Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038384.t1 | XP_003617477.2 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 3.50E-79 | 305.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038384.t1 | Q9PV94 | 60.1 | 148 | 55 | 2 | 1 | 147 | 1 | 145 | 5.4e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038384.t1 | G7K3F8 | 98.1 | 157 | 3 | 0 | 1 | 157 | 1 | 157 | 2.5e-79 | 305.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038384 | MS.gene067039 | PPI |
| MS.gene038384 | MS.gene75567 | PPI |
| MS.gene038384 | MS.gene79126 | PPI |
| MS.gene038384 | MS.gene045227 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038384.t1 | MTR_5g092010 | 96.797 | 281 | 4 | 1 | 1 | 281 | 1 | 276 | 4.78e-180 | 496 |
| MS.gene038384.t1 | MTR_8g080090 | 94.253 | 174 | 5 | 2 | 1 | 173 | 1 | 170 | 9.40e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038384.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene038384.t1 | AT5G44500 | 84.868 | 152 | 23 | 0 | 1 | 152 | 1 | 152 | 4.84e-90 | 268 |
| MS.gene038384.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene038384.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene038384.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene038384.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
| MS.gene038384.t1 | AT4G20440 | 88.816 | 152 | 16 | 1 | 1 | 152 | 1 | 151 | 1.06e-82 | 249 |
Find 146 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATGCCGCCGGGGCAATT+TGG | 0.120570 | 5.4:-73018137 | MS.gene038384:CDS |
| GGAAGTGGTGTTCCGGTTTA+TGG | 0.187174 | 5.4:-73017951 | MS.gene038384:CDS |
| CACTGTTGCTGCTGTTGATT+TGG | 0.210852 | 5.4:+73017891 | None:intergenic |
| GTTGATGTATTGAAGCATTT+TGG | 0.240715 | 5.4:+73018694 | None:intergenic |
| CTATGCCGCCGGGGCAATTT+GGG | 0.264839 | 5.4:-73018136 | MS.gene038384:CDS |
| TGCTGTTGATTTGGAGCATT+TGG | 0.292429 | 5.4:+73017900 | None:intergenic |
| AGCCATTGCAGCAGCATTTA+CGG | 0.293446 | 5.4:+73018421 | None:intergenic |
| GGTATGCCACCTCCTCAGTA+TGG | 0.303881 | 5.4:-73018083 | MS.gene038384:CDS |
| CAAGCTCAACCTGGTCTTGC+TGG | 0.320924 | 5.4:-73018344 | MS.gene038384:CDS |
| GCTTTCGAACGAGACTCTTC+AGG | 0.340925 | 5.4:+73018443 | None:intergenic |
| TCCTCCTGGAAGTGGTGTTC+CGG | 0.346552 | 5.4:-73017958 | MS.gene038384:CDS |
| ACTCGGTTTGGTTCTACTTC+GGG | 0.350273 | 5.4:-73018507 | MS.gene038384:CDS |
| CCAGGTTGAGCTTGAATAAC+CGG | 0.357485 | 5.4:+73018353 | None:intergenic |
| GGTGGTCCTCCACCGCAATT+TGG | 0.359308 | 5.4:-73018104 | MS.gene038384:CDS |
| TTGACCAGGTGGACCTTGAC+CGG | 0.368468 | 5.4:+73018220 | None:intergenic |
| CCTCCTGGTCAGATGGTTAG+AGG | 0.388518 | 5.4:-73018038 | MS.gene038384:CDS |
| CCTGGTATGCCTCCTCCTCC+TGG | 0.388630 | 5.4:-73017972 | MS.gene038384:CDS |
| CGAGGCGGAGGCTGCATTCC+AGG | 0.396888 | 5.4:+73017996 | None:intergenic |
| TGTCCAGGATGTCCAGGATA+TGG | 0.405313 | 5.4:+73018194 | None:intergenic |
| CGAGTGTGCGGCGGTCTTCA+CGG | 0.406911 | 5.4:+73018525 | None:intergenic |
| TCAGTATGGGCAGAGACCTA+TGG | 0.417999 | 5.4:-73018069 | MS.gene038384:CDS |
| TGACCGGGCGGACGCATAAC+CGG | 0.420979 | 5.4:+73018236 | None:intergenic |
| GCAATGGCTGGTCCTGGAAT+TGG | 0.421320 | 5.4:-73018407 | MS.gene038384:CDS |
| CGACGAGTTGACGACCGTCT+TGG | 0.425249 | 5.4:+73018651 | None:intergenic |
| CACTCGGTTTGGTTCTACTT+CGG | 0.427788 | 5.4:-73018508 | MS.gene038384:CDS |
| ATTGGTCGTGCTGCGGGTAG+AGG | 0.433842 | 5.4:-73018389 | MS.gene038384:CDS |
| CCCGCAGCACGACCAATTCC+AGG | 0.437550 | 5.4:+73018395 | None:intergenic |
| ATGCCATATCCTGGACATCC+TGG | 0.445798 | 5.4:-73018197 | MS.gene038384:CDS |
| CCAAATTGCCCCGGCGGCAT+AGG | 0.449138 | 5.4:+73018137 | None:intergenic |
| GTTATGCGTCCGCCCGGTCA+AGG | 0.449504 | 5.4:-73018233 | MS.gene038384:CDS |
| TCAACTCGTCGGAAAATTCA+TGG | 0.450814 | 5.4:-73018639 | MS.gene038384:CDS |
| CCCACCTCCTCCTGGTCAGA+TGG | 0.451634 | 5.4:-73018045 | MS.gene038384:CDS |
| GCTGCTGCAATGGCTGGTCC+TGG | 0.451669 | 5.4:-73018413 | MS.gene038384:CDS |
| CGCCACATGAATCTTGTTCT+CGG | 0.452233 | 5.4:-73018608 | MS.gene038384:CDS |
| GGAGGAGGCATGCCAGGCCG+AGG | 0.453758 | 5.4:+73017924 | None:intergenic |
| CCTCCTGCTCCTCCTCGTCC+TGG | 0.453758 | 5.4:-73018014 | MS.gene038384:CDS |
| AGACCGCCGCACACTCGGTT+TGG | 0.455844 | 5.4:-73018519 | MS.gene038384:CDS |
| TTTGGTGGAGGAGGCATGCC+AGG | 0.462102 | 5.4:+73017918 | None:intergenic |
| GTTGTTTCGATGACAGTTGA+AGG | 0.465323 | 5.4:-73018476 | MS.gene038384:CDS |
| GGCCGAGGTGGACCATAAAC+CGG | 0.466333 | 5.4:+73017939 | None:intergenic |
| CCACCGCCTCCTATGCCGCC+GGG | 0.471646 | 5.4:-73018146 | MS.gene038384:CDS |
| ACCATCTGACCAGGAGGAGG+TGG | 0.471852 | 5.4:+73018044 | None:intergenic |
| CGTCCGCCTGTATCGTATCC+TGG | 0.473335 | 5.4:-73018266 | MS.gene038384:CDS |
| CCTGGAATTGGTCGTGCTGC+GGG | 0.477710 | 5.4:-73018395 | MS.gene038384:CDS |
| ATGCAGCCTCCGCCTCGTCC+TGG | 0.478953 | 5.4:-73017990 | MS.gene038384:CDS |
| GGTGTAGGTGGACCTGCTCC+TGG | 0.479069 | 5.4:-73018311 | MS.gene038384:CDS |
| ATCGTATCCTGGTGGTGCTC+CGG | 0.480341 | 5.4:-73018255 | MS.gene038384:CDS |
| GCTGGTCCTGTTCGTGGTGT+AGG | 0.480465 | 5.4:-73018326 | MS.gene038384:CDS |
| GTTTATGGTCCACCTCGGCC+TGG | 0.481603 | 5.4:-73017936 | MS.gene038384:CDS |
| GGCATACCAGGACGAGGCGG+AGG | 0.485016 | 5.4:+73017984 | None:intergenic |
| GGCATACCAAATTGCGGTGG+AGG | 0.490506 | 5.4:+73018098 | None:intergenic |
| TAAACCGGAACACCACTTCC+AGG | 0.492870 | 5.4:+73017954 | None:intergenic |
| GAACGAGACTCTTCAGGAGG+TGG | 0.493352 | 5.4:+73018449 | None:intergenic |
| TCCACCGCCTCCTATGCCGC+CGG | 0.493463 | 5.4:-73018147 | MS.gene038384:CDS |
| ATTCCAGGACGAGGAGGAGC+AGG | 0.494294 | 5.4:+73018011 | None:intergenic |
| CTCTGCCCATACTGAGGAGG+TGG | 0.494871 | 5.4:+73018077 | None:intergenic |
| GTAAATGCTGCTGCAATGGC+TGG | 0.497801 | 5.4:-73018419 | MS.gene038384:CDS |
| CCTATGGGCCCACCTCCTCC+TGG | 0.499583 | 5.4:-73018053 | MS.gene038384:CDS |
| GGTCCACCTACACCACGAAC+AGG | 0.501617 | 5.4:+73018320 | None:intergenic |
| CCAGGAGGAGGTGGGCCCAT+AGG | 0.503981 | 5.4:+73018053 | None:intergenic |
| GGGCAATTTGGGCAGAGACC+AGG | 0.504430 | 5.4:-73018125 | MS.gene038384:CDS |
| GGTCTTGCTGGTCCTGTTCG+TGG | 0.506497 | 5.4:-73018332 | MS.gene038384:CDS |
| CCAGGAGGAGGAGGCATACC+AGG | 0.507678 | 5.4:+73017972 | None:intergenic |
| TTTGGAGCATTTGGTGGAGG+AGG | 0.507736 | 5.4:+73017909 | None:intergenic |
| ATGCCTCCTCCTCCTGGAAG+TGG | 0.515957 | 5.4:-73017966 | MS.gene038384:CDS |
| CGTGAAGACCGCCGCACACT+CGG | 0.516055 | 5.4:-73018524 | MS.gene038384:CDS |
| GTCTTCACGGTCGCCGTCGG+TGG | 0.516113 | 5.4:+73018538 | None:intergenic |
| TCGCAAACTTCCACCGGCGA+AGG | 0.516980 | 5.4:-73018570 | MS.gene038384:CDS |
| AATTGCCCCGGCGGCATAGG+AGG | 0.518983 | 5.4:+73018140 | None:intergenic |
| GTATGCCACCTCCTCAGTAT+GGG | 0.520179 | 5.4:-73018082 | MS.gene038384:CDS |
| CAGTATGGGCAGAGACCTAT+GGG | 0.520524 | 5.4:-73018068 | MS.gene038384:CDS |
| TGCCCCGGCGGCATAGGAGG+CGG | 0.521351 | 5.4:+73018143 | None:intergenic |
| ATCTGCGGTGGACCTTGTCC+AGG | 0.522039 | 5.4:+73018179 | None:intergenic |
| CCTGGTCAAATGCCATATCC+TGG | 0.523384 | 5.4:-73018206 | MS.gene038384:CDS |
| TGACCAGGTGGACCTTGACC+GGG | 0.528351 | 5.4:+73018221 | None:intergenic |
| GGACCTTGTCCAGGATGTCC+AGG | 0.530197 | 5.4:+73018188 | None:intergenic |
| CGCATAACCGGAGCACCACC+AGG | 0.532565 | 5.4:+73018248 | None:intergenic |
| AAGATTCATGTGGCGGTCGA+AGG | 0.533354 | 5.4:+73018616 | None:intergenic |
| TGATTTGGAGCATTTGGTGG+AGG | 0.533563 | 5.4:+73017906 | None:intergenic |
| CCAGGATATGGCATTTGACC+AGG | 0.535882 | 5.4:+73018206 | None:intergenic |
| TGTTGATTTGGAGCATTTGG+TGG | 0.537037 | 5.4:+73017903 | None:intergenic |
| GGCTGCATCATACCAGGAGC+AGG | 0.537879 | 5.4:+73018299 | None:intergenic |
| AAGGTCCACCGCAGATGGTG+AGG | 0.541082 | 5.4:-73018172 | MS.gene038384:CDS |
| TGAGCTTGAATAACCGGGGC+CGG | 0.541907 | 5.4:+73018359 | None:intergenic |
| TCCTGGAATTGGTCGTGCTG+CGG | 0.542366 | 5.4:-73018396 | MS.gene038384:CDS |
| CTCGGTTTGGTTCTACTTCG+GGG | 0.543292 | 5.4:-73018506 | MS.gene038384:CDS |
| CCGGTTATTCAAGCTCAACC+TGG | 0.546846 | 5.4:-73018353 | MS.gene038384:CDS |
| AGCCGTAAATGCTGCTGCAA+TGG | 0.548215 | 5.4:-73018423 | MS.gene038384:CDS |
| GCACCACCAGGATACGATAC+AGG | 0.548547 | 5.4:+73018260 | None:intergenic |
| GCGGTCTTCACGGTCGCCGT+CGG | 0.552395 | 5.4:+73018535 | None:intergenic |
| GCTCCGGTTATGCGTCCGCC+CGG | 0.552551 | 5.4:-73018239 | MS.gene038384:CDS |
| TGGACAAGGTCCACCGCAGA+TGG | 0.555676 | 5.4:-73018177 | MS.gene038384:CDS |
| CCCGGCGGCATAGGAGGCGG+TGG | 0.555943 | 5.4:+73018146 | None:intergenic |
| CAGGTTGAGCTTGAATAACC+GGG | 0.556075 | 5.4:+73018354 | None:intergenic |
| ATCTGCGGCTGCATCATACC+AGG | 0.556260 | 5.4:+73018293 | None:intergenic |
| CGAGACTCTTCAGGAGGTGG+AGG | 0.557203 | 5.4:+73018452 | None:intergenic |
| TGCGGGTAGAGGTATTCCTC+CGG | 0.560855 | 5.4:-73018378 | MS.gene038384:CDS |
| GGAGGAGGCATACCAGGACG+AGG | 0.563026 | 5.4:+73017978 | None:intergenic |
| TAGAGGTATTCCTCCGGCCC+CGG | 0.565094 | 5.4:-73018372 | MS.gene038384:CDS |
| CGCAAACTTCCACCGGCGAA+GGG | 0.566820 | 5.4:-73018569 | MS.gene038384:CDS |
| GGAGGCATGCCAGGCCGAGG+TGG | 0.567307 | 5.4:+73017927 | None:intergenic |
| AGAGTTTCGCAAACTTCCAC+CGG | 0.569517 | 5.4:-73018576 | MS.gene038384:CDS |
| CCGCCCGGTCAAGGTCCACC+TGG | 0.569962 | 5.4:-73018224 | MS.gene038384:CDS |
| TTCCGGTTTATGGTCCACCT+CGG | 0.570223 | 5.4:-73017941 | MS.gene038384:CDS |
| AATTGCGGTGGAGGACCACC+TGG | 0.573263 | 5.4:+73018107 | None:intergenic |
| ACACCACTTCCAGGAGGAGG+AGG | 0.578227 | 5.4:+73017963 | None:intergenic |
| GGACCCCTCACCATCTGCGG+TGG | 0.578400 | 5.4:+73018167 | None:intergenic |
| GGAGGCATACCAGGACGAGG+CGG | 0.584977 | 5.4:+73017981 | None:intergenic |
| GGAGGCTGCATTCCAGGACG+AGG | 0.587206 | 5.4:+73018002 | None:intergenic |
| CTCTGCCCAAATTGCCCCGG+CGG | 0.590935 | 5.4:+73018131 | None:intergenic |
| GGTCCTGTTCGTGGTGTAGG+TGG | 0.591284 | 5.4:-73018323 | MS.gene038384:CDS |
| CTAACCATCTGACCAGGAGG+AGG | 0.594137 | 5.4:+73018041 | None:intergenic |
| CCAGGACGAGGAGGAGCAGG+AGG | 0.595102 | 5.4:+73018014 | None:intergenic |
| CGAACAGGACCAGCAAGACC+AGG | 0.597167 | 5.4:+73018335 | None:intergenic |
| AGGTCCACCGCAGATGGTGA+GGG | 0.597838 | 5.4:-73018171 | MS.gene038384:CDS |
| GGTCTCTGCCCAAATTGCCC+CGG | 0.603588 | 5.4:+73018128 | None:intergenic |
| CACCGCCTCCTATGCCGCCG+GGG | 0.606476 | 5.4:-73018145 | MS.gene038384:CDS |
| GGCTGCATTCCAGGACGAGG+AGG | 0.612159 | 5.4:+73018005 | None:intergenic |
| GGTGGACCCCTCACCATCTG+CGG | 0.614870 | 5.4:+73018164 | None:intergenic |
| CAATTTGGGCAGAGACCAGG+TGG | 0.620080 | 5.4:-73018122 | MS.gene038384:CDS |
| GGTCCTCTAACCATCTGACC+AGG | 0.622862 | 5.4:+73018035 | None:intergenic |
| GGAACACCACTTCCAGGAGG+AGG | 0.623836 | 5.4:+73017960 | None:intergenic |
| ACAGGCGGACGCGAAATCTG+CGG | 0.625097 | 5.4:+73018278 | None:intergenic |
| GGTCCACCGCAGATGGTGAG+GGG | 0.627488 | 5.4:-73018170 | MS.gene038384:CDS |
| CAAGACGGTCGTCAACTCGT+CGG | 0.630881 | 5.4:-73018650 | MS.gene038384:CDS |
| CCATCTGACCAGGAGGAGGT+GGG | 0.631940 | 5.4:+73018045 | None:intergenic |
| TTCGAACGAGACTCTTCAGG+AGG | 0.632943 | 5.4:+73018446 | None:intergenic |
| GTAGAACCAAACCGAGTGTG+CGG | 0.635167 | 5.4:+73018513 | None:intergenic |
| TATCCTGGACATCCTGGACA+AGG | 0.636817 | 5.4:-73018191 | MS.gene038384:CDS |
| GCTTGAATAACCGGGGCCGG+AGG | 0.649592 | 5.4:+73018362 | None:intergenic |
| GGATATGGCATTTGACCAGG+TGG | 0.660601 | 5.4:+73018209 | None:intergenic |
| GGTCTCTGCCCATACTGAGG+AGG | 0.662332 | 5.4:+73018074 | None:intergenic |
| ATAGGTCTCTGCCCATACTG+AGG | 0.666393 | 5.4:+73018071 | None:intergenic |
| CGAGAACAAGATTCATGTGG+CGG | 0.667753 | 5.4:+73018609 | None:intergenic |
| GGTGGCATACCAAATTGCGG+TGG | 0.671528 | 5.4:+73018095 | None:intergenic |
| CGCCGAGAACAAGATTCATG+TGG | 0.676790 | 5.4:+73018606 | None:intergenic |
| AAGGGTAAGAAAACCACCGA+CGG | 0.686452 | 5.4:-73018551 | MS.gene038384:CDS |
| CCTCTAACCATCTGACCAGG+AGG | 0.688741 | 5.4:+73018038 | None:intergenic |
| GAACCAAACCGAGTGTGCGG+CGG | 0.694201 | 5.4:+73018516 | None:intergenic |
| GGAGGTGGCATACCAAATTG+CGG | 0.698345 | 5.4:+73018092 | None:intergenic |
| ATGCGAGTGACAATCCAAGA+CGG | 0.720905 | 5.4:-73018665 | MS.gene038384:CDS |
| ACCGGAACACCACTTCCAGG+AGG | 0.726433 | 5.4:+73017957 | None:intergenic |
| AGGTTGAGCTTGAATAACCG+GGG | 0.731227 | 5.4:+73018355 | None:intergenic |
| CCGCCTGTATCGTATCCTGG+TGG | 0.731676 | 5.4:-73018263 | MS.gene038384:CDS |
| CCAGGTGGACCTTGACCGGG+CGG | 0.734141 | 5.4:+73018224 | None:intergenic |
| CCACCAGGATACGATACAGG+CGG | 0.734698 | 5.4:+73018263 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTGATGTATTGAAGCATTT+TGG | + | chr5.4:73017912-73017931 | None:intergenic | 30.0% |
| TCAACTCGTCGGAAAATTCA+TGG | - | chr5.4:73017964-73017983 | MS.gene038384:CDS | 40.0% | |
| ! | GTTGTTTCGATGACAGTTGA+AGG | - | chr5.4:73018127-73018146 | MS.gene038384:CDS | 40.0% |
| !! | TGCTGTTGATTTGGAGCATT+TGG | + | chr5.4:73018706-73018725 | None:intergenic | 40.0% |
| !! | TGTTGATTTGGAGCATTTGG+TGG | + | chr5.4:73018703-73018722 | None:intergenic | 40.0% |
| AAGGGTAAGAAAACCACCGA+CGG | - | chr5.4:73018052-73018071 | MS.gene038384:CDS | 45.0% | |
| AGAGTTTCGCAAACTTCCAC+CGG | - | chr5.4:73018027-73018046 | MS.gene038384:CDS | 45.0% | |
| AGCCATTGCAGCAGCATTTA+CGG | + | chr5.4:73018185-73018204 | None:intergenic | 45.0% | |
| AGGTTGAGCTTGAATAACCG+GGG | + | chr5.4:73018251-73018270 | None:intergenic | 45.0% | |
| ATGCGAGTGACAATCCAAGA+CGG | - | chr5.4:73017938-73017957 | MS.gene038384:CDS | 45.0% | |
| CGAGAACAAGATTCATGTGG+CGG | + | chr5.4:73017997-73018016 | None:intergenic | 45.0% | |
| CGCCACATGAATCTTGTTCT+CGG | - | chr5.4:73017995-73018014 | MS.gene038384:CDS | 45.0% | |
| ! | CACTGTTGCTGCTGTTGATT+TGG | + | chr5.4:73018715-73018734 | None:intergenic | 45.0% |
| ! | CAGGTTGAGCTTGAATAACC+GGG | + | chr5.4:73018252-73018271 | None:intergenic | 45.0% |
| ! | CCAGGTTGAGCTTGAATAAC+CGG | + | chr5.4:73018253-73018272 | None:intergenic | 45.0% |
| ! | TGATTTGGAGCATTTGGTGG+AGG | + | chr5.4:73018700-73018719 | None:intergenic | 45.0% |
| !! | ACTCGGTTTGGTTCTACTTC+GGG | - | chr5.4:73018096-73018115 | MS.gene038384:CDS | 45.0% |
| !! | CACTCGGTTTGGTTCTACTT+CGG | - | chr5.4:73018095-73018114 | MS.gene038384:CDS | 45.0% |
| AAGATTCATGTGGCGGTCGA+AGG | + | chr5.4:73017990-73018009 | None:intergenic | 50.0% | |
| AGCCGTAAATGCTGCTGCAA+TGG | - | chr5.4:73018180-73018199 | MS.gene038384:CDS | 50.0% | |
| ATAGGTCTCTGCCCATACTG+AGG | + | chr5.4:73018535-73018554 | None:intergenic | 50.0% | |
| ATGCCATATCCTGGACATCC+TGG | - | chr5.4:73018406-73018425 | MS.gene038384:CDS | 50.0% | |
| CAGTATGGGCAGAGACCTAT+GGG | - | chr5.4:73018535-73018554 | MS.gene038384:CDS | 50.0% | |
| CCAGGATATGGCATTTGACC+AGG | + | chr5.4:73018400-73018419 | None:intergenic | 50.0% | |
| CCGGTTATTCAAGCTCAACC+TGG | - | chr5.4:73018250-73018269 | MS.gene038384:CDS | 50.0% | |
| CCTGGTCAAATGCCATATCC+TGG | - | chr5.4:73018397-73018416 | MS.gene038384:CDS | 50.0% | |
| CGCCGAGAACAAGATTCATG+TGG | + | chr5.4:73018000-73018019 | None:intergenic | 50.0% | |
| GCTTTCGAACGAGACTCTTC+AGG | + | chr5.4:73018163-73018182 | None:intergenic | 50.0% | |
| GGAAGTGGTGTTCCGGTTTA+TGG | - | chr5.4:73018652-73018671 | MS.gene038384:CDS | 50.0% | |
| GGAGGTGGCATACCAAATTG+CGG | + | chr5.4:73018514-73018533 | None:intergenic | 50.0% | |
| GGATATGGCATTTGACCAGG+TGG | + | chr5.4:73018397-73018416 | None:intergenic | 50.0% | |
| GTAAATGCTGCTGCAATGGC+TGG | - | chr5.4:73018184-73018203 | MS.gene038384:CDS | 50.0% | |
| GTAGAACCAAACCGAGTGTG+CGG | + | chr5.4:73018093-73018112 | None:intergenic | 50.0% | |
| GTATGCCACCTCCTCAGTAT+GGG | - | chr5.4:73018521-73018540 | MS.gene038384:CDS | 50.0% | |
| TAAACCGGAACACCACTTCC+AGG | + | chr5.4:73018652-73018671 | None:intergenic | 50.0% | |
| TATCCTGGACATCCTGGACA+AGG | - | chr5.4:73018412-73018431 | MS.gene038384:CDS | 50.0% | |
| TCAGTATGGGCAGAGACCTA+TGG | - | chr5.4:73018534-73018553 | MS.gene038384:CDS | 50.0% | |
| TGTCCAGGATGTCCAGGATA+TGG | + | chr5.4:73018412-73018431 | None:intergenic | 50.0% | |
| TTCCGGTTTATGGTCCACCT+CGG | - | chr5.4:73018662-73018681 | MS.gene038384:CDS | 50.0% | |
| TTCGAACGAGACTCTTCAGG+AGG | + | chr5.4:73018160-73018179 | None:intergenic | 50.0% | |
| ! | GTGGTTTTCTTACCCTTCGC+CGG | + | chr5.4:73018049-73018068 | None:intergenic | 50.0% |
| ! | TTTGGAGCATTTGGTGGAGG+AGG | + | chr5.4:73018697-73018716 | None:intergenic | 50.0% |
| !! | CTCGGTTTGGTTCTACTTCG+GGG | - | chr5.4:73018097-73018116 | MS.gene038384:CDS | 50.0% |
| ATCTGCGGCTGCATCATACC+AGG | + | chr5.4:73018313-73018332 | None:intergenic | 55.0% | |
| CAAGACGGTCGTCAACTCGT+CGG | - | chr5.4:73017953-73017972 | MS.gene038384:CDS | 55.0% | |
| CAATTTGGGCAGAGACCAGG+TGG | - | chr5.4:73018481-73018500 | MS.gene038384:CDS | 55.0% | |
| CCACCAGGATACGATACAGG+CGG | + | chr5.4:73018343-73018362 | None:intergenic | 55.0% | |
| CCTCCTGGTCAGATGGTTAG+AGG | - | chr5.4:73018565-73018584 | MS.gene038384:CDS | 55.0% | |
| CCTCTAACCATCTGACCAGG+AGG | + | chr5.4:73018568-73018587 | None:intergenic | 55.0% | |
| CTAACCATCTGACCAGGAGG+AGG | + | chr5.4:73018565-73018584 | None:intergenic | 55.0% | |
| GAACGAGACTCTTCAGGAGG+TGG | + | chr5.4:73018157-73018176 | None:intergenic | 55.0% | |
| GCACCACCAGGATACGATAC+AGG | + | chr5.4:73018346-73018365 | None:intergenic | 55.0% | |
| GGCATACCAAATTGCGGTGG+AGG | + | chr5.4:73018508-73018527 | None:intergenic | 55.0% | |
| GGTATGCCACCTCCTCAGTA+TGG | - | chr5.4:73018520-73018539 | MS.gene038384:CDS | 55.0% | |
| GGTCCTCTAACCATCTGACC+AGG | + | chr5.4:73018571-73018590 | None:intergenic | 55.0% | |
| GGTGGCATACCAAATTGCGG+TGG | + | chr5.4:73018511-73018530 | None:intergenic | 55.0% | |
| TCCTCCTGGAAGTGGTGTTC+CGG | - | chr5.4:73018645-73018664 | MS.gene038384:CDS | 55.0% | |
| TCCTGGAATTGGTCGTGCTG+CGG | - | chr5.4:73018207-73018226 | MS.gene038384:CDS | 55.0% | |
| TGAGCTTGAATAACCGGGGC+CGG | + | chr5.4:73018247-73018266 | None:intergenic | 55.0% | |
| TTGACCAGGTGGACCTTGAC+CGG | + | chr5.4:73018386-73018405 | None:intergenic | 55.0% | |
| ! | ATCGTATCCTGGTGGTGCTC+CGG | - | chr5.4:73018348-73018367 | MS.gene038384:CDS | 55.0% |
| ! | GCAATGGCTGGTCCTGGAAT+TGG | - | chr5.4:73018196-73018215 | MS.gene038384:CDS | 55.0% |
| ! | GTTTTCTTACCCTTCGCCGG+TGG | + | chr5.4:73018046-73018065 | None:intergenic | 55.0% |
| !! | CAAGCTCAACCTGGTCTTGC+TGG | - | chr5.4:73018259-73018278 | MS.gene038384:CDS | 55.0% |
| !! | TGCGGGTAGAGGTATTCCTC+CGG | - | chr5.4:73018225-73018244 | MS.gene038384:CDS | 55.0% |
| AAGGTCCACCGCAGATGGTG+AGG | - | chr5.4:73018431-73018450 | MS.gene038384:CDS | 60.0% | |
| AATTGCGGTGGAGGACCACC+TGG | + | chr5.4:73018499-73018518 | None:intergenic | 60.0% | |
| ACACCACTTCCAGGAGGAGG+AGG | + | chr5.4:73018643-73018662 | None:intergenic | 60.0% | |
| ACAGGCGGACGCGAAATCTG+CGG | + | chr5.4:73018328-73018347 | None:intergenic | 60.0% | |
| ACCATCTGACCAGGAGGAGG+TGG | + | chr5.4:73018562-73018581 | None:intergenic | 60.0% | |
| ACCGGAACACCACTTCCAGG+AGG | + | chr5.4:73018649-73018668 | None:intergenic | 60.0% | |
| AGGTCCACCGCAGATGGTGA+GGG | - | chr5.4:73018432-73018451 | MS.gene038384:CDS | 60.0% | |
| ATCTGCGGTGGACCTTGTCC+AGG | + | chr5.4:73018427-73018446 | None:intergenic | 60.0% | |
| ATGCCTCCTCCTCCTGGAAG+TGG | - | chr5.4:73018637-73018656 | MS.gene038384:CDS | 60.0% | |
| ATTCCAGGACGAGGAGGAGC+AGG | + | chr5.4:73018595-73018614 | None:intergenic | 60.0% | |
| ATTGGTCGTGCTGCGGGTAG+AGG | - | chr5.4:73018214-73018233 | MS.gene038384:CDS | 60.0% | |
| CCATCTGACCAGGAGGAGGT+GGG | + | chr5.4:73018561-73018580 | None:intergenic | 60.0% | |
| CCGCCTGTATCGTATCCTGG+TGG | - | chr5.4:73018340-73018359 | MS.gene038384:CDS | 60.0% | |
| CCTGGAATTGGTCGTGCTGC+GGG | - | chr5.4:73018208-73018227 | MS.gene038384:CDS | 60.0% | |
| CGAACAGGACCAGCAAGACC+AGG | + | chr5.4:73018271-73018290 | None:intergenic | 60.0% | |
| CGAGACTCTTCAGGAGGTGG+AGG | + | chr5.4:73018154-73018173 | None:intergenic | 60.0% | |
| CGCAAACTTCCACCGGCGAA+GGG | - | chr5.4:73018034-73018053 | MS.gene038384:CDS | 60.0% | |
| CGTCCGCCTGTATCGTATCC+TGG | - | chr5.4:73018337-73018356 | MS.gene038384:CDS | 60.0% | |
| CTATGCCGCCGGGGCAATTT+GGG | - | chr5.4:73018467-73018486 | MS.gene038384:CDS | 60.0% | |
| CTCTGCCCATACTGAGGAGG+TGG | + | chr5.4:73018529-73018548 | None:intergenic | 60.0% | |
| GAACCAAACCGAGTGTGCGG+CGG | + | chr5.4:73018090-73018109 | None:intergenic | 60.0% | |
| GCTGGTCCTGTTCGTGGTGT+AGG | - | chr5.4:73018277-73018296 | MS.gene038384:CDS | 60.0% | |
| GGAACACCACTTCCAGGAGG+AGG | + | chr5.4:73018646-73018665 | None:intergenic | 60.0% | |
| GGACCTTGTCCAGGATGTCC+AGG | + | chr5.4:73018418-73018437 | None:intergenic | 60.0% | |
| GGCCGAGGTGGACCATAAAC+CGG | + | chr5.4:73018667-73018686 | None:intergenic | 60.0% | |
| GGCTGCATCATACCAGGAGC+AGG | + | chr5.4:73018307-73018326 | None:intergenic | 60.0% | |
| GGGCAATTTGGGCAGAGACC+AGG | - | chr5.4:73018478-73018497 | MS.gene038384:CDS | 60.0% | |
| GGTCCACCTACACCACGAAC+AGG | + | chr5.4:73018286-73018305 | None:intergenic | 60.0% | |
| GGTCCTGTTCGTGGTGTAGG+TGG | - | chr5.4:73018280-73018299 | MS.gene038384:CDS | 60.0% | |
| GGTCTCTGCCCAAATTGCCC+CGG | + | chr5.4:73018478-73018497 | None:intergenic | 60.0% | |
| GGTCTCTGCCCATACTGAGG+AGG | + | chr5.4:73018532-73018551 | None:intergenic | 60.0% | |
| GGTCTTGCTGGTCCTGTTCG+TGG | - | chr5.4:73018271-73018290 | MS.gene038384:CDS | 60.0% | |
| GGTGGTCCTCCACCGCAATT+TGG | - | chr5.4:73018499-73018518 | MS.gene038384:CDS | 60.0% | |
| GTTTATGGTCCACCTCGGCC+TGG | - | chr5.4:73018667-73018686 | MS.gene038384:CDS | 60.0% | |
| TCGCAAACTTCCACCGGCGA+AGG | - | chr5.4:73018033-73018052 | MS.gene038384:CDS | 60.0% | |
| TGACCAGGTGGACCTTGACC+GGG | + | chr5.4:73018385-73018404 | None:intergenic | 60.0% | |
| TGGACAAGGTCCACCGCAGA+TGG | - | chr5.4:73018426-73018445 | MS.gene038384:CDS | 60.0% | |
| ! | CGACGAGTTGACGACCGTCT+TGG | + | chr5.4:73017955-73017974 | None:intergenic | 60.0% |
| ! | TTTGGTGGAGGAGGCATGCC+AGG | + | chr5.4:73018688-73018707 | None:intergenic | 60.0% |
| !! | TAGAGGTATTCCTCCGGCCC+CGG | - | chr5.4:73018231-73018250 | MS.gene038384:CDS | 60.0% |
| AATTGCCCCGGCGGCATAGG+AGG | + | chr5.4:73018466-73018485 | None:intergenic | 65.0% | |
| AGACCGCCGCACACTCGGTT+TGG | - | chr5.4:73018084-73018103 | MS.gene038384:CDS | 65.0% | |
| CCAAATTGCCCCGGCGGCAT+AGG | + | chr5.4:73018469-73018488 | None:intergenic | 65.0% | |
| CCCACCTCCTCCTGGTCAGA+TGG | - | chr5.4:73018558-73018577 | MS.gene038384:CDS | 65.0% | |
| CCCGCAGCACGACCAATTCC+AGG | + | chr5.4:73018211-73018230 | None:intergenic | 65.0% | |
| CCTATGCCGCCGGGGCAATT+TGG | - | chr5.4:73018466-73018485 | MS.gene038384:CDS | 65.0% | |
| CCTGGTATGCCTCCTCCTCC+TGG | - | chr5.4:73018631-73018650 | MS.gene038384:CDS | 65.0% | |
| CGAGTGTGCGGCGGTCTTCA+CGG | + | chr5.4:73018081-73018100 | None:intergenic | 65.0% | |
| CGTGAAGACCGCCGCACACT+CGG | - | chr5.4:73018079-73018098 | MS.gene038384:CDS | 65.0% | |
| CTCTGCCCAAATTGCCCCGG+CGG | + | chr5.4:73018475-73018494 | None:intergenic | 65.0% | |
| GCTTGAATAACCGGGGCCGG+AGG | + | chr5.4:73018244-73018263 | None:intergenic | 65.0% | |
| GGAGGCTGCATTCCAGGACG+AGG | + | chr5.4:73018604-73018623 | None:intergenic | 65.0% | |
| GGCTGCATTCCAGGACGAGG+AGG | + | chr5.4:73018601-73018620 | None:intergenic | 65.0% | |
| GGTCCACCGCAGATGGTGAG+GGG | - | chr5.4:73018433-73018452 | MS.gene038384:CDS | 65.0% | |
| GGTGGACCCCTCACCATCTG+CGG | + | chr5.4:73018442-73018461 | None:intergenic | 65.0% | |
| GGTGTAGGTGGACCTGCTCC+TGG | - | chr5.4:73018292-73018311 | MS.gene038384:CDS | 65.0% | |
| GTTATGCGTCCGCCCGGTCA+AGG | - | chr5.4:73018370-73018389 | MS.gene038384:CDS | 65.0% | |
| TGACCGGGCGGACGCATAAC+CGG | + | chr5.4:73018370-73018389 | None:intergenic | 65.0% | |
| ! | CCAGGAGGAGGAGGCATACC+AGG | + | chr5.4:73018634-73018653 | None:intergenic | 65.0% |
| ! | CGCATAACCGGAGCACCACC+AGG | + | chr5.4:73018358-73018377 | None:intergenic | 65.0% |
| ! | GCTGCTGCAATGGCTGGTCC+TGG | - | chr5.4:73018190-73018209 | MS.gene038384:CDS | 65.0% |
| ! | GGAGGAGGCATACCAGGACG+AGG | + | chr5.4:73018628-73018647 | None:intergenic | 65.0% |
| ! | GGAGGCATACCAGGACGAGG+CGG | + | chr5.4:73018625-73018644 | None:intergenic | 65.0% |
| ATGCAGCCTCCGCCTCGTCC+TGG | - | chr5.4:73018613-73018632 | MS.gene038384:CDS | 70.0% | |
| CCAGGACGAGGAGGAGCAGG+AGG | + | chr5.4:73018592-73018611 | None:intergenic | 70.0% | |
| CCAGGAGGAGGTGGGCCCAT+AGG | + | chr5.4:73018553-73018572 | None:intergenic | 70.0% | |
| CCAGGTGGACCTTGACCGGG+CGG | + | chr5.4:73018382-73018401 | None:intergenic | 70.0% | |
| CCTATGGGCCCACCTCCTCC+TGG | - | chr5.4:73018550-73018569 | MS.gene038384:CDS | 70.0% | |
| CCTCCTGCTCCTCCTCGTCC+TGG | - | chr5.4:73018589-73018608 | MS.gene038384:CDS | 70.0% | |
| CGAGGCGGAGGCTGCATTCC+AGG | + | chr5.4:73018610-73018629 | None:intergenic | 70.0% | |
| GCGGTCTTCACGGTCGCCGT+CGG | + | chr5.4:73018071-73018090 | None:intergenic | 70.0% | |
| GCTCCGGTTATGCGTCCGCC+CGG | - | chr5.4:73018364-73018383 | MS.gene038384:CDS | 70.0% | |
| GGACCCCTCACCATCTGCGG+TGG | + | chr5.4:73018439-73018458 | None:intergenic | 70.0% | |
| GGCATACCAGGACGAGGCGG+AGG | + | chr5.4:73018622-73018641 | None:intergenic | 70.0% | |
| GTCTTCACGGTCGCCGTCGG+TGG | + | chr5.4:73018068-73018087 | None:intergenic | 70.0% | |
| TCCACCGCCTCCTATGCCGC+CGG | - | chr5.4:73018456-73018475 | MS.gene038384:CDS | 70.0% | |
| CACCGCCTCCTATGCCGCCG+GGG | - | chr5.4:73018458-73018477 | MS.gene038384:CDS | 75.0% | |
| CCACCGCCTCCTATGCCGCC+GGG | - | chr5.4:73018457-73018476 | MS.gene038384:CDS | 75.0% | |
| CCGCCCGGTCAAGGTCCACC+TGG | - | chr5.4:73018379-73018398 | MS.gene038384:CDS | 75.0% | |
| TGCCCCGGCGGCATAGGAGG+CGG | + | chr5.4:73018463-73018482 | None:intergenic | 75.0% | |
| ! | GGAGGAGGCATGCCAGGCCG+AGG | + | chr5.4:73018682-73018701 | None:intergenic | 75.0% |
| ! | GGAGGCATGCCAGGCCGAGG+TGG | + | chr5.4:73018679-73018698 | None:intergenic | 75.0% |
| ! | CCCGGCGGCATAGGAGGCGG+TGG | + | chr5.4:73018460-73018479 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 73017890 | 73018735 | 73017890 | ID=MS.gene038384 |
| chr5.4 | mRNA | 73017890 | 73018735 | 73017890 | ID=MS.gene038384.t1;Parent=MS.gene038384 |
| chr5.4 | exon | 73017890 | 73018735 | 73017890 | ID=MS.gene038384.t1.exon1;Parent=MS.gene038384.t1 |
| chr5.4 | CDS | 73017890 | 73018735 | 73017890 | ID=cds.MS.gene038384.t1;Parent=MS.gene038384.t1 |
| Gene Sequence |
| Protein sequence |
