AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037272

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037272.t1 MTR_1g112630 97.291 443 12 0 2 444 25 467 0.0 904
MS.gene037272.t1 MTR_4g037105 91.422 443 37 1 2 444 24 465 0.0 848
MS.gene037272.t1 MTR_0188s0020 83.937 442 70 1 3 444 31 471 0.0 783
MS.gene037272.t1 MTR_4g115670 59.722 432 170 3 2 432 24 452 0.0 540
MS.gene037272.t1 MTR_3g051240 43.035 402 198 10 27 427 39 410 1.08e-95 295
MS.gene037272.t1 MTR_5g092360 41.707 410 210 9 33 441 49 430 2.21e-95 294
MS.gene037272.t1 MTR_1g060360 41.919 396 202 10 33 427 46 414 7.09e-92 285
MS.gene037272.t1 MTR_7g104330 41.814 397 201 10 33 427 54 422 1.33e-91 285
MS.gene037272.t1 MTR_7g104360 40.250 400 208 11 31 427 45 416 4.34e-88 275
MS.gene037272.t1 MTR_6g013050 34.004 447 212 12 43 422 89 519 2.23e-72 239
MS.gene037272.t1 MTR_3g083810 37.215 395 173 9 88 423 143 521 2.84e-72 237
MS.gene037272.t1 MTR_3g083820 37.215 395 173 9 88 423 143 521 3.80e-71 234
MS.gene037272.t1 MTR_7g056403 35.581 430 194 12 60 423 108 520 4.98e-71 234
MS.gene037272.t1 MTR_6g013050 33.255 427 202 12 43 402 89 499 1.17e-64 217
MS.gene037272.t1 MTR_1g052505 26.225 408 211 15 25 370 183 562 3.67e-29 120
MS.gene037272.t1 MTR_4g037670 27.895 380 202 15 28 370 237 581 5.83e-28 117
MS.gene037272.t1 MTR_4g082930 24.573 468 271 16 12 417 125 572 5.31e-21 96.3
MS.gene037272.t1 MTR_3g074930 25.627 359 220 16 92 417 256 600 2.34e-19 91.3
MS.gene037272.t1 MTR_3g074930 25.627 359 220 16 92 417 249 593 2.51e-19 90.9
MS.gene037272.t1 MTR_4g103520 25.915 355 224 13 92 417 176 520 5.97e-19 89.7
MS.gene037272.t1 MTR_4g103520 25.915 355 224 13 92 417 253 597 6.50e-19 89.7
MS.gene037272.t1 MTR_5g045600 25.405 370 207 14 92 417 245 589 1.46e-18 88.6
MS.gene037272.t1 MTR_8g063080 24.054 370 212 15 92 417 238 582 5.40e-17 84.0
MS.gene037272.t1 MTR_4g082940 25.424 236 149 8 200 417 332 558 2.23e-13 72.8
MS.gene037272.t1 MTR_3g074970 22.817 355 190 13 92 417 198 497 1.41e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037272.t1 AT2G16430 77.574 437 97 1 2 438 28 463 0.0 728
MS.gene037272.t1 AT2G27190 70.070 431 128 1 2 432 29 458 0.0 649
MS.gene037272.t1 AT2G16430 81.306 337 63 0 102 438 7 343 0.0 597
MS.gene037272.t1 AT1G56360 63.719 441 152 4 2 437 21 458 0.0 589
MS.gene037272.t1 AT4G36350 63.182 440 155 4 2 437 22 458 0.0 584
MS.gene037272.t1 AT5G34850 57.870 432 178 3 2 432 23 451 0.0 531
MS.gene037272.t1 AT2G18130 57.143 441 162 6 2 439 25 441 0.0 515
MS.gene037272.t1 AT3G46120 48.284 437 140 10 2 432 25 381 1.04e-131 385
MS.gene037272.t1 AT1G52940 61.789 246 86 6 17 259 1 241 7.40e-106 314
MS.gene037272.t1 AT3G52820 43.182 396 197 11 33 427 47 415 3.21e-94 291
MS.gene037272.t1 AT3G20500 42.462 398 200 9 31 427 45 414 9.37e-93 287
MS.gene037272.t1 AT3G52810 41.582 392 201 10 33 423 51 415 1.68e-86 271
MS.gene037272.t1 AT3G52780 40.852 399 206 10 33 427 44 416 8.80e-86 269
MS.gene037272.t1 AT2G32770 32.265 499 232 15 14 423 49 530 1.56e-67 225
MS.gene037272.t1 AT3G07130 33.929 448 206 12 50 423 80 511 4.51e-67 223
MS.gene037272.t1 AT4G13700 35.904 376 179 12 50 381 80 437 4.27e-61 206
MS.gene037272.t1 AT3G07130 31.601 481 206 13 50 423 80 544 2.57e-60 206
MS.gene037272.t1 AT2G32770 33.251 403 179 11 73 401 41 427 3.76e-59 200
MS.gene037272.t1 AT3G52780 38.226 327 181 10 33 353 44 355 2.69e-56 190
MS.gene037272.t1 AT2G32770 29.659 499 216 16 14 423 49 501 9.03e-54 187
MS.gene037272.t1 AT4G13700 35.366 328 161 11 50 333 80 400 3.40e-49 173
MS.gene037272.t1 AT1G13900 25.325 462 257 17 20 417 132 569 2.46e-23 103
MS.gene037272.t1 AT2G03450 25.111 450 253 16 31 417 141 569 4.64e-20 93.6
MS.gene037272.t1 AT5G50400 25.281 356 225 14 92 417 237 581 8.97e-20 92.4
MS.gene037272.t1 AT5G50400 25.281 356 225 14 92 417 165 509 9.58e-20 92.0
MS.gene037272.t1 AT1G13750 25.549 364 214 14 92 417 239 583 1.47e-17 85.5
MS.gene037272.t1 AT4G24890 28.467 274 163 11 92 337 241 509 3.12e-17 84.7

Find 107 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTGGTTTCGCCAATTTC+TGG 0.125859 1.1:+79703705 None:intergenic
TCACACTACTATAAGGAATT+TGG 0.199886 1.1:-79704063 MS.gene037272:CDS
CACCTAACATTGTCATGATT+TGG 0.223594 1.1:+79703813 None:intergenic
ATTGATTTCGCCCCAGAAAT+TGG 0.247783 1.1:-79703717 MS.gene037272:CDS
GTACTTTGTGATGCTTTATA+AGG 0.272518 1.1:+79703651 None:intergenic
GGCACATCAGGACCAATTTC+AGG 0.281679 1.1:+79703969 None:intergenic
TTTATAACTCCTCCTGAAAT+TGG 0.285563 1.1:-79703981 MS.gene037272:CDS
CACACGTTCGGTTCTTTCAT+AGG 0.290239 1.1:+79703350 None:intergenic
TAGCAACAATCAACATTATA+TGG 0.299454 1.1:-79703454 MS.gene037272:CDS
CACAAAGTACTTCACCCTTT+TGG 0.304317 1.1:-79703638 MS.gene037272:CDS
TTATTCATCACACTACTATA+AGG 0.305033 1.1:-79704070 MS.gene037272:CDS
GTGATGCTTTATAAGGAGTA+TGG 0.325433 1.1:+79703658 None:intergenic
GTTTCTGTCCTGTTAACTTT+AGG 0.327863 1.1:+79703516 None:intergenic
TGGCTCATCAACCATGGATA+TGG 0.337293 1.1:-79703758 MS.gene037272:CDS
CTGGGGCGAAATCAATTTCA+TGG 0.339164 1.1:+79703724 None:intergenic
GGAACACAACAAGACAGTTT+TGG 0.351168 1.1:-79704004 MS.gene037272:CDS
AGATTCTTCAATTACTCATC+TGG 0.355881 1.1:-79704095 MS.gene037272:CDS
GTTTGGTTTCGCCAATTTCT+GGG 0.356914 1.1:+79703706 None:intergenic
TACTATTATGAGGTTGGACT+TGG 0.361764 1.1:-79704026 MS.gene037272:CDS
ACCTAACATTGTCATGATTT+GGG 0.368249 1.1:+79703814 None:intergenic
GGTCGAACGCAGTGCGCTAC+TGG 0.369778 1.1:-79704172 MS.gene037272:CDS
ACAATGTTAGGTGGGATACT+TGG 0.374862 1.1:-79703803 MS.gene037272:CDS
CGAATAAGGTTTGAATGGTT+TGG 0.378529 1.1:+79703689 None:intergenic
GGGAAAACAGTGTTGTTTGT+TGG 0.380568 1.1:-79703861 MS.gene037272:CDS
GTATGGTATCGGTGCGAATA+AGG 0.387101 1.1:+79703675 None:intergenic
AGGAGCTACCTAAAGTTAAC+AGG 0.390499 1.1:-79703524 MS.gene037272:CDS
TAGAAATCAAGATGGTTATT+CGG 0.395276 1.1:-79703112 MS.gene037272:CDS
TGCAATATTCGACACACGTT+CGG 0.401173 1.1:+79703338 None:intergenic
TTTGGTCTCATAGGAGATCT+TGG 0.404619 1.1:-79703939 MS.gene037272:CDS
CCAAATGTGTATGGCACATC+AGG 0.405903 1.1:+79703957 None:intergenic
GCATTCAGAGAGGCTAGCTT+TGG 0.414506 1.1:-79703186 MS.gene037272:CDS
TGGTTATAATGCTCCCCAAC+AGG 0.417531 1.1:-79704264 MS.gene037272:CDS
CCATACACATTTGGTCTCAT+AGG 0.418182 1.1:-79703948 MS.gene037272:CDS
TCCCAAATCATGACAATGTT+AGG 0.419243 1.1:-79703815 MS.gene037272:CDS
TTCAGCTCACATCATTGTCT+TGG 0.421163 1.1:-79703598 MS.gene037272:CDS
CCTGATGTGCCATACACATT+TGG 0.422920 1.1:-79703957 MS.gene037272:CDS
CGGTGCGAATAAGGTTTGAA+TGG 0.426529 1.1:+79703684 None:intergenic
TCTCCAATGGTTATGTATAC+AGG 0.430699 1.1:+79703267 None:intergenic
TTACACAAGGTGATCTTGTT+GGG 0.430973 1.1:-79704235 MS.gene037272:CDS
TGAGCGGTGGAATCATCAAC+TGG 0.432170 1.1:+79703048 None:intergenic
TTGGCCTCGTATTCAGCATA+TGG 0.441264 1.1:-79703579 MS.gene037272:CDS
CAATGTTAGGTGGGATACTT+GGG 0.445086 1.1:-79703802 MS.gene037272:CDS
ATTACACAAGGTGATCTTGT+TGG 0.449022 1.1:-79704236 MS.gene037272:CDS
TGGCTGTGGTTCTGTCATGT+TGG 0.470647 1.1:+79703218 None:intergenic
CGGTTGAGGCTGATTCCCAT+TGG 0.478638 1.1:-79703092 MS.gene037272:CDS
CTTGGGGAAGGTTTGTAGAA+AGG 0.482123 1.1:-79703785 MS.gene037272:CDS
ACAGTACCAATGGCTTGAAC+AGG 0.482376 1.1:-79703544 MS.gene037272:CDS
ACTAAATACTATTATGAGGT+TGG 0.489189 1.1:-79704032 MS.gene037272:CDS
GGAGATGGAGGGAACCTTGG+AGG 0.490799 1.1:-79703249 MS.gene037272:CDS
GTAGCTCCTGTTCAAGCCAT+TGG 0.495291 1.1:+79703538 None:intergenic
TTGTGTAATATGAACCTGTT+GGG 0.497585 1.1:+79704250 None:intergenic
CCTATGAGACCAAATGTGTA+TGG 0.500434 1.1:+79703948 None:intergenic
AAGGTTGATGTTGTGTATGC+TGG 0.513119 1.1:-79703384 MS.gene037272:CDS
TTAACAGGACAGAAACTCCT+TGG 0.513520 1.1:-79703509 MS.gene037272:CDS
TCAAGATGGTTATTCGGTTG+AGG 0.514507 1.1:-79703106 MS.gene037272:CDS
GCCATGGTTTGTTAAGTACA+AGG 0.515158 1.1:-79703403 MS.gene037272:CDS
ATTGGAGATGGAGGGAACCT+TGG 0.515906 1.1:-79703252 MS.gene037272:CDS
TAGCGCACTGCGTTCGACCC+TGG 0.519503 1.1:+79704176 None:intergenic
GAACACATGCTCACTATAGC+TGG 0.521332 1.1:-79703137 MS.gene037272:CDS
TGGGTGACCGAGGATGAACC+AGG 0.523413 1.1:-79704194 MS.gene037272:CDS
AACAATCAACATTATATGGA+AGG 0.525860 1.1:-79703450 MS.gene037272:CDS
GTTCGACCCTGGTTCATCCT+CGG 0.543679 1.1:+79704187 None:intergenic
ATTGCATATAATGTTGTGAA+TGG 0.545809 1.1:-79703321 MS.gene037272:CDS
TACATAACCATTGGAGATGG+AGG 0.550025 1.1:-79703261 MS.gene037272:CDS
CAACACTAAATACTATTATG+AGG 0.552300 1.1:-79704036 MS.gene037272:CDS
GCTCCTGTATACATAACCAT+TGG 0.553714 1.1:-79703270 MS.gene037272:CDS
ACAATCAACATTATATGGAA+GGG 0.554284 1.1:-79703449 MS.gene037272:CDS
TCTCTGAATGCTGAGTACTC+TGG 0.561355 1.1:+79703198 None:intergenic
AATGCTGAGTACTCTGGCTG+TGG 0.569296 1.1:+79703204 None:intergenic
CTTTATAAGGAGTATGGTAT+CGG 0.573117 1.1:+79703664 None:intergenic
TTTCCTACAGTCCATATCCA+TGG 0.573550 1.1:+79703747 None:intergenic
CAAATCATGACAATGTTAGG+TGG 0.575920 1.1:-79703812 MS.gene037272:CDS
TGTTGGTTTCTAAGCCTCCA+AGG 0.576998 1.1:+79703235 None:intergenic
CAATCAACATTATATGGAAG+GGG 0.577345 1.1:-79703448 MS.gene037272:CDS
CAACCATGGATATGGACTGT+AGG 0.580717 1.1:-79703750 MS.gene037272:CDS
AATATACACCACAGTACCAA+TGG 0.587307 1.1:-79703554 MS.gene037272:CDS
TGTTCAAGCCATTGGTACTG+TGG 0.587686 1.1:+79703546 None:intergenic
GTATACATAACCATTGGAGA+TGG 0.590351 1.1:-79703264 MS.gene037272:CDS
GATCGTATCGTGGGTGACCG+AGG 0.591550 1.1:-79704204 MS.gene037272:CDS
TTAGGTGGGATACTTGGGGA+AGG 0.593341 1.1:-79703797 MS.gene037272:CDS
AAGGTTCCCTCCATCTCCAA+TGG 0.594309 1.1:+79703254 None:intergenic
AAATCATGACAATGTTAGGT+GGG 0.598863 1.1:-79703811 MS.gene037272:CDS
GGAAAGCAGTGATCGTATCG+TGG 0.602783 1.1:-79704214 MS.gene037272:CDS
ACTATTATGAGGTTGGACTT+GGG 0.609032 1.1:-79704025 MS.gene037272:CDS
TTTGGTTTCGCCAATTTCTG+GGG 0.609945 1.1:+79703707 None:intergenic
TTTGTTAGGAATGTTCAGAA+GGG 0.611055 1.1:-79704329 MS.gene037272:CDS
ACCTTGTACTTAACAAACCA+TGG 0.616531 1.1:+79703402 None:intergenic
TGAGAGTAATGTATGAGCCA+TGG 0.618209 1.1:-79703419 MS.gene037272:CDS
GAAAGCAGTGATCGTATCGT+GGG 0.619977 1.1:-79704213 MS.gene037272:CDS
AGCTGGCATAGAAATCAAGA+TGG 0.628581 1.1:-79703120 MS.gene037272:CDS
GGAGCGTGGCTCATCAACCA+TGG 0.634638 1.1:-79703764 MS.gene037272:CDS
TCAATGGAAAACATGAGCGG+TGG 0.642932 1.1:+79703035 None:intergenic
TGCATTAGAACAATCAACCA+AGG 0.650420 1.1:+79703492 None:intergenic
CTTGTGTAATATGAACCTGT+TGG 0.651645 1.1:+79704249 None:intergenic
ACATAACCATTGGAGATGGA+GGG 0.652593 1.1:-79703260 MS.gene037272:CDS
TGGGGAGCATTATAACCAGA+AGG 0.658702 1.1:+79704269 None:intergenic
CAACAGGTTCATATTACACA+AGG 0.659532 1.1:-79704248 MS.gene037272:CDS
TTGTTCTAATGCATTCACCA+TGG 0.660660 1.1:-79703482 MS.gene037272:CDS
GAGCGGTGGAATCATCAACT+GGG 0.687131 1.1:+79703049 None:intergenic
ACATCAGGACCAATTTCAGG+AGG 0.690189 1.1:+79703972 None:intergenic
TGATTGTTGCTATTATACCA+TGG 0.695794 1.1:+79703465 None:intergenic
AAGGTTTGTAGAAAGGAGCG+TGG 0.697817 1.1:-79703778 MS.gene037272:CDS
GGGTGACCGAGGATGAACCA+GGG 0.713113 1.1:-79704193 MS.gene037272:CDS
AGAGTACTCAGCATTCAGAG+AGG 0.715627 1.1:-79703196 MS.gene037272:CDS
GTATCAATGGAAAACATGAG+CGG 0.720779 1.1:+79703032 None:intergenic
AATGTTAGGTGGGATACTTG+GGG 0.732363 1.1:-79703801 MS.gene037272:CDS
TGTGTAATATGAACCTGTTG+GGG 0.733638 1.1:+79704251 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAATCTGTTGAAAAACCAA+TGG + chr1.1:79704390-79704409 None:intergenic 25.0%
! AAACAAAAAAAGCTAGCTAA+AGG - chr1.1:79703329-79703348 MS.gene037272:CDS 25.0%
! AAATCTGTTGAAAAACCAAT+GGG + chr1.1:79704389-79704408 None:intergenic 25.0%
! AACAAAAAAAGCTAGCTAAA+GGG - chr1.1:79703330-79703349 MS.gene037272:CDS 25.0%
! AACAATCAACATTATATGGA+AGG - chr1.1:79704013-79704032 MS.gene037272:CDS 25.0%
! ACAATCAACATTATATGGAA+GGG - chr1.1:79704014-79704033 MS.gene037272:CDS 25.0%
! ACTAAATACTATTATGAGGT+TGG - chr1.1:79703431-79703450 MS.gene037272:CDS 25.0%
! ATGAATTGAATCCCAAAAAA+GGG - chr1.1:79703582-79703601 MS.gene037272:CDS 25.0%
! ATTGCATATAATGTTGTGAA+TGG - chr1.1:79704142-79704161 MS.gene037272:CDS 25.0%
! CAACACTAAATACTATTATG+AGG - chr1.1:79703427-79703446 MS.gene037272:CDS 25.0%
! TAGAAATCAAGATGGTTATT+CGG - chr1.1:79704351-79704370 MS.gene037272:intron 25.0%
! TAGCAACAATCAACATTATA+TGG - chr1.1:79704009-79704028 MS.gene037272:CDS 25.0%
! TATGAATTGAATCCCAAAAA+AGG - chr1.1:79703581-79703600 MS.gene037272:CDS 25.0%
! TCTGTTCATTATGTCAAAAA+TGG + chr1.1:79704308-79704327 None:intergenic 25.0%
! TTATTCATCACACTACTATA+AGG - chr1.1:79703393-79703412 MS.gene037272:CDS 25.0%
!! CTTTTGATAGAATACCAAAA+GGG + chr1.1:79703842-79703861 None:intergenic 25.0%
!! TCTTTTGATAGAATACCAAA+AGG + chr1.1:79703843-79703862 None:intergenic 25.0%
!!! ATTGGTTTTTCAACAGATTT+TGG - chr1.1:79704389-79704408 MS.gene037272:intron 25.0%
!!! TTTAGCTAGCTTTTTTTGTT+TGG + chr1.1:79703330-79703349 None:intergenic 25.0%
AAATCATGACAATGTTAGGT+GGG - chr1.1:79703652-79703671 MS.gene037272:CDS 30.0%
ACCTAACATTGTCATGATTT+GGG + chr1.1:79703652-79703671 None:intergenic 30.0%
AGATTCTTCAATTACTCATC+TGG - chr1.1:79703368-79703387 MS.gene037272:CDS 30.0%
CAATCAACATTATATGGAAG+GGG - chr1.1:79704015-79704034 MS.gene037272:CDS 30.0%
GTACTTTGTGATGCTTTATA+AGG + chr1.1:79703815-79703834 None:intergenic 30.0%
TCACACTACTATAAGGAATT+TGG - chr1.1:79703400-79703419 MS.gene037272:CDS 30.0%
TTGTGTAATATGAACCTGTT+GGG + chr1.1:79703216-79703235 None:intergenic 30.0%
TTTATAACTCCTCCTGAAAT+TGG - chr1.1:79703482-79703501 MS.gene037272:CDS 30.0%
TTTGTTAGGAATGTTCAGAA+GGG - chr1.1:79703134-79703153 MS.gene037272:CDS 30.0%
! AACACTGTTTTCCCTTTTTT+GGG + chr1.1:79703596-79703615 None:intergenic 30.0%
! CTTTATAAGGAGTATGGTAT+CGG + chr1.1:79703802-79703821 None:intergenic 30.0%
! TGATTGTTGCTATTATACCA+TGG + chr1.1:79704001-79704020 None:intergenic 30.0%
! TTTTGTTAGGAATGTTCAGA+AGG - chr1.1:79703133-79703152 MS.gene037272:CDS 30.0%
!! AATTTGGTGTTTGTGTGTAA+TGG - chr1.1:79703095-79703114 MS.gene037272:CDS 30.0%
!!! ACTAGCTCTAGTTTTGAATT+TGG - chr1.1:79703079-79703098 MS.gene037272:CDS 30.0%
AATATACACCACAGTACCAA+TGG - chr1.1:79703909-79703928 MS.gene037272:CDS 35.0%
ACCTTGTACTTAACAAACCA+TGG + chr1.1:79704064-79704083 None:intergenic 35.0%
ACTATTATGAGGTTGGACTT+GGG - chr1.1:79703438-79703457 MS.gene037272:CDS 35.0%
ATTACACAAGGTGATCTTGT+TGG - chr1.1:79703227-79703246 MS.gene037272:CDS 35.0%
CAAATCATGACAATGTTAGG+TGG - chr1.1:79703651-79703670 MS.gene037272:CDS 35.0%
CAACAGGTTCATATTACACA+AGG - chr1.1:79703215-79703234 MS.gene037272:CDS 35.0%
CACCTAACATTGTCATGATT+TGG + chr1.1:79703653-79703672 None:intergenic 35.0%
CGAATAAGGTTTGAATGGTT+TGG + chr1.1:79703777-79703796 None:intergenic 35.0%
CTTGTGTAATATGAACCTGT+TGG + chr1.1:79703217-79703236 None:intergenic 35.0%
GTATACATAACCATTGGAGA+TGG - chr1.1:79704199-79704218 MS.gene037272:CDS 35.0%
GTGATGCTTTATAAGGAGTA+TGG + chr1.1:79703808-79703827 None:intergenic 35.0%
GTTTCTGTCCTGTTAACTTT+AGG + chr1.1:79703950-79703969 None:intergenic 35.0%
TACTATTATGAGGTTGGACT+TGG - chr1.1:79703437-79703456 MS.gene037272:CDS 35.0%
TCCCAAATCATGACAATGTT+AGG - chr1.1:79703648-79703667 MS.gene037272:CDS 35.0%
TCTCCAATGGTTATGTATAC+AGG + chr1.1:79704199-79704218 None:intergenic 35.0%
TGCATTAGAACAATCAACCA+AGG + chr1.1:79703974-79703993 None:intergenic 35.0%
TGTGTAATATGAACCTGTTG+GGG + chr1.1:79703215-79703234 None:intergenic 35.0%
TTACACAAGGTGATCTTGTT+GGG - chr1.1:79703228-79703247 MS.gene037272:CDS 35.0%
TTGTTCTAATGCATTCACCA+TGG - chr1.1:79703981-79704000 MS.gene037272:CDS 35.0%
! CAACACTGTTTTCCCTTTTT+TGG + chr1.1:79703597-79703616 None:intergenic 35.0%
! GGAGCTGATTGATCTTTTAT+AGG + chr1.1:79704178-79704197 None:intergenic 35.0%
! TTTTCCATATGCTGAATACG+AGG + chr1.1:79703891-79703910 None:intergenic 35.0%
AATGTTAGGTGGGATACTTG+GGG - chr1.1:79703662-79703681 MS.gene037272:CDS 40.0%
ACAATGTTAGGTGGGATACT+TGG - chr1.1:79703660-79703679 MS.gene037272:CDS 40.0%
ACATAACCATTGGAGATGGA+GGG - chr1.1:79704203-79704222 MS.gene037272:CDS 40.0%
AGCTGGCATAGAAATCAAGA+TGG - chr1.1:79704343-79704362 MS.gene037272:CDS 40.0%
AGGAGCTACCTAAAGTTAAC+AGG - chr1.1:79703939-79703958 MS.gene037272:CDS 40.0%
CAATGTTAGGTGGGATACTT+GGG - chr1.1:79703661-79703680 MS.gene037272:CDS 40.0%
CCATACACATTTGGTCTCAT+AGG - chr1.1:79703515-79703534 MS.gene037272:CDS 40.0%
CCTATGAGACCAAATGTGTA+TGG + chr1.1:79703518-79703537 None:intergenic 40.0%
GCTCCTGTATACATAACCAT+TGG - chr1.1:79704193-79704212 MS.gene037272:CDS 40.0%
TACATAACCATTGGAGATGG+AGG - chr1.1:79704202-79704221 MS.gene037272:CDS 40.0%
TCAAGATGGTTATTCGGTTG+AGG - chr1.1:79704357-79704376 MS.gene037272:intron 40.0%
TGAGAGTAATGTATGAGCCA+TGG - chr1.1:79704044-79704063 MS.gene037272:CDS 40.0%
TGCAATATTCGACACACGTT+CGG + chr1.1:79704128-79704147 None:intergenic 40.0%
TTAACAGGACAGAAACTCCT+TGG - chr1.1:79703954-79703973 MS.gene037272:CDS 40.0%
TTCAGCTCACATCATTGTCT+TGG - chr1.1:79703865-79703884 MS.gene037272:CDS 40.0%
TTTCCTACAGTCCATATCCA+TGG + chr1.1:79703719-79703738 None:intergenic 40.0%
TTTGGTCTCATAGGAGATCT+TGG - chr1.1:79703524-79703543 MS.gene037272:CDS 40.0%
! ATTGATTTCGCCCCAGAAAT+TGG - chr1.1:79703746-79703765 MS.gene037272:CDS 40.0%
! GCACAACTAGTGCTTTTGTT+AGG - chr1.1:79703120-79703139 MS.gene037272:CDS 40.0%
! GGAACACAACAAGACAGTTT+TGG - chr1.1:79703459-79703478 MS.gene037272:CDS 40.0%
! GTTTGGTTTCGCCAATTTCT+GGG + chr1.1:79703760-79703779 None:intergenic 40.0%
! TTGGTGTTTGTGTGTAATGG+AGG - chr1.1:79703098-79703117 MS.gene037272:CDS 40.0%
! TTTGGTTTCGCCAATTTCTG+GGG + chr1.1:79703759-79703778 None:intergenic 40.0%
!! AAGGTTGATGTTGTGTATGC+TGG - chr1.1:79704079-79704098 MS.gene037272:CDS 40.0%
!! CACAAAGTACTTCACCCTTT+TGG - chr1.1:79703825-79703844 MS.gene037272:CDS 40.0%
!! GCCATGGTTTGTTAAGTACA+AGG - chr1.1:79704060-79704079 MS.gene037272:CDS 40.0%
!! GGGAAAACAGTGTTGTTTGT+TGG - chr1.1:79703602-79703621 MS.gene037272:CDS 40.0%
!!! GATGTTTTTGCTGTTCCTTC+TGG - chr1.1:79703179-79703198 MS.gene037272:CDS 40.0%
AAGGTTTGTAGAAAGGAGCG+TGG - chr1.1:79703685-79703704 MS.gene037272:CDS 45.0%
ACAGTACCAATGGCTTGAAC+AGG - chr1.1:79703919-79703938 MS.gene037272:CDS 45.0%
ACATCAGGACCAATTTCAGG+AGG + chr1.1:79703494-79703513 None:intergenic 45.0%
CACACGTTCGGTTCTTTCAT+AGG + chr1.1:79704116-79704135 None:intergenic 45.0%
CCAAATGTGTATGGCACATC+AGG + chr1.1:79703509-79703528 None:intergenic 45.0%
CCTGATGTGCCATACACATT+TGG - chr1.1:79703506-79703525 MS.gene037272:CDS 45.0%
CGGTGCGAATAAGGTTTGAA+TGG + chr1.1:79703782-79703801 None:intergenic 45.0%
CTGGGGCGAAATCAATTTCA+TGG + chr1.1:79703742-79703761 None:intergenic 45.0%
CTTGGGGAAGGTTTGTAGAA+AGG - chr1.1:79703678-79703697 MS.gene037272:CDS 45.0%
GAAAGCAGTGATCGTATCGT+GGG - chr1.1:79703250-79703269 MS.gene037272:CDS 45.0%
GAACACATGCTCACTATAGC+TGG - chr1.1:79704326-79704345 MS.gene037272:CDS 45.0%
TCAATGGAAAACATGAGCGG+TGG + chr1.1:79704431-79704450 None:intergenic 45.0%
TCTCTGAATGCTGAGTACTC+TGG + chr1.1:79704268-79704287 None:intergenic 45.0%
TGGCTCATCAACCATGGATA+TGG - chr1.1:79703705-79703724 MS.gene037272:CDS 45.0%
TGGTTATAATGCTCCCCAAC+AGG - chr1.1:79703199-79703218 MS.gene037272:CDS 45.0%
TGTTCAAGCCATTGGTACTG+TGG + chr1.1:79703920-79703939 None:intergenic 45.0%
TTGGCCTCGTATTCAGCATA+TGG - chr1.1:79703884-79703903 MS.gene037272:CDS 45.0%
! AGAGTACTCAGCATTCAGAG+AGG - chr1.1:79704267-79704286 MS.gene037272:CDS 45.0%
! CAACCATGGATATGGACTGT+AGG - chr1.1:79703713-79703732 MS.gene037272:CDS 45.0%
! GGTTTGGTTTCGCCAATTTC+TGG + chr1.1:79703761-79703780 None:intergenic 45.0%
!! GTATGGTATCGGTGCGAATA+AGG + chr1.1:79703791-79703810 None:intergenic 45.0%
!! TGGGGAGCATTATAACCAGA+AGG + chr1.1:79703197-79703216 None:intergenic 45.0%
!! TGTTGGTTTCTAAGCCTCCA+AGG + chr1.1:79704231-79704250 None:intergenic 45.0%
AAGGTTCCCTCCATCTCCAA+TGG + chr1.1:79704212-79704231 None:intergenic 50.0%
AATGCTGAGTACTCTGGCTG+TGG + chr1.1:79704262-79704281 None:intergenic 50.0%
ATTGGAGATGGAGGGAACCT+TGG - chr1.1:79704211-79704230 MS.gene037272:CDS 50.0%
GAGCGGTGGAATCATCAACT+GGG + chr1.1:79704417-79704436 None:intergenic 50.0%
GGAAAGCAGTGATCGTATCG+TGG - chr1.1:79703249-79703268 MS.gene037272:CDS 50.0%
GGCACATCAGGACCAATTTC+AGG + chr1.1:79703497-79703516 None:intergenic 50.0%
GTAGCTCCTGTTCAAGCCAT+TGG + chr1.1:79703928-79703947 None:intergenic 50.0%
TGAGCGGTGGAATCATCAAC+TGG + chr1.1:79704418-79704437 None:intergenic 50.0%
TTAGGTGGGATACTTGGGGA+AGG - chr1.1:79703666-79703685 MS.gene037272:CDS 50.0%
! TGGCTGTGGTTCTGTCATGT+TGG + chr1.1:79704248-79704267 None:intergenic 50.0%
!! GCATTCAGAGAGGCTAGCTT+TGG - chr1.1:79704277-79704296 MS.gene037272:CDS 50.0%
GTTCGACCCTGGTTCATCCT+CGG + chr1.1:79703279-79703298 None:intergenic 55.0%
! CGGTTGAGGCTGATTCCCAT+TGG - chr1.1:79704371-79704390 MS.gene037272:intron 55.0%
GATCGTATCGTGGGTGACCG+AGG - chr1.1:79703259-79703278 MS.gene037272:CDS 60.0%
GGAGATGGAGGGAACCTTGG+AGG - chr1.1:79704214-79704233 MS.gene037272:CDS 60.0%
GGAGCGTGGCTCATCAACCA+TGG - chr1.1:79703699-79703718 MS.gene037272:CDS 60.0%
GGGTGACCGAGGATGAACCA+GGG - chr1.1:79703270-79703289 MS.gene037272:CDS 60.0%
TGGGTGACCGAGGATGAACC+AGG - chr1.1:79703269-79703288 MS.gene037272:CDS 60.0%
GGTCGAACGCAGTGCGCTAC+TGG - chr1.1:79703291-79703310 MS.gene037272:CDS 65.0%
TAGCGCACTGCGTTCGACCC+TGG + chr1.1:79703290-79703309 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 79703035 79704450 79703035 ID=MS.gene037272
chr1.1 mRNA 79703035 79704450 79703035 ID=MS.gene037272.t1;Parent=MS.gene037272
chr1.1 exon 79704447 79704450 79704447 ID=MS.gene037272.t1.exon1;Parent=MS.gene037272.t1
chr1.1 CDS 79704447 79704450 79704447 ID=cds.MS.gene037272.t1;Parent=MS.gene037272.t1
chr1.1 exon 79703035 79704365 79703035 ID=MS.gene037272.t1.exon2;Parent=MS.gene037272.t1
chr1.1 CDS 79703035 79704365 79703035 ID=cds.MS.gene037272.t1;Parent=MS.gene037272.t1
Gene Sequence

>MS.gene037272

ATGGGTATTTCTCAAGGATTATCAATTACTAGTTTTTTATTATCACTAGCTCTAGTTTTGAATTTGGTGTTTGTGTGTAATGGAGGCACAACTAGTGCTTTTGTTAGGAATGTTCAGAAGGGCTTTAATATGTCACTTGATAGTGATGTTTTTGCTGTTCCTTCTGGTTATAATGCTCCCCAACAGGTTCATATTACACAAGGTGATCTTGTTGGGAAAGCAGTGATCGTATCGTGGGTGACCGAGGATGAACCAGGGTCGAACGCAGTGCGCTACTGGAGTACTGACAACACCAAACAAAAAAAGCTAGCTAAAGGGAAAATTGTTACTTATAGATTCTTCAATTACTCATCTGGTTTTATTCATCACACTACTATAAGGAATTTGGAGTACAACACTAAATACTATTATGAGGTTGGACTTGGGAACACAACAAGACAGTTTTGGTTTATAACTCCTCCTGAAATTGGTCCTGATGTGCCATACACATTTGGTCTCATAGGAGATCTTGGTCAGAGCTTTGATTCAAACAGAACACTTTCTCACTATGAATTGAATCCCAAAAAAGGGAAAACAGTGTTGTTTGTTGGAGATCTCTCTTATTCAGATAACTTCCCAAATCATGACAATGTTAGGTGGGATACTTGGGGAAGGTTTGTAGAAAGGAGCGTGGCTCATCAACCATGGATATGGACTGTAGGAAACCATGAAATTGATTTCGCCCCAGAAATTGGCGAAACCAAACCATTCAAACCTTATTCGCACCGATACCATACTCCTTATAAAGCATCACAAAGTACTTCACCCTTTTGGTATTCTATCAAAAGAGCTTCAGCTCACATCATTGTCTTGGCCTCGTATTCAGCATATGGAAAATATACACCACAGTACCAATGGCTTGAACAGGAGCTACCTAAAGTTAACAGGACAGAAACTCCTTGGTTGATTGTTCTAATGCATTCACCATGGTATAATAGCAACAATCAACATTATATGGAAGGGGAGACAATGAGAGTAATGTATGAGCCATGGTTTGTTAAGTACAAGGTTGATGTTGTGTATGCTGGACATGTGCATGCCTATGAAAGAACCGAACGTGTGTCGAATATTGCATATAATGTTGTGAATGGTATTTGCACTCCTATAAAAGATCAATCAGCTCCTGTATACATAACCATTGGAGATGGAGGGAACCTTGGAGGCTTAGAAACCAACATGACAGAACCACAGCCAGAGTACTCAGCATTCAGAGAGGCTAGCTTTGGACATGCCATTTTTGACATAATGAACAGAACACATGCTCACTATAGCTGGCATAGAAATCAAGATGGTTATTCGGTTGAGGCTGATTCCCATTGGTTTTTCAACAGATTTTGGCACCCAGTTGATGATTCCACCGCTCATGTTTTCCATTGA
Protein sequence

>MS.gene037272.t1

MGTTSAFVRNVQKGFNMSLDSDVFAVPSGYNAPQQVHITQGDLVGKAVIVSWVTEDEPGSNAVRYWSTDNTKQKKLAKGKIVTYRFFNYSSGFIHHTTIRNLEYNTKYYYEVGLGNTTRQFWFITPPEIGPDVPYTFGLIGDLGQSFDSNRTLSHYELNPKKGKTVLFVGDLSYSDNFPNHDNVRWDTWGRFVERSVAHQPWIWTVGNHEIDFAPEIGETKPFKPYSHRYHTPYKASQSTSPFWYSIKRASAHIIVLASYSAYGKYTPQYQWLEQELPKVNRTETPWLIVLMHSPWYNSNNQHYMEGETMRVMYEPWFVKYKVDVVYAGHVHAYERTERVSNIAYNVVNGICTPIKDQSAPVYITIGDGGNLGGLETNMTEPQPEYSAFREASFGHAIFDIMNRTHAHYSWHRNQDGYSVEADSHWFFNRFWHPVDDSTAHVFH