Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038788.t1 | XP_003609137.1 | 100 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 6.00E-78 | 300.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038788.t1 | P49592 | 83.8 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 2.7e-66 | 252.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038788.t1 | G7JT12 | 100.0 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 4.4e-78 | 300.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038788.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene76728 | MS.gene038788 | PPI |
| MS.gene87743 | MS.gene038788 | PPI |
| MS.gene038788 | MS.gene42075 | PPI |
| MS.gene038788 | MS.gene82237 | PPI |
| MS.gene038788 | MS.gene77045 | PPI |
| MS.gene038788 | MS.gene48819 | PPI |
| MS.gene87064 | MS.gene038788 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038788.t1 | MTR_4g112380 | 100.000 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 7.71e-114 | 319 |
| MS.gene038788.t1 | MTR_2g056000 | 85.621 | 153 | 22 | 0 | 1 | 153 | 31 | 183 | 3.26e-97 | 278 |
| MS.gene038788.t1 | MTR_1g072790 | 41.176 | 85 | 48 | 1 | 12 | 94 | 30 | 114 | 2.05e-17 | 75.1 |
| MS.gene038788.t1 | MTR_0392s0020 | 31.250 | 112 | 71 | 1 | 5 | 110 | 12 | 123 | 4.49e-16 | 70.5 |
| MS.gene038788.t1 | MTR_7g100650 | 37.500 | 80 | 50 | 0 | 12 | 91 | 27 | 106 | 6.74e-16 | 70.9 |
| MS.gene038788.t1 | MTR_3g058980 | 37.179 | 78 | 49 | 0 | 12 | 89 | 28 | 105 | 7.87e-16 | 71.2 |
| MS.gene038788.t1 | MTR_7g061270 | 38.462 | 78 | 48 | 0 | 12 | 89 | 27 | 104 | 8.54e-16 | 70.5 |
| MS.gene038788.t1 | MTR_5g095740 | 36.250 | 80 | 51 | 0 | 12 | 91 | 24 | 103 | 1.28e-15 | 70.5 |
| MS.gene038788.t1 | MTR_4g133952 | 37.975 | 79 | 49 | 0 | 11 | 89 | 58 | 136 | 1.45e-15 | 71.2 |
| MS.gene038788.t1 | MTR_4g119500 | 30.682 | 88 | 61 | 0 | 12 | 99 | 23 | 110 | 4.88e-15 | 67.8 |
| MS.gene038788.t1 | MTR_1g039040 | 28.723 | 94 | 67 | 0 | 6 | 99 | 1 | 94 | 5.16e-15 | 68.9 |
| MS.gene038788.t1 | MTR_2g026710 | 32.530 | 83 | 56 | 0 | 7 | 89 | 13 | 95 | 3.17e-14 | 66.6 |
| MS.gene038788.t1 | MTR_1g083070 | 31.646 | 79 | 54 | 0 | 13 | 91 | 6 | 84 | 4.42e-14 | 65.1 |
| MS.gene038788.t1 | MTR_8g093920 | 29.545 | 88 | 62 | 0 | 12 | 99 | 41 | 128 | 7.68e-14 | 66.2 |
| MS.gene038788.t1 | MTR_8g091720 | 32.143 | 84 | 57 | 0 | 5 | 88 | 22 | 105 | 1.17e-13 | 65.9 |
| MS.gene038788.t1 | MTR_1g088860 | 32.051 | 78 | 53 | 0 | 12 | 89 | 37 | 114 | 2.99e-13 | 64.3 |
| MS.gene038788.t1 | MTR_4g133938 | 35.135 | 74 | 48 | 0 | 16 | 89 | 24 | 97 | 5.94e-13 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038788.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
| MS.gene038788.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
| MS.gene038788.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
| MS.gene038788.t1 | AT5G23090 | 83.117 | 154 | 23 | 2 | 1 | 152 | 1 | 153 | 5.02e-91 | 261 |
| MS.gene038788.t1 | AT5G08190 | 88.652 | 141 | 16 | 0 | 1 | 141 | 1 | 141 | 4.62e-84 | 244 |
| MS.gene038788.t1 | AT5G08190 | 87.943 | 141 | 16 | 1 | 1 | 141 | 1 | 140 | 1.94e-81 | 237 |
| MS.gene038788.t1 | AT5G23090 | 75.974 | 154 | 22 | 2 | 1 | 152 | 1 | 141 | 5.10e-81 | 236 |
| MS.gene038788.t1 | AT2G38880 | 31.068 | 103 | 71 | 0 | 12 | 114 | 22 | 124 | 4.40e-17 | 73.2 |
| MS.gene038788.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.56e-16 | 72.0 |
| MS.gene038788.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
| MS.gene038788.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
| MS.gene038788.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
| MS.gene038788.t1 | AT2G38880 | 34.409 | 93 | 59 | 1 | 12 | 102 | 22 | 114 | 2.05e-16 | 72.0 |
| MS.gene038788.t1 | AT2G38880 | 34.409 | 93 | 59 | 1 | 12 | 102 | 22 | 114 | 2.05e-16 | 72.0 |
| MS.gene038788.t1 | AT4G14540 | 31.000 | 100 | 69 | 0 | 12 | 111 | 22 | 121 | 2.54e-16 | 72.0 |
| MS.gene038788.t1 | AT3G53340 | 35.000 | 100 | 64 | 1 | 12 | 111 | 30 | 128 | 4.80e-16 | 71.6 |
| MS.gene038788.t1 | AT3G53340 | 35.000 | 100 | 64 | 1 | 12 | 111 | 30 | 128 | 4.80e-16 | 71.6 |
| MS.gene038788.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
| MS.gene038788.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
| MS.gene038788.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
| MS.gene038788.t1 | AT2G38880 | 35.294 | 85 | 53 | 1 | 12 | 94 | 22 | 106 | 8.84e-16 | 69.3 |
| MS.gene038788.t1 | AT5G47640 | 30.631 | 111 | 76 | 1 | 12 | 122 | 28 | 137 | 9.96e-16 | 70.9 |
| MS.gene038788.t1 | AT5G47670 | 37.975 | 79 | 49 | 0 | 11 | 89 | 29 | 107 | 1.53e-15 | 70.9 |
| MS.gene038788.t1 | AT5G47670 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.15e-15 | 70.9 |
| MS.gene038788.t1 | AT5G47670 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.15e-15 | 70.9 |
| MS.gene038788.t1 | AT3G53340 | 37.179 | 78 | 49 | 0 | 12 | 89 | 30 | 107 | 7.52e-15 | 67.0 |
| MS.gene038788.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
| MS.gene038788.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
| MS.gene038788.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
| MS.gene038788.t1 | AT3G53340 | 32.955 | 88 | 59 | 0 | 12 | 99 | 30 | 117 | 2.46e-14 | 66.6 |
| MS.gene038788.t1 | AT3G53340 | 32.955 | 88 | 59 | 0 | 12 | 99 | 30 | 117 | 2.46e-14 | 66.6 |
| MS.gene038788.t1 | AT1G21970 | 32.099 | 81 | 55 | 0 | 11 | 91 | 59 | 139 | 4.51e-14 | 67.4 |
| MS.gene038788.t1 | AT1G09030 | 31.250 | 80 | 55 | 0 | 12 | 91 | 4 | 83 | 1.69e-13 | 63.9 |
| MS.gene038788.t1 | AT2G13570 | 32.468 | 77 | 52 | 0 | 12 | 88 | 37 | 113 | 5.51e-13 | 64.3 |
| MS.gene038788.t1 | AT2G47810 | 30.263 | 76 | 53 | 0 | 12 | 87 | 52 | 127 | 9.59e-12 | 59.7 |
Find 38 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTAGCTAATCTAATTT+TGG | 0.141370 | 8.3:+14583851 | None:intergenic |
| TGGTCACCATCTGGCTGTTT+TGG | 0.240495 | 8.3:+14583871 | None:intergenic |
| ATACTTTAAAAGCTGGTAAA+TGG | 0.274950 | 8.3:-14583990 | MS.gene038788:CDS |
| TTTCCCCAGGTGCTTGGATT+TGG | 0.324476 | 8.3:-14584832 | MS.gene038788:intron |
| CAGCAAGATACTTTAAAAGC+TGG | 0.415421 | 8.3:-14583997 | MS.gene038788:CDS |
| TGCGCCTGAGCACGTATTGA+AGG | 0.421286 | 8.3:-14585604 | MS.gene038788:CDS |
| AGCACTCGATCAATAGATCT+TGG | 0.421579 | 8.3:+14586378 | None:intergenic |
| CTCTCTGCTACATACTTCAT+TGG | 0.429101 | 8.3:+14585641 | None:intergenic |
| TATGTAGCAGAGAGGACAAA+AGG | 0.468267 | 8.3:-14585632 | MS.gene038788:CDS |
| GCACGTATTGAAGGCTCTAC+AGG | 0.479345 | 8.3:-14585595 | MS.gene038788:intron |
| CGATTTGCCAACGATATCCA+TGG | 0.490386 | 8.3:+14587228 | None:intergenic |
| GAGGCCCGCGCTAGGATGAA+TGG | 0.491671 | 8.3:-14583907 | MS.gene038788:CDS |
| CCCGCGCTAGGATGAATGGT+GGG | 0.499784 | 8.3:-14583903 | MS.gene038788:CDS |
| CTCGCCACGCGGACATCTTG+CGG | 0.511342 | 8.3:+14586407 | None:intergenic |
| GCACTCGATCAATAGATCTT+GGG | 0.526789 | 8.3:+14586379 | None:intergenic |
| AGGTTAAATTATGGATCCCA+TGG | 0.527047 | 8.3:-14587245 | None:intergenic |
| CCCACCATTCATCCTAGCGC+GGG | 0.529331 | 8.3:+14583903 | None:intergenic |
| AGAGCCTTCAATACGTGCTC+AGG | 0.530619 | 8.3:+14585600 | None:intergenic |
| TGTTTGCAGAGGCCCGCGCT+AGG | 0.547845 | 8.3:-14583915 | MS.gene038788:CDS |
| CTATTGATCGAGTGCTGTGT+AGG | 0.564923 | 8.3:-14586371 | MS.gene038788:intron |
| CCCCACCATTCATCCTAGCG+CGG | 0.565574 | 8.3:+14583902 | None:intergenic |
| AAAGCTGGTAAATGGAGCAA+TGG | 0.581041 | 8.3:-14583982 | MS.gene038788:CDS |
| AGCATACGAACAACACAAGC+TGG | 0.587192 | 8.3:-14584785 | MS.gene038788:CDS |
| GTTTATAAATCTCATCTCAT+CGG | 0.592523 | 8.3:-14585667 | MS.gene038788:CDS |
| ATGGATCCCATGGATATCGT+TGG | 0.592534 | 8.3:-14587235 | MS.gene038788:CDS |
| GGATATCGTTGGCAAATCGA+AGG | 0.607995 | 8.3:-14587224 | MS.gene038788:CDS |
| GATTTGCCAACGATATCCAT+GGG | 0.608748 | 8.3:+14587229 | None:intergenic |
| AAGCATTAGCAGAACAACAA+AGG | 0.632993 | 8.3:-14583939 | MS.gene038788:CDS |
| GCCCGCGCTAGGATGAATGG+TGG | 0.635837 | 8.3:-14583904 | MS.gene038788:CDS |
| ACAACACAAGCTGGAGACCA+TGG | 0.639569 | 8.3:-14584776 | MS.gene038788:intron |
| GAAGATGCTTCGCTTCCCAA+AGG | 0.654221 | 8.3:-14587202 | MS.gene038788:intron |
| ATTGCTCCAAAACAGCCAGA+TGG | 0.666319 | 8.3:-14583877 | MS.gene038788:CDS |
| CCGCGCTAGGATGAATGGTG+GGG | 0.672298 | 8.3:-14583902 | MS.gene038788:CDS |
| ACAACAAAGGATGTTTGCAG+AGG | 0.686768 | 8.3:-14583926 | MS.gene038788:CDS |
| CTTGGGTGTCTCTCGCCACG+CGG | 0.690389 | 8.3:+14586396 | None:intergenic |
| CAATGAAGTATGTAGCAGAG+AGG | 0.698906 | 8.3:-14585640 | MS.gene038788:CDS |
| CAATGGAGCTGAGATGACTG+AGG | 0.705174 | 8.3:-14583965 | MS.gene038788:CDS |
| GTTACCGCAAGATGTCCGCG+TGG | 0.763213 | 8.3:-14586411 | MS.gene038788:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACTAAAAAAAAAACTAT+GGG | + | chr8.3:14585986-14586005 | None:intergenic | 10.0% |
| !! | TTTATAATGATAATTAATAG+TGG | - | chr8.3:14584535-14584554 | MS.gene038788:intron | 10.0% |
| !!! | ATGTTTTTTTATTTTTTTTG+AGG | - | chr8.3:14584998-14585017 | MS.gene038788:intron | 10.0% |
| !!! | ATTACTAATATTTGTTTTAT+CGG | - | chr8.3:14583935-14583954 | MS.gene038788:CDS | 10.0% |
| !!! | ATTTATTTCAATTCTAAAAT+CGG | - | chr8.3:14586141-14586160 | MS.gene038788:intron | 10.0% |
| !!! | TGTTTTTTTATTTTTTTTGA+GGG | - | chr8.3:14584999-14585018 | MS.gene038788:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTTTGAAC+AGG | - | chr8.3:14584155-14584174 | MS.gene038788:intron | 10.0% |
| !! | AACAATGACAAAAATAATTA+AGG | - | chr8.3:14584661-14584680 | MS.gene038788:intron | 15.0% |
| !! | AATAGATCTTTAATCAATAA+AGG | + | chr8.3:14585861-14585880 | None:intergenic | 15.0% |
| !! | ATTAAATTTGACTATTCAAA+TGG | - | chr8.3:14585589-14585608 | MS.gene038788:intron | 15.0% |
| !! | CTAAGATTATCAAAAATAAA+TGG | + | chr8.3:14585363-14585382 | None:intergenic | 15.0% |
| !! | CTTAACTAAAAAAAAAACTA+TGG | + | chr8.3:14585987-14586006 | None:intergenic | 15.0% |
| !! | GCAAATTTATATAATCTTAT+GGG | + | chr8.3:14585217-14585236 | None:intergenic | 15.0% |
| !! | TTAAATTTGACTATTCAAAT+GGG | - | chr8.3:14585590-14585609 | MS.gene038788:intron | 15.0% |
| !! | TTTAAAAACACAAACTAAAA+TGG | + | chr8.3:14586520-14586539 | None:intergenic | 15.0% |
| !!! | AACATTTTAATTATAATCCA+TGG | + | chr8.3:14584956-14584975 | None:intergenic | 15.0% |
| !!! | GAGTTTATTATTTTATTTCA+GGG | - | chr8.3:14584806-14584825 | MS.gene038788:CDS | 15.0% |
| !!! | GTTTTTTTATTTTTTTTGAG+GGG | - | chr8.3:14585000-14585019 | MS.gene038788:intron | 15.0% |
| !!! | TAAATTTGTTTTGAATGAAA+TGG | + | chr8.3:14586126-14586145 | None:intergenic | 15.0% |
| !!! | TTTAGTTTGTGTTTTTAAAT+CGG | - | chr8.3:14586521-14586540 | MS.gene038788:intron | 15.0% |
| !!! | TTTTACACTATTTTTTGTTT+TGG | + | chr8.3:14586453-14586472 | None:intergenic | 15.0% |
| !! | AAAAGTAAAATCATATGCAA+TGG | + | chr8.3:14587039-14587058 | None:intergenic | 20.0% |
| !! | AAAGTGAAATGAAATAAATG+TGG | + | chr8.3:14585768-14585787 | None:intergenic | 20.0% |
| !! | AATAATAACCAAATATCACT+AGG | + | chr8.3:14585046-14585065 | None:intergenic | 20.0% |
| !! | ACAAATATTATATACTCTGA+TGG | + | chr8.3:14584254-14584273 | None:intergenic | 20.0% |
| !! | AGACAGACATAAAATAAAAA+TGG | + | chr8.3:14585299-14585318 | None:intergenic | 20.0% |
| !! | ATAACTACTAAGAAATATGT+AGG | + | chr8.3:14586770-14586789 | None:intergenic | 20.0% |
| !! | ATATGCAATGTCTTTATAAT+TGG | - | chr8.3:14584063-14584082 | MS.gene038788:intron | 20.0% |
| !! | ATTCATAATCAAAATTACCA+TGG | + | chr8.3:14586343-14586362 | None:intergenic | 20.0% |
| !! | GGCAAATTTATATAATCTTA+TGG | + | chr8.3:14585218-14585237 | None:intergenic | 20.0% |
| !! | TACTATATGACTGTATATTA+TGG | + | chr8.3:14585181-14585200 | None:intergenic | 20.0% |
| !! | TTAATTTAGATTCAAATCTG+AGG | - | chr8.3:14585113-14585132 | MS.gene038788:intron | 20.0% |
| !!! | AAATTTTTTTTAGGCTGTTT+AGG | - | chr8.3:14585319-14585338 | MS.gene038788:intron | 20.0% |
| !!! | CAAGTATTCATACATTTTAA+AGG | + | chr8.3:14586427-14586446 | None:intergenic | 20.0% |
| !!! | CAATGGACAATTTTTTAAAT+GGG | - | chr8.3:14584501-14584520 | MS.gene038788:intron | 20.0% |
| !!! | CGAGTTTATTATTTTATTTC+AGG | - | chr8.3:14584805-14584824 | MS.gene038788:CDS | 20.0% |
| !!! | CTCTATTTTATTTGTTTCTA+GGG | - | chr8.3:14584594-14584613 | MS.gene038788:intron | 20.0% |
| !!! | GAGTTTCTTCTTTTATTTTA+GGG | - | chr8.3:14584850-14584869 | MS.gene038788:intron | 20.0% |
| !!! | GTATTGAGTAGTTAAATTTT+AGG | + | chr8.3:14585825-14585844 | None:intergenic | 20.0% |
| !!! | TGAGTTTCTTCTTTTATTTT+AGG | - | chr8.3:14584849-14584868 | MS.gene038788:intron | 20.0% |
| !!! | TGTCTGTCTAAATTTTTTTT+AGG | - | chr8.3:14585310-14585329 | MS.gene038788:intron | 20.0% |
| !!! | TTAGTTTGTGTTTTTAAATC+GGG | - | chr8.3:14586522-14586541 | MS.gene038788:intron | 20.0% |
| ! | AAACAGAAAAACATTAAGCT+GGG | + | chr8.3:14584392-14584411 | None:intergenic | 25.0% |
| ! | AAATTGGATGAGGTTATAAT+TGG | - | chr8.3:14584031-14584050 | MS.gene038788:intron | 25.0% |
| ! | AACTCATATTCAGAATCTTA+AGG | + | chr8.3:14584101-14584120 | None:intergenic | 25.0% |
| ! | AATTGGAATCAATTCGTTAT+CGG | - | chr8.3:14583996-14584015 | MS.gene038788:CDS | 25.0% |
| ! | ATACAGTCATATAGTATCTT+TGG | - | chr8.3:14585185-14585204 | MS.gene038788:intron | 25.0% |
| ! | CAGAGATAAATATGTATGTA+AGG | + | chr8.3:14586080-14586099 | None:intergenic | 25.0% |
| ! | CCATTTAAAAAATTGTCCAT+TGG | + | chr8.3:14584503-14584522 | None:intergenic | 25.0% |
| ! | CTGTATATTATGGTGATTTA+TGG | + | chr8.3:14585171-14585190 | None:intergenic | 25.0% |
| ! | GATCTTTAATCAATAAAGGA+TGG | + | chr8.3:14585857-14585876 | None:intergenic | 25.0% |
| ! | GTTTATAAATCTCATCTCAT+CGG | - | chr8.3:14585432-14585451 | MS.gene038788:intron | 25.0% |
| ! | TAATCGATCTAAAAACAAGA+CGG | + | chr8.3:14585239-14585258 | None:intergenic | 25.0% |
| ! | TATGTAGTGTTTATTGATCT+GGG | - | chr8.3:14586997-14587016 | MS.gene038788:intron | 25.0% |
| ! | TCAAGTATTCAGCATAAATA+CGG | + | chr8.3:14586369-14586388 | None:intergenic | 25.0% |
| ! | TCAATAAACGAAATCATATC+AGG | + | chr8.3:14586238-14586257 | None:intergenic | 25.0% |
| ! | TTTATATAACAGTTGTCGAA+AGG | - | chr8.3:14584475-14584494 | MS.gene038788:intron | 25.0% |
| !! | ACTCTACACTAACTTTTATT+TGG | + | chr8.3:14586482-14586501 | None:intergenic | 25.0% |
| !! | ATACTTTAAAAGCTGGTAAA+TGG | - | chr8.3:14587109-14587128 | MS.gene038788:intron | 25.0% |
| !! | ATATGATTTTCCTCAAGTTT+TGG | - | chr8.3:14584559-14584578 | MS.gene038788:intron | 25.0% |
| !! | CAAAGAGTGCAATTTAAAAA+CGG | + | chr8.3:14584190-14584209 | None:intergenic | 25.0% |
| !! | GTTACTGAATAAGATTTTGT+TGG | - | chr8.3:14585392-14585411 | MS.gene038788:intron | 25.0% |
| !! | TACTACTGTTTTGTGAAAAT+TGG | - | chr8.3:14584446-14584465 | MS.gene038788:intron | 25.0% |
| !! | TTAATGTTTTTCTGTTTGCA+AGG | - | chr8.3:14584395-14584414 | MS.gene038788:intron | 25.0% |
| !!! | AGTAGTTAAATTTTAGGTGT+TGG | + | chr8.3:14585819-14585838 | None:intergenic | 25.0% |
| !!! | CCAATGGACAATTTTTTAAA+TGG | - | chr8.3:14584500-14584519 | MS.gene038788:intron | 25.0% |
| !!! | CTCTACACTAACTTTTATTT+GGG | + | chr8.3:14586481-14586500 | None:intergenic | 25.0% |
| !!! | GCTCTATTTTATTTGTTTCT+AGG | - | chr8.3:14584593-14584612 | MS.gene038788:intron | 25.0% |
| !!! | TAGTTTGTGTTTTTAAATCG+GGG | - | chr8.3:14586523-14586542 | MS.gene038788:intron | 25.0% |
| !!! | TTTTTTGAGGGGAATTAAAA+TGG | - | chr8.3:14585011-14585030 | MS.gene038788:intron | 25.0% |
| AACTCAAATAAATCCCAGAT+GGG | + | chr8.3:14586901-14586920 | None:intergenic | 30.0% | |
| AAGTATTCAGCATAAATACG+GGG | + | chr8.3:14586367-14586386 | None:intergenic | 30.0% | |
| AATAACAGATAAGAACCAGA+TGG | + | chr8.3:14585566-14585585 | None:intergenic | 30.0% | |
| ACACCCCATTAAAATCTTTA+CGG | + | chr8.3:14586693-14586712 | None:intergenic | 30.0% | |
| AGAACACCAAGCTATTTATT+GGG | + | chr8.3:14586836-14586855 | None:intergenic | 30.0% | |
| AGTAAAATCATATGCAATGG+TGG | + | chr8.3:14587036-14587055 | None:intergenic | 30.0% | |
| ATCATATGGTATGTTATGGT+TGG | + | chr8.3:14585148-14585167 | None:intergenic | 30.0% | |
| ATGGATCATATGGTATGTTA+TGG | + | chr8.3:14585152-14585171 | None:intergenic | 30.0% | |
| ATGGTGATTTATGGATCATA+TGG | + | chr8.3:14585162-14585181 | None:intergenic | 30.0% | |
| ATGTAAACAAGCTATGCTTT+AGG | - | chr8.3:14585663-14585682 | MS.gene038788:CDS | 30.0% | |
| ATTAATTACAACCAGTTTGC+AGG | + | chr8.3:14586034-14586053 | None:intergenic | 30.0% | |
| CAAACAGAAAAACATTAAGC+TGG | + | chr8.3:14584393-14584412 | None:intergenic | 30.0% | |
| CAAGTATTCAGCATAAATAC+GGG | + | chr8.3:14586368-14586387 | None:intergenic | 30.0% | |
| CATTGTATCATTAAGAACCT+TGG | + | chr8.3:14585646-14585665 | None:intergenic | 30.0% | |
| CTATGTAGTGTTTATTGATC+TGG | - | chr8.3:14586996-14587015 | MS.gene038788:intron | 30.0% | |
| GATAAATATGTATGTAAGGC+AGG | + | chr8.3:14586076-14586095 | None:intergenic | 30.0% | |
| TATCGCCAAAGATATTACTA+TGG | + | chr8.3:14585268-14585287 | None:intergenic | 30.0% | |
| TCATATGGTATGTTATGGTT+GGG | + | chr8.3:14585147-14585166 | None:intergenic | 30.0% | |
| TGTTTAGGCTTACTAGATTA+CGG | - | chr8.3:14585334-14585353 | MS.gene038788:intron | 30.0% | |
| TTGATCTGTTAAATTGGATG+AGG | - | chr8.3:14584021-14584040 | MS.gene038788:intron | 30.0% | |
| ! | AACAAATAAAATAGAGCGCT+TGG | + | chr8.3:14584590-14584609 | None:intergenic | 30.0% |
| ! | ACGATCAGTATATCTTTTCA+GGG | - | chr8.3:14585090-14585109 | MS.gene038788:intron | 30.0% |
| ! | TAGATGTTTTACTTAGCTTC+AGG | - | chr8.3:14584285-14584304 | MS.gene038788:intron | 30.0% |
| !! | ACACCGTAAAGATTTTAATG+GGG | - | chr8.3:14586687-14586706 | MS.gene038788:intron | 30.0% |
| !! | AGATTTTAATGGGGTGTTTT+CGG | - | chr8.3:14586696-14586715 | MS.gene038788:intron | 30.0% |
| !! | CACACCGTAAAGATTTTAAT+GGG | - | chr8.3:14586686-14586705 | MS.gene038788:intron | 30.0% |
| !! | TTAATTTTAACAGACAGCAG+AGG | + | chr8.3:14586742-14586761 | None:intergenic | 30.0% |
| !!! | ATGTCGACAAATTTTTTCCA+TGG | - | chr8.3:14584936-14584955 | MS.gene038788:intron | 30.0% |
| !!! | ATTTTAGGTGTTGGAATGTT+TGG | + | chr8.3:14585810-14585829 | None:intergenic | 30.0% |
| !!! | GGTTTCAATTTTGACTATGA+AGG | + | chr8.3:14585747-14585766 | None:intergenic | 30.0% |
| !!! | TTTTATTTGTTTCTAGGGCA+TGG | - | chr8.3:14584599-14584618 | MS.gene038788:intron | 30.0% |
| AAACTCCCCAATAAATAGCT+TGG | - | chr8.3:14586827-14586846 | MS.gene038788:intron | 35.0% | |
| AAGCATTAGCAGAACAACAA+AGG | - | chr8.3:14587160-14587179 | MS.gene038788:intron | 35.0% | |
| ACATGTCTTAGTTATCTGCA+TGG | - | chr8.3:14584356-14584375 | MS.gene038788:intron | 35.0% | |
| AGATAACTAAGACATGTTGG+CGG | + | chr8.3:14584353-14584372 | None:intergenic | 35.0% | |
| CAGAACACCAAGCTATTTAT+TGG | + | chr8.3:14586837-14586856 | None:intergenic | 35.0% | |
| CTATCATGTTTCAAGCAACT+AGG | + | chr8.3:14584904-14584923 | None:intergenic | 35.0% | |
| GAACACCAAGCTATTTATTG+GGG | + | chr8.3:14586835-14586854 | None:intergenic | 35.0% | |
| GAACTCAAATAAATCCCAGA+TGG | + | chr8.3:14586902-14586921 | None:intergenic | 35.0% | |
| GCAGGAAAAGTTGAATAACA+GGG | + | chr8.3:14586016-14586035 | None:intergenic | 35.0% | |
| GTCTTTATAATTGGTGCAAC+AGG | - | chr8.3:14584072-14584091 | MS.gene038788:intron | 35.0% | |
| TATCGTGATGCTTGGAAAAT+TGG | - | chr8.3:14583979-14583998 | MS.gene038788:CDS | 35.0% | |
| TGCAGATAACTAAGACATGT+TGG | + | chr8.3:14584356-14584375 | None:intergenic | 35.0% | |
| TGCAGGAAAAGTTGAATAAC+AGG | + | chr8.3:14586017-14586036 | None:intergenic | 35.0% | |
| TTCTGTAGTTATGAGGAATG+AGG | - | chr8.3:14586852-14586871 | MS.gene038788:intron | 35.0% | |
| ! | ATAGTTTGTATCGTGATGCT+TGG | - | chr8.3:14583971-14583990 | MS.gene038788:CDS | 35.0% |
| ! | ATTCAACTTTTCCTGCAAAC+TGG | - | chr8.3:14586020-14586039 | MS.gene038788:intron | 35.0% |
| ! | ATTTTATGGTCTGGGAAACA+GGG | + | chr8.3:14585907-14585926 | None:intergenic | 35.0% |
| ! | CACGATCAGTATATCTTTTC+AGG | - | chr8.3:14585089-14585108 | MS.gene038788:intron | 35.0% |
| ! | CAGCAAGATACTTTAAAAGC+TGG | - | chr8.3:14587102-14587121 | MS.gene038788:intron | 35.0% |
| ! | GCACACCGTAAAGATTTTAA+TGG | - | chr8.3:14586685-14586704 | MS.gene038788:intron | 35.0% |
| ! | TTGATTTTCACATTTTCCCC+AGG | - | chr8.3:14586254-14586273 | MS.gene038788:intron | 35.0% |
| ! | TTTTTGTCATTGTTGCTGTC+AGG | + | chr8.3:14584655-14584674 | None:intergenic | 35.0% |
| !! | TGATTTTCCTCAAGTTTTGG+TGG | - | chr8.3:14584562-14584581 | MS.gene038788:intron | 35.0% |
| !!! | TGTTTTTAGATCGATTACGC+CGG | - | chr8.3:14585242-14585261 | MS.gene038788:intron | 35.0% |
| AAAGCTGGTAAATGGAGCAA+TGG | - | chr8.3:14587117-14587136 | MS.gene038788:intron | 40.0% | |
| ACAACAAAGGATGTTTGCAG+AGG | - | chr8.3:14587173-14587192 | MS.gene038788:intron | 40.0% | |
| ACCGTAACTGATGTGAAAGA+AGG | - | chr8.3:14585713-14585732 | MS.gene038788:intron | 40.0% | |
| AGCACTCGATCAATAGATCT+TGG | + | chr8.3:14584724-14584743 | None:intergenic | 40.0% | |
| ATAACAGTGCCCAAGATGTA+TGG | + | chr8.3:14585617-14585636 | None:intergenic | 40.0% | |
| CAAATGGGACCATACATCTT+GGG | - | chr8.3:14585605-14585624 | MS.gene038788:CDS | 40.0% | |
| CAATGAAGTATGTAGCAGAG+AGG | - | chr8.3:14585459-14585478 | MS.gene038788:intron | 40.0% | |
| CTATACGACACCAATTCCTA+AGG | + | chr8.3:14586661-14586680 | None:intergenic | 40.0% | |
| CTCTCTGCTACATACTTCAT+TGG | + | chr8.3:14585461-14585480 | None:intergenic | 40.0% | |
| GAACTCTCATTGACATTGTG+TGG | - | chr8.3:14586947-14586966 | MS.gene038788:intron | 40.0% | |
| GAATCATCAATAAGCTCTGC+AGG | + | chr8.3:14586579-14586598 | None:intergenic | 40.0% | |
| GATGGATAGCTTAAGTCGTT+AGG | + | chr8.3:14584236-14584255 | None:intergenic | 40.0% | |
| GATTTGCCAACGATATCCAT+GGG | + | chr8.3:14583873-14583892 | None:intergenic | 40.0% | |
| GCACTCGATCAATAGATCTT+GGG | + | chr8.3:14584723-14584742 | None:intergenic | 40.0% | |
| GCCAAAGATATTACTATGGC+CGG | + | chr8.3:14585264-14585283 | None:intergenic | 40.0% | |
| GCCTTCTTTCACATCAGTTA+CGG | + | chr8.3:14585717-14585736 | None:intergenic | 40.0% | |
| GGGAATTAAAATGGTTGCTG+TGG | - | chr8.3:14585020-14585039 | MS.gene038788:intron | 40.0% | |
| GTGGCTATTGAGAGACAATA+GGG | - | chr8.3:14586966-14586985 | MS.gene038788:intron | 40.0% | |
| TATGTAGCAGAGAGGACAAA+AGG | - | chr8.3:14585467-14585486 | MS.gene038788:intron | 40.0% | |
| TCAAATGGGACCATACATCT+TGG | - | chr8.3:14585604-14585623 | MS.gene038788:CDS | 40.0% | |
| TGCACAAAGATAACCCATCT+GGG | - | chr8.3:14586885-14586904 | MS.gene038788:intron | 40.0% | |
| TGTGGCTATTGAGAGACAAT+AGG | - | chr8.3:14586965-14586984 | MS.gene038788:intron | 40.0% | |
| TTGCACAAAGATAACCCATC+TGG | - | chr8.3:14586884-14586903 | MS.gene038788:intron | 40.0% | |
| ! | AGTGCACACATTTTATGGTC+TGG | + | chr8.3:14585916-14585935 | None:intergenic | 40.0% |
| ! | ATCTTGGGCACTGTTATGTT+TGG | - | chr8.3:14585620-14585639 | MS.gene038788:CDS | 40.0% |
| ! | ATTTGAGTTCACGAGTGTTC+TGG | - | chr8.3:14586912-14586931 | MS.gene038788:intron | 40.0% |
| ! | CATTTTATGGTCTGGGAAAC+AGG | + | chr8.3:14585908-14585927 | None:intergenic | 40.0% |
| ! | GTGCACACATTTTATGGTCT+GGG | + | chr8.3:14585915-14585934 | None:intergenic | 40.0% |
| ! | TCGTGAGTGCACACATTTTA+TGG | + | chr8.3:14585921-14585940 | None:intergenic | 40.0% |
| !! | CTTGGTGTTCTGTAGTTATG+AGG | - | chr8.3:14586845-14586864 | MS.gene038788:intron | 40.0% |
| !! | TCGGCGTTGATCTGTTAAAT+TGG | - | chr8.3:14584015-14584034 | MS.gene038788:intron | 40.0% |
| AGCATACGAACAACACAAGC+TGG | - | chr8.3:14586314-14586333 | MS.gene038788:intron | 45.0% | |
| ATGATAAACAGACCGCGTTG+AGG | - | chr8.3:14586549-14586568 | MS.gene038788:intron | 45.0% | |
| ATGGATCCCATGGATATCGT+TGG | - | chr8.3:14583864-14583883 | MS.gene038788:CDS | 45.0% | |
| ATTGCTCCAAAACAGCCAGA+TGG | - | chr8.3:14587222-14587241 | MS.gene038788:CDS | 45.0% | |
| CAGTTGTCGAAAGGAACCAA+TGG | - | chr8.3:14584484-14584503 | MS.gene038788:intron | 45.0% | |
| CGATTTGCCAACGATATCCA+TGG | + | chr8.3:14583874-14583893 | None:intergenic | 45.0% | |
| GCCGGCCATAGTAATATCTT+TGG | - | chr8.3:14585260-14585279 | MS.gene038788:intron | 45.0% | |
| GGATATCGTTGGCAAATCGA+AGG | - | chr8.3:14583875-14583894 | MS.gene038788:CDS | 45.0% | |
| TGATAAACAGACCGCGTTGA+GGG | - | chr8.3:14586550-14586569 | MS.gene038788:intron | 45.0% | |
| TGCTGTGGCCTAGTGATATT+TGG | - | chr8.3:14585035-14585054 | MS.gene038788:intron | 45.0% | |
| ! | AGACATGTTGGCGGATGTTT+AGG | + | chr8.3:14584344-14584363 | None:intergenic | 45.0% |
| ! | CTATTGATCGAGTGCTGTGT+AGG | - | chr8.3:14584728-14584747 | MS.gene038788:intron | 45.0% |
| !!! | ATCTGGCTGTTTTGGAGCAA+TGG | + | chr8.3:14587223-14587242 | None:intergenic | 45.0% |
| !!! | GGGAAAAGTGACGGATTTTG+AGG | + | chr8.3:14586615-14586634 | None:intergenic | 45.0% |
| !! | CAAAAAAAAAAAAAAAAAAA+CGG | + | chr8.3:14584152-14584171 | None:intergenic | 5.0% |
| ACAACACAAGCTGGAGACCA+TGG | - | chr8.3:14586323-14586342 | MS.gene038788:intron | 50.0% | |
| AGAGCCTTCAATACGTGCTC+AGG | + | chr8.3:14585502-14585521 | None:intergenic | 50.0% | |
| CAAAGTTCTGCACAGCCATC+TGG | - | chr8.3:14585548-14585567 | MS.gene038788:intron | 50.0% | |
| CAATGGAGCTGAGATGACTG+AGG | - | chr8.3:14587134-14587153 | MS.gene038788:intron | 50.0% | |
| CAGATGGCTGTGCAGAACTT+TGG | + | chr8.3:14585550-14585569 | None:intergenic | 50.0% | |
| CAGGACGAGGTAATATCTCG+TGG | + | chr8.3:14585945-14585964 | None:intergenic | 50.0% | |
| CTAAGGTCTCCACGTCGTTT+GGG | + | chr8.3:14586644-14586663 | None:intergenic | 50.0% | |
| GAAGATGCTTCGCTTCCCAA+AGG | - | chr8.3:14583897-14583916 | MS.gene038788:CDS | 50.0% | |
| GACGTGGAGACCTTAGGAAT+TGG | - | chr8.3:14586648-14586667 | MS.gene038788:intron | 50.0% | |
| GATAAACAGACCGCGTTGAG+GGG | - | chr8.3:14586551-14586570 | MS.gene038788:intron | 50.0% | |
| GCACGTATTGAAGGCTCTAC+AGG | - | chr8.3:14585504-14585523 | MS.gene038788:intron | 50.0% | |
| GGCACTGTTATGTTTGGCCA+AGG | - | chr8.3:14585626-14585645 | MS.gene038788:CDS | 50.0% | |
| TCCTGAAGCACAATAGCAGC+TGG | - | chr8.3:14585960-14585979 | MS.gene038788:intron | 50.0% | |
| TGCTATTGTGCTTCAGGACG+AGG | + | chr8.3:14585958-14585977 | None:intergenic | 50.0% | |
| TTTCCCCAGGTGCTTGGATT+TGG | - | chr8.3:14586267-14586286 | MS.gene038788:intron | 50.0% | |
| ! | CGAGAGAGAAGCGTACCTTT+GGG | + | chr8.3:14583915-14583934 | None:intergenic | 50.0% |
| ! | TCACATTTTCCCCAGGTGCT+TGG | - | chr8.3:14586261-14586280 | MS.gene038788:intron | 50.0% |
| ! | TCGAGAGAGAAGCGTACCTT+TGG | + | chr8.3:14583916-14583935 | None:intergenic | 50.0% |
| ! | TGGTCACCATCTGGCTGTTT+TGG | + | chr8.3:14587231-14587250 | None:intergenic | 50.0% |
| !! | CTTGGTGCCACCAAAACTTG+AGG | + | chr8.3:14584572-14584591 | None:intergenic | 50.0% |
| !! | TTAATGGGGTGTTTTCGGCG+TGG | - | chr8.3:14586701-14586720 | MS.gene038788:intron | 50.0% |
| ACTCGCCAAATCCAAGCACC+TGG | + | chr8.3:14586275-14586294 | None:intergenic | 55.0% | |
| CCAAACGACGTGGAGACCTT+AGG | - | chr8.3:14586642-14586661 | MS.gene038788:intron | 55.0% | |
| CCTAAGGTCTCCACGTCGTT+TGG | + | chr8.3:14586645-14586664 | None:intergenic | 55.0% | |
| CTCGCCAAATCCAAGCACCT+GGG | + | chr8.3:14586274-14586293 | None:intergenic | 55.0% | |
| GCCAGCTGCTATTGTGCTTC+AGG | + | chr8.3:14585964-14585983 | None:intergenic | 55.0% | |
| GGGTTAGGCGGGAAAAGTGA+CGG | + | chr8.3:14586624-14586643 | None:intergenic | 55.0% | |
| TCGCCAAATCCAAGCACCTG+GGG | + | chr8.3:14586273-14586292 | None:intergenic | 55.0% | |
| TGCGCCTGAGCACGTATTGA+AGG | - | chr8.3:14585495-14585514 | MS.gene038788:intron | 55.0% | |
| ! | GTCTCCACGTCGTTTGGGTT+AGG | + | chr8.3:14586639-14586658 | None:intergenic | 55.0% |
| ! | TCCACGTCGTTTGGGTTAGG+CGG | + | chr8.3:14586636-14586655 | None:intergenic | 55.0% |
| CCCACCATTCATCCTAGCGC+GGG | + | chr8.3:14587199-14587218 | None:intergenic | 60.0% | |
| CCCCACCATTCATCCTAGCG+CGG | + | chr8.3:14587200-14587219 | None:intergenic | 60.0% | |
| CCCGCGCTAGGATGAATGGT+GGG | - | chr8.3:14587196-14587215 | MS.gene038788:intron | 60.0% | |
| CCGCGCTAGGATGAATGGTG+GGG | - | chr8.3:14587197-14587216 | MS.gene038788:intron | 60.0% | |
| GTTACCGCAAGATGTCCGCG+TGG | - | chr8.3:14584688-14584707 | MS.gene038788:intron | 60.0% | |
| ! | CCACGTCGTTTGGGTTAGGC+GGG | + | chr8.3:14586635-14586654 | None:intergenic | 60.0% |
| CCCGCCTAACCCAAACGACG+TGG | - | chr8.3:14586632-14586651 | MS.gene038788:intron | 65.0% | |
| CTCGCCACGCGGACATCTTG+CGG | + | chr8.3:14584695-14584714 | None:intergenic | 65.0% | |
| CTTGGGTGTCTCTCGCCACG+CGG | + | chr8.3:14584706-14584725 | None:intergenic | 65.0% | |
| GAGGCCCGCGCTAGGATGAA+TGG | - | chr8.3:14587192-14587211 | MS.gene038788:intron | 65.0% | |
| GCCCGCGCTAGGATGAATGG+TGG | - | chr8.3:14587195-14587214 | MS.gene038788:intron | 65.0% | |
| TCTGCAGGAGCCCCTCAACG+CGG | + | chr8.3:14586564-14586583 | None:intergenic | 65.0% | |
| TGTTTGCAGAGGCCCGCGCT+AGG | - | chr8.3:14587184-14587203 | MS.gene038788:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 14583864 | 14587257 | 14583864 | ID=MS.gene038788 |
| chr8.3 | mRNA | 14583864 | 14587257 | 14583864 | ID=MS.gene038788.t1;Parent=MS.gene038788 |
| chr8.3 | exon | 14587203 | 14587257 | 14587203 | ID=MS.gene038788.t1.exon1;Parent=MS.gene038788.t1 |
| chr8.3 | CDS | 14587203 | 14587257 | 14587203 | ID=cds.MS.gene038788.t1;Parent=MS.gene038788.t1 |
| chr8.3 | exon | 14586372 | 14586461 | 14586372 | ID=MS.gene038788.t1.exon2;Parent=MS.gene038788.t1 |
| chr8.3 | CDS | 14586372 | 14586461 | 14586372 | ID=cds.MS.gene038788.t1;Parent=MS.gene038788.t1 |
| chr8.3 | exon | 14585596 | 14585690 | 14585596 | ID=MS.gene038788.t1.exon3;Parent=MS.gene038788.t1 |
| chr8.3 | CDS | 14585596 | 14585690 | 14585596 | ID=cds.MS.gene038788.t1;Parent=MS.gene038788.t1 |
| chr8.3 | exon | 14584777 | 14584845 | 14584777 | ID=MS.gene038788.t1.exon4;Parent=MS.gene038788.t1 |
| chr8.3 | CDS | 14584777 | 14584845 | 14584777 | ID=cds.MS.gene038788.t1;Parent=MS.gene038788.t1 |
| chr8.3 | exon | 14583864 | 14584016 | 14583864 | ID=MS.gene038788.t1.exon5;Parent=MS.gene038788.t1 |
| chr8.3 | CDS | 14583864 | 14584016 | 14583864 | ID=cds.MS.gene038788.t1;Parent=MS.gene038788.t1 |
| Gene Sequence |
| Protein sequence |
