Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036249.t1 | XP_013468608.1 | 98 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.00E+00 | 1980.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036249.t1 | Q9HCG7 | 40.9 | 888 | 412 | 17 | 56 | 933 | 106 | 890 | 1.9e-176 | 621.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036249.t1 | A0A072VX24 | 98.0 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0e+00 | 1980.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene036249 | MS.gene95043 | PPI |
| MS.gene036249 | MS.gene042041 | PPI |
| MS.gene036249 | MS.gene43487 | PPI |
| MS.gene036249 | MS.gene012798 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036249.t1 | MTR_1g072720 | 97.951 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0 | 2005 |
| MS.gene036249.t1 | MTR_1g072720 | 97.927 | 965 | 20 | 0 | 1 | 965 | 7 | 971 | 0.0 | 1985 |
| MS.gene036249.t1 | MTR_4g134760 | 51.848 | 920 | 383 | 14 | 31 | 937 | 31 | 903 | 0.0 | 931 |
| MS.gene036249.t1 | MTR_4g134760 | 52.680 | 765 | 310 | 10 | 184 | 937 | 1 | 724 | 0.0 | 781 |
| MS.gene036249.t1 | MTR_4g134760 | 51.416 | 671 | 275 | 9 | 278 | 937 | 3 | 633 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene036249.t1 | AT3G24180 | 75.079 | 955 | 205 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1466 |
| MS.gene036249.t1 | AT3G24180 | 75.079 | 955 | 205 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1466 |
| MS.gene036249.t1 | AT5G49900 | 52.136 | 913 | 387 | 9 | 30 | 934 | 23 | 893 | 0.0 | 941 |
| MS.gene036249.t1 | AT5G49900 | 52.136 | 913 | 387 | 9 | 30 | 934 | 23 | 893 | 0.0 | 941 |
| MS.gene036249.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene036249.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene036249.t1 | AT1G33700 | 49.672 | 916 | 413 | 11 | 30 | 937 | 13 | 888 | 0.0 | 878 |
| MS.gene036249.t1 | AT1G33700 | 48.919 | 879 | 401 | 11 | 30 | 900 | 13 | 851 | 0.0 | 826 |
| MS.gene036249.t1 | AT5G49900 | 52.474 | 667 | 269 | 7 | 278 | 934 | 3 | 631 | 0.0 | 671 |
| MS.gene036249.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.54e-137 | 435 |
| MS.gene036249.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 2.51e-136 | 433 |
| MS.gene036249.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.54e-137 | 435 |
| MS.gene036249.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 2.51e-136 | 433 |
Find 236 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTGAAGTACAAATTT+TGG | 0.115897 | 1.3:-52378382 | None:intergenic |
| TGGGGAACTCGTAAGGTTTA+TGG | 0.186018 | 1.3:+52378268 | MS.gene036249:CDS |
| TGGGGCTGTCCCACATGATT+TGG | 0.240059 | 1.3:+52378288 | MS.gene036249:CDS |
| GGGGCTGTCCCACATGATTT+GGG | 0.240329 | 1.3:+52378289 | MS.gene036249:CDS |
| GATCGGGAAAATTTCTCTTC+TGG | 0.243513 | 1.3:+52376169 | MS.gene036249:CDS |
| ATATGAGGCCACTGTCAATT+TGG | 0.255376 | 1.3:+52379553 | MS.gene036249:CDS |
| GCAACAGGTGATTTGCAATT+TGG | 0.258666 | 1.3:+52378418 | MS.gene036249:CDS |
| GTGCTTACTGTGGTGGTCTT+TGG | 0.276640 | 1.3:+52378572 | MS.gene036249:CDS |
| TCTAAATTCTTTAAGAAGAT+TGG | 0.284924 | 1.3:-52369794 | None:intergenic |
| TTCAATGTGATGAAAGTTAA+AGG | 0.285157 | 1.3:+52378868 | MS.gene036249:CDS |
| TGGAAGGAGAGTAAAGTTTC+TGG | 0.290455 | 1.3:+52378234 | MS.gene036249:CDS |
| AGTTTCTGGCAGAGGGAAAC+TGG | 0.296329 | 1.3:+52378248 | MS.gene036249:CDS |
| AGAGATATATCCCATGAAAA+TGG | 0.299499 | 1.3:+52377968 | MS.gene036249:CDS |
| CTTCTTCTCCAAGCTTGTTC+AGG | 0.312960 | 1.3:-52369757 | None:intergenic |
| TCCAGGTGATGAGGGCATGC+TGG | 0.316468 | 1.3:-52376194 | None:intergenic |
| TTACCGCCCAAGTAAATAAA+AGG | 0.316621 | 1.3:-52373709 | None:intergenic |
| TATGAGGCCACTGTCAATTT+GGG | 0.322102 | 1.3:+52379554 | MS.gene036249:CDS |
| GGGGAACTCGTAAGGTTTAT+GGG | 0.328245 | 1.3:+52378269 | MS.gene036249:CDS |
| GGCAGAATGGGTGCTGTAAA+TGG | 0.328598 | 1.3:+52378892 | MS.gene036249:CDS |
| TTATGTAATCCTCCTCTAAC+AGG | 0.337687 | 1.3:-52379657 | None:intergenic |
| TTGAAATTCCAGGTTCGATT+AGG | 0.338785 | 1.3:+52370012 | MS.gene036249:intron |
| GGCCCCTAAAATTAACTTCA+TGG | 0.344736 | 1.3:+52379617 | MS.gene036249:CDS |
| AAAAGGAATGTGGACTAAAA+TGG | 0.348084 | 1.3:+52375998 | MS.gene036249:CDS |
| TCATGGGGATGGAATCTAAA+TGG | 0.351315 | 1.3:+52372586 | MS.gene036249:CDS |
| TAACCCAAAATTTGTACTTC+AGG | 0.352766 | 1.3:+52378378 | MS.gene036249:CDS |
| GAACTCTACTTTCTTGTTGC+TGG | 0.357509 | 1.3:+52377609 | MS.gene036249:CDS |
| TAAACTAAGAATTACCATTC+TGG | 0.363223 | 1.3:-52376967 | None:intergenic |
| TACGCATGTGGTCATATGTT+AGG | 0.366133 | 1.3:+52370037 | MS.gene036249:CDS |
| TTGTTGCTGGAGGAACAATT+TGG | 0.366760 | 1.3:+52377622 | MS.gene036249:CDS |
| CCTTTCACAAACTTCACTTT+CGG | 0.380322 | 1.3:-52376304 | None:intergenic |
| GGGGCCTCAAGTACTGCCTT+TGG | 0.382148 | 1.3:-52379600 | None:intergenic |
| CATGTATCATATGTTTGATC+AGG | 0.387198 | 1.3:-52378532 | None:intergenic |
| GATCTTGTGCAGAATTCTAT+TGG | 0.388602 | 1.3:+52373809 | MS.gene036249:intron |
| AGGGGTTCCACTTGGAGGGA+TGG | 0.398673 | 1.3:+52370283 | MS.gene036249:CDS |
| GTATGCAGTCTCGAGAGATA+TGG | 0.400049 | 1.3:+52378947 | MS.gene036249:CDS |
| AGACAATGGCAAATTATTCC+TGG | 0.403958 | 1.3:+52370528 | MS.gene036249:CDS |
| CCAGGTGATGAGGGCATGCT+GGG | 0.407317 | 1.3:-52376193 | None:intergenic |
| AGCTTCTCTACGAGAGTGTT+GGG | 0.413362 | 1.3:-52379812 | None:intergenic |
| TGTAATTATGTGGTATGAAA+GGG | 0.414470 | 1.3:-52372788 | None:intergenic |
| ATCCACCTATCTCCTGTTAG+AGG | 0.417590 | 1.3:+52379645 | MS.gene036249:CDS |
| TAGCAGGAAAGCTGATGATC+AGG | 0.417934 | 1.3:+52372555 | MS.gene036249:CDS |
| CCCAGCATGCCCTCATCACC+TGG | 0.423292 | 1.3:+52376193 | MS.gene036249:CDS |
| AGCCAATTGATCGGCTTGAA+TGG | 0.427786 | 1.3:-52378761 | None:intergenic |
| TCCGTTTCTGAGAGTATTCA+CGG | 0.428112 | 1.3:-52377993 | None:intergenic |
| GGGGTTCCACTTGGAGGGAT+GGG | 0.431136 | 1.3:+52370284 | MS.gene036249:CDS |
| TCGAATAACTGAAGCTAAAG+TGG | 0.432514 | 1.3:+52377850 | MS.gene036249:CDS |
| ATCCATTCAAGCCGATCAAT+TGG | 0.432522 | 1.3:+52378759 | MS.gene036249:CDS |
| ATGGCAGGATCCTATTCTTA+AGG | 0.433320 | 1.3:+52376933 | MS.gene036249:CDS |
| GGAGGATTACATAAAGAAAC+AGG | 0.434463 | 1.3:+52379666 | MS.gene036249:CDS |
| AGAGCTGAAGATGGCGTCTC+CGG | 0.438417 | 1.3:+52373975 | MS.gene036249:intron |
| TGAAAGGCAGCACTTTCAAC+AGG | 0.441957 | 1.3:+52376320 | MS.gene036249:CDS |
| ATGCTTTGTTTCCAAGAGCT+TGG | 0.444285 | 1.3:+52372626 | MS.gene036249:CDS |
| TGCTGTTTCAGCTTCCGCAT+GGG | 0.448130 | 1.3:+52376231 | MS.gene036249:CDS |
| CTATGATTCTACTGCTCCTA+GGG | 0.448143 | 1.3:+52377916 | MS.gene036249:CDS |
| CCTATGATTCTACTGCTCCT+AGG | 0.449205 | 1.3:+52377915 | MS.gene036249:CDS |
| TCTCGAGTGAAAGGATCTAT+AGG | 0.449861 | 1.3:-52370236 | None:intergenic |
| AGCATATCAAGAGGATTTAG+AGG | 0.452153 | 1.3:+52370498 | MS.gene036249:CDS |
| CAATGGTATACAGCATCCTC+AGG | 0.452922 | 1.3:+52378787 | MS.gene036249:CDS |
| CTTCTCCAAGCTTGTTCAGG+AGG | 0.456855 | 1.3:-52369754 | None:intergenic |
| AAATGAGACTTACAGAGAAC+TGG | 0.459619 | 1.3:-52370581 | None:intergenic |
| CGAAGTAGCGTAACAGCAAA+AGG | 0.462013 | 1.3:+52375981 | MS.gene036249:CDS |
| TCCATTGCAGCTCGGACAGC+AGG | 0.462620 | 1.3:-52378454 | None:intergenic |
| CTGCTGTTTCAGCTTCCGCA+TGG | 0.463351 | 1.3:+52376230 | MS.gene036249:CDS |
| TGGTGGAAGGTTCTTGTACT+TGG | 0.463613 | 1.3:+52378081 | MS.gene036249:CDS |
| TGCTGTTACGCTACTTCGGT+CGG | 0.464082 | 1.3:-52375976 | None:intergenic |
| TCATAAACAGTCCAAGCTCT+TGG | 0.465016 | 1.3:-52372637 | None:intergenic |
| GCTGCAACAATGATACTTGC+AGG | 0.465363 | 1.3:+52378991 | MS.gene036249:CDS |
| GCCTGCTGTCCGAGCTGCAA+TGG | 0.466643 | 1.3:+52378453 | MS.gene036249:CDS |
| TGAGAGAGCTGCAGTGCACC+TGG | 0.469761 | 1.3:+52376699 | MS.gene036249:CDS |
| TAAGGATGGGCAATTTGATC+GGG | 0.470665 | 1.3:+52376153 | MS.gene036249:intron |
| GGGTTCCACTTGGAGGGATG+GGG | 0.471807 | 1.3:+52370285 | MS.gene036249:CDS |
| CTGTAATTATGTGGTATGAA+AGG | 0.472855 | 1.3:-52372789 | None:intergenic |
| CCAGAGGCATTTACAATTGA+CGG | 0.473164 | 1.3:+52379510 | MS.gene036249:CDS |
| TTCATTGTAGAAAGAATTCG+TGG | 0.473789 | 1.3:+52369145 | MS.gene036249:CDS |
| CTGCTCCTCCTGAACAAGCT+TGG | 0.474967 | 1.3:+52369749 | MS.gene036249:CDS |
| CAAGCTGTCCTGTGTGAAGA+TGG | 0.475037 | 1.3:+52378214 | MS.gene036249:CDS |
| ATTCAAGCCGATCAATTGGC+TGG | 0.479609 | 1.3:+52378763 | MS.gene036249:CDS |
| CTGCTTTCTCTGTAATTATG+TGG | 0.483079 | 1.3:-52372798 | None:intergenic |
| AAAGTTAAAGGCGGCAGAAT+GGG | 0.484438 | 1.3:+52378880 | MS.gene036249:CDS |
| TAAGCATTCATTTCATGCCA+TGG | 0.484899 | 1.3:-52378322 | None:intergenic |
| CCTAGGAGCAGTAGAATCAT+AGG | 0.487066 | 1.3:-52377915 | None:intergenic |
| TATGCAGTCTCGAGAGATAT+GGG | 0.488836 | 1.3:+52378948 | MS.gene036249:CDS |
| GGTGGGAACTCTCACTTGTC+AGG | 0.489914 | 1.3:+52373830 | MS.gene036249:CDS |
| ACAGTGGCCTCATATATATG+AGG | 0.491959 | 1.3:-52379545 | None:intergenic |
| TTCATTCACAGAGCTGAAGA+TGG | 0.492280 | 1.3:+52373966 | MS.gene036249:intron |
| TCTCAAGGGGTTCCACTTGG+AGG | 0.494410 | 1.3:+52370278 | MS.gene036249:CDS |
| ACGCATGTGGTCATATGTTA+GGG | 0.494682 | 1.3:+52370038 | MS.gene036249:CDS |
| TTGGCTCCTGGTCAGCATGA+AGG | 0.494876 | 1.3:+52371654 | MS.gene036249:CDS |
| TTAAGGATGGGCAATTTGAT+CGG | 0.495077 | 1.3:+52376152 | MS.gene036249:intron |
| CCGAGCTGCAATGGAGTACA+TGG | 0.495164 | 1.3:+52378462 | MS.gene036249:CDS |
| AACATAACATACCAACTGTA+AGG | 0.499287 | 1.3:-52369196 | None:intergenic |
| GGGAAGAAGAGATTGCAAAA+TGG | 0.500460 | 1.3:+52376914 | MS.gene036249:CDS |
| CCGTCAATTGTAAATGCCTC+TGG | 0.500631 | 1.3:-52379510 | None:intergenic |
| ATCGGTCCCTCATATATATG+AGG | 0.500839 | 1.3:+52379538 | MS.gene036249:CDS |
| CAGCTTCTCTACGAGAGTGT+TGG | 0.501196 | 1.3:-52379813 | None:intergenic |
| AGCTTCTCATCCTTAAGAAT+AGG | 0.503401 | 1.3:-52376943 | None:intergenic |
| ATGATCAGGGTATATCATCA+TGG | 0.507713 | 1.3:+52372569 | MS.gene036249:CDS |
| TTGTCAATGCATCATGAGCC+AGG | 0.508522 | 1.3:-52376717 | None:intergenic |
| TTGCAACTTTCTCGAGTGAA+AGG | 0.510427 | 1.3:-52370245 | None:intergenic |
| GTTTCATCCACCTTACCGTT+GGG | 0.511276 | 1.3:-52378922 | None:intergenic |
| GAGAACTGGTTGGCCATGAC+AGG | 0.513003 | 1.3:-52370567 | None:intergenic |
| ATCCTCCTCTAACAGGAGAT+AGG | 0.513477 | 1.3:-52379650 | None:intergenic |
| GATGGTCTTATTGAGAATGA+TGG | 0.516775 | 1.3:+52378505 | MS.gene036249:CDS |
| TCTTCAAGCTGCAGCTGCAA+TGG | 0.516844 | 1.3:+52378603 | MS.gene036249:CDS |
| CCTGGTCAGCATGAAGGTGT+AGG | 0.519673 | 1.3:+52371660 | MS.gene036249:CDS |
| CTGATCAAACATATGATACA+TGG | 0.520231 | 1.3:+52378533 | MS.gene036249:CDS |
| GGCTGGTCAGAAGAAGGATA+CGG | 0.520711 | 1.3:+52379060 | MS.gene036249:CDS |
| CTCTACTTTCTTGTTGCTGG+AGG | 0.522845 | 1.3:+52377612 | MS.gene036249:CDS |
| GAAAGTTAAAGGCGGCAGAA+TGG | 0.527675 | 1.3:+52378879 | MS.gene036249:CDS |
| ATGCAAAAGGAAGTTTATGA+AGG | 0.528934 | 1.3:+52378660 | MS.gene036249:CDS |
| ACCGTGAATACTCTCAGAAA+CGG | 0.528941 | 1.3:+52377992 | MS.gene036249:CDS |
| TGCAATTTGGTGTCGATGTG+TGG | 0.529941 | 1.3:+52378431 | MS.gene036249:CDS |
| TCAAGATCAAAAGTTCTCTC+CGG | 0.530516 | 1.3:+52378833 | MS.gene036249:CDS |
| AAAATGGTGGTCAAGGGCCG+GGG | 0.531144 | 1.3:+52379839 | MS.gene036249:CDS |
| GGTTTCATCCACCTTACCGT+TGG | 0.531435 | 1.3:-52378923 | None:intergenic |
| CAGAGGCATTTACAATTGAC+GGG | 0.533907 | 1.3:+52379511 | MS.gene036249:CDS |
| GCATCTCAAGGGGTTCCACT+TGG | 0.534772 | 1.3:+52370275 | MS.gene036249:CDS |
| CTGTTGCATTTAGTCTTGCA+TGG | 0.535873 | 1.3:+52376275 | MS.gene036249:CDS |
| CTAGCAGGCTGGTCAGAAGA+AGG | 0.537501 | 1.3:+52379054 | MS.gene036249:CDS |
| TGATCAGGGTATATCATCAT+GGG | 0.539292 | 1.3:+52372570 | MS.gene036249:CDS |
| ATTCTTTAAGAAGATTGGCA+TGG | 0.539896 | 1.3:-52369789 | None:intergenic |
| GTTTCTGGCAGAGGGAAACT+GGG | 0.542995 | 1.3:+52378249 | MS.gene036249:CDS |
| GCTGAGGGTATATTTCTAGC+AGG | 0.543807 | 1.3:+52379039 | MS.gene036249:CDS |
| TTACAATTGACGGGCACTAT+CGG | 0.545338 | 1.3:+52379520 | MS.gene036249:CDS |
| GAGAGTAAAGTTTCTGGCAG+AGG | 0.545432 | 1.3:+52378240 | MS.gene036249:CDS |
| GGAAGGTTCTTGTACTTGGA+AGG | 0.545489 | 1.3:+52378085 | MS.gene036249:CDS |
| CCTACACCTTCATGCTGACC+AGG | 0.546036 | 1.3:-52371660 | None:intergenic |
| AACAATGATACTTGCAGGAA+TGG | 0.546051 | 1.3:+52378996 | MS.gene036249:CDS |
| TGCAAGCCATCTGCATCTCA+AGG | 0.547185 | 1.3:+52370263 | MS.gene036249:CDS |
| GTGGTCATATGTTAGGGAAG+AGG | 0.550645 | 1.3:+52370044 | MS.gene036249:CDS |
| GGGAAGAGGCTTCTCATGGA+AGG | 0.551137 | 1.3:+52370058 | MS.gene036249:CDS |
| GTTAGGGAAGAGGCTTCTCA+TGG | 0.552515 | 1.3:+52370054 | MS.gene036249:CDS |
| AGAAGAGATTGCAAAATGGC+AGG | 0.552563 | 1.3:+52376918 | MS.gene036249:CDS |
| AGGGTATATCATCATGGGGA+TGG | 0.552996 | 1.3:+52372575 | MS.gene036249:CDS |
| AGAGCTTGGACTGTTTATGA+TGG | 0.553201 | 1.3:+52372640 | MS.gene036249:CDS |
| GGGAAACTGGGGAACTCGTA+AGG | 0.554907 | 1.3:+52378261 | MS.gene036249:CDS |
| CTCAAGGGGTTCCACTTGGA+GGG | 0.555712 | 1.3:+52370279 | MS.gene036249:CDS |
| TAGTGTCTCTCCAGGTGATG+AGG | 0.558574 | 1.3:-52376203 | None:intergenic |
| CTGGTCAGCATGAAGGTGTA+GGG | 0.558732 | 1.3:+52371661 | MS.gene036249:CDS |
| CCGATCAATTGGCTGGGCAA+TGG | 0.559132 | 1.3:+52378770 | MS.gene036249:CDS |
| ACATTCATGATACTAGTAAG+TGG | 0.559226 | 1.3:+52378347 | MS.gene036249:CDS |
| AGGGTATATTTCTAGCAGGC+TGG | 0.559806 | 1.3:+52379043 | MS.gene036249:CDS |
| GCTGGAGGAACAATTTGGAT+AGG | 0.560165 | 1.3:+52377627 | MS.gene036249:CDS |
| CAGTCTCGAGAGATATGGGC+AGG | 0.560172 | 1.3:+52378952 | MS.gene036249:CDS |
| TTGTGCAGAATTCTATTGGT+GGG | 0.560692 | 1.3:+52373813 | MS.gene036249:intron |
| TATCTCTCGAGACTGCATAC+AGG | 0.561033 | 1.3:-52378944 | None:intergenic |
| AAGCATGGTACGTTGAGTGC+TGG | 0.564049 | 1.3:-52372609 | None:intergenic |
| TTCAAGCCGATCAATTGGCT+GGG | 0.565771 | 1.3:+52378764 | MS.gene036249:CDS |
| GTTCTTGTACTTGGAAGGTG+TGG | 0.567369 | 1.3:+52378090 | MS.gene036249:CDS |
| TTATTGATATACTCTTCGGT+AGG | 0.572408 | 1.3:-52369168 | None:intergenic |
| AGTGTCTCTCCAGGTGATGA+GGG | 0.572454 | 1.3:-52376202 | None:intergenic |
| CCATGTACTCCATTGCAGCT+CGG | 0.573822 | 1.3:-52378462 | None:intergenic |
| GCAGCACATAGTGTCTCTCC+AGG | 0.574981 | 1.3:-52376211 | None:intergenic |
| ATGTGAACCATCACCTGTCA+TGG | 0.576503 | 1.3:+52370554 | MS.gene036249:CDS |
| AAATATGAGAAATAATAGCC+AGG | 0.577227 | 1.3:+52377796 | MS.gene036249:CDS |
| TGGCATGCATCCCAACGGTA+AGG | 0.577901 | 1.3:+52378912 | MS.gene036249:CDS |
| CCATTGCCCAGCCAATTGAT+CGG | 0.578065 | 1.3:-52378770 | None:intergenic |
| GCTGCAATGGCGATTCAACT+AGG | 0.581074 | 1.3:+52378616 | MS.gene036249:CDS |
| CCGAAAGTGAAGTTTGTGAA+AGG | 0.581461 | 1.3:+52376304 | MS.gene036249:CDS |
| CAATAAAACCACCTTACAGT+TGG | 0.581904 | 1.3:+52369185 | MS.gene036249:CDS |
| GCAAGCCATCTGCATCTCAA+GGG | 0.582594 | 1.3:+52370264 | MS.gene036249:CDS |
| GATCAAAAGTTCTCTCCGGA+AGG | 0.582612 | 1.3:+52378837 | MS.gene036249:CDS |
| TATGAACAAAAGCTGTGGAA+TGG | 0.583308 | 1.3:+52378694 | MS.gene036249:CDS |
| CATGCATCCCAACGGTAAGG+TGG | 0.585856 | 1.3:+52378915 | MS.gene036249:CDS |
| AGAGTAAAGTTTCTGGCAGA+GGG | 0.586626 | 1.3:+52378241 | MS.gene036249:CDS |
| CGAAACAGATTATACACGGT+GGG | 0.586630 | 1.3:+52376894 | MS.gene036249:intron |
| CGGTCGGACAGCCCAAAACA+TGG | 0.589504 | 1.3:-52375960 | None:intergenic |
| ATGTATCATATGTTTGATCA+GGG | 0.589770 | 1.3:-52378531 | None:intergenic |
| TCCGCATGGGTGGAACCCCA+TGG | 0.592731 | 1.3:+52376244 | MS.gene036249:CDS |
| TGTTTCAGCTTCCGCATGGG+TGG | 0.593550 | 1.3:+52376234 | MS.gene036249:CDS |
| GAGGCCTTCACAACTGCTGA+GGG | 0.595335 | 1.3:+52379024 | MS.gene036249:CDS |
| CATGATGATGATAATGATGA+TGG | 0.598644 | 1.3:+52378061 | MS.gene036249:CDS |
| GATGATGATAATGATGATGG+TGG | 0.599702 | 1.3:+52378064 | MS.gene036249:CDS |
| TATACCCTCAGCAGTTGTGA+AGG | 0.600362 | 1.3:-52379028 | None:intergenic |
| GCTGGTCAGAAGAAGGATAC+GGG | 0.601383 | 1.3:+52379061 | MS.gene036249:CDS |
| ACTTGCAGGAATGGAAGAAG+AGG | 0.601561 | 1.3:+52379005 | MS.gene036249:CDS |
| CACCTATCTCCTGTTAGAGG+AGG | 0.602664 | 1.3:+52379648 | MS.gene036249:CDS |
| ATATGGGCAGGTGTGACCTA+CGG | 0.602987 | 1.3:+52378964 | MS.gene036249:CDS |
| GCGTAACAGCAAAAGGAATG+TGG | 0.603596 | 1.3:+52375988 | MS.gene036249:CDS |
| CTCTCCTTCCATCTTCACAC+AGG | 0.603646 | 1.3:-52378222 | None:intergenic |
| ATTTGGGGACACATGATCCA+TGG | 0.607898 | 1.3:+52378305 | MS.gene036249:CDS |
| CTCCTCTAACAGGAGATAGG+TGG | 0.608598 | 1.3:-52379647 | None:intergenic |
| GTAATTATGTGGTATGAAAG+GGG | 0.610838 | 1.3:-52372787 | None:intergenic |
| AGCAGGAAAGCTGATGATCA+GGG | 0.611643 | 1.3:+52372556 | MS.gene036249:CDS |
| GGGTTAGTAACAGTGTGAAG+AGG | 0.611676 | 1.3:-52379792 | None:intergenic |
| TATGCCAAAGGCAGTACTTG+AGG | 0.611801 | 1.3:+52379596 | MS.gene036249:CDS |
| AGAGGCCTTCACAACTGCTG+AGG | 0.613758 | 1.3:+52379023 | MS.gene036249:CDS |
| GGTGTGAGTGCTTACTGTGG+TGG | 0.615502 | 1.3:+52378565 | MS.gene036249:CDS |
| TCCTAGGGGACATAGTCACT+TGG | 0.616516 | 1.3:+52377931 | MS.gene036249:CDS |
| TCCAAGTGACTATGTCCCCT+AGG | 0.619743 | 1.3:-52377932 | None:intergenic |
| GATTTGGAAAGAATGGTTAG+CGG | 0.622055 | 1.3:+52369114 | None:intergenic |
| CACAGTAAGCACTCACACCA+TGG | 0.625608 | 1.3:-52378561 | None:intergenic |
| GGAAGAGGCTTCTCATGGAA+GGG | 0.626324 | 1.3:+52370059 | MS.gene036249:CDS |
| TGGTTGGCCATGACAGGTGA+TGG | 0.630994 | 1.3:-52370561 | None:intergenic |
| ATGAGGCCACTGTCAATTTG+GGG | 0.631387 | 1.3:+52379555 | MS.gene036249:CDS |
| AGGATGAGAAGCTACCAGAA+TGG | 0.634200 | 1.3:+52376953 | MS.gene036249:CDS |
| AATGTGGACTAAAATGGTGA+AGG | 0.634442 | 1.3:+52376004 | MS.gene036249:CDS |
| GGGCTGTCCCACATGATTTG+GGG | 0.634911 | 1.3:+52378290 | MS.gene036249:CDS |
| CTGTCCTGTGTGAAGATGGA+AGG | 0.636012 | 1.3:+52378218 | MS.gene036249:CDS |
| TATGATACATGGACTGTCCA+TGG | 0.636500 | 1.3:+52378544 | MS.gene036249:CDS |
| CAAGCCATCTGCATCTCAAG+GGG | 0.636690 | 1.3:+52370265 | MS.gene036249:CDS |
| TGTATATTTAATTCAATACG+AGG | 0.637943 | 1.3:-52378178 | None:intergenic |
| GGAACCCCTTGAGATGCAGA+TGG | 0.638569 | 1.3:-52370269 | None:intergenic |
| CAGTGGCCTCATATATATGA+GGG | 0.641376 | 1.3:-52379544 | None:intergenic |
| TTCGATTAGGTATACGCATG+TGG | 0.644863 | 1.3:+52370025 | MS.gene036249:CDS |
| TCATACCCCATCCCTCCAAG+TGG | 0.648533 | 1.3:-52370290 | None:intergenic |
| CTTGTGCAGAATTCTATTGG+TGG | 0.648579 | 1.3:+52373812 | MS.gene036249:intron |
| TCATGTGTCCCCAAATCATG+TGG | 0.650108 | 1.3:-52378298 | None:intergenic |
| ATATGCATTAACTATGCCAA+AGG | 0.651288 | 1.3:+52379584 | MS.gene036249:CDS |
| CATTGTTGCAGCAACACCGT+AGG | 0.654279 | 1.3:-52378980 | None:intergenic |
| ATGATAATGATGATGGTGGA+AGG | 0.654300 | 1.3:+52378068 | MS.gene036249:CDS |
| AAGCTCTTGGAAACAAAGCA+TGG | 0.659885 | 1.3:-52372624 | None:intergenic |
| CAATTCGATAGAGATGCTGA+TGG | 0.661858 | 1.3:+52378487 | MS.gene036249:CDS |
| AGGAGTGGCAGCATATCAAG+AGG | 0.664942 | 1.3:+52370489 | MS.gene036249:intron |
| TACAAGTTACAACTGAACCC+CGG | 0.668319 | 1.3:-52379856 | None:intergenic |
| GGGAACTCGTAAGGTTTATG+GGG | 0.669077 | 1.3:+52378270 | MS.gene036249:CDS |
| TCCATGGGGTTCCACCCATG+CGG | 0.669209 | 1.3:-52376245 | None:intergenic |
| GTAAATGGCATGCATCCCAA+CGG | 0.671633 | 1.3:+52378907 | MS.gene036249:CDS |
| CAGTATATGAACAAAAGCTG+TGG | 0.672417 | 1.3:+52378689 | MS.gene036249:CDS |
| TTAGAGGTGAATTCAGACAA+TGG | 0.673231 | 1.3:+52370514 | MS.gene036249:CDS |
| AATGGTATACAGCATCCTCA+GGG | 0.677357 | 1.3:+52378788 | MS.gene036249:CDS |
| CATGTGTCCCCAAATCATGT+GGG | 0.677655 | 1.3:-52378297 | None:intergenic |
| GATCAGGGTATATCATCATG+GGG | 0.682964 | 1.3:+52372571 | MS.gene036249:CDS |
| GAGACTTACAGAGAACTGGT+TGG | 0.687892 | 1.3:-52370577 | None:intergenic |
| GGTGATGGTTCACATAGACC+AGG | 0.689207 | 1.3:-52370546 | None:intergenic |
| ATAACATACCAACTGTAAGG+TGG | 0.689223 | 1.3:-52369193 | None:intergenic |
| GAATCGAAACAGATTATACA+CGG | 0.692636 | 1.3:+52376890 | MS.gene036249:intron |
| TGCATGCCCCAAATTGACAG+TGG | 0.696126 | 1.3:-52379561 | None:intergenic |
| CATGGTGTGAGTGCTTACTG+TGG | 0.707900 | 1.3:+52378562 | MS.gene036249:CDS |
| CTTGTGATATAGAAGTACGC+CGG | 0.716435 | 1.3:-52373994 | None:intergenic |
| AATGTGATGAAAGTTAAAGG+CGG | 0.717612 | 1.3:+52378871 | MS.gene036249:CDS |
| TTTCTGGCAGAGGGAAACTG+GGG | 0.722226 | 1.3:+52378250 | MS.gene036249:CDS |
| TCGAAACAGATTATACACGG+TGG | 0.728849 | 1.3:+52376893 | MS.gene036249:intron |
| TATGATTCTACTGCTCCTAG+GGG | 0.747175 | 1.3:+52377917 | MS.gene036249:CDS |
| ATACTGGTTTCAGACTCCAG+AGG | 0.761858 | 1.3:+52379494 | MS.gene036249:CDS |
| AAGGTGTGGAATATGTCATG+TGG | 0.762463 | 1.3:+52378104 | MS.gene036249:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 52369126 | 52379879 | 52369126 | ID=MS.gene036249 |
| chr1.3 | mRNA | 52369126 | 52379879 | 52369126 | ID=MS.gene036249.t1;Parent=MS.gene036249 |
| chr1.3 | exon | 52369126 | 52369206 | 52369126 | ID=MS.gene036249.t1.exon1;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52369126 | 52369206 | 52369126 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52369733 | 52369843 | 52369733 | ID=MS.gene036249.t1.exon2;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52369733 | 52369843 | 52369733 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52370024 | 52370080 | 52370024 | ID=MS.gene036249.t1.exon3;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52370024 | 52370080 | 52370024 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52370230 | 52370306 | 52370230 | ID=MS.gene036249.t1.exon4;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52370230 | 52370306 | 52370230 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52370491 | 52370590 | 52370491 | ID=MS.gene036249.t1.exon5;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52370491 | 52370590 | 52370491 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52371609 | 52371682 | 52371609 | ID=MS.gene036249.t1.exon6;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52371609 | 52371682 | 52371609 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52372552 | 52372661 | 52372552 | ID=MS.gene036249.t1.exon7;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52372552 | 52372661 | 52372552 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52372745 | 52372848 | 52372745 | ID=MS.gene036249.t1.exon8;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52372745 | 52372848 | 52372745 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52373674 | 52373727 | 52373674 | ID=MS.gene036249.t1.exon9;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52373674 | 52373727 | 52373674 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52373821 | 52373876 | 52373821 | ID=MS.gene036249.t1.exon10;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52373821 | 52373876 | 52373821 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52373977 | 52374015 | 52373977 | ID=MS.gene036249.t1.exon11;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52373977 | 52374015 | 52373977 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52375884 | 52376025 | 52375884 | ID=MS.gene036249.t1.exon12;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52375884 | 52376025 | 52375884 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52376157 | 52376341 | 52376157 | ID=MS.gene036249.t1.exon13;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52376157 | 52376341 | 52376157 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52376672 | 52376739 | 52376672 | ID=MS.gene036249.t1.exon14;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52376672 | 52376739 | 52376672 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52376902 | 52376974 | 52376902 | ID=MS.gene036249.t1.exon15;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52376902 | 52376974 | 52376902 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52377587 | 52377648 | 52377587 | ID=MS.gene036249.t1.exon16;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52377587 | 52377648 | 52377587 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52377777 | 52379082 | 52377777 | ID=MS.gene036249.t1.exon17;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52377777 | 52379082 | 52377777 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52379494 | 52379687 | 52379494 | ID=MS.gene036249.t1.exon18;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52379494 | 52379687 | 52379494 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| chr1.3 | exon | 52379788 | 52379879 | 52379788 | ID=MS.gene036249.t1.exon19;Parent=MS.gene036249.t1 |
| chr1.3 | CDS | 52379788 | 52379879 | 52379788 | ID=cds.MS.gene036249.t1;Parent=MS.gene036249.t1 |
| Gene Sequence |
| Protein sequence |
