Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039544.t1 | AFK49677.1 | 95.5 | 288 | 13 | 0 | 1 | 288 | 1 | 288 | 9.20E-136 | 493.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039544.t1 | Q14919 | 56.8 | 88 | 38 | 0 | 2 | 89 | 5 | 92 | 1.2e-22 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039544.t1 | I3TAY5 | 95.5 | 288 | 13 | 0 | 1 | 288 | 1 | 288 | 6.7e-136 | 493.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039544.t1 | TF | NF-YC |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87743 | MS.gene039544 | PPI |
| MS.gene77045 | MS.gene039544 | PPI |
| MS.gene039544 | MS.gene42075 | PPI |
| MS.gene039544 | MS.gene82237 | PPI |
| MS.gene039544 | MS.gene48819 | PPI |
| MS.gene87064 | MS.gene039544 | PPI |
| MS.gene76728 | MS.gene039544 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039544.t1 | MTR_3g012030 | 98.201 | 278 | 5 | 0 | 1 | 278 | 1 | 278 | 0.0 | 528 |
| MS.gene039544.t1 | MTR_3g012030 | 98.084 | 261 | 5 | 0 | 18 | 278 | 1 | 261 | 6.52e-177 | 493 |
| MS.gene039544.t1 | MTR_3g012030 | 97.696 | 217 | 5 | 0 | 62 | 278 | 1 | 217 | 4.23e-142 | 403 |
| MS.gene039544.t1 | MTR_8g041420 | 69.896 | 289 | 70 | 6 | 1 | 273 | 1 | 288 | 1.84e-123 | 358 |
| MS.gene039544.t1 | MTR_5g088760 | 52.685 | 298 | 103 | 8 | 1 | 273 | 1 | 285 | 3.69e-66 | 212 |
| MS.gene039544.t1 | MTR_5g088760 | 51.220 | 287 | 102 | 8 | 12 | 273 | 3 | 276 | 9.40e-58 | 190 |
| MS.gene039544.t1 | MTR_5g088760 | 50.178 | 281 | 102 | 8 | 18 | 273 | 1 | 268 | 1.42e-53 | 179 |
| MS.gene039544.t1 | MTR_5g047770 | 85.393 | 89 | 13 | 0 | 171 | 259 | 54 | 142 | 3.44e-48 | 160 |
| MS.gene039544.t1 | MTR_2g023340 | 40.449 | 89 | 50 | 1 | 1 | 86 | 75 | 163 | 6.25e-12 | 65.5 |
| MS.gene039544.t1 | MTR_3g099180 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 8.83e-12 | 64.7 |
| MS.gene039544.t1 | MTR_3g099180 | 40.506 | 79 | 47 | 0 | 8 | 86 | 55 | 133 | 9.30e-12 | 64.3 |
| MS.gene039544.t1 | MTR_1g082660 | 39.744 | 78 | 47 | 0 | 9 | 86 | 102 | 179 | 1.14e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039544.t1 | AT3G12480 | 51.736 | 288 | 114 | 9 | 1 | 274 | 1 | 277 | 3.70e-77 | 240 |
| MS.gene039544.t1 | AT5G19490 | 63.504 | 137 | 42 | 4 | 1 | 136 | 1 | 130 | 9.37e-51 | 171 |
| MS.gene039544.t1 | AT1G54830 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 4.42e-12 | 65.5 |
| MS.gene039544.t1 | AT1G54830 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 4.42e-12 | 65.5 |
| MS.gene039544.t1 | AT1G54830 | 41.026 | 78 | 46 | 0 | 9 | 86 | 71 | 148 | 4.42e-12 | 65.5 |
| MS.gene039544.t1 | AT5G63470 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.84e-12 | 65.1 |
| MS.gene039544.t1 | AT5G63470 | 40.506 | 79 | 47 | 0 | 8 | 86 | 78 | 156 | 8.84e-12 | 65.1 |
| MS.gene039544.t1 | AT3G48590 | 40.506 | 79 | 47 | 0 | 8 | 86 | 65 | 143 | 9.58e-12 | 64.7 |
| MS.gene039544.t1 | AT1G08970 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 9.83e-12 | 64.7 |
| MS.gene039544.t1 | AT1G08970 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 9.83e-12 | 64.7 |
| MS.gene039544.t1 | AT1G08970 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 9.83e-12 | 64.7 |
| MS.gene039544.t1 | AT1G08970 | 41.026 | 78 | 46 | 0 | 9 | 86 | 81 | 158 | 9.83e-12 | 64.7 |
| MS.gene039544.t1 | AT1G56170 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 2.22e-11 | 63.2 |
| MS.gene039544.t1 | AT1G56170 | 41.026 | 78 | 46 | 0 | 9 | 86 | 77 | 154 | 2.22e-11 | 63.2 |
Find 87 sgRNAs with CRISPR-Local
Find 369 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGCAGGCTCAGGCAAT+GGG | 0.298692 | 3.1:+8404113 | None:intergenic |
| TACTGATGTTTCTGATAATC+AGG | 0.299184 | 3.1:-8402969 | MS.gene039544:CDS |
| AGGGGAAGAGGAAGGGGTAG+AGG | 0.303468 | 3.1:-8404409 | MS.gene039544:CDS |
| TTACAAATGCAATGCATTCA+TGG | 0.332233 | 3.1:+8405624 | None:intergenic |
| GGTATCAAGCTTCTTCTTCA+TGG | 0.333154 | 3.1:+8408405 | None:intergenic |
| AGCAACTCACAAACTAAAAC+AGG | 0.338422 | 3.1:+8405805 | None:intergenic |
| TGGACTTCGAACCTTCTCTT+TGG | 0.350657 | 3.1:+8404989 | None:intergenic |
| AGAGGCTAAGCGGAGTAAAA+TGG | 0.373594 | 3.1:-8404851 | MS.gene039544:intron |
| TGAAGACAGTGCAATCATAT+TGG | 0.375115 | 3.1:-8402900 | MS.gene039544:CDS |
| GTTGCAGCAGGCTCAGGCAA+TGG | 0.392246 | 3.1:+8404112 | None:intergenic |
| TTCTGATAATCAGGTTGAAA+AGG | 0.397944 | 3.1:-8402960 | MS.gene039544:CDS |
| TGGCATTCAGATCAATGTTT+CGG | 0.398272 | 3.1:+8404191 | None:intergenic |
| ACAAGTATGGCAATAGATAA+TGG | 0.399112 | 3.1:-8404277 | MS.gene039544:CDS |
| TTTGCTTGATCTATATACTT+AGG | 0.416364 | 3.1:+8402842 | None:intergenic |
| GTAGGAGACTTAGCAGGAAA+TGG | 0.416468 | 3.1:-8403079 | MS.gene039544:intron |
| AGAGGAAGAGGCCGCGGTCG+AGG | 0.425950 | 3.1:-8404391 | MS.gene039544:CDS |
| AGATTCAACCTGCTGATGTA+AGG | 0.427032 | 3.1:+8404345 | None:intergenic |
| AGACGTCCGCAATACAAGTA+TGG | 0.427604 | 3.1:-8404290 | MS.gene039544:CDS |
| AGAGGAAGGGGTAGAGGAAG+AGG | 0.428938 | 3.1:-8404403 | MS.gene039544:CDS |
| GCACTGTCTTCAAAGACAAC+AGG | 0.429994 | 3.1:+8402911 | None:intergenic |
| GTTTGATTACAGCTTGAGTT+GGG | 0.437970 | 3.1:-8404451 | MS.gene039544:intron |
| TCAGGCAATGGGGCCTGAGC+AGG | 0.439755 | 3.1:+8404124 | None:intergenic |
| CCACACTGGCGGTACTGGTA+GGG | 0.444180 | 3.1:-8404428 | MS.gene039544:CDS |
| AACTAGTAAGCTATTTCTCT+TGG | 0.445646 | 3.1:+8403012 | None:intergenic |
| TTGGGCCACACTGGCGGTAC+TGG | 0.449291 | 3.1:-8404433 | MS.gene039544:CDS |
| GGCGGTACTGGTAGGGGAAG+AGG | 0.449384 | 3.1:-8404421 | MS.gene039544:CDS |
| AAAACTTACAGCAGGGAAAC+GGG | 0.451379 | 3.1:+8408384 | None:intergenic |
| ATGCAACATGAAGAAATTCC+AGG | 0.456390 | 3.1:-8404082 | MS.gene039544:CDS |
| TGTTTGATTACAGCTTGAGT+TGG | 0.458715 | 3.1:-8404452 | MS.gene039544:intron |
| ACTGGTAGGGGAAGAGGAAG+GGG | 0.463619 | 3.1:-8404415 | MS.gene039544:CDS |
| GTAGAGTTATTTCATAAGTC+CGG | 0.468953 | 3.1:+8405662 | None:intergenic |
| ATAGCATTGTTGATTACAGC+AGG | 0.469492 | 3.1:-8402793 | MS.gene039544:CDS |
| TGCATATCTGTTGTTGCAGC+AGG | 0.476096 | 3.1:+8404100 | None:intergenic |
| AGGGGTAGAGGAAGAGGCCG+CGG | 0.479703 | 3.1:-8404397 | MS.gene039544:CDS |
| ATCATATTGGAGAAAAGTAA+TGG | 0.480919 | 3.1:-8402887 | MS.gene039544:CDS |
| TCATATTGGAGAAAAGTAAT+GGG | 0.492064 | 3.1:-8402886 | MS.gene039544:CDS |
| TCTGATAATCAGGTTGAAAA+GGG | 0.493896 | 3.1:-8402959 | MS.gene039544:CDS |
| AAGAGAAACCTTACATCAGC+AGG | 0.497349 | 3.1:-8404353 | MS.gene039544:CDS |
| GCCACACTGGCGGTACTGGT+AGG | 0.501008 | 3.1:-8404429 | MS.gene039544:CDS |
| GGACATGGCCATTCTGAGGC+TGG | 0.501930 | 3.1:-8405031 | MS.gene039544:CDS |
| CACACTGGCGGTACTGGTAG+GGG | 0.503334 | 3.1:-8404427 | MS.gene039544:CDS |
| TTCAAAGACAACAGGGATGA+TGG | 0.505223 | 3.1:+8402919 | None:intergenic |
| TCTGTTGTTGCAGCAGGCTC+AGG | 0.507661 | 3.1:+8404106 | None:intergenic |
| GAGGAAGAGGCCGCGGTCGA+GGG | 0.509630 | 3.1:-8404390 | MS.gene039544:CDS |
| TAGGAGACTTAGCAGGAAAT+GGG | 0.512309 | 3.1:-8403078 | MS.gene039544:CDS |
| CCATGTCCGTGGCTATAGTC+AGG | 0.512389 | 3.1:+8405046 | None:intergenic |
| CTGCAGCTTGCAGCAAACCT+TGG | 0.517052 | 3.1:-8404019 | MS.gene039544:intron |
| ATGCAAGCTGACGAGGATGT+TGG | 0.531354 | 3.1:-8405847 | MS.gene039544:CDS |
| CATCAGCGCCAGCCTCAGAA+TGG | 0.533148 | 3.1:+8405023 | None:intergenic |
| CCATCTTGTCGACATCAGAA+AGG | 0.538115 | 3.1:+8404053 | None:intergenic |
| AAGCACAGATATACCTGCTC+AGG | 0.539470 | 3.1:-8404137 | MS.gene039544:CDS |
| GGGCAACAAGAGTATAATCA+TGG | 0.547401 | 3.1:-8403058 | MS.gene039544:CDS |
| TACTGGTAGGGGAAGAGGAA+GGG | 0.550796 | 3.1:-8404416 | MS.gene039544:CDS |
| CCTTTCTGATGTCGACAAGA+TGG | 0.555115 | 3.1:-8404053 | MS.gene039544:CDS |
| CAGCTTGAGTTGGGCCACAC+TGG | 0.562286 | 3.1:-8404442 | MS.gene039544:CDS |
| CATCTTGTCGACATCAGAAA+GGG | 0.562835 | 3.1:+8404054 | None:intergenic |
| AGGAAGAGGCCGCGGTCGAG+GGG | 0.567783 | 3.1:-8404389 | MS.gene039544:CDS |
| ATAATCAGGTTGAAAAGGGT+GGG | 0.570259 | 3.1:-8402955 | MS.gene039544:CDS |
| CTATTGCCATACTTGTATTG+CGG | 0.574433 | 3.1:+8404284 | None:intergenic |
| AGATAATGGTTCAGAACCAA+AGG | 0.574615 | 3.1:-8404263 | MS.gene039544:CDS |
| TTTGAGAGACATTGTCAGCA+GGG | 0.585914 | 3.1:-8405071 | MS.gene039544:CDS |
| TTGCAATGACAGCGATGAAG+AGG | 0.586083 | 3.1:-8404869 | MS.gene039544:CDS |
| GATAATCAGGTTGAAAAGGG+TGG | 0.588220 | 3.1:-8402956 | MS.gene039544:CDS |
| ACATCAGAAAGGGACCAACC+TGG | 0.595072 | 3.1:+8404064 | None:intergenic |
| AACTGTGTAGGAGACTTAGC+AGG | 0.596754 | 3.1:-8403085 | MS.gene039544:intron |
| GTACTGGTAGGGGAAGAGGA+AGG | 0.602926 | 3.1:-8404417 | MS.gene039544:CDS |
| AGAACCAAAGGAGTTATCAA+AGG | 0.605334 | 3.1:-8404251 | MS.gene039544:CDS |
| ATCGTGCTGTTCCAAAGAGA+AGG | 0.608205 | 3.1:-8405000 | MS.gene039544:intron |
| CACTGTCTTCAAAGACAACA+GGG | 0.609094 | 3.1:+8402912 | None:intergenic |
| TGCAGCAGGCTCAGGCAATG+GGG | 0.617358 | 3.1:+8404114 | None:intergenic |
| CCACGGACATGGCCATTCTG+AGG | 0.617948 | 3.1:-8405035 | MS.gene039544:CDS |
| GAAGATAATGCAAGCTGACG+AGG | 0.619085 | 3.1:-8405854 | MS.gene039544:CDS |
| CCTGACTATAGCCACGGACA+TGG | 0.621947 | 3.1:-8405046 | MS.gene039544:CDS |
| CTTGAGTTGGGCCACACTGG+CGG | 0.626402 | 3.1:-8404439 | MS.gene039544:CDS |
| TAGCATTGTTGATTACAGCA+GGG | 0.626854 | 3.1:-8402792 | MS.gene039544:CDS |
| GTTTGCTGAATAGAAGTGCA+AGG | 0.627861 | 3.1:+8404319 | None:intergenic |
| AAATAGCTTACTAGTTCATG+TGG | 0.628773 | 3.1:-8403005 | MS.gene039544:CDS |
| GGATGTTGGAAAGATAGCAC+TGG | 0.629786 | 3.1:-8405833 | MS.gene039544:CDS |
| ATGTTTGCCAGGAAAGCTGC+TGG | 0.632479 | 3.1:-8404898 | MS.gene039544:intron |
| AGGGTTCCTGACTATAGCCA+CGG | 0.641831 | 3.1:-8405052 | MS.gene039544:CDS |
| AACATGAAGAAATTCCAGGT+TGG | 0.648140 | 3.1:-8404078 | MS.gene039544:CDS |
| CCTCAGAATGGCCATGTCCG+TGG | 0.649675 | 3.1:+8405035 | None:intergenic |
| CAGTTCGAGCCCCTCGACCG+CGG | 0.651823 | 3.1:+8404380 | None:intergenic |
| CCCTACCAGTACCGCCAGTG+TGG | 0.652289 | 3.1:+8404428 | None:intergenic |
| GCAACTCACAAACTAAAACA+GGG | 0.681922 | 3.1:+8405806 | None:intergenic |
| ACAGCGATGAAGAGGCTAAG+CGG | 0.705575 | 3.1:-8404861 | MS.gene039544:CDS |
| TATGAAATAACTCTACAGAG+AGG | 0.731792 | 3.1:-8405655 | MS.gene039544:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTATAAAATAAGTGATTT+TGG | - | chr3.1:8405864-8405883 | MS.gene039544:CDS | 10.0% |
| !!! | GATTATAATTTGAAATTTAT+AGG | - | chr3.1:8403803-8403822 | MS.gene039544:intron | 10.0% |
| !!! | TTATTTCTTTGTTAAATTTT+GGG | - | chr3.1:8405413-8405432 | MS.gene039544:intron | 10.0% |
| !! | AAAAACGAAAAATAATATCT+AGG | - | chr3.1:8407576-8407595 | MS.gene039544:intron | 15.0% |
| !! | CTTAAATAGATTATTTGAAA+AGG | + | chr3.1:8405253-8405272 | None:intergenic | 15.0% |
| !!! | AATTGAGCTTTTTTTAATTT+GGG | - | chr3.1:8402919-8402938 | MS.gene039544:CDS | 15.0% |
| !!! | GATGATAAATTGATAATTTA+GGG | - | chr3.1:8402945-8402964 | MS.gene039544:CDS | 15.0% |
| !!! | GTATTTTCTCAAATTATTAT+CGG | + | chr3.1:8403598-8403617 | None:intergenic | 15.0% |
| !!! | GTTATTTCTTTGTTAAATTT+TGG | - | chr3.1:8405412-8405431 | MS.gene039544:intron | 15.0% |
| !!! | TAATTGAGCTTTTTTTAATT+TGG | - | chr3.1:8402918-8402937 | MS.gene039544:CDS | 15.0% |
| !!! | TATTTTCTATATTTTTCTTG+AGG | - | chr3.1:8405603-8405622 | MS.gene039544:intron | 15.0% |
| !!! | TGATGATAAATTGATAATTT+AGG | - | chr3.1:8402944-8402963 | MS.gene039544:CDS | 15.0% |
| !! | AAAAATAATATCTAGGTGAT+GGG | - | chr3.1:8407583-8407602 | MS.gene039544:intron | 20.0% |
| !! | AAAAATTGTAAGAAACTAGA+AGG | - | chr3.1:8406660-8406679 | MS.gene039544:intron | 20.0% |
| !! | AATAAAAAGATAAAAGCTAC+TGG | + | chr3.1:8406224-8406243 | None:intergenic | 20.0% |
| !! | AATAATTTAAAGACAACAGT+TGG | - | chr3.1:8407837-8407856 | MS.gene039544:intron | 20.0% |
| !! | AATCATAAATGTATTCCAAT+AGG | + | chr3.1:8404821-8404840 | None:intergenic | 20.0% |
| !! | ACTTATTTGAATTTATCTAC+TGG | + | chr3.1:8406568-8406587 | None:intergenic | 20.0% |
| !! | ATCCTTCTTAACTATAAATA+AGG | - | chr3.1:8407541-8407560 | MS.gene039544:intron | 20.0% |
| !! | GATTTAATGATTAAGAATTG+AGG | - | chr3.1:8405688-8405707 | MS.gene039544:CDS | 20.0% |
| !! | TATTGACCTAATAGAAAATT+AGG | - | chr3.1:8403918-8403937 | MS.gene039544:intron | 20.0% |
| !! | TGGAATTTAGTAAAATTCAT+AGG | - | chr3.1:8403762-8403781 | MS.gene039544:intron | 20.0% |
| !! | TGTGATAAAAAATAATGTTC+TGG | + | chr3.1:8404460-8404479 | None:intergenic | 20.0% |
| !! | TGTTACAATTAGAAAGATAT+AGG | - | chr3.1:8404251-8404270 | MS.gene039544:CDS | 20.0% |
| !! | TTAAAAACGTCTTGATTATA+AGG | - | chr3.1:8407752-8407771 | MS.gene039544:intron | 20.0% |
| !! | TTAGATTTCACAAAACTAAA+GGG | + | chr3.1:8404293-8404312 | None:intergenic | 20.0% |
| !! | TTTAGATTTCACAAAACTAA+AGG | + | chr3.1:8404294-8404313 | None:intergenic | 20.0% |
| !! | TTTGTCTGAAAAAATTTACA+AGG | - | chr3.1:8407934-8407953 | MS.gene039544:intron | 20.0% |
| !!! | ATTGTTTTCATACAAGTTAT+AGG | - | chr3.1:8406461-8406480 | MS.gene039544:intron | 20.0% |
| !!! | ATTTAGTTTCATCACTTTTT+AGG | - | chr3.1:8407355-8407374 | MS.gene039544:intron | 20.0% |
| !!! | ATTTTTTATCACAAGGTTAT+AGG | - | chr3.1:8404467-8404486 | MS.gene039544:intron | 20.0% |
| !!! | GAACATTATTTTTTATCACA+AGG | - | chr3.1:8404460-8404479 | MS.gene039544:intron | 20.0% |
| !!! | TAATGAAAACATTAATTTGC+AGG | - | chr3.1:8405303-8405322 | MS.gene039544:intron | 20.0% |
| !!! | TGAGCTTTGTTTATTTATTT+GGG | - | chr3.1:8403199-8403218 | MS.gene039544:intron | 20.0% |
| !!! | TTCCTTATTTATAGTTAAGA+AGG | + | chr3.1:8407546-8407565 | None:intergenic | 20.0% |
| !!! | TTGAGCTTTGTTTATTTATT+TGG | - | chr3.1:8403198-8403217 | MS.gene039544:intron | 20.0% |
| !!! | TTTAGTTTCATCACTTTTTA+GGG | - | chr3.1:8407356-8407375 | MS.gene039544:intron | 20.0% |
| !!! | TTTTATAATTCGTAACAAAC+AGG | + | chr3.1:8405854-8405873 | None:intergenic | 20.0% |
| ! | AAATAATGTAATCAGAGAGA+TGG | - | chr3.1:8404584-8404603 | MS.gene039544:intron | 25.0% |
| ! | AATACATTTATGATTACACC+CGG | - | chr3.1:8404826-8404845 | MS.gene039544:intron | 25.0% |
| ! | ACATTTGATTCCCAATTATA+AGG | + | chr3.1:8406628-8406647 | None:intergenic | 25.0% |
| ! | ATCATATTGGAGAAAAGTAA+TGG | - | chr3.1:8408303-8408322 | MS.gene039544:intron | 25.0% |
| ! | ATTAGGATAATTCAAATGGA+AGG | + | chr3.1:8404171-8404190 | None:intergenic | 25.0% |
| ! | ATTCCCAATTATAAGGTTAT+AGG | + | chr3.1:8406621-8406640 | None:intergenic | 25.0% |
| ! | CTAATTGTAACAATCACAAA+AGG | + | chr3.1:8404243-8404262 | None:intergenic | 25.0% |
| ! | CTGTAAAAAAATCAAGACTA+AGG | + | chr3.1:8405471-8405490 | None:intergenic | 25.0% |
| ! | GAAAAATAATATCTAGGTGA+TGG | - | chr3.1:8407582-8407601 | MS.gene039544:intron | 25.0% |
| ! | GTATGTGTAACTTATACAAT+TGG | - | chr3.1:8404744-8404763 | MS.gene039544:intron | 25.0% |
| ! | TAAAAGCAGTGTATTTCATA+AGG | - | chr3.1:8406525-8406544 | MS.gene039544:intron | 25.0% |
| ! | TAAATGTATTCCAATAGGTT+TGG | + | chr3.1:8404816-8404835 | None:intergenic | 25.0% |
| ! | TAGATTTCACAAAACTAAAG+GGG | + | chr3.1:8404292-8404311 | None:intergenic | 25.0% |
| ! | TCATATTGGAGAAAAGTAAT+GGG | - | chr3.1:8408304-8408323 | MS.gene039544:intron | 25.0% |
| ! | TGATGGTTATCTTTGTAAAT+TGG | - | chr3.1:8407973-8407992 | MS.gene039544:intron | 25.0% |
| ! | TGTTAGTATCAAAATAAGTG+AGG | - | chr3.1:8404075-8404094 | MS.gene039544:CDS | 25.0% |
| ! | TTAAATGCAATTACATGTGT+CGG | - | chr3.1:8403147-8403166 | MS.gene039544:intron | 25.0% |
| ! | TTATTTCCATATGCTCATTA+GGG | + | chr3.1:8406503-8406522 | None:intergenic | 25.0% |
| ! | TTCAAGTAATTGGGATAATA+TGG | + | chr3.1:8404520-8404539 | None:intergenic | 25.0% |
| ! | TTTCATATATGGATAACTGT+AGG | + | chr3.1:8404781-8404800 | None:intergenic | 25.0% |
| ! | TTTGCTTGATCTATATACTT+AGG | + | chr3.1:8408351-8408370 | None:intergenic | 25.0% |
| !! | AAATTTTCCCAAAACTCTAT+TGG | + | chr3.1:8405822-8405841 | None:intergenic | 25.0% |
| !! | AATACTTGTTTAAGCCTTTT+TGG | - | chr3.1:8404023-8404042 | MS.gene039544:CDS | 25.0% |
| !! | AATTGATAATTTAGGGTTTC+TGG | - | chr3.1:8402952-8402971 | MS.gene039544:CDS | 25.0% |
| !! | AATTTTCCCAAAACTCTATT+GGG | + | chr3.1:8405821-8405840 | None:intergenic | 25.0% |
| !! | ACCTTAAATGTAAAGCATTT+GGG | - | chr3.1:8405779-8405798 | MS.gene039544:intron | 25.0% |
| !! | ATTGATAATTTAGGGTTTCT+GGG | - | chr3.1:8402953-8402972 | MS.gene039544:CDS | 25.0% |
| !! | CAAAGCAAACTTTTCATATA+TGG | + | chr3.1:8404792-8404811 | None:intergenic | 25.0% |
| !! | GGAATTTTTGTATGATTCAT+AGG | - | chr3.1:8403292-8403311 | MS.gene039544:intron | 25.0% |
| !! | TAAATGGATATTGTTGTTGT+AGG | - | chr3.1:8407381-8407400 | MS.gene039544:intron | 25.0% |
| !! | TATCTAAAATCTGCTTTGAA+TGG | + | chr3.1:8406008-8406027 | None:intergenic | 25.0% |
| !! | TGTATAGGTTTTCGATAAAA+GGG | + | chr3.1:8406371-8406390 | None:intergenic | 25.0% |
| !! | TTAGGTTTGATGATAATTGA+GGG | - | chr3.1:8403466-8403485 | MS.gene039544:intron | 25.0% |
| !! | TTGGGTTTGATGATAATTTA+GGG | - | chr3.1:8403217-8403236 | MS.gene039544:intron | 25.0% |
| !! | TTGTATAGGTTTTCGATAAA+AGG | + | chr3.1:8406372-8406391 | None:intergenic | 25.0% |
| !! | TTTGGGTTTGATGATAATTT+AGG | - | chr3.1:8403216-8403235 | MS.gene039544:intron | 25.0% |
| !! | TTTTATCGAAAACCTATACA+AGG | - | chr3.1:8406371-8406390 | MS.gene039544:intron | 25.0% |
| !!! | ATCACTTTTTAGGGTTTAAA+TGG | - | chr3.1:8407365-8407384 | MS.gene039544:intron | 25.0% |
| !!! | GGAATTTTAGTATGATTCAT+AGG | - | chr3.1:8403021-8403040 | MS.gene039544:CDS | 25.0% |
| !!! | TTTGTGTTGTTGTTTACTAT+TGG | + | chr3.1:8407803-8407822 | None:intergenic | 25.0% |
| AAAACAACAATGAAACCAAC+CGG | + | chr3.1:8407457-8407476 | None:intergenic | 30.0% | |
| AAATAGCTTACTAGTTCATG+TGG | - | chr3.1:8408185-8408204 | MS.gene039544:intron | 30.0% | |
| AAATATTTACAAACACCTCC+AGG | - | chr3.1:8407690-8407709 | MS.gene039544:intron | 30.0% | |
| AAGCTTCACTTCAAGTAATT+GGG | + | chr3.1:8404529-8404548 | None:intergenic | 30.0% | |
| ACAAGTATGGCAATAGATAA+TGG | - | chr3.1:8406913-8406932 | MS.gene039544:intron | 30.0% | |
| ACACACAATGGTAAGTTAAT+TGG | - | chr3.1:8407996-8408015 | MS.gene039544:intron | 30.0% | |
| ACCCAAATGCTTTACATTTA+AGG | + | chr3.1:8405783-8405802 | None:intergenic | 30.0% | |
| AGCACCTATAACCTTATAAT+TGG | - | chr3.1:8406614-8406633 | MS.gene039544:intron | 30.0% | |
| ATACCAGGCAAAGAAAAAAA+GGG | + | chr3.1:8407293-8407312 | None:intergenic | 30.0% | |
| ATACTTATGCTTTCTGATTG+AGG | + | chr3.1:8407523-8407542 | None:intergenic | 30.0% | |
| ATAGGTGCTTATGAATAAAG+AGG | + | chr3.1:8406603-8406622 | None:intergenic | 30.0% | |
| CAATTGAGCTTTGCTTATTT+GGG | - | chr3.1:8403670-8403689 | MS.gene039544:intron | 30.0% | |
| CTAGTACATGATTTACTTCT+TGG | - | chr3.1:8407418-8407437 | MS.gene039544:intron | 30.0% | |
| CTTATTTCCATATGCTCATT+AGG | + | chr3.1:8406504-8406523 | None:intergenic | 30.0% | |
| CTTCTATAACCATCTTCATT+CGG | + | chr3.1:8404620-8404639 | None:intergenic | 30.0% | |
| GAAATTCTGATAGAAAGTGA+TGG | - | chr3.1:8407956-8407975 | MS.gene039544:intron | 30.0% | |
| GAGCATTAGGATAATTCAAA+TGG | + | chr3.1:8404175-8404194 | None:intergenic | 30.0% | |
| GATTTAATGCTGTAGCAAAA+TGG | - | chr3.1:8404924-8404943 | MS.gene039544:intron | 30.0% | |
| GATTTACTTCTTGGTAAAGT+TGG | - | chr3.1:8407427-8407446 | MS.gene039544:intron | 30.0% | |
| GCACCTATAACCTTATAATT+GGG | - | chr3.1:8406615-8406634 | MS.gene039544:intron | 30.0% | |
| TATAATGACATGTGTCAATG+TGG | - | chr3.1:8403399-8403418 | MS.gene039544:intron | 30.0% | |
| TATACCAGGCAAAGAAAAAA+AGG | + | chr3.1:8407294-8407313 | None:intergenic | 30.0% | |
| TATGAAATAACTCTACAGAG+AGG | - | chr3.1:8405535-8405554 | MS.gene039544:intron | 30.0% | |
| TCAATTGAGCTTTGCTTATT+TGG | - | chr3.1:8403669-8403688 | MS.gene039544:intron | 30.0% | |
| TGGGAATCAAATGTTTATCT+CGG | - | chr3.1:8406634-8406653 | MS.gene039544:intron | 30.0% | |
| TTACAAATGCAATGCATTCA+TGG | + | chr3.1:8405569-8405588 | None:intergenic | 30.0% | |
| TTTGAATTATCCTAATGCTC+TGG | - | chr3.1:8404175-8404194 | MS.gene039544:CDS | 30.0% | |
| TTTGTAAATTGGACACACAA+TGG | - | chr3.1:8407984-8408003 | MS.gene039544:intron | 30.0% | |
| ! | AAACAAGTATTGCCAAATAG+CGG | + | chr3.1:8404014-8404033 | None:intergenic | 30.0% |
| ! | AAATGGATGACTATGTTTTG+TGG | - | chr3.1:8404941-8404960 | MS.gene039544:intron | 30.0% |
| ! | ATATCTCCCAATAGAGTTTT+GGG | - | chr3.1:8405812-8405831 | MS.gene039544:intron | 30.0% |
| ! | CACCTTAAATGTAAAGCATT+TGG | - | chr3.1:8405778-8405797 | MS.gene039544:intron | 30.0% |
| ! | CACTGTCCTAATTTTCTATT+AGG | + | chr3.1:8403927-8403946 | None:intergenic | 30.0% |
| ! | CATAAAACACTTTTGCAAAG+TGG | + | chr3.1:8404900-8404919 | None:intergenic | 30.0% |
| ! | CTGAAGTCTTTTATAAGTGT+AGG | - | chr3.1:8404656-8404675 | MS.gene039544:intron | 30.0% |
| ! | CTTAGGTTTGATGATAATTG+AGG | - | chr3.1:8403465-8403484 | MS.gene039544:intron | 30.0% |
| ! | GATGATAATTTAGGGTTTCT+AGG | - | chr3.1:8403225-8403244 | MS.gene039544:intron | 30.0% |
| ! | GTAGAGTTATTTCATAAGTC+CGG | + | chr3.1:8405531-8405550 | None:intergenic | 30.0% |
| ! | TACTGATGTTTCTGATAATC+AGG | - | chr3.1:8408221-8408240 | MS.gene039544:intron | 30.0% |
| ! | TATATCTCCCAATAGAGTTT+TGG | - | chr3.1:8405811-8405830 | MS.gene039544:intron | 30.0% |
| ! | TTGGGTTTGATGATAATTGA+CGG | - | chr3.1:8403688-8403707 | MS.gene039544:intron | 30.0% |
| ! | TTTAAGATATTGTCTGCCAA+TGG | - | chr3.1:8407478-8407497 | MS.gene039544:intron | 30.0% |
| !! | AAAACATTAATTTGCAGGCT+CGG | - | chr3.1:8405308-8405327 | MS.gene039544:intron | 30.0% |
| !! | AAATTTGCTAGTATCTACAC+AGG | + | chr3.1:8407324-8407343 | None:intergenic | 30.0% |
| !! | AACTAGTAAGCTATTTCTCT+TGG | + | chr3.1:8408181-8408200 | None:intergenic | 30.0% |
| !! | TACGATGGGTATGTTTTATT+GGG | - | chr3.1:8404128-8404147 | MS.gene039544:CDS | 30.0% |
| !! | TCTGATAATCAGGTTGAAAA+GGG | - | chr3.1:8408231-8408250 | MS.gene039544:intron | 30.0% |
| !! | TTCTGATAATCAGGTTGAAA+AGG | - | chr3.1:8408230-8408249 | MS.gene039544:intron | 30.0% |
| !! | TTTTCCTTTGATAACTCCTT+TGG | + | chr3.1:8406946-8406965 | None:intergenic | 30.0% |
| !! | TTTTGGGAAAATTTACTGTC+GGG | - | chr3.1:8405828-8405847 | MS.gene039544:CDS | 30.0% |
| !!! | AGTGTCACAGTTTTTTATAG+CGG | - | chr3.1:8403943-8403962 | MS.gene039544:intron | 30.0% |
| !!! | GTTTTGGGAAAATTTACTGT+CGG | - | chr3.1:8405827-8405846 | MS.gene039544:CDS | 30.0% |
| AAAAACTTACAGCAGGGAAA+CGG | + | chr3.1:8402810-8402829 | None:intergenic | 35.0% | |
| AAAGCTCAATTGAAACATGC+AGG | + | chr3.1:8403662-8403681 | None:intergenic | 35.0% | |
| AACACCAGCACAAGTAAAAT+CGG | + | chr3.1:8405667-8405686 | None:intergenic | 35.0% | |
| AACATGAAGAAATTCCAGGT+TGG | - | chr3.1:8407112-8407131 | MS.gene039544:intron | 35.0% | |
| AACTCAGAAGAGAAAACCAT+TGG | + | chr3.1:8407497-8407516 | None:intergenic | 35.0% | |
| AAGCAGAAAAAACTTACAGC+AGG | + | chr3.1:8402817-8402836 | None:intergenic | 35.0% | |
| AAGTAAAATCGGTCTATGCA+TGG | + | chr3.1:8405656-8405675 | None:intergenic | 35.0% | |
| AAGTGAGGAATGCATTCATT+GGG | - | chr3.1:8404090-8404109 | MS.gene039544:CDS | 35.0% | |
| AATTTCCGATTCTCATCTCT+CGG | - | chr3.1:8405718-8405737 | MS.gene039544:intron | 35.0% | |
| AATTTGGTAAAGTGGCATGA+TGG | - | chr3.1:8403509-8403528 | MS.gene039544:intron | 35.0% | |
| AGAACCAAAGGAGTTATCAA+AGG | - | chr3.1:8406939-8406958 | MS.gene039544:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr3.1:8405388-8405407 | None:intergenic | 35.0% | |
| AGCAGAAAAAACTTACAGCA+GGG | + | chr3.1:8402816-8402835 | None:intergenic | 35.0% | |
| AGGATCGTCTAATTCACAAA+CGG | + | chr3.1:8404223-8404242 | None:intergenic | 35.0% | |
| AGGGATCATTCATTTAGCAT+CGG | + | chr3.1:8407274-8407293 | None:intergenic | 35.0% | |
| AGTACATTGGTCATTATGCT+AGG | - | chr3.1:8407894-8407913 | MS.gene039544:intron | 35.0% | |
| ATGCAACATGAAGAAATTCC+AGG | - | chr3.1:8407108-8407127 | MS.gene039544:intron | 35.0% | |
| ATGTAATCAGAGAGATGGAT+TGG | - | chr3.1:8404589-8404608 | MS.gene039544:intron | 35.0% | |
| ATTGGGTTAACATACCTCTT+TGG | - | chr3.1:8404145-8404164 | MS.gene039544:CDS | 35.0% | |
| ATTTGGTAAAGTGGCATGAT+GGG | - | chr3.1:8403510-8403529 | MS.gene039544:intron | 35.0% | |
| CAAGCTTCACTTCAAGTAAT+TGG | + | chr3.1:8404530-8404549 | None:intergenic | 35.0% | |
| CATATATGGATAACTGTAGG+AGG | + | chr3.1:8404778-8404797 | None:intergenic | 35.0% | |
| CTAAGTAACCAAAGCTCAAT+TGG | + | chr3.1:8403450-8403469 | None:intergenic | 35.0% | |
| CTATTGCCATACTTGTATTG+CGG | + | chr3.1:8406909-8406928 | None:intergenic | 35.0% | |
| GATAATATGGAAAACGTGCA+AGG | + | chr3.1:8404507-8404526 | None:intergenic | 35.0% | |
| GATGATAATTGACGGTTTCT+GGG | - | chr3.1:8403696-8403715 | MS.gene039544:intron | 35.0% | |
| GCAACTCACAAACTAAAACA+GGG | + | chr3.1:8405387-8405406 | None:intergenic | 35.0% | |
| GGATGAAGAAGATTATGATG+AGG | - | chr3.1:8407209-8407228 | MS.gene039544:intron | 35.0% | |
| GTTTGATTACAGCTTGAGTT+GGG | - | chr3.1:8406739-8406758 | MS.gene039544:intron | 35.0% | |
| TAAGATACATGAAACGAACC+TGG | + | chr3.1:8407711-8407730 | None:intergenic | 35.0% | |
| TAAGGTGATCAGTTCATACT+TGG | + | chr3.1:8405765-8405784 | None:intergenic | 35.0% | |
| TAAGTGAGGAATGCATTCAT+TGG | - | chr3.1:8404089-8404108 | MS.gene039544:CDS | 35.0% | |
| TCTATAGCACTATAGTGTAG+AGG | - | chr3.1:8405079-8405098 | MS.gene039544:CDS | 35.0% | |
| TCTTGGTAAAGTTGGATTAC+CGG | - | chr3.1:8407435-8407454 | MS.gene039544:intron | 35.0% | |
| TGAAGAAGATTATGATGAGG+AGG | - | chr3.1:8407212-8407231 | MS.gene039544:intron | 35.0% | |
| TGAAGACAGTGCAATCATAT+TGG | - | chr3.1:8408290-8408309 | MS.gene039544:intron | 35.0% | |
| TGATGATAATTGACGGTTTC+TGG | - | chr3.1:8403695-8403714 | MS.gene039544:intron | 35.0% | |
| TGATGATAATTGAGGGTTAC+TGG | - | chr3.1:8403473-8403492 | MS.gene039544:intron | 35.0% | |
| TGCATTGCATTTGTAAGTTG+TGG | - | chr3.1:8405573-8405592 | MS.gene039544:intron | 35.0% | |
| TGGCATTCAGATCAATGTTT+CGG | + | chr3.1:8407002-8407021 | None:intergenic | 35.0% | |
| TGTTTGATTACAGCTTGAGT+TGG | - | chr3.1:8406738-8406757 | MS.gene039544:intron | 35.0% | |
| TTCCTGGCAAACATTCTTAA+CGG | + | chr3.1:8406286-8406305 | None:intergenic | 35.0% | |
| TTGCAAAGTGGAAAGAATGA+AGG | + | chr3.1:8404888-8404907 | None:intergenic | 35.0% | |
| TTGGTTAAACCGAATGAAGA+TGG | - | chr3.1:8404608-8404627 | MS.gene039544:intron | 35.0% | |
| TTTGCTTTGACCAAACCTAT+TGG | - | chr3.1:8404803-8404822 | MS.gene039544:intron | 35.0% | |
| ! | AATTTAGGGTTTCTAGGTTG+TGG | - | chr3.1:8403231-8403250 | MS.gene039544:intron | 35.0% |
| ! | AGATAATGGTTCAGAACCAA+AGG | - | chr3.1:8406927-8406946 | MS.gene039544:intron | 35.0% |
| ! | ATAGCATTGTTGATTACAGC+AGG | - | chr3.1:8408397-8408416 | MS.gene039544:CDS | 35.0% |
| ! | ATTTAGGGTTTCTAGGTTGT+GGG | - | chr3.1:8403232-8403251 | MS.gene039544:intron | 35.0% |
| ! | CAATTGAGCTTTGGTTACTT+AGG | - | chr3.1:8403448-8403467 | MS.gene039544:intron | 35.0% |
| ! | CTACGATGGGTATGTTTTAT+TGG | - | chr3.1:8404127-8404146 | MS.gene039544:CDS | 35.0% |
| ! | CTTCAAATTTCCAGAGCATT+AGG | + | chr3.1:8404188-8404207 | None:intergenic | 35.0% |
| ! | TAGCATTGTTGATTACAGCA+GGG | - | chr3.1:8408398-8408417 | MS.gene039544:CDS | 35.0% |
| ! | TCACGGATTGTAGGAAATAA+CGG | + | chr3.1:8405188-8405207 | None:intergenic | 35.0% |
| ! | TTTTGCAAGATCTTTGTGAC+CGG | - | chr3.1:8405509-8405528 | MS.gene039544:intron | 35.0% |
| ! | TTTTTCTTGAGGAAACCTTC+AGG | - | chr3.1:8405614-8405633 | MS.gene039544:intron | 35.0% |
| !! | ATAAGCACTTAGCCTTGTAT+AGG | + | chr3.1:8406386-8406405 | None:intergenic | 35.0% |
| !! | ATAATCAGGTTGAAAAGGGT+GGG | - | chr3.1:8408235-8408254 | MS.gene039544:intron | 35.0% |
| !! | TAGTGGGTTATTGATAACAC+TGG | + | chr3.1:8403858-8403877 | None:intergenic | 35.0% |
| !! | TTTTTAGTCATGATCGACGA+TGG | - | chr3.1:8406708-8406727 | MS.gene039544:intron | 35.0% |
| !!! | AGAGAACACATTTTTTTCCC+CGG | - | chr3.1:8407865-8407884 | MS.gene039544:intron | 35.0% |
| !!! | TTTTTTTACAGCGAAAGCTC+TGG | - | chr3.1:8405480-8405499 | MS.gene039544:intron | 35.0% |
| AAAACTTACAGCAGGGAAAC+GGG | + | chr3.1:8402809-8402828 | None:intergenic | 40.0% | |
| AAACCAACCAAGCACCAAAA+AGG | + | chr3.1:8404040-8404059 | None:intergenic | 40.0% | |
| AACCGTTAAGAATGTTTGCC+AGG | - | chr3.1:8406281-8406300 | MS.gene039544:intron | 40.0% | |
| AAGAGAAACCTTACATCAGC+AGG | - | chr3.1:8406837-8406856 | MS.gene039544:intron | 40.0% | |
| AAGCTACCCTAATGAGCATA+TGG | - | chr3.1:8406494-8406513 | MS.gene039544:intron | 40.0% | |
| AATTGGGTAGAGTGGTATGA+TGG | - | chr3.1:8403732-8403751 | MS.gene039544:intron | 40.0% | |
| AATTGGGTGGAATGTCATGA+TGG | - | chr3.1:8402990-8403009 | MS.gene039544:CDS | 40.0% | |
| ACCAATGCTGATAACTGTGT+AGG | - | chr3.1:8408093-8408112 | MS.gene039544:intron | 40.0% | |
| ACCCAGATGCAAATACACAA+CGG | + | chr3.1:8402872-8402891 | None:intergenic | 40.0% | |
| ACTCACATAGAGACCAATAC+CGG | - | chr3.1:8403550-8403569 | MS.gene039544:intron | 40.0% | |
| AGATTCAACCTGCTGATGTA+AGG | + | chr3.1:8406848-8406867 | None:intergenic | 40.0% | |
| AGTGAGGAATGCATTCATTG+GGG | - | chr3.1:8404091-8404110 | MS.gene039544:CDS | 40.0% | |
| ATTCAAATGGAAGGCCAAAG+AGG | + | chr3.1:8404162-8404181 | None:intergenic | 40.0% | |
| ATTGGGTAGAGTGGTATGAT+GGG | - | chr3.1:8403733-8403752 | MS.gene039544:intron | 40.0% | |
| ATTGGGTGGAATGTCATGAT+GGG | - | chr3.1:8402991-8403010 | MS.gene039544:CDS | 40.0% | |
| CACAAACAATTCACACCTGA+AGG | + | chr3.1:8405632-8405651 | None:intergenic | 40.0% | |
| CACTGTCTTCAAAGACAACA+GGG | + | chr3.1:8408281-8408300 | None:intergenic | 40.0% | |
| CAGAACAGTGTGATTCAACA+AGG | + | chr3.1:8405012-8405031 | None:intergenic | 40.0% | |
| CAGTGGTGAACACAAATTTC+AGG | - | chr3.1:8406061-8406080 | MS.gene039544:intron | 40.0% | |
| CATCTTGTCGACATCAGAAA+GGG | + | chr3.1:8407139-8407158 | None:intergenic | 40.0% | |
| CTAGTATCTACACAGGTCAT+TGG | + | chr3.1:8407317-8407336 | None:intergenic | 40.0% | |
| CTGAAATTTGTGTTCACCAC+TGG | + | chr3.1:8406063-8406082 | None:intergenic | 40.0% | |
| GAAGAGTAGCTAACACCTTA+AGG | - | chr3.1:8407234-8407253 | MS.gene039544:intron | 40.0% | |
| GAGACATGATTTCCACCTTA+AGG | + | chr3.1:8407252-8407271 | None:intergenic | 40.0% | |
| GCACTATAGTGTAGAGGAAT+TGG | - | chr3.1:8405085-8405104 | MS.gene039544:CDS | 40.0% | |
| GCAGTTTGCATCAGAATTTG+AGG | + | chr3.1:8404351-8404370 | None:intergenic | 40.0% | |
| GGTCAACAACATGAGAGAAA+AGG | + | chr3.1:8405450-8405469 | None:intergenic | 40.0% | |
| TACATGTGTCAATGTCGTGT+CGG | - | chr3.1:8403633-8403652 | MS.gene039544:intron | 40.0% | |
| TAGGAGACTTAGCAGGAAAT+GGG | - | chr3.1:8408112-8408131 | MS.gene039544:intron | 40.0% | |
| TCATGACTAAAAACTGCAGC+AGG | + | chr3.1:8406701-8406720 | None:intergenic | 40.0% | |
| TCCTACACAGTTATCAGCAT+TGG | + | chr3.1:8408097-8408116 | None:intergenic | 40.0% | |
| TGATCAGTTCATACTTGGCA+TGG | + | chr3.1:8405760-8405779 | None:intergenic | 40.0% | |
| TGCTAGCAAAACTGGAATAG+AGG | - | chr3.1:8403891-8403910 | MS.gene039544:intron | 40.0% | |
| TTATGATTACACCCGGAGTT+CGG | - | chr3.1:8404833-8404852 | MS.gene039544:intron | 40.0% | |
| TTCAAAGACAACAGGGATGA+TGG | + | chr3.1:8408274-8408293 | None:intergenic | 40.0% | |
| TTTGACCGAGAGATGAGAAT+CGG | + | chr3.1:8405726-8405745 | None:intergenic | 40.0% | |
| TTTGAGAGACATTGTCAGCA+GGG | - | chr3.1:8406119-8406138 | MS.gene039544:intron | 40.0% | |
| ! | AATTGAGGGTTACTGGTTGT+GGG | - | chr3.1:8403480-8403499 | MS.gene039544:intron | 40.0% |
| ! | AATTTAGGGTTTCTGGGTTG+TGG | - | chr3.1:8402959-8402978 | MS.gene039544:CDS | 40.0% |
| ! | ATTGACGGTTTCTGGGTTAT+CGG | - | chr3.1:8403703-8403722 | MS.gene039544:intron | 40.0% |
| ! | ATTTAGGGTTTCTGGGTTGT+GGG | - | chr3.1:8402960-8402979 | MS.gene039544:CDS | 40.0% |
| ! | GGGCAACAAGAGTATAATCA+TGG | - | chr3.1:8408132-8408151 | MS.gene039544:intron | 40.0% |
| ! | GTCTTCGTTTTCATGCAAGT+TGG | + | chr3.1:8407022-8407041 | None:intergenic | 40.0% |
| ! | GTTTGCTGAATAGAAGTGCA+AGG | + | chr3.1:8406874-8406893 | None:intergenic | 40.0% |
| ! | TAATTGAGGGTTACTGGTTG+TGG | - | chr3.1:8403479-8403498 | MS.gene039544:intron | 40.0% |
| ! | TACACAGTTATCAGCATTGG+TGG | + | chr3.1:8408094-8408113 | None:intergenic | 40.0% |
| ! | TGTTGTCAATCACGGATTGT+AGG | + | chr3.1:8405197-8405216 | None:intergenic | 40.0% |
| ! | TTGCAGCAAACCTTGGTAAT+AGG | - | chr3.1:8407178-8407197 | MS.gene039544:intron | 40.0% |
| ! | TTTAGGGTTTCTAGGTTGTG+GGG | - | chr3.1:8403233-8403252 | MS.gene039544:intron | 40.0% |
| !! | GATAATCAGGTTGAAAAGGG+TGG | - | chr3.1:8408234-8408253 | MS.gene039544:intron | 40.0% |
| !! | TAGACCGATTTTACTTGTGC+TGG | - | chr3.1:8405660-8405679 | MS.gene039544:CDS | 40.0% |
| !! | TTTTGAGAGACATTGTCAGC+AGG | - | chr3.1:8406118-8406137 | MS.gene039544:intron | 40.0% |
| !!! | GATCCCTTTTTTTCTTTGCC+TGG | - | chr3.1:8407287-8407306 | MS.gene039544:intron | 40.0% |
| !!! | GTTTAAGCCTTTTTGGTGCT+TGG | - | chr3.1:8404030-8404049 | MS.gene039544:CDS | 40.0% |
| !!! | TTTTGGTGCTTGGTTGGTTT+GGG | - | chr3.1:8404040-8404059 | MS.gene039544:CDS | 40.0% |
| !!! | TTTTTGGTGCTTGGTTGGTT+TGG | - | chr3.1:8404039-8404058 | MS.gene039544:CDS | 40.0% |
| AACTGTGTAGGAGACTTAGC+AGG | - | chr3.1:8408105-8408124 | MS.gene039544:intron | 45.0% | |
| AAGCACAGATATACCTGCTC+AGG | - | chr3.1:8407053-8407072 | MS.gene039544:intron | 45.0% | |
| AATTGGGTAGAGTGGCATGA+TGG | - | chr3.1:8403261-8403280 | MS.gene039544:intron | 45.0% | |
| ACACAGGTCATTGGTATACC+AGG | + | chr3.1:8407308-8407327 | None:intergenic | 45.0% | |
| ACCATGACGCTATAGCATAC+AGG | + | chr3.1:8403981-8404000 | None:intergenic | 45.0% | |
| AGACGTCCGCAATACAAGTA+TGG | - | chr3.1:8406900-8406919 | MS.gene039544:intron | 45.0% | |
| AGAGGCTAAGCGGAGTAAAA+TGG | - | chr3.1:8406339-8406358 | MS.gene039544:intron | 45.0% | |
| AGCAGATGTAGCGACAATAG+TGG | + | chr3.1:8403875-8403894 | None:intergenic | 45.0% | |
| ATTGGGTAGAGTGGCATGAT+GGG | - | chr3.1:8403262-8403281 | MS.gene039544:intron | 45.0% | |
| CACTGTTCTGCTTAGCCAAT+AGG | - | chr3.1:8405022-8405041 | MS.gene039544:CDS | 45.0% | |
| CCATCTTGTCGACATCAGAA+AGG | + | chr3.1:8407140-8407159 | None:intergenic | 45.0% | |
| CCTCATCTAGCCTATTACCA+AGG | + | chr3.1:8407191-8407210 | None:intergenic | 45.0% | |
| CCTTTCTGATGTCGACAAGA+TGG | - | chr3.1:8407137-8407156 | MS.gene039544:intron | 45.0% | |
| CGATGTATTAGTGTCGTGAC+CGG | + | chr3.1:8403356-8403375 | None:intergenic | 45.0% | |
| CGTGATTGACAACACTCAGT+GGG | - | chr3.1:8405203-8405222 | MS.gene039544:intron | 45.0% | |
| GAAGATAATGCAAGCTGACG+AGG | - | chr3.1:8405336-8405355 | MS.gene039544:intron | 45.0% | |
| GACAACACTTCCACTCCTAT+TGG | + | chr3.1:8405040-8405059 | None:intergenic | 45.0% | |
| GACATGTGCCAATTGAGCTT+TGG | - | chr3.1:8403439-8403458 | MS.gene039544:intron | 45.0% | |
| GACATGTGTCAATGTGGTGT+TGG | - | chr3.1:8403405-8403424 | MS.gene039544:intron | 45.0% | |
| GAGTAGCTAACACCTTAAGG+TGG | - | chr3.1:8407237-8407256 | MS.gene039544:intron | 45.0% | |
| GATACATGAAACGAACCTGG+AGG | + | chr3.1:8407708-8407727 | None:intergenic | 45.0% | |
| GCACTGTCTTCAAAGACAAC+AGG | + | chr3.1:8408282-8408301 | None:intergenic | 45.0% | |
| GCAGATGTAGCGACAATAGT+GGG | + | chr3.1:8403874-8403893 | None:intergenic | 45.0% | |
| GCCGTTGTGTATTTGCATCT+GGG | - | chr3.1:8402868-8402887 | MS.gene039544:CDS | 45.0% | |
| GCTACATCTGCTAGCAAAAC+TGG | - | chr3.1:8403883-8403902 | MS.gene039544:intron | 45.0% | |
| GGATGTTGGAAAGATAGCAC+TGG | - | chr3.1:8405357-8405376 | MS.gene039544:intron | 45.0% | |
| GGGGTGTGAATTTGGTAAAG+TGG | - | chr3.1:8403501-8403520 | MS.gene039544:intron | 45.0% | |
| GGTAAAGTTGGATTACCGGT+TGG | - | chr3.1:8407439-8407458 | MS.gene039544:intron | 45.0% | |
| GTAGGAGACTTAGCAGGAAA+TGG | - | chr3.1:8408111-8408130 | MS.gene039544:intron | 45.0% | |
| GTGATTGACAACACTCAGTG+GGG | - | chr3.1:8405204-8405223 | MS.gene039544:intron | 45.0% | |
| GTTAACCAAAACCCGAACTC+CGG | + | chr3.1:8404848-8404867 | None:intergenic | 45.0% | |
| TATGATTACACCCGGAGTTC+GGG | - | chr3.1:8404834-8404853 | MS.gene039544:intron | 45.0% | |
| TCCTGTATGCTATAGCGTCA+TGG | - | chr3.1:8403977-8403996 | MS.gene039544:intron | 45.0% | |
| TCTCATCTCTCGGTCAAAGA+CGG | - | chr3.1:8405728-8405747 | MS.gene039544:intron | 45.0% | |
| TGACCAATGTACTCTTCCTC+CGG | + | chr3.1:8407887-8407906 | None:intergenic | 45.0% | |
| TGATTGACAACACTCAGTGG+GGG | - | chr3.1:8405205-8405224 | MS.gene039544:intron | 45.0% | |
| TGCATATCTGTTGTTGCAGC+AGG | + | chr3.1:8407093-8407112 | None:intergenic | 45.0% | |
| TGCCGTTGTGTATTTGCATC+TGG | - | chr3.1:8402867-8402886 | MS.gene039544:CDS | 45.0% | |
| TGGACTTCGAACCTTCTCTT+TGG | + | chr3.1:8406204-8406223 | None:intergenic | 45.0% | |
| TGTGAGCTTAGTCTAACCAG+TGG | - | chr3.1:8406044-8406063 | MS.gene039544:intron | 45.0% | |
| TTAACCAAAACCCGAACTCC+GGG | + | chr3.1:8404847-8404866 | None:intergenic | 45.0% | |
| TTCTGCTTAGCCAATAGGAG+TGG | - | chr3.1:8405027-8405046 | MS.gene039544:CDS | 45.0% | |
| TTGCAATGACAGCGATGAAG+AGG | - | chr3.1:8406321-8406340 | MS.gene039544:intron | 45.0% | |
| ! | ATCGTGCTGTTCCAAAGAGA+AGG | - | chr3.1:8406190-8406209 | MS.gene039544:intron | 45.0% |
| ! | ATTGAGGGTTACTGGTTGTG+GGG | - | chr3.1:8403481-8403500 | MS.gene039544:intron | 45.0% |
| ! | CAATGTGTGAGTGTTGTGAC+CGG | + | chr3.1:8403572-8403591 | None:intergenic | 45.0% |
| ! | CCACTGAGTGTTGTCAATCA+CGG | + | chr3.1:8405205-8405224 | None:intergenic | 45.0% |
| ! | CCTTGGTAATAGGCTAGATG+AGG | - | chr3.1:8407188-8407207 | MS.gene039544:intron | 45.0% |
| ! | TTAGGGTTTCTAGGTTGTGG+GGG | - | chr3.1:8403234-8403253 | MS.gene039544:intron | 45.0% |
| ! | TTGACGGTTTCTGGGTTATC+GGG | - | chr3.1:8403704-8403723 | MS.gene039544:intron | 45.0% |
| ! | TTTAGGGTTTCTGGGTTGTG+GGG | - | chr3.1:8402961-8402980 | MS.gene039544:CDS | 45.0% |
| !! | AATGTCATGATGGGTGTGAC+TGG | - | chr3.1:8403000-8403019 | MS.gene039544:CDS | 45.0% |
| !! | AGTGGTATGATGGGTTTGAC+TGG | - | chr3.1:8403742-8403761 | MS.gene039544:intron | 45.0% |
| !! | GTGGAAGTGTTGTCAAACAG+TGG | - | chr3.1:8405046-8405065 | MS.gene039544:CDS | 45.0% |
| !! | TTTGGTGCTTGGTTGGTTTG+GGG | - | chr3.1:8404041-8404060 | MS.gene039544:CDS | 45.0% |
| !!! | AAGCCTTTTTGGTGCTTGGT+TGG | - | chr3.1:8404034-8404053 | MS.gene039544:CDS | 45.0% |
| !!! | GAACACATTTTTTTCCCCGG+AGG | - | chr3.1:8407868-8407887 | MS.gene039544:intron | 45.0% |
| ACAGCGATGAAGAGGCTAAG+CGG | - | chr3.1:8406329-8406348 | MS.gene039544:intron | 50.0% | |
| ACATCAGAAAGGGACCAACC+TGG | + | chr3.1:8407129-8407148 | None:intergenic | 50.0% | |
| ACCAATGTACTCTTCCTCCG+GGG | + | chr3.1:8407885-8407904 | None:intergenic | 50.0% | |
| AGGGTTCCTGACTATAGCCA+CGG | - | chr3.1:8406138-8406157 | MS.gene039544:intron | 50.0% | |
| ATCATCACCAGCAGCTTTCC+TGG | + | chr3.1:8406302-8406321 | None:intergenic | 50.0% | |
| ATGCAAGCTGACGAGGATGT+TGG | - | chr3.1:8405343-8405362 | MS.gene039544:intron | 50.0% | |
| ATGTTTGCCAGGAAAGCTGC+TGG | - | chr3.1:8406292-8406311 | MS.gene039544:intron | 50.0% | |
| ATTAGTGTCGTGACCGGTGT+CGG | + | chr3.1:8403350-8403369 | None:intergenic | 50.0% | |
| CCGTGATTGACAACACTCAG+TGG | - | chr3.1:8405202-8405221 | MS.gene039544:intron | 50.0% | |
| CGATGTGTCAGTGTTGTGAC+CGG | + | chr3.1:8403091-8403110 | None:intergenic | 50.0% | |
| CTGCTGTTGAGCTCTACGAT+GGG | - | chr3.1:8404114-8404133 | MS.gene039544:CDS | 50.0% | |
| GACCAATGTACTCTTCCTCC+GGG | + | chr3.1:8407886-8407905 | None:intergenic | 50.0% | |
| GGGTTATCGGGGTGTGAATT+GGG | - | chr3.1:8403716-8403735 | MS.gene039544:intron | 50.0% | |
| TACTGGTAGGGGAAGAGGAA+GGG | - | chr3.1:8406774-8406793 | MS.gene039544:intron | 50.0% | |
| TCTCACATAGACACCGACAC+CGG | - | chr3.1:8403334-8403353 | MS.gene039544:intron | 50.0% | |
| TGGGTTATCGGGGTGTGAAT+TGG | - | chr3.1:8403715-8403734 | MS.gene039544:intron | 50.0% | |
| TTGCCAAATAGCGGCGATAG+CGG | + | chr3.1:8404005-8404024 | None:intergenic | 50.0% | |
| ! | AGGTTGTGGGGGTGTGAATT+GGG | - | chr3.1:8403245-8403264 | MS.gene039544:intron | 50.0% |
| ! | GTGAGTGTTGTGACCGGTAT+TGG | + | chr3.1:8403566-8403585 | None:intergenic | 50.0% |
| ! | TAGGTTGTGGGGGTGTGAAT+TGG | - | chr3.1:8403244-8403263 | MS.gene039544:intron | 50.0% |
| ! | TGACGGTTTCTGGGTTATCG+GGG | - | chr3.1:8403705-8403724 | MS.gene039544:intron | 50.0% |
| ! | TGGTTGTGGGGGTGTGAATT+TGG | - | chr3.1:8403493-8403512 | MS.gene039544:intron | 50.0% |
| ! | TTAGGGTTTCTGGGTTGTGG+GGG | - | chr3.1:8402962-8402981 | MS.gene039544:CDS | 50.0% |
| ! | TTGAGGGTTACTGGTTGTGG+GGG | - | chr3.1:8403482-8403501 | MS.gene039544:intron | 50.0% |
| !! | AGTGGCATGATGGGTATGAC+TGG | - | chr3.1:8403271-8403290 | MS.gene039544:intron | 50.0% |
| !! | AGTGGCATGATGGGTGTGAT+TGG | - | chr3.1:8403519-8403538 | MS.gene039544:intron | 50.0% |
| !! | GTCGGTGTCGTGTTGGATAT+TGG | - | chr3.1:8403165-8403184 | MS.gene039544:intron | 50.0% |
| !! | TACATGTGTCGGTGTCGTGT+TGG | - | chr3.1:8403158-8403177 | MS.gene039544:intron | 50.0% |
| ACTGGTAGGGGAAGAGGAAG+GGG | - | chr3.1:8406775-8406794 | MS.gene039544:intron | 55.0% | |
| AGAGGAAGGGGTAGAGGAAG+AGG | - | chr3.1:8406787-8406806 | MS.gene039544:intron | 55.0% | |
| ATAGACACCGACACCGACAC+CGG | - | chr3.1:8403069-8403088 | MS.gene039544:CDS | 55.0% | |
| CCATGTCCGTGGCTATAGTC+AGG | + | chr3.1:8406147-8406166 | None:intergenic | 55.0% | |
| CCTGACTATAGCCACGGACA+TGG | - | chr3.1:8406144-8406163 | MS.gene039544:intron | 55.0% | |
| CTGCAGCTTGCAGCAAACCT+TGG | - | chr3.1:8407171-8407190 | MS.gene039544:intron | 55.0% | |
| GCTGCTGTTGAGCTCTACGA+TGG | - | chr3.1:8404113-8404132 | MS.gene039544:CDS | 55.0% | |
| GGGGTGTGAATTGGGTAGAG+TGG | - | chr3.1:8403253-8403272 | MS.gene039544:intron | 55.0% | |
| GTCAGTGTTGTGACCGGTGT+CGG | + | chr3.1:8403085-8403104 | None:intergenic | 55.0% | |
| ! | GGTTGTGGGGGGTGTGAATT+GGG | - | chr3.1:8402974-8402993 | MS.gene039544:CDS | 55.0% |
| ! | GTACTGGTAGGGGAAGAGGA+AGG | - | chr3.1:8406773-8406792 | MS.gene039544:intron | 55.0% |
| ! | TAGGGTTTCTGGGTTGTGGG+GGG | - | chr3.1:8402963-8402982 | MS.gene039544:CDS | 55.0% |
| ! | TCCCCGGAGGAAGAGTACAT+TGG | - | chr3.1:8407881-8407900 | MS.gene039544:intron | 55.0% |
| !! | TACACCCGGAGTTCGGGTTT+TGG | - | chr3.1:8404840-8404859 | MS.gene039544:intron | 55.0% |
| AGGGGAAGAGGAAGGGGTAG+AGG | - | chr3.1:8406781-8406800 | MS.gene039544:intron | 60.0% | |
| CATCAGCGCCAGCCTCAGAA+TGG | + | chr3.1:8406170-8406189 | None:intergenic | 60.0% | |
| CCACGGACATGGCCATTCTG+AGG | - | chr3.1:8406155-8406174 | MS.gene039544:intron | 60.0% | |
| CCTCAGAATGGCCATGTCCG+TGG | + | chr3.1:8406158-8406177 | None:intergenic | 60.0% | |
| ! | GGGTTGTGGGGGGTGTGAAT+TGG | - | chr3.1:8402973-8402992 | MS.gene039544:CDS | 60.0% |
| ! | GTGCCGCTATCGCCGCTATT+TGG | - | chr3.1:8403999-8404018 | MS.gene039544:intron | 60.0% |
| ! | TGTGGGGGGTGTGAATTGGG+TGG | - | chr3.1:8402977-8402996 | MS.gene039544:CDS | 60.0% |
| !! | CACACTGGCGGTACTGGTAG+GGG | - | chr3.1:8406763-8406782 | MS.gene039544:intron | 60.0% |
| !! | CAGCTTGAGTTGGGCCACAC+TGG | - | chr3.1:8406748-8406767 | MS.gene039544:intron | 60.0% |
| !! | CCACACTGGCGGTACTGGTA+GGG | - | chr3.1:8406762-8406781 | MS.gene039544:intron | 60.0% |
| !! | CTTGAGTTGGGCCACACTGG+CGG | - | chr3.1:8406751-8406770 | MS.gene039544:intron | 60.0% |
| !! | GGACATGGCCATTCTGAGGC+TGG | - | chr3.1:8406159-8406178 | MS.gene039544:intron | 60.0% |
| !! | GTTGTGACCGGTGTCGGTGT+CGG | + | chr3.1:8403079-8403098 | None:intergenic | 60.0% |
| AGGGGTAGAGGAAGAGGCCG+CGG | - | chr3.1:8406793-8406812 | MS.gene039544:intron | 65.0% | |
| CCCTACCAGTACCGCCAGTG+TGG | + | chr3.1:8406765-8406784 | None:intergenic | 65.0% | |
| TTGGGCCACACTGGCGGTAC+TGG | - | chr3.1:8406757-8406776 | MS.gene039544:intron | 65.0% | |
| !! | GCCACACTGGCGGTACTGGT+AGG | - | chr3.1:8406761-8406780 | MS.gene039544:intron | 65.0% |
| !! | GGCGGTACTGGTAGGGGAAG+AGG | - | chr3.1:8406769-8406788 | MS.gene039544:intron | 65.0% |
| AGAGGAAGAGGCCGCGGTCG+AGG | - | chr3.1:8406799-8406818 | MS.gene039544:intron | 70.0% | |
| AGGAAGAGGCCGCGGTCGAG+GGG | - | chr3.1:8406801-8406820 | MS.gene039544:intron | 70.0% | |
| CAGTTCGAGCCCCTCGACCG+CGG | + | chr3.1:8406813-8406832 | None:intergenic | 70.0% | |
| GAGGAAGAGGCCGCGGTCGA+GGG | - | chr3.1:8406800-8406819 | MS.gene039544:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 8402787 | 8408425 | 8402787 | ID=MS.gene039544 |
| chr3.1 | mRNA | 8402787 | 8408425 | 8402787 | ID=MS.gene039544.t1;Parent=MS.gene039544 |
| chr3.1 | exon | 8408393 | 8408425 | 8408393 | ID=MS.gene039544.t1.exon1;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8408393 | 8408425 | 8408393 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8405815 | 8405887 | 8405815 | ID=MS.gene039544.t1.exon2;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8405815 | 8405887 | 8405815 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8405628 | 8405721 | 8405628 | ID=MS.gene039544.t1.exon3;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8405628 | 8405721 | 8405628 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8405001 | 8405129 | 8405001 | ID=MS.gene039544.t1.exon4;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8405001 | 8405129 | 8405001 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8404852 | 8404909 | 8404852 | ID=MS.gene039544.t1.exon5;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8404852 | 8404909 | 8404852 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8404020 | 8404461 | 8404020 | ID=MS.gene039544.t1.exon6;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8404020 | 8404461 | 8404020 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| chr3.1 | exon | 8402787 | 8403097 | 8402787 | ID=MS.gene039544.t1.exon7;Parent=MS.gene039544.t1 |
| chr3.1 | CDS | 8402787 | 8403097 | 8402787 | ID=cds.MS.gene039544.t1;Parent=MS.gene039544.t1 |
| Gene Sequence |
| Protein sequence |
