | chr1.4:4944652-4944671 | None:intergenic | 20.0% |
| !!! | ATGTAGAGGATTATTTTTAA+TGG | - | chr1.4:4944638-4944657 | None:intergenic | 20.0% |
| !!! | CTTTTGTTATTAATTCTATC+AGG | + | chr1.4:4943667-4943686 | MS.gene66459:CDS | 20.0% |
| !!! | TTCTCTGATGTTTATTTTAT+CGG | + | chr1.4:4941964-4941983 | MS.gene66459:intron | 20.0% |
| ! | AAAATGTTGTTAGAGAGTAA+AGG | - | chr1.4:4941771-4941790 | None:intergenic | 25.0% |
| ! | AACAAATATGAAGGAAAATG+AGG | - | chr1.4:4943934-4943953 | None:intergenic | 25.0% |
| ! | AATATGAATTGATGCTAACA+TGG | - | chr1.4:4942539-4942558 | None:intergenic | 25.0% |
| ! | AGAACAAAACTTTCAGTAAT+TGG | - | chr1.4:4943168-4943187 | None:intergenic | 25.0% |
| ! | AGAGAAAAATTCTAGCAATT+GGG | - | chr1.4:4944927-4944946 | None:intergenic | 25.0% |
| ! | AGATAATGATTATATGAAGG+TGG | - | chr1.4:4942405-4942424 | None:intergenic | 25.0% |
| ! | ATAAATAAAGAAACGCGTTA+TGG | - | chr1.4:4942019-4942038 | None:intergenic | 25.0% |
| ! | ATTAATTCTATCAGGAAAGA+TGG | + | chr1.4:4943675-4943694 | MS.gene66459:CDS | 25.0% |
| ! | CAAAACAACAATGTACATTA+TGG | - | chr1.4:4942442-4942461 | None:intergenic | 25.0% |
| ! | CATAATGTAACAGCATTTAT+AGG | - | chr1.4:4943249-4943268 | None:intergenic | 25.0% |
| ! | GCAATAACTTTCATTTATTG+TGG | + | chr1.4:4944666-4944685 | MS.gene66459:intron | 25.0% |
| ! | GGAATTAAGATCTGTATAAA+TGG | - | chr1.4:4944873-4944892 | None:intergenic | 25.0% |
| ! | GTTAATATATGGTAATACCA+AGG | - | chr1.4:4945048-4945067 | None:intergenic | 25.0% |
| ! | TAATTTGATGTCAATGCATT+CGG | + | chr1.4:4942307-4942326 | MS.gene66459:CDS | 25.0% |
| ! | TGATCAAGCAAAAATATTCA+GGG | + | chr1.4:4944542-4944561 | MS.gene66459:CDS | 25.0% |
| ! | TTGATACTTGGAATATAATC+AGG | - | chr1.4:4945182-4945201 | None:intergenic | 25.0% |
| ! | TTGATCAAGCAAAAATATTC+AGG | + | chr1.4:4944541-4944560 | MS.gene66459:CDS | 25.0% |
| !! | CATTTTCCTTCATATTTGTT+TGG | + | chr1.4:4943934-4943953 | MS.gene66459:CDS | 25.0% |
| !!! | ATTGTTGTTTTGTTTGATTG+AGG | + | chr1.4:4942450-4942469 | MS.gene66459:intron | 25.0% |
| !!! | TCTTTGAAATTGAACTCTTT+CGG | - | chr1.4:4944124-4944143 | None:intergenic | 25.0% |
| !!! | TTGTTTCTGCTAATATTAGT+TGG | + | chr1.4:4942043-4942062 | MS.gene66459:intron | 25.0% |
| AAACATCAGAGAAGACATTA+TGG | - | chr1.4:4941957-4941976 | None:intergenic | 30.0% | |
| AACAAACACCAAGAATTTGT+TGG | - | chr1.4:4944068-4944087 | None:intergenic | 30.0% | |
| AATGTGTAGACATATTGATC+AGG | - | chr1.4:4943091-4943110 | None:intergenic | 30.0% | |
| ACATTGTTGCATTGTTTGAT+TGG | + | chr1.4:4942786-4942805 | MS.gene66459:intron | 30.0% | |
| ACTTTCATTTATTGTGGTAC+AGG | + | chr1.4:4944672-4944691 | MS.gene66459:intron | 30.0% | |
| AGCAGTAATAAATGCCAAAA+AGG | + | chr1.4:4944488-4944507 | MS.gene66459:CDS | 30.0% | |
| ATGTGTAGACATATTGATCA+GGG | - | chr1.4:4943090-4943109 | None:intergenic | 30.0% | |
| ATGTTACTCATTGATGTTGT+TGG | - | chr1.4:4943634-4943653 | None:intergenic | 30.0% | |
| ATTAAAAAGCTTCTTGCTAG+TGG | - | chr1.4:4945248-4945267 | None:intergenic | 30.0% | |
| CAATGCAACAATGTAGATTA+TGG | - | chr1.4:4942780-4942799 | None:intergenic | 30.0% | |
| CAGCTTATCAAAACATAATG+AGG | + | chr1.4:4944247-4944266 | MS.gene66459:CDS | 30.0% | |
| CATAATGTAGCAGCATTTAT+AGG | - | chr1.4:4942903-4942922 | None:intergenic | 30.0% | |
| CATAATGTAGTAGCATTTAC+AGG | - | chr1.4:4942570-4942589 | None:intergenic | 30.0% | |
| CATTGTTGCATTGTTTGATT+GGG | + | chr1.4:4942787-4942806 | MS.gene66459:intron | 30.0% | |
| CTGCAAAATATGAAAAGCAA+GGG | - | chr1.4:4944801-4944820 | None:intergenic | 30.0% | |
| GAGAGAAAAATTCTAGCAAT+TGG | - | chr1.4:4944928-4944947 | None:intergenic | 30.0% | |
| GCAATTCATATTGTGTTTGT+GGG | + | chr1.4:4941796-4941815 | MS.gene66459:intron | 30.0% | |
| TAAAACTCAAAACACTGCAA+CGG | - | chr1.4:4942970-4942989 | None:intergenic | 30.0% | |
| TCTCTCTATCACAATTCAAA+AGG | - | chr1.4:4941852-4941871 | None:intergenic | 30.0% | |
| TGAAGCTCAATCATTATACA+AGG | + | chr1.4:4945118-4945137 | MS.gene66459:CDS | 30.0% | |
| TGCAATTCATATTGTGTTTG+TGG | + | chr1.4:4941795-4941814 | MS.gene66459:intron | 30.0% | |
| TTCTACCTCATAGTTTAATG+AGG | - | chr1.4:4941739-4941758 | None:intergenic | 30.0% | |
| TTTAATGAATGCTTTGCGAT+TGG | + | chr1.4:4945262-4945281 | MS.gene66459:CDS | 30.0% | |
| TTTGCACCAAACAAATATGA+AGG | - | chr1.4:4943943-4943962 | None:intergenic | 30.0% | |
| ! | ATGAGCATGATTTGGATATT+GGG | - | chr1.4:4943974-4943993 | None:intergenic | 30.0% |
| ! | GAATGCATTGACATCAAATT+AGG | - | chr1.4:4942308-4942327 | None:intergenic | 30.0% |
| ! | TCATATTTTGCAGGCATTAA+CGG | + | chr1.4:4944808-4944827 | MS.gene66459:intron | 30.0% |
| !! | AAAATGCTCATTTTGATGCT+TGG | - | chr1.4:4944034-4944053 | None:intergenic | 30.0% |
| !! | AAATTCTTGGTGTTTGTTAC+GGG | + | chr1.4:4944070-4944089 | MS.gene66459:CDS | 30.0% |
| !! | CAAATTCTTGGTGTTTGTTA+CGG | + | chr1.4:4944069-4944088 | MS.gene66459:CDS | 30.0% |
| !!! | AATGAGCATTTTTTGGTTCA+AGG | + | chr1.4:4944042-4944061 | MS.gene66459:CDS | 30.0% |
| !!! | GCATCAAAATGAGCATTTTT+TGG | + | chr1.4:4944035-4944054 | MS.gene66459:CDS | 30.0% |
| !!! | TCTGATGTTTATTTTATCGG+TGG | + | chr1.4:4941967-4941986 | MS.gene66459:intron | 30.0% |
| AACACACTTTGATCCTAACA+TGG | - | chr1.4:4943218-4943237 | None:intergenic | 35.0% | |
| AAGTTGGCATATTACAGGTA+TGG | + | chr1.4:4944952-4944971 | MS.gene66459:intron | 35.0% | |
| ACATGATTATGGCAATGACA+GGG | + | chr1.4:4945087-4945106 | MS.gene66459:intron | 35.0% | |
| AGCAAAAATATTCAGGGATG+AGG | + | chr1.4:4944548-4944567 | MS.gene66459:CDS | 35.0% | |
| ATCAAACAATACCACAACGA+AGG | - | chr1.4:4943122-4943141 | None:intergenic | 35.0% | |
| ATTCATATTGTGTTTGTGGG+TGG | + | chr1.4:4941799-4941818 | MS.gene66459:intron | 35.0% | |
| ATTGAATCAGCTCTTCCTAA+TGG | + | chr1.4:4943361-4943380 | MS.gene66459:CDS | 35.0% | |
| CCTGCAAAATATGAAAAGCA+AGG | - | chr1.4:4944802-4944821 | None:intergenic | 35.0% | |
| CTTGAACAAATCTCCATGTT+AGG | + | chr1.4:4943202-4943221 | MS.gene66459:intron | 35.0% | |
| GAATTGTGATAGAGAGAAGA+TGG | + | chr1.4:4941855-4941874 | MS.gene66459:intron | 35.0% | |
| GACTTGAAAATGCAATTCAG+AGG | + | chr1.4:4944214-4944233 | MS.gene66459:CDS | 35.0% | |
| GATTGGGATGCTGAAATAAT+TGG | + | chr1.4:4943712-4943731 | MS.gene66459:CDS | 35.0% | |
| GGAACTTCAGGAAATAGATT+GGG | + | chr1.4:4943696-4943715 | MS.gene66459:CDS | 35.0% | |
| GGAAGCTTGAATATCAAAGA+GGG | + | chr1.4:4942156-4942175 | MS.gene66459:CDS | 35.0% | |
| GGCATTTATTACTGCTAACA+AGG | - | chr1.4:4944484-4944503 | None:intergenic | 35.0% | |
| GTGTAAAAGAGATGATGATC+AGG | - | chr1.4:4942752-4942771 | None:intergenic | 35.0% | |
| TACATGATTATGGCAATGAC+AGG | + | chr1.4:4945086-4945105 | MS.gene66459:intron | 35.0% | |
| TACCTCATAGTTTAATGAGG+CGG | - | chr1.4:4941736-4941755 | None:intergenic | 35.0% | |
| TATCCAAATCATGCTCATGA+AGG | + | chr1.4:4943976-4943995 | MS.gene66459:CDS | 35.0% | |
| TCTAACTGGAAATAATGACG+TGG | + | chr1.4:4944173-4944192 | MS.gene66459:CDS | 35.0% | |
| TGGAACTTCAGGAAATAGAT+TGG | + | chr1.4:4943695-4943714 | MS.gene66459:CDS | 35.0% | |
| TTCGCAGTTGAATTGATACT+TGG | - | chr1.4:4945194-4945213 | None:intergenic | 35.0% | |
| TTGATCAGGGTTTCAAATTG+CGG | - | chr1.4:4943077-4943096 | None:intergenic | 35.0% | |
| ! | AACTAGAGAGAATGCGTTTT+TGG | + | chr1.4:4941883-4941902 | MS.gene66459:intron | 35.0% |
| ! | AATTTTTCTCTCCCAGAAGT+TGG | + | chr1.4:4944936-4944955 | MS.gene66459:CDS | 35.0% |
| ! | ACAAGCTTTTGCATCAAGAA+AGG | - | chr1.4:4944894-4944913 | None:intergenic | 35.0% |
| ! | ACATTTTCGCTTTCAATGAC+TGG | + | chr1.4:4943742-4943761 | MS.gene66459:CDS | 35.0% |
| ! | AGCTAAATCCTTTTGTAGAC+AGG | - | chr1.4:4943551-4943570 | None:intergenic | 35.0% |
| ! | AGTTTGCTTTAGATGACACT+GGG | + | chr1.4:4944370-4944389 | MS.gene66459:CDS | 35.0% |
| ! | ATTTTCCATAACCTTCGTTG+TGG | + | chr1.4:4943108-4943127 | MS.gene66459:intron | 35.0% |
| ! | CATGAGCATGATTTGGATAT+TGG | - | chr1.4:4943975-4943994 | None:intergenic | 35.0% |
| ! | CATTTTCGCTTTCAATGACT+GGG | + | chr1.4:4943743-4943762 | MS.gene66459:CDS | 35.0% |
| ! | GCGAAGTTGTTGATTAAACT+TGG | + | chr1.4:4945209-4945228 | MS.gene66459:CDS | 35.0% |
| ! | TTGAAGCGAAATCTCCTTTT+TGG | - | chr1.4:4944505-4944524 | None:intergenic | 35.0% |
| !! | AATTCTTGGTGTTTGTTACG+GGG | + | chr1.4:4944071-4944090 | MS.gene66459:CDS | 35.0% |
| !! | CCTTGCTTTTCATATTTTGC+AGG | + | chr1.4:4944799-4944818 | MS.gene66459:intron | 35.0% |
| !! | CCTTGGATTGGTTTCAAAAA+TGG | + | chr1.4:4945313-4945332 | MS.gene66459:CDS | 35.0% |
| !! | GGATTGGTTTCAAAAATGGA+GGG | + | chr1.4:4945317-4945336 | MS.gene66459:CDS | 35.0% |
| !! | TGGATTGGTTTCAAAAATGG+AGG | + | chr1.4:4945316-4945335 | MS.gene66459:CDS | 35.0% |
| !! | TTTCCTTAGCTTGTTTCTCT+CGG | - | chr1.4:4942258-4942277 | None:intergenic | 35.0% |
| !!! | CCATTTTTGAAACCAATCCA+AGG | - | chr1.4:4945316-4945335 | None:intergenic | 35.0% |
| !!! | GAATTGCATTTTCAAGTCCA+AGG | - | chr1.4:4944212-4944231 | None:intergenic | 35.0% |
| AACGGAACGGAAATTGGAAA+TGG | + | chr1.4:4944826-4944845 | MS.gene66459:CDS | 40.0% | |
| AAGATGACCAAACAGTGTTC+AGG | - | chr1.4:4944980-4944999 | None:intergenic | 40.0% | |
| AAGATGCAGCTACAATGTTG+CGG | - | chr1.4:4943044-4943063 | None:intergenic | 40.0% | |
| AATCACAGTAGAACCCACAA+AGG | - | chr1.4:4942639-4942658 | None:intergenic | 40.0% | |
| ACCTGTAATATGCCAACTTC+TGG | - | chr1.4:4944951-4944970 | None:intergenic | 40.0% | |
| AGAAACGCGTTATGGTATGT+TGG | - | chr1.4:4942011-4942030 | None:intergenic | 40.0% | |
| AGAGAAATCCCTTGTTGCTA+GGG | - | chr1.4:4941625-4941644 | None:intergenic | 40.0% | |
| AGAGCAACACAAATTCGAAG+AGG | + | chr1.4:4941581-4941600 | MS.gene66459:CDS | 40.0% | |
| AGATGCACAGCTGAAACATT+CGG | - | chr1.4:4945019-4945038 | None:intergenic | 40.0% | |
| ATCAGGAAAGATGGAACTTC+AGG | + | chr1.4:4943684-4943703 | MS.gene66459:CDS | 40.0% | |
| ATGAAGCTGTCACTGCTTAT+CGG | + | chr1.4:4943482-4943501 | MS.gene66459:CDS | 40.0% | |
| ATGCCTTCATGAGCATGATT+TGG | - | chr1.4:4943982-4944001 | None:intergenic | 40.0% | |
| ATGGTTGGAAGTTCTACAAG+AGG | + | chr1.4:4944282-4944301 | MS.gene66459:CDS | 40.0% | |
| CAATACCACAACGAAGGTTA+TGG | - | chr1.4:4943116-4943135 | None:intergenic | 40.0% | |
| CATGGAGATTGTTCAAGACT+TGG | - | chr1.4:4942521-4942540 | None:intergenic | 40.0% | |
| CCATTCACTTGCAAATGAGA+AGG | - | chr1.4:4943610-4943629 | None:intergenic | 40.0% | |
| CCTGTAATATGCCAACTTCT+GGG | - | chr1.4:4944950-4944969 | None:intergenic | 40.0% | |
| CCTTCTCATTTGCAAGTGAA+TGG | + | chr1.4:4943607-4943626 | MS.gene66459:CDS | 40.0% | |
| CTAAATGAAGCTGCTCTAAC+TGG | + | chr1.4:4944159-4944178 | MS.gene66459:CDS | 40.0% | |
| GAAACAAGCTAAGGAAACCT+CGG | + | chr1.4:4942261-4942280 | MS.gene66459:CDS | 40.0% | |
| GACTGGGATGTTTGAATCAT+TGG | + | chr1.4:4943759-4943778 | MS.gene66459:CDS | 40.0% | |
| GCTTAAAGCCAAATCCTTAG+AGG | + | chr1.4:4942355-4942374 | MS.gene66459:CDS | 40.0% | |
| GCTTCCAAATCTATGGATCA+AGG | + | chr1.4:4943447-4943466 | MS.gene66459:CDS | 40.0% | |
| GGAAATGTTCCACAAAGCAT+TGG | + | chr1.4:4943420-4943439 | MS.gene66459:CDS | 40.0% | |
| GGAAATTGGAAATGGAAGCA+TGG | + | chr1.4:4944834-4944853 | MS.gene66459:CDS | 40.0% | |
| GGGAAGCTTGAATATCAAAG+AGG | + | chr1.4:4942155-4942174 | MS.gene66459:CDS | 40.0% | |
| GGTCATTGCAAACTACTTTG+CGG | + | chr1.4:4942944-4942963 | MS.gene66459:intron | 40.0% | |
| GTTCAAGGCCAACAAATTCT+TGG | + | chr1.4:4944057-4944076 | MS.gene66459:CDS | 40.0% | |
| TACCACAAGCTTTCCTCAAA+AGG | - | chr1.4:4943891-4943910 | None:intergenic | 40.0% | |
| TACTGCTAACAAGGTTCTGT+AGG | - | chr1.4:4944475-4944494 | None:intergenic | 40.0% | |
| TATGGAACCTGAACACTGTT+TGG | + | chr1.4:4944970-4944989 | MS.gene66459:intron | 40.0% | |
| TCACTTGCAAATGAGAAGGT+AGG | - | chr1.4:4943606-4943625 | None:intergenic | 40.0% | |
| TCAGGAGCTGAATCTAAACT+AGG | - | chr1.4:4944761-4944780 | None:intergenic | 40.0% | |
| TCTGGTCAAACCATGGAATT+TGG | + | chr1.4:4943510-4943529 | MS.gene66459:CDS | 40.0% | |
| TGGGTGGCTGAAATTACATT+TGG | + | chr1.4:4941815-4941834 | MS.gene66459:intron | 40.0% | |
| TGGTGAAGAATGTAAGTTGC+AGG | + | chr1.4:4943399-4943418 | MS.gene66459:CDS | 40.0% | |
| TTATCTATCAGAGGCTGCAA+AGG | + | chr1.4:4943315-4943334 | MS.gene66459:intron | 40.0% | |
| TTGGAAGTTCTACAAGAGGT+TGG | + | chr1.4:4944286-4944305 | MS.gene66459:CDS | 40.0% | |
| ! | AAAGGAGTGCAGAACAATTG+TGG | + | chr1.4:4943333-4943352 | MS.gene66459:CDS | 40.0% |
| ! | AACCAAGCTTCATGGTTTGT+CGG | - | chr1.4:4945290-4945309 | None:intergenic | 40.0% |
| ! | AATGAGGTACTCAGACATGA+TGG | + | chr1.4:4944263-4944282 | MS.gene66459:CDS | 40.0% |
| ! | AATGGAAGCATGGCAAGATA+TGG | + | chr1.4:4944844-4944863 | MS.gene66459:CDS | 40.0% |
| ! | GAGTTTGCTTTAGATGACAC+TGG | + | chr1.4:4944369-4944388 | MS.gene66459:CDS | 40.0% |
| ! | GCTGCTTTCTTATCTATCAG+AGG | + | chr1.4:4943306-4943325 | MS.gene66459:intron | 40.0% |
| ! | GTTTCAGCTGTGCATCTTTT+TGG | + | chr1.4:4945022-4945041 | MS.gene66459:intron | 40.0% |
| ! | TTTTGCAGGCATTAACGGAA+CGG | + | chr1.4:4944813-4944832 | MS.gene66459:intron | 40.0% |
| !! | AACCTTTTGAGGAAAGCTTG+TGG | + | chr1.4:4943886-4943905 | MS.gene66459:CDS | 40.0% |
| !! | AAGGAAGCTAGAGCATTGTT+GGG | + | chr1.4:4942134-4942153 | MS.gene66459:intron | 40.0% |
| !! | TAAGGAAGCTAGAGCATTGT+TGG | + | chr1.4:4942133-4942152 | MS.gene66459:intron | 40.0% |
| !! | TAGGTCTCAATAGCTTGCTT+TGG | - | chr1.4:4944456-4944475 | None:intergenic | 40.0% |
| !! | TGTGTTTTTGCTGTGTGATG+TGG | + | chr1.4:4942590-4942609 | MS.gene66459:intron | 40.0% |
| !!! | GTGTGTGTTCGTTACTTTTG+AGG | + | chr1.4:4944570-4944589 | MS.gene66459:intron | 40.0% |
| AACCGACAAACCATGAAGCT+TGG | + | chr1.4:4945285-4945304 | MS.gene66459:CDS | 45.0% | |
| AACCTCATAATGCCGCAATG+TGG | - | chr1.4:4943011-4943030 | None:intergenic | 45.0% | |
| AATACCCTGAAGCACGTGTA+GGG | - | chr1.4:4942195-4942214 | None:intergenic | 45.0% | |
| AATAGCCCTGATCATCCTTG+GGG | - | chr1.4:4942234-4942253 | None:intergenic | 45.0% | |
| ACAAGGGATTTCTCTGCTAG+TGG | + | chr1.4:4941630-4941649 | MS.gene66459:CDS | 45.0% | |
| ACATCAGTACTTTGACCCCA+AGG | + | chr1.4:4942216-4942235 | MS.gene66459:CDS | 45.0% | |
| AGCCGCCTCATTAAACTATG+AGG | + | chr1.4:4941731-4941750 | MS.gene66459:CDS | 45.0% | |
| AGCTCTTCCTAATGGAATGC+CGG | + | chr1.4:4943369-4943388 | MS.gene66459:CDS | 45.0% | |
| AGCTTGGTTCAACCTTGGAT+TGG | + | chr1.4:4945301-4945320 | MS.gene66459:CDS | 45.0% | |
| AGGTACTCAGACATGATGGT+TGG | + | chr1.4:4944267-4944286 | MS.gene66459:CDS | 45.0% | |
| ATCTGCACAGCAGAGGTTTA+AGG | + | chr1.4:4944329-4944348 | MS.gene66459:CDS | 45.0% | |
| ATCTTCAAGGACTGGAGACT+GGG | + | chr1.4:4941656-4941675 | MS.gene66459:CDS | 45.0% | |
| ATTGCAGCATGATGCAGTTG+CGG | + | chr1.4:4942674-4942693 | MS.gene66459:intron | 45.0% | |
| CAAGGGATTTCTCTGCTAGT+GGG | + | chr1.4:4941631-4941650 | MS.gene66459:CDS | 45.0% | |
| CAAGGTTGAACCAAGCTTCA+TGG | - | chr1.4:4945298-4945317 | None:intergenic | 45.0% | |
| CAATAGCCCTGATCATCCTT+GGG | - | chr1.4:4942235-4942254 | None:intergenic | 45.0% | |
| CAGAGAAATCCCTTGTTGCT+AGG | - | chr1.4:4941626-4941645 | None:intergenic | 45.0% | |
| CAGATCCTACCAGGTATCTT+TGG | + | chr1.4:4943796-4943815 | MS.gene66459:CDS | 45.0% | |
| CATGAAGCTTGGTTCAACCT+TGG | + | chr1.4:4945296-4945315 | MS.gene66459:CDS | 45.0% | |
| CATTCTTCACCAATACCGTC+CGG | - | chr1.4:4943391-4943410 | None:intergenic | 45.0% | |
| CCAAATCTATGGATCAAGGC+AGG | + | chr1.4:4943451-4943470 | MS.gene66459:CDS | 45.0% | |
| CCCAGAAGTTGGCATATTAC+AGG | + | chr1.4:4944947-4944966 | MS.gene66459:CDS | 45.0% | |
| CCTGCCTTGATCCATAGATT+TGG | - | chr1.4:4943454-4943473 | None:intergenic | 45.0% | |
| GCAAAATTGCCTCAAGAAGC+AGG | - | chr1.4:4942337-4942356 | None:intergenic | 45.0% | |
| GGCATTAACGGAACGGAAAT+TGG | + | chr1.4:4944820-4944839 | MS.gene66459:intron | 45.0% | |
| GTATCTTTGGTCGAGCTGAT+AGG | + | chr1.4:4943809-4943828 | MS.gene66459:CDS | 45.0% | |
| GTATTGCTTCAGCTCCTCTA+AGG | - | chr1.4:4942372-4942391 | None:intergenic | 45.0% | |
| GTGGAAGTGATGTTTAGCCT+TGG | + | chr1.4:4944192-4944211 | MS.gene66459:CDS | 45.0% | |
| GTGTTTCGGGAGCAATGTTA+TGG | - | chr1.4:4942706-4942725 | None:intergenic | 45.0% | |
| TATCTTCAAGGACTGGAGAC+TGG | + | chr1.4:4941655-4941674 | MS.gene66459:CDS | 45.0% | |
| TCATAGTATCTGCACAGCAG+AGG | + | chr1.4:4944322-4944341 | MS.gene66459:CDS | 45.0% | |
| TGCAGCTAGAACATCTGTAG+TGG | + | chr1.4:4944095-4944114 | MS.gene66459:CDS | 45.0% | |
| TGCTGCAATTGCAGTGTGAT+TGG | - | chr1.4:4942663-4942682 | None:intergenic | 45.0% | |
| TGGAGCTGCTTCCAAATCTA+TGG | + | chr1.4:4943440-4943459 | MS.gene66459:CDS | 45.0% | |
| TGTAGCTGCATCTTGTGACT+CGG | + | chr1.4:4943050-4943069 | MS.gene66459:intron | 45.0% | |
| TTAGCTACCACACTGCTCTA+TGG | + | chr1.4:4943565-4943584 | MS.gene66459:CDS | 45.0% | |
| TTGCCGAGAGAAACAAGCTA+AGG | + | chr1.4:4942252-4942271 | MS.gene66459:CDS | 45.0% | |
| TTTACAACCGCACCACATTG+CGG | + | chr1.4:4942996-4943015 | MS.gene66459:intron | 45.0% | |
| TTTGACCCCAAGGATGATCA+GGG | + | chr1.4:4942226-4942245 | MS.gene66459:CDS | 45.0% | |
| ! | AACCATGGAATTTGGAGCCA+AGG | + | chr1.4:4943518-4943537 | MS.gene66459:CDS | 45.0% |
| ! | CGTGATCTTGCTGTGTGATA+CGG | + | chr1.4:4942923-4942942 | MS.gene66459:intron | 45.0% |
| ! | CTTCAGCTCCTCTAAGGATT+TGG | - | chr1.4:4942366-4942385 | None:intergenic | 45.0% |
| !! | AAGCAGCGTTGAACCTTTTG+AGG | + | chr1.4:4943875-4943894 | MS.gene66459:CDS | 45.0% |
| !! | AGGAAGCTAGAGCATTGTTG+GGG | + | chr1.4:4942135-4942154 | MS.gene66459:intron | 45.0% |
| !! | AGTGGGTTATCTTCAAGGAC+TGG | + | chr1.4:4941648-4941667 | MS.gene66459:CDS | 45.0% |
| !! | CTGCTAGTGGGTTATCTTCA+AGG | + | chr1.4:4941643-4941662 | MS.gene66459:CDS | 45.0% |
| !!! | TATTATTATTATGAATTTTA+AGG | + | chr1.4:4942115-4942134 | MS.gene66459:intron | 5.0% |
| AACACCACCATAGAGCAGTG+TGG | - | chr1.4:4943575-4943594 | None:intergenic | 50.0% | |
| AAGGAAACCTCGGTCCAAAG+CGG | + | chr1.4:4942271-4942290 | MS.gene66459:CDS | 50.0% | |
| AATGGAATGCCGGACGGTAT+TGG | + | chr1.4:4943379-4943398 | MS.gene66459:CDS | 50.0% | |
| ACCGGATTCCCTAGCAACAA+GGG | + | chr1.4:4941614-4941633 | MS.gene66459:CDS | 50.0% | |
| ATACCGTCCGGCATTCCATT+AGG | - | chr1.4:4943379-4943398 | None:intergenic | 50.0% | |
| CAATACCCTGAAGCACGTGT+AGG | - | chr1.4:4942196-4942215 | None:intergenic | 50.0% | |
| CACAAAGGCCGCAAAGTAGT+GGG | - | chr1.4:4942624-4942643 | None:intergenic | 50.0% | |
| CACCACATTGCGGCATTATG+AGG | + | chr1.4:4943006-4943025 | MS.gene66459:intron | 50.0% | |
| CACTACTTTGCGGCCTTTGT+GGG | + | chr1.4:4942623-4942642 | MS.gene66459:intron | 50.0% | |
| CAGACCACATCACGTGTTTC+GGG | - | chr1.4:4942719-4942738 | None:intergenic | 50.0% | |
| CATAATGCCGCAATGTGGTG+CGG | - | chr1.4:4943006-4943025 | None:intergenic | 50.0% | |
| CTCCTTGGCTCCAAATTCCA+TGG | - | chr1.4:4943523-4943542 | None:intergenic | 50.0% | |
| CTCGACCAAAGATACCTGGT+AGG | - | chr1.4:4943804-4943823 | None:intergenic | 50.0% | |
| CTTCCTAATGGAATGCCGGA+CGG | + | chr1.4:4943373-4943392 | MS.gene66459:CDS | 50.0% | |
| CTTTGACCCCAAGGATGATC+AGG | + | chr1.4:4942225-4942244 | MS.gene66459:CDS | 50.0% | |
| GAAGCAGCTCCAATGCTTTG+TGG | - | chr1.4:4943432-4943451 | None:intergenic | 50.0% | |
| GAGGAGCTGAAGCAATACAC+TGG | + | chr1.4:4942374-4942393 | MS.gene66459:CDS | 50.0% | |
| GCAATAGCCCTGATCATCCT+TGG | - | chr1.4:4942236-4942255 | None:intergenic | 50.0% | |
| GCAGACCACATCACGTGTTT+CGG | - | chr1.4:4942720-4942739 | None:intergenic | 50.0% | |
| GCTCTTTGTTACAGTGCAGC+AGG | + | chr1.4:4943844-4943863 | MS.gene66459:CDS | 50.0% | |
| TCAGCTCGACCAAAGATACC+TGG | - | chr1.4:4943808-4943827 | None:intergenic | 50.0% | |
| TCCCTTGTTGCTAGGGAATC+CGG | - | chr1.4:4941618-4941637 | None:intergenic | 50.0% | |
| TCTTTGGTCGAGCTGATAGG+TGG | + | chr1.4:4943812-4943831 | MS.gene66459:CDS | 50.0% | |
| TGTGTAGAGCAGATCCTACC+AGG | + | chr1.4:4943787-4943806 | MS.gene66459:CDS | 50.0% | |
| ! | CATGGAATTTGGAGCCAAGG+AGG | + | chr1.4:4943521-4943540 | MS.gene66459:CDS | 50.0% |
| ! | GAATTTGGAGCCAAGGAGGT+TGG | + | chr1.4:4943525-4943544 | MS.gene66459:CDS | 50.0% |
| !! | GAGGTTGGCCTGTCTACAAA+AGG | + | chr1.4:4943540-4943559 | MS.gene66459:CDS | 50.0% |
| !! | GCTGTGCATCTTTTTGGCCT+TGG | + | chr1.4:4945028-4945047 | MS.gene66459:intron | 50.0% |
| AGGAAACCTCGGTCCAAAGC+GGG | + | chr1.4:4942272-4942291 | MS.gene66459:CDS | 55.0% | |
| AGGTAGCACAGTACCCGCTT+TGG | - | chr1.4:4942288-4942307 | None:intergenic | 55.0% | |
| CACCGGATTCCCTAGCAACA+AGG | + | chr1.4:4941613-4941632 | MS.gene66459:CDS | 55.0% | |
| CCACAAAGGCCGCAAAGTAG+TGG | - | chr1.4:4942625-4942644 | None:intergenic | 55.0% | |
| CCACTACTTTGCGGCCTTTG+TGG | + | chr1.4:4942622-4942641 | MS.gene66459:intron | 55.0% | |
| CCGTTGCACCCACTACTTTG+CGG | + | chr1.4:4942613-4942632 | MS.gene66459:intron | 55.0% | |
| GCTACCACACTGCTCTATGG+TGG | + | chr1.4:4943568-4943587 | MS.gene66459:CDS | 55.0% | |
| TGCTCCCGAAACACGTGATG+TGG | + | chr1.4:4942712-4942731 | MS.gene66459:intron | 55.0% | |
| TGTAGACAGGCCAACCTCCT+TGG | - | chr1.4:4943538-4943557 | None:intergenic | 55.0% | |
| TTCGGTGAGCCTGCTTCTTG+AGG | + | chr1.4:4942325-4942344 | MS.gene66459:CDS | 55.0% | |
| !! | CCGCAAAGTAGTGGGTGCAA+CGG | - | chr1.4:4942616-4942635 | None:intergenic | 55.0% |
| AGCTGCCCTACACGTGCTTC+AGG | + | chr1.4:4942187-4942206 | MS.gene66459:CDS | 60.0% | |
| CACTGCTTATCGGCGTGCTC+TGG | + | chr1.4:4943492-4943511 | MS.gene66459:CDS | 60.0% | |
| GCTAGGGAATCCGGTGACTG+TGG | - | chr1.4:4941609-4941628 | None:intergenic | 60.0% | |
| GCTGCCCTACACGTGCTTCA+GGG | + | chr1.4:4942188-4942207 | MS.gene66459:CDS | 60.0% | |
| GGCGTGCTCTGGTCAAACCA+TGG | + | chr1.4:4943503-4943522 | MS.gene66459:CDS | 60.0% | |
| ! | ACAGTACCCGCTTTGGACCG+AGG | - | chr1.4:4942281-4942300 | None:intergenic | 60.0% |
| !! | CGAAGAGGCACCACAGTCAC+CGG | + | chr1.4:4941596-4941615 | MS.gene66459:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4941561 | 4945418 | 4941561 | ID=MS.gene66459 |
| chr1.4 | mRNA | 4941561 | 4945418 | 4941561 | ID=MS.gene66459.t1;Parent=MS.gene66459 |
| chr1.4 | exon | 4941561 | 4941752 | 4941561 | ID=MS.gene66459.t1.exon1;Parent=MS.gene66459.t1 |
| chr1.4 | CDS | 4941561 | 4941752 | 4941561 | ID=cds.MS.gene66459.t1;Parent=MS.gene66459.t1 |
| chr1.4 | exon | 4942137 | 4942395 | 4942137 | ID=MS.gene66459.t1.exon2;Parent=MS.gene66459.t1 |
| chr1.4 | CDS | 4942137 | 4942395 | 4942137 | ID=cds.MS.gene66459.t1;Parent=MS.gene66459.t1 |
| chr1.4 | exon | 4943326 | 4944569 | 4943326 | ID=MS.gene66459.t1.exon3;Parent=MS.gene66459.t1 |
| chr1.4 | CDS | 4943326 | 4944569 | 4943326 | ID=cds.MS.gene66459.t1;Parent=MS.gene66459.t1 |
| chr1.4 | exon | 4944821 | 4944968 | 4944821 | ID=MS.gene66459.t1.exon4;Parent=MS.gene66459.t1 |
| chr1.4 | CDS | 4944821 | 4944968 | 4944821 | ID=cds.MS.gene66459.t1;Parent=MS.gene66459.t1 |
| chr1.4 | exon | 4945108 | 4945418 | 4945108 | ID=MS.gene66459.t1.exon5;Parent=MS.gene66459.t1 |
| chr1.4 | CDS | 4945108 | 4945418 | 4945108 | ID=cds.MS.gene66459.t1;Parent=MS.gene66459.t1 |
| Gene Sequence |
| Protein sequence |
