AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039438

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039438.t1 MTR_7g084150 96.744 215 7 0 18 232 59 273 1.25e-155 432
MS.gene039438.t1 MTR_3g082230 78.125 64 14 0 113 176 68 131 5.60e-27 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039438.t1 AT5G13440 81.567 217 40 0 16 232 58 274 9.27e-136 382
MS.gene039438.t1 AT5G13430 82.326 215 38 0 18 232 58 272 9.64e-136 382

Find 61 sgRNAs with CRISPR-Local

Find 147 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCTCATTATGATATTTC+TGG 0.147844 6.1:-37116275 MS.gene039438:CDS
ATGATATTTCTGGCAGAATT+AGG 0.242646 6.1:-37116265 MS.gene039438:CDS
CCGATCACAACGAGCCATTC+TGG 0.268480 6.1:+37116371 None:intergenic
GGTACCAACTTATTCATTCT+TGG 0.306788 6.1:-37116216 MS.gene039438:CDS
TGCATTCCCTTGCCAACTGC+TGG 0.310227 6.1:-37116329 MS.gene039438:CDS
GATCGGTGTTTGCACACATC+TGG 0.323690 6.1:-37116354 MS.gene039438:CDS
TTTGCATACTTTGTCCTAAC+AGG 0.338389 6.1:-37116656 MS.gene039438:CDS
TTGCCAACTGCTGGAGACTT+TGG 0.410327 6.1:-37116320 MS.gene039438:CDS
CCAACTGCTGGAGACTTTGG+TGG 0.416191 6.1:-37116317 MS.gene039438:CDS
GAAACAGTTGCGGGAATGTC+AGG 0.429531 6.1:+37116764 None:intergenic
GCCCTCTTGCTTGGATCACC+AGG 0.432947 6.1:+37116680 None:intergenic
TCATATACAATCTTCGAAGA+TGG 0.434814 6.1:+37116728 None:intergenic
TATGCAAATGCCCTCTTGCT+TGG 0.442545 6.1:+37116671 None:intergenic
AAGCAAACCTTCCACCTGTT+AGG 0.458122 6.1:+37116642 None:intergenic
CTGCTGGAGACTTTGGTGGA+TGG 0.458843 6.1:-37116313 MS.gene039438:CDS
GTGGAAAGCCAGTATTCATC+AGG 0.460050 6.1:-37116484 MS.gene039438:CDS
ACCTCCAGATTGTATGGTGC+AGG 0.460460 6.1:+37116236 None:intergenic
CGATCACAACGAGCCATTCT+GGG 0.462447 6.1:+37116372 None:intergenic
GCTCAGCATGTCCGCAAGTA+AGG 0.463109 6.1:-37116582 MS.gene039438:CDS
GTTGGTACCTCCAGATTGTA+TGG 0.471304 6.1:+37116230 None:intergenic
CAAACTTCAGAACAAGTAAA+CGG 0.472112 6.1:+37116606 None:intergenic
TTAACAGCGGAAACAGTTGC+GGG 0.473120 6.1:+37116755 None:intergenic
GTTCTGCGCCTGATGAATAC+TGG 0.484039 6.1:+37116476 None:intergenic
CACCAGGAGGAAACCGTTCA+TGG 0.490179 6.1:+37116696 None:intergenic
AGTAGTGCCTGGCTCAATGC+TGG 0.496319 6.1:+37116523 None:intergenic
ACCAACTTATTCATTCTTGG+AGG 0.499770 6.1:-37116213 MS.gene039438:CDS
AACAGATGACGATGTAAAGT+TGG 0.509863 6.1:-37116456 MS.gene039438:CDS
GGGACCTGCACCATACAATC+TGG 0.514167 6.1:-37116240 MS.gene039438:CDS
TCCTCCAAGAATGAATAAGT+TGG 0.514284 6.1:+37116212 None:intergenic
AAGTAAGGATGTTCTTGCTA+TGG 0.519506 6.1:-37116567 MS.gene039438:CDS
AACCATGAACGGTTTCCTCC+TGG 0.520987 6.1:-37116698 MS.gene039438:CDS
GAGGAAAACAAGTTGTTGAT+CGG 0.524976 6.1:-37116194 MS.gene039438:CDS
CCAGAATGGCTCGTTGTGAT+CGG 0.536344 6.1:-37116371 MS.gene039438:CDS
ATCGGTGTTTGCACACATCT+GGG 0.542075 6.1:-37116353 MS.gene039438:CDS
GAGAAAATATAAATATTGCC+AGG 0.548486 6.1:-37118488 MS.gene039438:CDS
GATCTGTCCAGCATTGAGCC+AGG 0.548945 6.1:-37116530 MS.gene039438:CDS
GCACTACTGTCACTGTTAAG+TGG 0.549316 6.1:-37116508 MS.gene039438:CDS
TATTTCTGGCAGAATTAGGA+AGG 0.553507 6.1:-37116261 MS.gene039438:CDS
AAAGTCTCCAGCAGTTGGCA+AGG 0.553573 6.1:+37116322 None:intergenic
CTATTTCAGAATCTTGCTGA+GGG 0.562505 6.1:+37116402 None:intergenic
CCACCAAAGTCTCCAGCAGT+TGG 0.564688 6.1:+37116317 None:intergenic
TTTAACAGCGGAAACAGTTG+CGG 0.565861 6.1:+37116754 None:intergenic
AAATAGTCAAGAACCCAGAA+TGG 0.576338 6.1:-37116385 MS.gene039438:CDS
TTAACAGTGACAGTAGTGCC+TGG 0.588903 6.1:+37116512 None:intergenic
ACTATTTCAGAATCTTGCTG+AGG 0.589422 6.1:+37116401 None:intergenic
TTGGCAAACAGTGTTGATGT+TGG 0.592547 6.1:-37116437 MS.gene039438:CDS
GCATACTTTGTCCTAACAGG+TGG 0.593488 6.1:-37116653 MS.gene039438:CDS
ACTGTCACTGTTAAGTGGCG+TGG 0.593737 6.1:-37116503 MS.gene039438:CDS
TCATAATGAGATCCATGACA+TGG 0.597841 6.1:+37116284 None:intergenic
AAGTCTCCAGCAGTTGGCAA+GGG 0.597916 6.1:+37116323 None:intergenic
ATGATGAACACAACCATGAA+CGG 0.601838 6.1:-37116709 MS.gene039438:CDS
ACTTTGTCCTAACAGGTGGA+AGG 0.607644 6.1:-37116649 MS.gene039438:CDS
ATATTGCCAGGATTATCCTA+AGG 0.618840 6.1:-37118476 MS.gene039438:CDS
AGCAAGAACATCCTTACTTG+CGG 0.635054 6.1:+37116571 None:intergenic
ATTTCTGGCAGAATTAGGAA+GGG 0.638657 6.1:-37116260 MS.gene039438:CDS
CTCCTGGTGATCCAAGCAAG+AGG 0.642258 6.1:-37116682 MS.gene039438:CDS
TCCTGGTGATCCAAGCAAGA+GGG 0.654973 6.1:-37116681 MS.gene039438:CDS
CATAATGAGATCCATGACAT+GGG 0.657346 6.1:+37116285 None:intergenic
CTCTTGCTTGGATCACCAGG+AGG 0.672619 6.1:+37116683 None:intergenic
ACCTGCACCATACAATCTGG+AGG 0.685674 6.1:-37116237 MS.gene039438:CDS
AACAAGTAAACGGATCAGAG+AGG 0.719387 6.1:+37116616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAATTATTTATTTATTT+TGG - chr6.1:37117114-37117133 MS.gene039438:intron 0.0%
!!! AAATTATTTATTTATTTTGG+TGG - chr6.1:37117117-37117136 MS.gene039438:intron 10.0%
!!! AAGTTCTTTTTTTTTTTTTT+GGG - chr6.1:37116476-37116495 MS.gene039438:CDS 10.0%
!!! AAGTTTTATTTTATTCAATT+TGG - chr6.1:37116801-37116820 MS.gene039438:CDS 10.0%
!!! ATTTATATTTTTATCTAACT+AGG - chr6.1:37117808-37117827 MS.gene039438:intron 10.0%
!!! TATAAAATTGATTTTTGATA+TGG - chr6.1:37117040-37117059 MS.gene039438:intron 10.0%
!!! TTTCTATTATCATTTTTATT+GGG - chr6.1:37116257-37116276 MS.gene039438:CDS 10.0%
!!! TTTTCTATTATCATTTTTAT+TGG - chr6.1:37116256-37116275 MS.gene039438:CDS 10.0%
!! AATCAAATTAAATCAATCAA+CGG + chr6.1:37117841-37117860 None:intergenic 15.0%
!! CAAAAAAAAAAAAAAGAACT+TGG + chr6.1:37116477-37116496 None:intergenic 15.0%
!! TAATTAAATCTAACAAAATC+TGG - chr6.1:37116880-37116899 MS.gene039438:intron 15.0%
!!! ATAACTTTATTTTGGAAAAA+TGG - chr6.1:37116769-37116788 MS.gene039438:CDS 15.0%
!!! CAAGTTCTTTTTTTTTTTTT+TGG - chr6.1:37116475-37116494 MS.gene039438:CDS 15.0%
!!! TGATAATGATAACTTTATTT+TGG - chr6.1:37116761-37116780 MS.gene039438:CDS 15.0%
!! AATGATATCCACATATAAAT+TGG + chr6.1:37116388-37116407 None:intergenic 20.0%
!! AATTATTCTATGTGTAGTTA+AGG - chr6.1:37117609-37117628 MS.gene039438:intron 20.0%
!! ATTATCTGGAAAAAAATAAC+AGG + chr6.1:37117015-37117034 None:intergenic 20.0%
!! CAAACATTCTAATTTACAAA+CGG + chr6.1:37117387-37117406 None:intergenic 20.0%
!!! AAGGAAAATTTTGTTAACAA+AGG - chr6.1:37116223-37116242 MS.gene039438:CDS 20.0%
!!! ATTGTTGATTAGATTGATTT+GGG - chr6.1:37117087-37117106 MS.gene039438:intron 20.0%
!!! TATTGTTGATTAGATTGATT+TGG - chr6.1:37117086-37117105 MS.gene039438:intron 20.0%
!!! TGATTTTTGATATGGTTTTA+TGG - chr6.1:37117048-37117067 MS.gene039438:intron 20.0%
!!! TTATTTTGGAAAAATGGTTT+TGG - chr6.1:37116775-37116794 MS.gene039438:CDS 20.0%
!!! TTGTTAACAAAATTTTCCTT+AGG + chr6.1:37116223-37116242 None:intergenic 20.0%
! AACAGAGGTAAATCATAAAA+TGG + chr6.1:37117545-37117564 None:intergenic 25.0%
! CACATAATCCAATTTATATG+TGG - chr6.1:37116377-37116396 MS.gene039438:CDS 25.0%
! GAGAAAATATAAATATTGCC+AGG - chr6.1:37116192-37116211 MS.gene039438:CDS 25.0%
! GTTCAACACCTTATAATAAA+TGG + chr6.1:37116567-37116586 None:intergenic 25.0%
! TAAAAAACTGCATGTTTAGT+TGG - chr6.1:37117437-37117456 MS.gene039438:intron 25.0%
! TCAAAAATAAACTACGCAAA+CGG + chr6.1:37116933-37116952 None:intergenic 25.0%
! TCAAAAATTAACTACGCAAA+CGG + chr6.1:37116991-37117010 None:intergenic 25.0%
! TGGTTATTGAATTGTTTAGT+TGG - chr6.1:37117457-37117476 MS.gene039438:intron 25.0%
!! ATCTAACATCCTTTTCTATA+CGG - chr6.1:37116536-37116555 MS.gene039438:CDS 25.0%
!! TTTTTGAATTGAGTTTCTGT+GGG - chr6.1:37117188-37117207 MS.gene039438:intron 25.0%
!!! ATTTTGGTGGTTTTTTTGTT+AGG - chr6.1:37117130-37117149 MS.gene039438:intron 25.0%
!!! TTTTGGTGGTTTTTTTGTTA+GGG - chr6.1:37117131-37117150 MS.gene039438:intron 25.0%
!!! TTTTTTGAATTGAGTTTCTG+TGG - chr6.1:37117187-37117206 MS.gene039438:intron 25.0%
AAAAAAGAACTTGGATCCAA+TGG + chr6.1:37116468-37116487 None:intergenic 30.0%
ACTAATCAAGAAAAATCCAG+AGG + chr6.1:37116957-37116976 None:intergenic 30.0%
AGTTGCATATTACCTTACTT+TGG - chr6.1:37117698-37117717 MS.gene039438:intron 30.0%
CAAACTTCAGAACAAGTAAA+CGG + chr6.1:37118077-37118096 None:intergenic 30.0%
CGGGTATTCCATTTATTATA+AGG - chr6.1:37116556-37116575 MS.gene039438:CDS 30.0%
GAAAGCTCAAAAGAATAGAT+CGG + chr6.1:37117635-37117654 None:intergenic 30.0%
GGATCTCATTATGATATTTC+TGG - chr6.1:37118405-37118424 MS.gene039438:intron 30.0%
GTTGCATATTACCTTACTTT+GGG - chr6.1:37117699-37117718 MS.gene039438:intron 30.0%
TCATATACAATCTTCGAAGA+TGG + chr6.1:37117955-37117974 None:intergenic 30.0%
TCTTAAAGATTGATGAACCT+CGG + chr6.1:37117317-37117336 None:intergenic 30.0%
TTGCATATTACCTTACTTTG+GGG - chr6.1:37117700-37117719 MS.gene039438:intron 30.0%
! AATTTTCCTTAGGATAATCC+TGG + chr6.1:37116213-37116232 None:intergenic 30.0%
! TCTAACATCCTTTTCTATAC+GGG - chr6.1:37116537-37116556 MS.gene039438:CDS 30.0%
!! ATGATATTTCTGGCAGAATT+AGG - chr6.1:37118415-37118434 MS.gene039438:intron 30.0%
!! GATTTAATTTGATTGCATCC+AGG - chr6.1:37117847-37117866 MS.gene039438:intron 30.0%
!!! GTAGTTTATTTTTGAACCTC+TGG - chr6.1:37116938-37116957 MS.gene039438:intron 30.0%
AAATAGTCAAGAACCCAGAA+TGG - chr6.1:37118295-37118314 MS.gene039438:intron 35.0%
AACAGATGACGATGTAAAGT+TGG - chr6.1:37118224-37118243 MS.gene039438:intron 35.0%
AAGTAAGGATGTTCTTGCTA+TGG - chr6.1:37118113-37118132 MS.gene039438:intron 35.0%
ACCAACTTATTCATTCTTGG+AGG - chr6.1:37118467-37118486 MS.gene039438:CDS 35.0%
ACTACTTGTCACAAAAGAGA+AGG + chr6.1:37116713-37116732 None:intergenic 35.0%
ACTATTTCAGAATCTTGCTG+AGG + chr6.1:37118282-37118301 None:intergenic 35.0%
ATATTGCCAGGATTATCCTA+AGG - chr6.1:37116204-37116223 MS.gene039438:CDS 35.0%
ATGATGAACACAACCATGAA+CGG - chr6.1:37117971-37117990 MS.gene039438:intron 35.0%
ATGGAATACCCGTATAGAAA+AGG + chr6.1:37116548-37116567 None:intergenic 35.0%
ATTGTGTGTATGCTATTCGT+TGG - chr6.1:37117743-37117762 MS.gene039438:intron 35.0%
CATAATGAGATCCATGACAT+GGG + chr6.1:37118398-37118417 None:intergenic 35.0%
CTATTTCAGAATCTTGCTGA+GGG + chr6.1:37118281-37118300 None:intergenic 35.0%
CTTAAAGATTGATGAACCTC+GGG + chr6.1:37117316-37117335 None:intergenic 35.0%
GAGGAAAACAAGTTGTTGAT+CGG - chr6.1:37118486-37118505 MS.gene039438:CDS 35.0%
GATCAAATGATACAGAACAG+AGG + chr6.1:37117560-37117579 None:intergenic 35.0%
GATTAGAAATCATGAAGCAC+GGG - chr6.1:37117275-37117294 MS.gene039438:intron 35.0%
GGATTAGAAATCATGAAGCA+CGG - chr6.1:37117274-37117293 MS.gene039438:intron 35.0%
GGTACCAACTTATTCATTCT+TGG - chr6.1:37118464-37118483 MS.gene039438:CDS 35.0%
TCATAATGAGATCCATGACA+TGG + chr6.1:37118399-37118418 None:intergenic 35.0%
TCCTCCAAGAATGAATAAGT+TGG + chr6.1:37118471-37118490 None:intergenic 35.0%
TGCATATTACCTTACTTTGG+GGG - chr6.1:37117701-37117720 MS.gene039438:intron 35.0%
TGGATTGAGATCTGTTTGTT+GGG - chr6.1:37117156-37117175 MS.gene039438:intron 35.0%
TTGGATTGAGATCTGTTTGT+TGG - chr6.1:37117155-37117174 MS.gene039438:intron 35.0%
TTGTGTGTATGCTATTCGTT+GGG - chr6.1:37117744-37117763 MS.gene039438:intron 35.0%
TTTGCATACTTTGTCCTAAC+AGG - chr6.1:37118024-37118043 MS.gene039438:intron 35.0%
!! ATTTCTGGCAGAATTAGGAA+GGG - chr6.1:37118420-37118439 MS.gene039438:intron 35.0%
!! CGAAGATGGATTTTTAACAG+CGG + chr6.1:37117941-37117960 None:intergenic 35.0%
!! TATTTCTGGCAGAATTAGGA+AGG - chr6.1:37118419-37118438 MS.gene039438:intron 35.0%
!!! GTGGTTTTTTTGTTAGGGTT+TGG - chr6.1:37117136-37117155 MS.gene039438:intron 35.0%
!!! TAATGCTGTTTTCTTCTGTG+TGG + chr6.1:37117894-37117913 None:intergenic 35.0%
AACAAGTAAACGGATCAGAG+AGG + chr6.1:37118067-37118086 None:intergenic 40.0%
AGCAAGAACATCCTTACTTG+CGG + chr6.1:37118112-37118131 None:intergenic 40.0%
GGGTTCTCTTCTTAAACCAT+TGG - chr6.1:37116449-37116468 MS.gene039438:CDS 40.0%
TTTAACAGCGGAAACAGTTG+CGG + chr6.1:37117929-37117948 None:intergenic 40.0%
! ATTACCTTACTTTGGGGGAT+CGG - chr6.1:37117706-37117725 MS.gene039438:intron 40.0%
! GGATTGAGATCTGTTTGTTG+GGG - chr6.1:37117157-37117176 MS.gene039438:intron 40.0%
!! TTGGCAAACAGTGTTGATGT+TGG - chr6.1:37118243-37118262 MS.gene039438:intron 40.0%
AAAACCGATCCCCCAAAGTA+AGG + chr6.1:37117713-37117732 None:intergenic 45.0%
AAGCAAACCTTCCACCTGTT+AGG + chr6.1:37118041-37118060 None:intergenic 45.0%
ACTTTGTCCTAACAGGTGGA+AGG - chr6.1:37118031-37118050 MS.gene039438:intron 45.0%
AGTGACTCAGTAGCAAAACC+TGG + chr6.1:37117868-37117887 None:intergenic 45.0%
GAAGCCATATCGATGCTTGT+GGG - chr6.1:37116429-37116448 MS.gene039438:CDS 45.0%
GCACTACTGTCACTGTTAAG+TGG - chr6.1:37118172-37118191 MS.gene039438:intron 45.0%
GCATACTTTGTCCTAACAGG+TGG - chr6.1:37118027-37118046 MS.gene039438:intron 45.0%
GTGGAAAGCCAGTATTCATC+AGG - chr6.1:37118196-37118215 MS.gene039438:intron 45.0%
GTTGGTACCTCCAGATTGTA+TGG + chr6.1:37118453-37118472 None:intergenic 45.0%
TAATCCTGAGATCCTGTAGC+TGG + chr6.1:37117260-37117279 None:intergenic 45.0%
TACCACTCAATGCGAGCTTA+AGG - chr6.1:37116849-37116868 MS.gene039438:intron 45.0%
TATGCAAATGCCCTCTTGCT+TGG + chr6.1:37118012-37118031 None:intergenic 45.0%
TGAAGCCATATCGATGCTTG+TGG - chr6.1:37116428-37116447 MS.gene039438:CDS 45.0%
TTAACAGCGGAAACAGTTGC+GGG + chr6.1:37117928-37117947 None:intergenic 45.0%
TTAACAGTGACAGTAGTGCC+TGG + chr6.1:37118171-37118190 None:intergenic 45.0%
! ATCGGTGTTTGCACACATCT+GGG - chr6.1:37118327-37118346 MS.gene039438:intron 45.0%
! CTCATGTCTGAAGCTTTGTG+TGG - chr6.1:37116608-37116627 MS.gene039438:CDS 45.0%
! TGTCTGAAGCTTTGTGTGGT+TGG - chr6.1:37116612-37116631 MS.gene039438:CDS 45.0%
!! AGAACCCACAAGCATCGATA+TGG + chr6.1:37116436-37116455 None:intergenic 45.0%
!!! AATTTTATAAAAAAATTATC+TGG + chr6.1:37117029-37117048 None:intergenic 5.0%
AAAGTCTCCAGCAGTTGGCA+AGG + chr6.1:37118361-37118380 None:intergenic 50.0%
AACCATGAACGGTTTCCTCC+TGG - chr6.1:37117982-37118001 MS.gene039438:intron 50.0%
AAGTCTCCAGCAGTTGGCAA+GGG + chr6.1:37118360-37118379 None:intergenic 50.0%
ACCTCCAGATTGTATGGTGC+AGG + chr6.1:37118447-37118466 None:intergenic 50.0%
ACCTGCACCATACAATCTGG+AGG - chr6.1:37118443-37118462 MS.gene039438:intron 50.0%
ACTGTCACTGTTAAGTGGCG+TGG - chr6.1:37118177-37118196 MS.gene039438:intron 50.0%
CCAGAATGGCTCGTTGTGAT+CGG - chr6.1:37118309-37118328 MS.gene039438:intron 50.0%
CGATCACAACGAGCCATTCT+GGG + chr6.1:37118311-37118330 None:intergenic 50.0%
GAAACAGTTGCGGGAATGTC+AGG + chr6.1:37117919-37117938 None:intergenic 50.0%
GTCCTTAAGCTCGCATTGAG+TGG + chr6.1:37116854-37116873 None:intergenic 50.0%
GTTCTGCGCCTGATGAATAC+TGG + chr6.1:37118207-37118226 None:intergenic 50.0%
TCCTGGTGATCCAAGCAAGA+GGG - chr6.1:37117999-37118018 MS.gene039438:intron 50.0%
TTGCCAACTGCTGGAGACTT+TGG - chr6.1:37118360-37118379 MS.gene039438:intron 50.0%
! GATCGGTGTTTGCACACATC+TGG - chr6.1:37118326-37118345 MS.gene039438:intron 50.0%
!! GGATGGTTTTGCCCATGTCA+TGG - chr6.1:37118384-37118403 MS.gene039438:intron 50.0%
AGTAGTGCCTGGCTCAATGC+TGG + chr6.1:37118160-37118179 None:intergenic 55.0%
ATGAACCTCGGGAGAACCGA+CGG + chr6.1:37117305-37117324 None:intergenic 55.0%
ATGAAGCACGGGACATCCGT+CGG - chr6.1:37117286-37117305 MS.gene039438:intron 55.0%
CACCAGGAGGAAACCGTTCA+TGG + chr6.1:37117987-37118006 None:intergenic 55.0%
CCAACTGCTGGAGACTTTGG+TGG - chr6.1:37118363-37118382 MS.gene039438:intron 55.0%
CCACCAAAGTCTCCAGCAGT+TGG + chr6.1:37118366-37118385 None:intergenic 55.0%
CCGATCACAACGAGCCATTC+TGG + chr6.1:37118312-37118331 None:intergenic 55.0%
CTCCTGGTGATCCAAGCAAG+AGG - chr6.1:37117998-37118017 MS.gene039438:intron 55.0%
CTCTTGCTTGGATCACCAGG+AGG + chr6.1:37118000-37118019 None:intergenic 55.0%
CTGCTGGAGACTTTGGTGGA+TGG - chr6.1:37118367-37118386 MS.gene039438:intron 55.0%
GCTCAGCATGTCCGCAAGTA+AGG - chr6.1:37118098-37118117 MS.gene039438:intron 55.0%
GGGACCTGCACCATACAATC+TGG - chr6.1:37118440-37118459 MS.gene039438:intron 55.0%
TCCTGAGATCCTGTAGCTGG+TGG + chr6.1:37117257-37117276 None:intergenic 55.0%
TGCATTCCCTTGCCAACTGC+TGG - chr6.1:37118351-37118370 MS.gene039438:intron 55.0%
! GATCTGTCCAGCATTGAGCC+AGG - chr6.1:37118150-37118169 MS.gene039438:intron 55.0%
CTGCAGTGCACTCAGTCCAC+CGG - chr6.1:37117231-37117250 MS.gene039438:intron 60.0%
GAGATCCTGTAGCTGGTGGC+CGG + chr6.1:37117253-37117272 None:intergenic 60.0%
GCCACCAGCTACAGGATCTC+AGG - chr6.1:37117253-37117272 MS.gene039438:intron 60.0%
GCCCTCTTGCTTGGATCACC+AGG + chr6.1:37118003-37118022 None:intergenic 60.0%
ATCCTGTAGCTGGTGGCCGG+TGG + chr6.1:37117250-37117269 None:intergenic 65.0%
!! GACATCCGTCGGTTCTCCCG+AGG - chr6.1:37117297-37117316 MS.gene039438:intron 65.0%
GTCCACCGGCCACCAGCTAC+AGG - chr6.1:37117245-37117264 MS.gene039438:intron 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 37116190 37118512 37116190 ID=MS.gene039438
chr6.1 mRNA 37116190 37118512 37116190 ID=MS.gene039438.t1;Parent=MS.gene039438
chr6.1 exon 37118458 37118512 37118458 ID=MS.gene039438.t1.exon1;Parent=MS.gene039438.t1
chr6.1 CDS 37118458 37118512 37118458 ID=cds.MS.gene039438.t1;Parent=MS.gene039438.t1
chr6.1 exon 37116190 37116833 37116190 ID=MS.gene039438.t1.exon2;Parent=MS.gene039438.t1
chr6.1 CDS 37116190 37116833 37116190 ID=cds.MS.gene039438.t1;Parent=MS.gene039438.t1
Gene Sequence

>MS.gene039438

ATGAGAAAATATAAATATTGCCAGGATTATCCTAAGGAAAATTTTGTTAACAAAGGTAAGCTTGTCTTTTCTATTATCATTTTTATTGGGAGTACTTTATTTCATGACTGATAATAATAATACTTATGTTAATTTACAATTTTCTAGTATATAGAGATTCAGTTTAGTCTTTGCATATGATTTGATTCACATAATCCAATTTATATGTGGATATCATTTACTACAAGTCTACATCTAATGAAGCCATATCGATGCTTGTGGGTTCTCTTCTTAAACCATTGGATCCAAGTTCTTTTTTTTTTTTTTGGGTGAAAAGTACAAATTTCTATACTTGTAAATGTTAATGATCTAACATCCTTTTCTATACGGGTATTCCATTTATTATAAGGTGTTGAACAAGTTTTTTTACTTTAATTTTCTCATGTCTGAAGCTTTGTGTGGTTGGAAATTAAGTAATTCAATGTTAGTAAGTTATCACATGTCTTAATTACATCTTTGTCTCTGAATCATGAAAATTGTACCTTCTCTTTTGTGACAAGTAGTATTATTTTTTAGCATTATTCTATTAACTTGATAATGATAACTTTATTTTGGAAAAATGGTTTTGGAGTAAGTTTTATTTTATTCAATTTGGTTTGCGTGTACTTGAAAGTATGAAGTACCACTCAATGCGAGCTTAAGGACTGAATTTAATTAAATCTAACAAAATCTGGATTTTTCTTTATTAGTTATATTTTGAACCGTTTGCGTAGTTTATTTTTGAACCTCTGGATTTTTCTTGATTAGTTATATTTTGAACCGTTTGCGTAGTTAATTTTTGAACCTGTTATTTTTTTCCAGATAATTTTTTTATAAAATTGATTTTTGATATGGTTTTATGGTTTAACATTTACTATTATTGTTGATTAGATTGATTTGGGATTTTTTAAATTATTTATTTATTTTGGTGGTTTTTTTGTTAGGGTTTGGATTGAGATCTGTTTGTTGGGGTTTTGAATTTTTTGAATTGAGTTTCTGTGGGCGTCTCATCAAAGAGTCTATCTGCAGTGCACTCAGTCCACCGGCCACCAGCTACAGGATCTCAGGATTAGAAATCATGAAGCACGGGACATCCGTCGGTTCTCCCGAGGTTCATCAATCTTTAAGACTTCAGTTTCGTTGAGCTTATAATGTAAACTCATATCGTAAATTTAACCGTTTGTAAATTAGAATGTTTGCGCTTTGAATTCTAGCTGAAATTTTTAAATTAAAAAACTGCATGTTTAGTTGGTTATTGAATTGTTTAGTTGGATTGACATGTTGTATGTATACTTGTTTAGTTGTATGTATATGTCGTAAGTTATCTATCTGTTCCATTTTATGATTTACCTCTGTTCTGTATCATTTGATCTATACTTCAAAACAATTTGTGTATGTAATAATTATTCTATGTGTAGTTAAGGCCGATCTATTCTTTTGAGCTTTCGATTCATACTTCATAGATCATAGATAATTGATTTGCAGATTGCAGTTGCATATTACCTTACTTTGGGGGATCGGTTTTATAGTTTCTAATTGTGTGTATGCTATTCGTTGGGTTGTGTGTTAGTATGAATGAAGCTTTTGTTTTCTTTACTCAATTTATATTTTTATCTAACTAGGTATAACTCCGTTGATTGATTTAATTTGATTGCATCCAGGTTTTGCTACTGAGTCACTGATCCACACAGAAGAAAACAGCATTATTCCTGACATTCCCGCAACTGTTTCCGCTGTTAAAAATCCATCTTCGAAGATTGTATATGATGAACACAACCATGAACGGTTTCCTCCTGGTGATCCAAGCAAGAGGGCATTTGCATACTTTGTCCTAACAGGTGGAAGGTTTGCTTATGCCTCTCTGATCCGTTTACTTGTTCTGAAGTTTGTGCTCAGCATGTCCGCAAGTAAGGATGTTCTTGCTATGGCTTCACTTGAAGTTGATCTGTCCAGCATTGAGCCAGGCACTACTGTCACTGTTAAGTGGCGTGGAAAGCCAGTATTCATCAGGCGCAGAACAGATGACGATGTAAAGTTGGCAAACAGTGTTGATGTTGGATCTCTTCGTGACCCTCAGCAAGATTCTGAAATAGTCAAGAACCCAGAATGGCTCGTTGTGATCGGTGTTTGCACACATCTGGGTTGCATTCCCTTGCCAACTGCTGGAGACTTTGGTGGATGGTTTTGCCCATGTCATGGATCTCATTATGATATTTCTGGCAGAATTAGGAAGGGACCTGCACCATACAATCTGGAGGTACCAACTTATTCATTCTTGGAGGAAAACAAGTTGTTGATCGGTTAA
Protein sequence

>MS.gene039438.t1

MRKYKYCQDYPKENFVNKGFATESLIHTEENSIIPDIPATVSAVKNPSSKIVYDEHNHERFPPGDPSKRAFAYFVLTGGRFAYASLIRLLVLKFVLSMSASKDVLAMASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTDDDVKLANSVDVGSLRDPQQDSEIVKNPEWLVVIGVCTHLGCIPLPTAGDFGGWFCPCHGSHYDISGRIRKGPAPYNLEVPTYSFLEENKLLIG