Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040121.t1 | XP_024628620.1 | 88.9 | 271 | 21 | 1 | 228 | 498 | 1 | 262 | 2.00E-130 | 476.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040121.t1 | P29514 | 92.7 | 206 | 14 | 1 | 1 | 206 | 1 | 205 | 4.0e-111 | 403.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040121.t1 | G7JIQ3 | 84.9 | 271 | 32 | 1 | 228 | 498 | 1 | 262 | 2.5e-122 | 448.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene040121 | MS.gene90825 | PPI |
| MS.gene040121 | MS.gene97346 | PPI |
| MS.gene066439 | MS.gene040121 | PPI |
| MS.gene040121 | MS.gene029093 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040121.t1 | MTR_4g083510 | 84.871 | 271 | 32 | 1 | 228 | 498 | 1 | 262 | 4.54e-155 | 444 |
| MS.gene040121.t1 | MTR_8g107250 | 95.775 | 213 | 9 | 0 | 1 | 213 | 1 | 213 | 2.05e-149 | 435 |
| MS.gene040121.t1 | MTR_0867s0010 | 74.539 | 271 | 59 | 2 | 228 | 498 | 1 | 261 | 7.42e-127 | 372 |
| MS.gene040121.t1 | MTR_7g089120 | 89.671 | 213 | 21 | 1 | 1 | 213 | 1 | 212 | 7.81e-126 | 375 |
| MS.gene040121.t1 | MTR_4g019090 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 9.73e-123 | 367 |
| MS.gene040121.t1 | MTR_2g031310 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 1.12e-122 | 367 |
| MS.gene040121.t1 | MTR_4g019110 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 2.36e-122 | 366 |
| MS.gene040121.t1 | MTR_1g101130 | 88.263 | 213 | 24 | 1 | 1 | 213 | 1 | 212 | 6.54e-122 | 365 |
| MS.gene040121.t1 | MTR_4g094535 | 86.854 | 213 | 27 | 1 | 1 | 213 | 1 | 212 | 2.43e-121 | 363 |
| MS.gene040121.t1 | MTR_4g017630 | 85.714 | 217 | 30 | 1 | 1 | 217 | 1 | 216 | 3.01e-121 | 363 |
| MS.gene040121.t1 | MTR_8g098360 | 85.915 | 213 | 29 | 1 | 1 | 213 | 1 | 212 | 9.10e-121 | 362 |
| MS.gene040121.t1 | MTR_3g113970 | 84.722 | 216 | 28 | 2 | 1 | 213 | 1 | 214 | 8.34e-120 | 359 |
| MS.gene040121.t1 | MTR_4g063670 | 67.897 | 271 | 77 | 2 | 228 | 498 | 1 | 261 | 1.90e-115 | 343 |
| MS.gene040121.t1 | MTR_1g051185 | 59.779 | 271 | 74 | 2 | 228 | 498 | 1 | 236 | 9.01e-93 | 283 |
| MS.gene040121.t1 | MTR_3g069460 | 61.202 | 183 | 62 | 1 | 228 | 410 | 1 | 174 | 2.15e-71 | 225 |
| MS.gene040121.t1 | MTR_8g085980 | 47.115 | 208 | 109 | 1 | 1 | 207 | 1 | 208 | 2.24e-51 | 181 |
| MS.gene040121.t1 | MTR_3g110720 | 47.596 | 208 | 108 | 1 | 1 | 207 | 1 | 208 | 2.54e-51 | 181 |
| MS.gene040121.t1 | MTR_1g106005 | 46.635 | 208 | 110 | 1 | 1 | 207 | 1 | 208 | 5.24e-50 | 177 |
| MS.gene040121.t1 | MTR_4g097830 | 46.635 | 208 | 110 | 1 | 1 | 207 | 1 | 208 | 3.55e-49 | 175 |
| MS.gene040121.t1 | MTR_7g117050 | 33.660 | 306 | 179 | 10 | 2 | 286 | 3 | 305 | 3.74e-49 | 176 |
| MS.gene040121.t1 | MTR_7g085800 | 45.673 | 208 | 112 | 1 | 1 | 207 | 1 | 208 | 6.44e-49 | 175 |
| MS.gene040121.t1 | MTR_6g029190 | 45.455 | 209 | 112 | 1 | 1 | 207 | 1 | 209 | 5.06e-48 | 172 |
| MS.gene040121.t1 | MTR_7g088160 | 45.575 | 226 | 104 | 6 | 247 | 467 | 75 | 286 | 5.92e-48 | 171 |
| MS.gene040121.t1 | MTR_8g015750 | 64.828 | 145 | 34 | 2 | 354 | 498 | 1 | 128 | 9.02e-44 | 153 |
| MS.gene040121.t1 | MTR_2g041400 | 42.731 | 227 | 121 | 3 | 1 | 227 | 1 | 218 | 7.30e-43 | 157 |
| MS.gene040121.t1 | MTR_2g041670 | 42.731 | 227 | 121 | 3 | 1 | 227 | 1 | 218 | 1.34e-42 | 158 |
| MS.gene040121.t1 | MTR_7g107340 | 44.444 | 207 | 102 | 8 | 305 | 505 | 98 | 297 | 3.03e-36 | 137 |
| MS.gene040121.t1 | MTR_8g015740 | 57.983 | 119 | 38 | 2 | 200 | 318 | 24 | 130 | 8.20e-34 | 124 |
| MS.gene040121.t1 | MTR_2g023560 | 77.419 | 62 | 14 | 0 | 282 | 343 | 57 | 118 | 3.07e-26 | 103 |
| MS.gene040121.t1 | MTR_6g081150 | 37.179 | 156 | 56 | 5 | 306 | 459 | 40 | 155 | 5.89e-20 | 87.8 |
| MS.gene040121.t1 | MTR_7g114170 | 38.798 | 183 | 66 | 9 | 245 | 427 | 61 | 197 | 9.03e-20 | 90.1 |
| MS.gene040121.t1 | MTR_5g044920 | 77.551 | 49 | 2 | 1 | 270 | 318 | 17 | 56 | 8.37e-17 | 76.3 |
| MS.gene040121.t1 | MTR_5g066280 | 28.108 | 185 | 117 | 5 | 260 | 435 | 61 | 238 | 2.73e-11 | 65.5 |
| MS.gene040121.t1 | MTR_3g067785 | 28.108 | 185 | 117 | 5 | 260 | 435 | 61 | 238 | 2.99e-11 | 65.1 |
| MS.gene040121.t1 | MTR_4g026120 | 28.108 | 185 | 117 | 5 | 260 | 435 | 61 | 238 | 3.16e-11 | 65.1 |
| MS.gene040121.t1 | MTR_4g036435 | 28.108 | 185 | 117 | 5 | 260 | 435 | 61 | 238 | 3.16e-11 | 65.1 |
| MS.gene040121.t1 | MTR_3g450670 | 24.590 | 183 | 130 | 4 | 226 | 408 | 73 | 247 | 5.71e-11 | 64.7 |
| MS.gene040121.t1 | MTR_1g471070 | 24.590 | 183 | 130 | 4 | 226 | 408 | 73 | 247 | 5.71e-11 | 64.7 |
| MS.gene040121.t1 | MTR_4g013220 | 27.568 | 185 | 118 | 5 | 260 | 435 | 61 | 238 | 8.24e-11 | 63.9 |
| MS.gene040121.t1 | MTR_2g072860 | 26.250 | 160 | 111 | 3 | 249 | 408 | 31 | 183 | 9.52e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040121.t1 | AT5G12250 | 90.141 | 213 | 20 | 1 | 1 | 213 | 1 | 212 | 1.66e-126 | 377 |
| MS.gene040121.t1 | AT1G75780 | 86.854 | 213 | 28 | 0 | 1 | 213 | 1 | 213 | 4.81e-124 | 370 |
| MS.gene040121.t1 | AT1G20010 | 86.385 | 213 | 29 | 0 | 1 | 213 | 1 | 213 | 1.41e-122 | 366 |
| MS.gene040121.t1 | AT5G62700 | 87.324 | 213 | 26 | 1 | 1 | 213 | 1 | 212 | 6.56e-122 | 365 |
| MS.gene040121.t1 | AT5G62690 | 87.324 | 213 | 26 | 1 | 1 | 213 | 1 | 212 | 6.56e-122 | 365 |
| MS.gene040121.t1 | AT5G23860 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 7.25e-121 | 362 |
| MS.gene040121.t1 | AT5G23860 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 7.25e-121 | 362 |
| MS.gene040121.t1 | AT2G29550 | 87.793 | 213 | 25 | 1 | 1 | 213 | 1 | 212 | 1.19e-120 | 362 |
| MS.gene040121.t1 | AT5G44340 | 85.915 | 213 | 29 | 1 | 1 | 213 | 1 | 212 | 1.25e-120 | 361 |
| MS.gene040121.t1 | AT4G20890 | 84.977 | 213 | 31 | 1 | 1 | 213 | 1 | 212 | 5.34e-119 | 357 |
| MS.gene040121.t1 | AT4G14960 | 47.596 | 208 | 108 | 1 | 1 | 207 | 1 | 208 | 1.24e-51 | 181 |
| MS.gene040121.t1 | AT4G14960 | 47.596 | 208 | 108 | 1 | 1 | 207 | 1 | 208 | 3.20e-51 | 181 |
| MS.gene040121.t1 | AT5G19780 | 47.115 | 208 | 109 | 1 | 1 | 207 | 1 | 208 | 3.23e-51 | 181 |
| MS.gene040121.t1 | AT5G19770 | 47.115 | 208 | 109 | 1 | 1 | 207 | 1 | 208 | 3.23e-51 | 181 |
| MS.gene040121.t1 | AT1G64740 | 46.635 | 208 | 110 | 1 | 1 | 207 | 1 | 208 | 1.25e-50 | 179 |
| MS.gene040121.t1 | AT1G04820 | 47.115 | 208 | 109 | 1 | 1 | 207 | 1 | 208 | 2.20e-50 | 179 |
| MS.gene040121.t1 | AT1G50010 | 47.115 | 208 | 109 | 1 | 1 | 207 | 1 | 208 | 2.20e-50 | 179 |
| MS.gene040121.t1 | AT5G05620 | 33.987 | 306 | 178 | 10 | 2 | 286 | 3 | 305 | 8.94e-50 | 177 |
| MS.gene040121.t1 | AT3G61650 | 33.987 | 306 | 178 | 10 | 2 | 286 | 3 | 305 | 1.09e-49 | 177 |
| MS.gene040121.t1 | AT5G41220 | 37.037 | 216 | 114 | 7 | 271 | 472 | 202 | 409 | 1.54e-30 | 125 |
| MS.gene040121.t1 | AT5G41220 | 37.037 | 216 | 114 | 7 | 271 | 472 | 210 | 417 | 1.83e-30 | 125 |
| MS.gene040121.t1 | AT5G41220 | 37.037 | 216 | 114 | 7 | 271 | 472 | 260 | 467 | 1.98e-30 | 125 |
| MS.gene040121.t1 | AT5G41240 | 37.173 | 191 | 107 | 6 | 282 | 460 | 267 | 456 | 6.58e-26 | 112 |
| MS.gene040121.t1 | AT3G47680 | 35.714 | 196 | 114 | 6 | 257 | 450 | 23 | 208 | 4.74e-24 | 102 |
| MS.gene040121.t1 | AT1G66235 | 29.412 | 187 | 116 | 5 | 288 | 459 | 7 | 192 | 8.93e-16 | 78.2 |
Find 127 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCCAGACAACTTTGTATT+TGG | 0.135277 | 4.4:-338109 | MS.gene040121:CDS |
| ATCTTTCAAAGCATCAAATT+TGG | 0.164119 | 4.4:+336188 | None:intergenic |
| CAATCTCTTGATCATTTAAT+TGG | 0.210422 | 4.4:+336874 | None:intergenic |
| ACCCTTGGCAAAATTGTTTC+CGG | 0.241537 | 4.4:+338075 | None:intergenic |
| ATCAAATAGGAATAAAGTTC+TGG | 0.266102 | 4.4:-338327 | MS.gene040121:CDS |
| CCAACAAACTTTGAAATAGA+TGG | 0.279570 | 4.4:+336537 | None:intergenic |
| GCTGTCCGGACTGGCCCTTA+TGG | 0.282594 | 4.4:-338142 | MS.gene040121:CDS |
| CTGTCCGGACTGGCCCTTAT+GGG | 0.301471 | 4.4:-338141 | MS.gene040121:CDS |
| TTGGGAGGAGGAACAGGTTC+TGG | 0.310249 | 4.4:-337842 | MS.gene040121:CDS |
| CTTTGATCATTCCCAACAAT+TGG | 0.310977 | 4.4:+336672 | None:intergenic |
| TTCAGCTTCTGGAGCATATT+CGG | 0.312536 | 4.4:-336322 | MS.gene040121:CDS |
| TTCCCTATATATTGTCCTAT+AGG | 0.334914 | 4.4:+338274 | None:intergenic |
| AGAACAAAGAATTCAGCTTC+TGG | 0.340604 | 4.4:-336333 | MS.gene040121:CDS |
| TGTTCCCAGGGCAGTGTTGA+TGG | 0.352200 | 4.4:-338188 | MS.gene040121:CDS |
| CATCTATTTCAAAGTTTGTT+GGG | 0.369114 | 4.4:-336536 | MS.gene040121:CDS |
| GATGAACCGAAATGGCTTGC+AGG | 0.369514 | 4.4:-336381 | MS.gene040121:CDS |
| TCTTTCAAAGCATCAAATTT+GGG | 0.374468 | 4.4:+336189 | None:intergenic |
| TCTTTCGAGTTGTTGAAGTT+TGG | 0.377742 | 4.4:+338249 | None:intergenic |
| AGAAAACCAGAGGCACTTAA+AGG | 0.378046 | 4.4:-336582 | MS.gene040121:CDS |
| GACCCTATAGGACAATATAT+AGG | 0.378475 | 4.4:-338277 | MS.gene040121:CDS |
| AACTTTGTATTTGGACAGTC+TGG | 0.387089 | 4.4:-338100 | MS.gene040121:CDS |
| CACTCCTTGGGAGGAGGAAC+AGG | 0.387803 | 4.4:-337848 | MS.gene040121:CDS |
| AACACTTTCTGTTCACCAAT+TGG | 0.388308 | 4.4:-337702 | MS.gene040121:CDS |
| CATGCATTCTCAAGTGTGAA+TGG | 0.388314 | 4.4:+336417 | None:intergenic |
| ACACAACCTGCAAGCCATTT+CGG | 0.388495 | 4.4:+336375 | None:intergenic |
| CTCCGAGAGCGACAACATTT+CGG | 0.391789 | 4.4:-336475 | MS.gene040121:CDS |
| ACAACTGTGTCTGACACCTT+TGG | 0.397823 | 4.4:+337740 | None:intergenic |
| TCCTTCTTGTAATAAAGAAA+AGG | 0.399002 | 4.4:+337626 | None:intergenic |
| ATTTCAAAGGATCCAATTGT+TGG | 0.399370 | 4.4:-336684 | MS.gene040121:CDS |
| GGACAGTGTGGAAATCAAAT+AGG | 0.403184 | 4.4:-338340 | MS.gene040121:CDS |
| ATGAGAAGTTCATCCTCCTT+TGG | 0.406782 | 4.4:+336723 | None:intergenic |
| ACCCTATAGGACAATATATA+GGG | 0.408645 | 4.4:-338276 | MS.gene040121:CDS |
| GGCCGGAAAATCTGCCCATA+AGG | 0.410401 | 4.4:+338127 | None:intergenic |
| CTCTGTCTTTCCATCTCCAA+AGG | 0.410913 | 4.4:-337756 | MS.gene040121:CDS |
| GGTGGATTGTATTCGCTTGT+TGG | 0.416563 | 4.4:+336279 | None:intergenic |
| TCCCTATATATTGTCCTATA+GGG | 0.420121 | 4.4:+338275 | None:intergenic |
| GCAACTTTCCTTCATTATCA+AGG | 0.420974 | 4.4:+337654 | None:intergenic |
| ATTTCAAGTGTGCCACTCCT+TGG | 0.422331 | 4.4:-337861 | MS.gene040121:CDS |
| GGCTTGGAAACAATTAATCT+TGG | 0.423881 | 4.4:-336825 | MS.gene040121:CDS |
| TTTCAAGTGTGCCACTCCTT+GGG | 0.432378 | 4.4:-337860 | MS.gene040121:CDS |
| CCATCTATTTCAAAGTTTGT+TGG | 0.437206 | 4.4:-336537 | MS.gene040121:CDS |
| AATTGTTTCCAAGCCATCTT+GGG | 0.439909 | 4.4:+336833 | None:intergenic |
| CGTGAGATTCTTCACATTCA+AGG | 0.440464 | 4.4:-338364 | MS.gene040121:CDS |
| CATCGACCTTTAAGTGCCTC+TGG | 0.445875 | 4.4:+336576 | None:intergenic |
| TCCAAGCCATCTTGGGTGCA+AGG | 0.447157 | 4.4:+336840 | None:intergenic |
| GTGTTGATGGACCTTGAGCC+TGG | 0.447823 | 4.4:-338175 | MS.gene040121:CDS |
| GGAGGAACAGGTTCTGGAAT+GGG | 0.448714 | 4.4:-337836 | MS.gene040121:CDS |
| TTTCAAAGGATCCAATTGTT+GGG | 0.450141 | 4.4:-336683 | MS.gene040121:CDS |
| CCTTCTTGTAATAAAGAAAA+GGG | 0.452263 | 4.4:+337627 | None:intergenic |
| TGTTCTTGATGTCGTAAGAA+AGG | 0.456592 | 4.4:-338020 | MS.gene040121:CDS |
| AAAGTGAGCATCATTCGATC+AGG | 0.458927 | 4.4:+337779 | None:intergenic |
| ATGGCTTGCAGGTTGTGTAT+TGG | 0.465781 | 4.4:-336370 | MS.gene040121:CDS |
| CTGGCACCATGGATGCTGTC+CGG | 0.468584 | 4.4:-338156 | MS.gene040121:CDS |
| AAGGTCCATCAACACTGCCC+TGG | 0.469465 | 4.4:+338183 | None:intergenic |
| TAATTGTTTCCAAGCCATCT+TGG | 0.472415 | 4.4:+336832 | None:intergenic |
| TATTGAGAGATGAACCGAAA+TGG | 0.474221 | 4.4:-336389 | MS.gene040121:CDS |
| TCAAATAGGAATAAAGTTCT+GGG | 0.475681 | 4.4:-338326 | MS.gene040121:CDS |
| AGCCGAAATGTTGTCGCTCT+CGG | 0.477888 | 4.4:+336473 | None:intergenic |
| AGGAAAGTTGCTCTTGCATC+CGG | 0.477942 | 4.4:-337607 | MS.gene040121:intron |
| ACAGAAAGTGTTGCATTGTA+AGG | 0.479132 | 4.4:+337713 | None:intergenic |
| TATTCGCTTGTTGGTGTTGG+TGG | 0.480363 | 4.4:+336288 | None:intergenic |
| CCATCTTGGGTGCAAGGTTG+TGG | 0.481149 | 4.4:+336846 | None:intergenic |
| GTATTTGGACAGTCTGGTGC+CGG | 0.481233 | 4.4:-338094 | MS.gene040121:CDS |
| ACAACGTCCAATCGGTCAAA+AGG | 0.486049 | 4.4:-336256 | MS.gene040121:CDS |
| CATCGGCATTCTCCACCAAT+TGG | 0.487134 | 4.4:+337687 | None:intergenic |
| TCGGTCAAAAGGCGGCAAAA+AGG | 0.487566 | 4.4:-336245 | MS.gene040121:CDS |
| ACCTTGCACCCAAGATGGCT+TGG | 0.489398 | 4.4:-336841 | MS.gene040121:CDS |
| ATGAACTTCTCATTCAATCA+TGG | 0.496152 | 4.4:-336713 | MS.gene040121:CDS |
| TCTGCCCATAAGGGCCAGTC+CGG | 0.496292 | 4.4:+338137 | None:intergenic |
| ACCATGGATGCTGTCCGGAC+TGG | 0.506468 | 4.4:-338151 | MS.gene040121:CDS |
| CATTTGCACTTCATGAGACA+TGG | 0.508686 | 4.4:+336911 | None:intergenic |
| CGGACAGCATCCATGGTGCC+AGG | 0.508780 | 4.4:+338157 | None:intergenic |
| TTGTATTCGCTTGTTGGTGT+TGG | 0.511913 | 4.4:+336285 | None:intergenic |
| TGTCCAAATACAAAGTTGTC+TGG | 0.512120 | 4.4:+338106 | None:intergenic |
| GCCGGAAAATCTGCCCATAA+GGG | 0.514404 | 4.4:+338128 | None:intergenic |
| GCCAAGGGTCATTACACTGA+GGG | 0.515798 | 4.4:-338061 | MS.gene040121:CDS |
| GAGAATTGTGATTGCTTGCA+AGG | 0.516718 | 4.4:-337992 | MS.gene040121:intron |
| GCCAGTCCGGACAGCATCCA+TGG | 0.516786 | 4.4:+338150 | None:intergenic |
| AATGGAGATAGAGAGAAAGA+AGG | 0.517552 | 4.4:-336096 | MS.gene040121:CDS |
| CTAACGGTCGTTATGTTCCC+AGG | 0.520423 | 4.4:-338201 | MS.gene040121:CDS |
| AGGTCCATCAACACTGCCCT+GGG | 0.522893 | 4.4:+338184 | None:intergenic |
| ACCCTCAGTGTAATGACCCT+TGG | 0.523804 | 4.4:+338060 | None:intergenic |
| ACTTTCTGTTCACCAATTGG+TGG | 0.523935 | 4.4:-337699 | MS.gene040121:CDS |
| GGAGAATGCCGATGAGTGTA+TGG | 0.526042 | 4.4:-337678 | MS.gene040121:CDS |
| CAAATACAAAGTTGTCTGGC+CGG | 0.532039 | 4.4:+338110 | None:intergenic |
| TGAATGGTTCACGTACATCT+TGG | 0.533697 | 4.4:+336433 | None:intergenic |
| CTTGAAAATTCTCGTCGCGA+TGG | 0.533833 | 4.4:+336607 | None:intergenic |
| AATCCACCACAACGTCCAAT+CGG | 0.536837 | 4.4:-336264 | MS.gene040121:CDS |
| AGGAGGAACAGGTTCTGGAA+TGG | 0.537634 | 4.4:-337837 | MS.gene040121:CDS |
| GTCAAGGTTTATTACAATGA+GGG | 0.538427 | 4.4:-338226 | MS.gene040121:CDS |
| GTGTCTGACACCTTTGGAGA+TGG | 0.540354 | 4.4:+337746 | None:intergenic |
| CATTCACACTTGAGAATGCA+TGG | 0.543088 | 4.4:-336416 | MS.gene040121:CDS |
| GTGTGCCACTCCTTGGGAGG+AGG | 0.545564 | 4.4:-337854 | MS.gene040121:CDS |
| ATCATGGCTCAATATTTCAA+AGG | 0.547059 | 4.4:-336697 | MS.gene040121:CDS |
| CCACAACCTTGCACCCAAGA+TGG | 0.549550 | 4.4:-336846 | MS.gene040121:CDS |
| CATCCATGGTGCCAGGCTCA+AGG | 0.552841 | 4.4:+338164 | None:intergenic |
| AGTCAAGGTTTATTACAATG+AGG | 0.563542 | 4.4:-338227 | MS.gene040121:CDS |
| ATTCGCTTGTTGGTGTTGGT+GGG | 0.567081 | 4.4:+336289 | None:intergenic |
| GAGCACGGGATTGACCCTAT+AGG | 0.579313 | 4.4:-338289 | MS.gene040121:CDS |
| CAAGTGTGCCACTCCTTGGG+AGG | 0.591945 | 4.4:-337857 | MS.gene040121:CDS |
| TATTACAATGAGGGATCTAA+CGG | 0.593054 | 4.4:-338217 | MS.gene040121:CDS |
| GTTGTCGCTCTAAAGAAAAG+TGG | 0.594037 | 4.4:-336501 | MS.gene040121:CDS |
| ATCAAGGACCATACACTCAT+CGG | 0.595529 | 4.4:+337670 | None:intergenic |
| AATAAGATTTAAACCAAAGG+AGG | 0.598325 | 4.4:-336736 | MS.gene040121:CDS |
| AGAACCTGTTCCTCCTCCCA+AGG | 0.602121 | 4.4:+337844 | None:intergenic |
| TGACCGATTGGACGTTGTGG+TGG | 0.605293 | 4.4:+336261 | None:intergenic |
| CTGTTCCTCCTCCCAAGGAG+TGG | 0.606656 | 4.4:+337849 | None:intergenic |
| TCAACAACTCGAAAGAGTCA+AGG | 0.608404 | 4.4:-338242 | MS.gene040121:CDS |
| TGCACTTCATGAGACATGGT+GGG | 0.610227 | 4.4:+336915 | None:intergenic |
| TCTTGATGTCGTAAGAAAGG+AGG | 0.617343 | 4.4:-338017 | MS.gene040121:CDS |
| CAGAGGCACTTAAAGGTCGA+TGG | 0.621203 | 4.4:-336575 | MS.gene040121:CDS |
| CACATTCAAGGAGGACAGTG+TGG | 0.628454 | 4.4:-338352 | MS.gene040121:CDS |
| GAAAATAAGATTTAAACCAA+AGG | 0.637971 | 4.4:-336739 | MS.gene040121:CDS |
| AAGCTGTATGTGATGAGCAC+GGG | 0.642034 | 4.4:-338303 | MS.gene040121:CDS |
| AAGTGAGCATCATTCGATCA+GGG | 0.643313 | 4.4:+337780 | None:intergenic |
| GAAGGGAAAAGAAAAGCTTG+TGG | 0.644203 | 4.4:-336223 | MS.gene040121:CDS |
| CGAAATGTTGTCGCTCTCGG+AGG | 0.658068 | 4.4:+336476 | None:intergenic |
| ACGTCCAATCGGTCAAAAGG+CGG | 0.661921 | 4.4:-336253 | MS.gene040121:CDS |
| TAACGGTCGTTATGTTCCCA+GGG | 0.662684 | 4.4:-338200 | MS.gene040121:CDS |
| TTGCACTTCATGAGACATGG+TGG | 0.663407 | 4.4:+336914 | None:intergenic |
| GGACCTTGAGCCTGGCACCA+TGG | 0.666276 | 4.4:-338167 | MS.gene040121:CDS |
| GAAGCTGTATGTGATGAGCA+CGG | 0.669512 | 4.4:-338304 | MS.gene040121:CDS |
| TGTATGGTCCTTGATAATGA+AGG | 0.669823 | 4.4:-337662 | MS.gene040121:CDS |
| ATTGTTGGGAATGATCAAAG+AGG | 0.674803 | 4.4:-336669 | MS.gene040121:CDS |
| TGCCAAGGGTCATTACACTG+AGG | 0.702300 | 4.4:-338062 | MS.gene040121:CDS |
| GAGATTCTTCACATTCAAGG+AGG | 0.711143 | 4.4:-338361 | MS.gene040121:CDS |
| TGAAGAAGTCAGAGCTACGT+CGG | 0.718655 | 4.4:-336802 | MS.gene040121:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAAAAAAACAATTATAA+TGG | + | chr4.4:337086-337105 | None:intergenic | 10.0% |
| !! | CAAAATTTATTTAAAGATGT+TGG | - | chr4.4:336552-336571 | MS.gene040121:CDS | 15.0% |
| !! | TTATTGTGATTGATAAATAT+AGG | - | chr4.4:336575-336594 | MS.gene040121:CDS | 15.0% |
| !! | GAAAATAAGATTTAAACCAA+AGG | - | chr4.4:337720-337739 | MS.gene040121:CDS | 20.0% |
| !!! | AAAGCATGATTTTGAAAATT+TGG | + | chr4.4:337436-337455 | None:intergenic | 20.0% |
| !!! | AAGCATGATTTTGAAAATTT+GGG | + | chr4.4:337435-337454 | None:intergenic | 20.0% |
| !!! | TGTATTGGTAACAATTATAA+TGG | + | chr4.4:337227-337246 | None:intergenic | 20.0% |
| ! | AATAAGATTTAAACCAAAGG+AGG | - | chr4.4:337723-337742 | MS.gene040121:CDS | 25.0% |
| ! | ATATTCAAAGATATGTGCAA+CGG | + | chr4.4:337146-337165 | None:intergenic | 25.0% |
| ! | ATCAAATAGGAATAAAGTTC+TGG | - | chr4.4:336132-336151 | MS.gene040121:CDS | 25.0% |
| ! | ATCTTCACAAATATATGCAA+CGG | + | chr4.4:337196-337215 | None:intergenic | 25.0% |
| ! | CAATCTCTTGATCATTTAAT+TGG | + | chr4.4:337588-337607 | None:intergenic | 25.0% |
| ! | CCTTCTTGTAATAAAGAAAA+GGG | + | chr4.4:336835-336854 | None:intergenic | 25.0% |
| ! | GAAAAAAAGATTTCAACCAA+AGG | - | chr4.4:337693-337712 | MS.gene040121:CDS | 25.0% |
| ! | TCAAATAGGAATAAAGTTCT+GGG | - | chr4.4:336133-336152 | MS.gene040121:CDS | 25.0% |
| ! | TCCTTCTTGTAATAAAGAAA+AGG | + | chr4.4:336836-336855 | None:intergenic | 25.0% |
| !! | ATCTTTCAAAGCATCAAATT+TGG | + | chr4.4:338274-338293 | None:intergenic | 25.0% |
| !! | CATCTATTTCAAAGTTTGTT+GGG | - | chr4.4:337923-337942 | MS.gene040121:intron | 25.0% |
| !! | GTAAAGAAGAAAAAGTGTAT+TGG | + | chr4.4:337242-337261 | None:intergenic | 25.0% |
| !! | TCTTTCAAAGCATCAAATTT+GGG | + | chr4.4:338273-338292 | None:intergenic | 25.0% |
| !! | TGAATTCTTTGTTCTTTTTG+CGG | + | chr4.4:338121-338140 | None:intergenic | 25.0% |
| !!! | AAAAATGTTGATAGTGGTAT+GGG | + | chr4.4:337507-337526 | None:intergenic | 25.0% |
| !!! | CATTTTGAGAGTGAAAAAAA+TGG | - | chr4.4:338345-338364 | MS.gene040121:CDS | 25.0% |
| !!! | GTAGTTGGTAACAATTATAA+TGG | + | chr4.4:337114-337133 | None:intergenic | 25.0% |
| AAAAAGATTTCAACCAAAGG+AGG | - | chr4.4:337696-337715 | MS.gene040121:CDS | 30.0% | |
| AACCAAGAATTATTGTGGTT+GGG | + | chr4.4:337313-337332 | None:intergenic | 30.0% | |
| AATTTCCAATGTGTGGATTT+GGG | + | chr4.4:337462-337481 | None:intergenic | 30.0% | |
| ACCCTATAGGACAATATATA+GGG | - | chr4.4:336183-336202 | MS.gene040121:CDS | 30.0% | |
| AGTCAAGGTTTATTACAATG+AGG | - | chr4.4:336232-336251 | MS.gene040121:CDS | 30.0% | |
| AGTTGAACCAAGAATTATTG+TGG | + | chr4.4:337318-337337 | None:intergenic | 30.0% | |
| ATCATGGCTCAATATTTCAA+AGG | - | chr4.4:337762-337781 | MS.gene040121:CDS | 30.0% | |
| ATGAACTTCTCATTCAATCA+TGG | - | chr4.4:337746-337765 | MS.gene040121:CDS | 30.0% | |
| ATTTCAAAGGATCCAATTGT+TGG | - | chr4.4:337775-337794 | MS.gene040121:CDS | 30.0% | |
| CAACGGTAATATTAAGTAGT+TGG | + | chr4.4:337129-337148 | None:intergenic | 30.0% | |
| CCATCTATTTCAAAGTTTGT+TGG | - | chr4.4:337922-337941 | MS.gene040121:intron | 30.0% | |
| GTCAAGGTTTATTACAATGA+GGG | - | chr4.4:336233-336252 | MS.gene040121:CDS | 30.0% | |
| TAATTTCCAATGTGTGGATT+TGG | + | chr4.4:337463-337482 | None:intergenic | 30.0% | |
| TATGGATAATTTCCAATGTG+TGG | + | chr4.4:337469-337488 | None:intergenic | 30.0% | |
| TATTACAATGAGGGATCTAA+CGG | - | chr4.4:336242-336261 | MS.gene040121:CDS | 30.0% | |
| TCCCTATATATTGTCCTATA+GGG | + | chr4.4:336187-336206 | None:intergenic | 30.0% | |
| TTCCCTATATATTGTCCTAT+AGG | + | chr4.4:336188-336207 | None:intergenic | 30.0% | |
| TTTCAAAGGATCCAATTGTT+GGG | - | chr4.4:337776-337795 | MS.gene040121:CDS | 30.0% | |
| ! | ATCAAAGAGGAGATAGTTTT+TGG | - | chr4.4:337803-337822 | MS.gene040121:CDS | 30.0% |
| ! | ATTGGATGCATTTTCAAAGT+AGG | + | chr4.4:337392-337411 | None:intergenic | 30.0% |
| ! | CCCTTTTCTTTATTACAAGA+AGG | - | chr4.4:336832-336851 | MS.gene040121:CDS | 30.0% |
| ! | GAGATGAAAAATGTTGATAG+TGG | + | chr4.4:337513-337532 | None:intergenic | 30.0% |
| !! | CCAACAAACTTTGAAATAGA+TGG | + | chr4.4:337925-337944 | None:intergenic | 30.0% |
| !! | GAAAAATGTTGATAGTGGTA+TGG | + | chr4.4:337508-337527 | None:intergenic | 30.0% |
| !!! | AGGAGACATTTTGTTGATTT+TGG | + | chr4.4:337372-337391 | None:intergenic | 30.0% |
| !!! | TTTGTTGATTTTGGATGCAT+GGG | + | chr4.4:337363-337382 | None:intergenic | 30.0% |
| !!! | TTTTGTTGATTTTGGATGCA+TGG | + | chr4.4:337364-337383 | None:intergenic | 30.0% |
| AACACTTTCTGTTCACCAAT+TGG | - | chr4.4:336757-336776 | MS.gene040121:CDS | 35.0% | |
| AACTTTGTATTTGGACAGTC+TGG | - | chr4.4:336359-336378 | MS.gene040121:CDS | 35.0% | |
| AATGGAGATAGAGAGAAAGA+AGG | - | chr4.4:338363-338382 | MS.gene040121:CDS | 35.0% | |
| AATTGTTTCCAAGCCATCTT+GGG | + | chr4.4:337629-337648 | None:intergenic | 35.0% | |
| ACCAAGAATTATTGTGGTTG+GGG | + | chr4.4:337312-337331 | None:intergenic | 35.0% | |
| ACGGTAAGAAAAAGTTGCAA+CGG | + | chr4.4:337177-337196 | None:intergenic | 35.0% | |
| AGAACAAAGAATTCAGCTTC+TGG | - | chr4.4:338126-338145 | MS.gene040121:CDS | 35.0% | |
| ATTGTTGGGAATGATCAAAG+AGG | - | chr4.4:337790-337809 | MS.gene040121:CDS | 35.0% | |
| CTTTGATCATTCCCAACAAT+TGG | + | chr4.4:337790-337809 | None:intergenic | 35.0% | |
| GAACCAAGAATTATTGTGGT+TGG | + | chr4.4:337314-337333 | None:intergenic | 35.0% | |
| GACCCTATAGGACAATATAT+AGG | - | chr4.4:336182-336201 | MS.gene040121:CDS | 35.0% | |
| GCAACTTTCCTTCATTATCA+AGG | + | chr4.4:336808-336827 | None:intergenic | 35.0% | |
| GCAAGGTAATCAAACATCAT+GGG | - | chr4.4:336484-336503 | MS.gene040121:CDS | 35.0% | |
| GGCTTGGAAACAATTAATCT+TGG | - | chr4.4:337634-337653 | MS.gene040121:CDS | 35.0% | |
| TAATTGTTTCCAAGCCATCT+TGG | + | chr4.4:337630-337649 | None:intergenic | 35.0% | |
| TATTGAGAGATGAACCGAAA+TGG | - | chr4.4:338070-338089 | MS.gene040121:CDS | 35.0% | |
| TGCAAGGTAATCAAACATCA+TGG | - | chr4.4:336483-336502 | MS.gene040121:CDS | 35.0% | |
| TGGTTCAACTACTTGCAAAA+TGG | - | chr4.4:337328-337347 | MS.gene040121:intron | 35.0% | |
| TGTCCAAATACAAAGTTGTC+TGG | + | chr4.4:336356-336375 | None:intergenic | 35.0% | |
| TGTTCTTGATGTCGTAAGAA+AGG | - | chr4.4:336439-336458 | MS.gene040121:CDS | 35.0% | |
| TTCAACTACTTGCAAAATGG+TGG | - | chr4.4:337331-337350 | MS.gene040121:intron | 35.0% | |
| TTGGGTTATGATGTGAGTTT+GGG | + | chr4.4:337417-337436 | None:intergenic | 35.0% | |
| TTTATCCCAAATCCACACAT+TGG | - | chr4.4:337454-337473 | MS.gene040121:intron | 35.0% | |
| ! | ATGATGTGAGTTTGGGTTAT+TGG | + | chr4.4:337410-337429 | None:intergenic | 35.0% |
| ! | TTCTTTGTTCTTTTTGCGGA+CGG | + | chr4.4:338117-338136 | None:intergenic | 35.0% |
| ! | TTTGGGTTATGATGTGAGTT+TGG | + | chr4.4:337418-337437 | None:intergenic | 35.0% |
| !! | ACAGAAAGTGTTGCATTGTA+AGG | + | chr4.4:336749-336768 | None:intergenic | 35.0% |
| !! | GATAGTTTTTGGAAGAGGAT+TGG | - | chr4.4:337814-337833 | MS.gene040121:CDS | 35.0% |
| !! | TCTTTCGAGTTGTTGAAGTT+TGG | + | chr4.4:336213-336232 | None:intergenic | 35.0% |
| !! | TGTATGGTCCTTGATAATGA+AGG | - | chr4.4:336797-336816 | MS.gene040121:CDS | 35.0% |
| !! | TTTTCAAGAGAGAAAACCAG+AGG | - | chr4.4:337867-337886 | MS.gene040121:intron | 35.0% |
| !!! | AATCTTATTTTCGCCTCCTT+TGG | + | chr4.4:337712-337731 | None:intergenic | 35.0% |
| !!! | TTGTTGATTTTGGATGCATG+GGG | + | chr4.4:337362-337381 | None:intergenic | 35.0% |
| AAAGTGAGCATCATTCGATC+AGG | + | chr4.4:336683-336702 | None:intergenic | 40.0% | |
| AAGTGAGCATCATTCGATCA+GGG | + | chr4.4:336682-336701 | None:intergenic | 40.0% | |
| ACCCCAACCACAATAATTCT+TGG | - | chr4.4:337308-337327 | MS.gene040121:intron | 40.0% | |
| ACCCTTGGCAAAATTGTTTC+CGG | + | chr4.4:336387-336406 | None:intergenic | 40.0% | |
| ACTTTCTGTTCACCAATTGG+TGG | - | chr4.4:336760-336779 | MS.gene040121:CDS | 40.0% | |
| ATCAAGGACCATACACTCAT+CGG | + | chr4.4:336792-336811 | None:intergenic | 40.0% | |
| ATGAGAAGTTCATCCTCCTT+TGG | + | chr4.4:337739-337758 | None:intergenic | 40.0% | |
| ATGGATAATTGCACGACAGT+TGG | - | chr4.4:336944-336963 | MS.gene040121:intron | 40.0% | |
| CAAATACAAAGTTGTCTGGC+CGG | + | chr4.4:336352-336371 | None:intergenic | 40.0% | |
| CATGCATTCTCAAGTGTGAA+TGG | + | chr4.4:338045-338064 | None:intergenic | 40.0% | |
| CATTCACACTTGAGAATGCA+TGG | - | chr4.4:338043-338062 | MS.gene040121:CDS | 40.0% | |
| CATTTGCACTTCATGAGACA+TGG | + | chr4.4:337551-337570 | None:intergenic | 40.0% | |
| CGTGAGATTCTTCACATTCA+AGG | - | chr4.4:336095-336114 | MS.gene040121:CDS | 40.0% | |
| GAAGGGAAAAGAAAAGCTTG+TGG | - | chr4.4:338236-338255 | MS.gene040121:CDS | 40.0% | |
| GAGAATTGTGATTGCTTGCA+AGG | - | chr4.4:336467-336486 | MS.gene040121:CDS | 40.0% | |
| GAGATTCTTCACATTCAAGG+AGG | - | chr4.4:336098-336117 | MS.gene040121:CDS | 40.0% | |
| GGACAGTGTGGAAATCAAAT+AGG | - | chr4.4:336119-336138 | MS.gene040121:CDS | 40.0% | |
| TAAGACACAGTGGTAGAGTT+TGG | + | chr4.4:336992-337011 | None:intergenic | 40.0% | |
| TCAACAACTCGAAAGAGTCA+AGG | - | chr4.4:336217-336236 | MS.gene040121:CDS | 40.0% | |
| TCTTGATGTCGTAAGAAAGG+AGG | - | chr4.4:336442-336461 | MS.gene040121:CDS | 40.0% | |
| TGAATGGTTCACGTACATCT+TGG | + | chr4.4:338029-338048 | None:intergenic | 40.0% | |
| TTATTGTGGTTGGGGTTCAT+TGG | + | chr4.4:337304-337323 | None:intergenic | 40.0% | |
| ! | TTGTATTCGCTTGTTGGTGT+TGG | + | chr4.4:338177-338196 | None:intergenic | 40.0% |
| !! | AGAAAACCAGAGGCACTTAA+AGG | - | chr4.4:337877-337896 | MS.gene040121:intron | 40.0% |
| !! | AGAATTGCTCTAAGACACAG+TGG | + | chr4.4:337002-337021 | None:intergenic | 40.0% |
| !! | GAGGAGATAGTTTTTGGAAG+AGG | - | chr4.4:337809-337828 | MS.gene040121:CDS | 40.0% |
| !! | GTTGTCGCTCTAAAGAAAAG+TGG | - | chr4.4:337958-337977 | MS.gene040121:intron | 40.0% |
| !! | TGTTGATAGTGGTATGGGTA+AGG | + | chr4.4:337502-337521 | None:intergenic | 40.0% |
| !! | TTCAGCTTCTGGAGCATATT+CGG | - | chr4.4:338137-338156 | MS.gene040121:CDS | 40.0% |
| !!! | TGTTGATTTTGGATGCATGG+GGG | + | chr4.4:337361-337380 | None:intergenic | 40.0% |
| AAGCTGTATGTGATGAGCAC+GGG | - | chr4.4:336156-336175 | MS.gene040121:CDS | 45.0% | |
| AATCCACCACAACGTCCAAT+CGG | - | chr4.4:338195-338214 | MS.gene040121:CDS | 45.0% | |
| ACAACGTCCAATCGGTCAAA+AGG | - | chr4.4:338203-338222 | MS.gene040121:CDS | 45.0% | |
| ACAACTGTGTCTGACACCTT+TGG | + | chr4.4:336722-336741 | None:intergenic | 45.0% | |
| ACACAACCTGCAAGCCATTT+CGG | + | chr4.4:338087-338106 | None:intergenic | 45.0% | |
| AGGAAAGTTGCTCTTGCATC+CGG | - | chr4.4:336852-336871 | MS.gene040121:CDS | 45.0% | |
| CAAAAGGCGGCAAAAAGGAA+GGG | - | chr4.4:338219-338238 | MS.gene040121:CDS | 45.0% | |
| CCAAAAGACACCACCGATAA+TGG | + | chr4.4:336886-336905 | None:intergenic | 45.0% | |
| CGGCCAGACAACTTTGTATT+TGG | - | chr4.4:336350-336369 | MS.gene040121:CDS | 45.0% | |
| CTCTGTCTTTCCATCTCCAA+AGG | - | chr4.4:336703-336722 | MS.gene040121:CDS | 45.0% | |
| CTTGAAAATTCTCGTCGCGA+TGG | + | chr4.4:337855-337874 | None:intergenic | 45.0% | |
| GAAGCTGTATGTGATGAGCA+CGG | - | chr4.4:336155-336174 | MS.gene040121:CDS | 45.0% | |
| GGGTAAGGTGGTGTATGATA+TGG | + | chr4.4:337487-337506 | None:intergenic | 45.0% | |
| TAACGGTCGTTATGTTCCCA+GGG | - | chr4.4:336259-336278 | MS.gene040121:CDS | 45.0% | |
| TCAAAAGGCGGCAAAAAGGA+AGG | - | chr4.4:338218-338237 | MS.gene040121:CDS | 45.0% | |
| TGAAGAAGTCAGAGCTACGT+CGG | - | chr4.4:337657-337676 | MS.gene040121:CDS | 45.0% | |
| TGCACTTCATGAGACATGGT+GGG | + | chr4.4:337547-337566 | None:intergenic | 45.0% | |
| TTGCACTTCATGAGACATGG+TGG | + | chr4.4:337548-337567 | None:intergenic | 45.0% | |
| ! | ACAGTGGTAGAGTTTGGAAC+CGG | + | chr4.4:336986-337005 | None:intergenic | 45.0% |
| ! | ACCGATAATGGTGCTCTTAC+CGG | + | chr4.4:336874-336893 | None:intergenic | 45.0% |
| ! | ATGGCTTGCAGGTTGTGTAT+TGG | - | chr4.4:338089-338108 | MS.gene040121:CDS | 45.0% |
| ! | ATTTCAAGTGTGCCACTCCT+TGG | - | chr4.4:336598-336617 | MS.gene040121:CDS | 45.0% |
| ! | CCATTATCGGTGGTGTCTTT+TGG | - | chr4.4:336883-336902 | MS.gene040121:CDS | 45.0% |
| ! | GCCGGAAACAATTTTGCCAA+GGG | - | chr4.4:336383-336402 | MS.gene040121:CDS | 45.0% |
| ! | TGCCGGAAACAATTTTGCCA+AGG | - | chr4.4:336382-336401 | MS.gene040121:CDS | 45.0% |
| ! | TGGTGTCTTTTCTTGGCTAC+CGG | - | chr4.4:336964-336983 | MS.gene040121:intron | 45.0% |
| ! | TTTCAAGTGTGCCACTCCTT+GGG | - | chr4.4:336599-336618 | MS.gene040121:CDS | 45.0% |
| ! | TTTTGACCGATTGGACGTTG+TGG | + | chr4.4:338204-338223 | None:intergenic | 45.0% |
| !! | ATTCGCTTGTTGGTGTTGGT+GGG | + | chr4.4:338173-338192 | None:intergenic | 45.0% |
| !! | CGACAGTTGGTGTCTTTTCT+TGG | - | chr4.4:336957-336976 | MS.gene040121:intron | 45.0% |
| !! | GGTGGATTGTATTCGCTTGT+TGG | + | chr4.4:338183-338202 | None:intergenic | 45.0% |
| !! | TATTCGCTTGTTGGTGTTGG+TGG | + | chr4.4:338174-338193 | None:intergenic | 45.0% |
| !! | TCCGGTAAGAGCACCATTAT+CGG | - | chr4.4:336870-336889 | MS.gene040121:CDS | 45.0% |
| !! | TGATAGTGGTATGGGTAAGG+TGG | + | chr4.4:337499-337518 | None:intergenic | 45.0% |
| ACCCTCAGTGTAATGACCCT+TGG | + | chr4.4:336402-336421 | None:intergenic | 50.0% | |
| ACGTCCAATCGGTCAAAAGG+CGG | - | chr4.4:338206-338225 | MS.gene040121:CDS | 50.0% | |
| AGCCGAAATGTTGTCGCTCT+CGG | + | chr4.4:337989-338008 | None:intergenic | 50.0% | |
| CACATTCAAGGAGGACAGTG+TGG | - | chr4.4:336107-336126 | MS.gene040121:CDS | 50.0% | |
| CATCGACCTTTAAGTGCCTC+TGG | + | chr4.4:337886-337905 | None:intergenic | 50.0% | |
| CATCGGCATTCTCCACCAAT+TGG | + | chr4.4:336775-336794 | None:intergenic | 50.0% | |
| CTAACGGTCGTTATGTTCCC+AGG | - | chr4.4:336258-336277 | MS.gene040121:CDS | 50.0% | |
| CTCCGAGAGCGACAACATTT+CGG | - | chr4.4:337984-338003 | MS.gene040121:intron | 50.0% | |
| GCCAAGGGTCATTACACTGA+GGG | - | chr4.4:336398-336417 | MS.gene040121:CDS | 50.0% | |
| GCCGGAAAATCTGCCCATAA+GGG | + | chr4.4:336334-336353 | None:intergenic | 50.0% | |
| GGAGAATGCCGATGAGTGTA+TGG | - | chr4.4:336781-336800 | MS.gene040121:CDS | 50.0% | |
| GTATTTGGACAGTCTGGTGC+CGG | - | chr4.4:336365-336384 | MS.gene040121:CDS | 50.0% | |
| TCGGTCAAAAGGCGGCAAAA+AGG | - | chr4.4:338214-338233 | MS.gene040121:CDS | 50.0% | |
| TGCCAAGGGTCATTACACTG+AGG | - | chr4.4:336397-336416 | MS.gene040121:CDS | 50.0% | |
| ! | GATGAACCGAAATGGCTTGC+AGG | - | chr4.4:338078-338097 | MS.gene040121:CDS | 50.0% |
| ! | GCCCTTATGGGCAGATTTTC+CGG | - | chr4.4:336330-336349 | MS.gene040121:CDS | 50.0% |
| ! | GTGTCTGACACCTTTGGAGA+TGG | + | chr4.4:336716-336735 | None:intergenic | 50.0% |
| ! | GTGTTGCTACTGTGTCAGGA+AGG | - | chr4.4:336920-336939 | MS.gene040121:intron | 50.0% |
| ! | TTTGCCGCCTTTTGACCGAT+TGG | + | chr4.4:338213-338232 | None:intergenic | 50.0% |
| !! | AGGAGGAACAGGTTCTGGAA+TGG | - | chr4.4:336622-336641 | MS.gene040121:CDS | 50.0% |
| !! | CAGAGGCACTTAAAGGTCGA+TGG | - | chr4.4:337884-337903 | MS.gene040121:intron | 50.0% |
| !! | GGAGGAACAGGTTCTGGAAT+GGG | - | chr4.4:336623-336642 | MS.gene040121:CDS | 50.0% |
| !! | GGTAAGAGCACCATTATCGG+TGG | - | chr4.4:336873-336892 | MS.gene040121:CDS | 50.0% |
| AAGGTCCATCAACACTGCCC+TGG | + | chr4.4:336279-336298 | None:intergenic | 55.0% | |
| ACCTTGCACCCAAGATGGCT+TGG | - | chr4.4:337618-337637 | MS.gene040121:CDS | 55.0% | |
| AGAACCTGTTCCTCCTCCCA+AGG | + | chr4.4:336618-336637 | None:intergenic | 55.0% | |
| AGGTCCATCAACACTGCCCT+GGG | + | chr4.4:336278-336297 | None:intergenic | 55.0% | |
| CCACAACCTTGCACCCAAGA+TGG | - | chr4.4:337613-337632 | MS.gene040121:CDS | 55.0% | |
| CCATCTTGGGTGCAAGGTTG+TGG | + | chr4.4:337616-337635 | None:intergenic | 55.0% | |
| CCTGACACAGTAGCAACACG+TGG | + | chr4.4:336919-336938 | None:intergenic | 55.0% | |
| CGAAATGTTGTCGCTCTCGG+AGG | + | chr4.4:337986-338005 | None:intergenic | 55.0% | |
| GAGCACGGGATTGACCCTAT+AGG | - | chr4.4:336170-336189 | MS.gene040121:CDS | 55.0% | |
| GCTACTGTGTCAGGAAGGCA+TGG | - | chr4.4:336925-336944 | MS.gene040121:intron | 55.0% | |
| GGCCGGAAAATCTGCCCATA+AGG | + | chr4.4:336335-336354 | None:intergenic | 55.0% | |
| TCCAAGCCATCTTGGGTGCA+AGG | + | chr4.4:337622-337641 | None:intergenic | 55.0% | |
| TGACCGATTGGACGTTGTGG+TGG | + | chr4.4:338201-338220 | None:intergenic | 55.0% | |
| TTGGGAGGAGGAACAGGTTC+TGG | - | chr4.4:336617-336636 | MS.gene040121:CDS | 55.0% | |
| ! | CCACGTGTTGCTACTGTGTC+AGG | - | chr4.4:336916-336935 | MS.gene040121:CDS | 55.0% |
| ! | GTGTTGATGGACCTTGAGCC+TGG | - | chr4.4:336284-336303 | MS.gene040121:CDS | 55.0% |
| ! | TGTTCCCAGGGCAGTGTTGA+TGG | - | chr4.4:336271-336290 | MS.gene040121:CDS | 55.0% |
| ACCATGGATGCTGTCCGGAC+TGG | - | chr4.4:336308-336327 | MS.gene040121:CDS | 60.0% | |
| CACTCCTTGGGAGGAGGAAC+AGG | - | chr4.4:336611-336630 | MS.gene040121:CDS | 60.0% | |
| CTGGCACCATGGATGCTGTC+CGG | - | chr4.4:336303-336322 | MS.gene040121:CDS | 60.0% | |
| CTGTTCCTCCTCCCAAGGAG+TGG | + | chr4.4:336613-336632 | None:intergenic | 60.0% | |
| TCTGCCCATAAGGGCCAGTC+CGG | + | chr4.4:336325-336344 | None:intergenic | 60.0% | |
| ! | CAAGTGTGCCACTCCTTGGG+AGG | - | chr4.4:336602-336621 | MS.gene040121:CDS | 60.0% |
| ! | CATCCATGGTGCCAGGCTCA+AGG | + | chr4.4:336298-336317 | None:intergenic | 60.0% |
| !! | CTGTCCGGACTGGCCCTTAT+GGG | - | chr4.4:336318-336337 | MS.gene040121:CDS | 60.0% |
| CGGACAGCATCCATGGTGCC+AGG | + | chr4.4:336305-336324 | None:intergenic | 65.0% | |
| GCCAGTCCGGACAGCATCCA+TGG | + | chr4.4:336312-336331 | None:intergenic | 65.0% | |
| GGACCTTGAGCCTGGCACCA+TGG | - | chr4.4:336292-336311 | MS.gene040121:CDS | 65.0% | |
| ! | GTGTGCCACTCCTTGGGAGG+AGG | - | chr4.4:336605-336624 | MS.gene040121:CDS | 65.0% |
| !! | GCTGTCCGGACTGGCCCTTA+TGG | - | chr4.4:336317-336336 | MS.gene040121:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 336092 | 338389 | 336092 | ID=MS.gene040121 |
| chr4.4 | mRNA | 336092 | 338389 | 336092 | ID=MS.gene040121.t1;Parent=MS.gene040121 |
| chr4.4 | exon | 337993 | 338389 | 337993 | ID=MS.gene040121.t1.exon1;Parent=MS.gene040121.t1 |
| chr4.4 | CDS | 337993 | 338389 | 337993 | ID=cds.MS.gene040121.t1;Parent=MS.gene040121.t1 |
| chr4.4 | exon | 337608 | 337884 | 337608 | ID=MS.gene040121.t1.exon2;Parent=MS.gene040121.t1 |
| chr4.4 | CDS | 337608 | 337884 | 337608 | ID=cds.MS.gene040121.t1;Parent=MS.gene040121.t1 |
| chr4.4 | exon | 336092 | 336938 | 336092 | ID=MS.gene040121.t1.exon3;Parent=MS.gene040121.t1 |
| chr4.4 | CDS | 336092 | 336938 | 336092 | ID=cds.MS.gene040121.t1;Parent=MS.gene040121.t1 |
| Gene Sequence |
| Protein sequence |
