Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040386.t1 | XP_013448036.1 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 9.50E-111 | 409.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040386.t1 | Q9C7A8 | 63.9 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 1.8e-70 | 266.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040386.t1 | I3SFH0 | 98.5 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 6.8e-111 | 409.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene062116 | MS.gene040386 | PPI |
| MS.gene066552 | MS.gene040386 | PPI |
| MS.gene78156 | MS.gene040386 | PPI |
| MS.gene025347 | MS.gene040386 | PPI |
| MS.gene071261 | MS.gene040386 | PPI |
| MS.gene066551 | MS.gene040386 | PPI |
| MS.gene045765 | MS.gene040386 | PPI |
| MS.gene85342 | MS.gene040386 | PPI |
| MS.gene070139 | MS.gene040386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040386.t1 | MTR_7g029455 | 98.537 | 205 | 3 | 0 | 1 | 205 | 1 | 205 | 1.62e-150 | 416 |
| MS.gene040386.t1 | MTR_7g029455 | 95.735 | 211 | 3 | 1 | 1 | 205 | 1 | 211 | 5.43e-148 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040386.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 2.95e-93 | 271 |
| MS.gene040386.t1 | AT3G12530 | 63.902 | 205 | 73 | 1 | 1 | 205 | 1 | 204 | 2.95e-93 | 271 |
| MS.gene040386.t1 | AT3G12530 | 64.516 | 186 | 65 | 1 | 20 | 205 | 1 | 185 | 1.82e-84 | 248 |
| MS.gene040386.t1 | AT3G12530 | 67.123 | 146 | 48 | 0 | 1 | 146 | 1 | 146 | 2.20e-71 | 214 |
Find 47 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAGCTCTCCCAATAAA+TGG | 0.205932 | 7.2:+68477872 | None:intergenic |
| AATATTGTTCGCCCATTTAT+TGG | 0.207398 | 7.2:-68477884 | MS.gene040386:CDS |
| TAACAATGGCAGGGAGATTT+TGG | 0.257359 | 7.2:-68481227 | MS.gene040386:intron |
| GTAACAATCTGTGGCGTAAA+TGG | 0.311525 | 7.2:+68481203 | None:intergenic |
| CTGAAAAGAGTGAGAGTTCA+TGG | 0.319884 | 7.2:+68481499 | None:intergenic |
| GCAAATGCTCGGACATCTCT+TGG | 0.362089 | 7.2:+68480211 | None:intergenic |
| CATCGTGCCTAATCTCAAAA+TGG | 0.367525 | 7.2:-68481333 | MS.gene040386:CDS |
| ATATTGTTCGCCCATTTATT+GGG | 0.393276 | 7.2:-68477883 | MS.gene040386:CDS |
| GAAATTTCTACATAATGAAA+TGG | 0.395437 | 7.2:+68480189 | None:intergenic |
| CGTCTATCCGAAACTCGCTC+TGG | 0.395951 | 7.2:+68477809 | None:intergenic |
| CTCAGACCCAGAGCGAGTTT+CGG | 0.431964 | 7.2:-68477816 | MS.gene040386:CDS |
| ACATACTCTTGGGGCATTGT+GGG | 0.433438 | 7.2:+68477775 | None:intergenic |
| TTTGGTTGGCAATTGCTCTC+AGG | 0.469121 | 7.2:-68481169 | MS.gene040386:CDS |
| GAACTCACCATGTATGCATC+AGG | 0.471100 | 7.2:+68480033 | None:intergenic |
| TTGAGGACATCAGAGATGTA+AGG | 0.475567 | 7.2:-68479927 | MS.gene040386:CDS |
| CAACATTCCTGATGCATACA+TGG | 0.483264 | 7.2:-68480040 | MS.gene040386:intron |
| GTAAAGCTCTCCCAATAAAT+GGG | 0.485912 | 7.2:+68477873 | None:intergenic |
| TAAAGTTGAAACTGACTTGG+AGG | 0.491249 | 7.2:-68479899 | MS.gene040386:CDS |
| TACTCAAGTACCACTTTGGT+TGG | 0.492862 | 7.2:-68481183 | MS.gene040386:CDS |
| CAAATGCTCGGACATCTCTT+GGG | 0.494044 | 7.2:+68480212 | None:intergenic |
| AACATACTCTTGGGGCATTG+TGG | 0.508642 | 7.2:+68477774 | None:intergenic |
| GTCTATCCGAAACTCGCTCT+GGG | 0.525406 | 7.2:+68477810 | None:intergenic |
| CATCCACTGGGGAGGGACAA+TGG | 0.525539 | 7.2:+68481130 | None:intergenic |
| TCATAAAGTTGAAACTGACT+TGG | 0.529908 | 7.2:-68479902 | MS.gene040386:CDS |
| AGATAAGTTGACAGAAGTGT+TGG | 0.530139 | 7.2:-68480250 | MS.gene040386:CDS |
| GCTTACCAACAGTCATCCAC+TGG | 0.531346 | 7.2:+68481117 | None:intergenic |
| GGGGCATTGTGGGCAACTTG+TGG | 0.533914 | 7.2:+68477785 | None:intergenic |
| TGGTCGTACATTTGCTGTGA+AGG | 0.538880 | 7.2:-68479869 | MS.gene040386:intron |
| GTTGAAAGAGAAGAGATGGC+TGG | 0.538958 | 7.2:-68481531 | None:intergenic |
| TTGTTACTCAAGTACCACTT+TGG | 0.547955 | 7.2:-68481187 | MS.gene040386:CDS |
| TTGAAAGAGAAGAGATGGCT+GGG | 0.573014 | 7.2:-68481530 | None:intergenic |
| ATAATGAAATGGCAAATGCT+CGG | 0.577438 | 7.2:+68480200 | None:intergenic |
| CCTCCCCAGTGGATGACTGT+TGG | 0.598761 | 7.2:-68481122 | MS.gene040386:intron |
| CTTACAGAGATGAGACAAAG+AGG | 0.605102 | 7.2:+68481308 | None:intergenic |
| CAGAGCGAGTTTCGGATAGA+CGG | 0.608510 | 7.2:-68477808 | MS.gene040386:CDS |
| GCAATTGCTCTCAGGAAGAG+AGG | 0.614416 | 7.2:-68481161 | MS.gene040386:CDS |
| GAAGGTGAGATCTCTAATTG+AGG | 0.615056 | 7.2:-68479944 | MS.gene040386:intron |
| AGAGCAATTGCCAACCAAAG+TGG | 0.617222 | 7.2:+68481173 | None:intergenic |
| CTTACCAACAGTCATCCACT+GGG | 0.619536 | 7.2:+68481118 | None:intergenic |
| ACTGACTTGGAGGCATTCGA+TGG | 0.621680 | 7.2:-68479889 | MS.gene040386:CDS |
| GCTCCATTGTCCCTCCCCAG+TGG | 0.633532 | 7.2:-68481133 | MS.gene040386:CDS |
| CCAACAGTCATCCACTGGGG+AGG | 0.636318 | 7.2:+68481122 | None:intergenic |
| CAACAGTCATCCACTGGGGA+GGG | 0.643608 | 7.2:+68481123 | None:intergenic |
| ATCAAACAAACATACTCTTG+GGG | 0.651202 | 7.2:+68477766 | None:intergenic |
| TTAGCTTGAGTTCATCGCTG+AGG | 0.657498 | 7.2:-68481369 | MS.gene040386:intron |
| GGTACTTGAGTAACAATCTG+TGG | 0.658894 | 7.2:+68481194 | None:intergenic |
| TTACCAACAGTCATCCACTG+GGG | 0.839829 | 7.2:+68481119 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATGTTTTAAATAAAG+TGG | - | chr7.2:68481165-68481184 | MS.gene040386:CDS | 10.0% |
| !!! | ATTTGAAGTTTATATATATA+AGG | - | chr7.2:68479509-68479528 | MS.gene040386:intron | 10.0% |
| !!! | TTAAAACATTTTATTATGTT+GGG | + | chr7.2:68481159-68481178 | None:intergenic | 10.0% |
| !!! | TTTAAAACATTTTATTATGT+TGG | + | chr7.2:68481160-68481179 | None:intergenic | 10.0% |
| !! | TAATAATAATCTCAAACAAT+GGG | + | chr7.2:68477877-68477896 | None:intergenic | 15.0% |
| !! | TGTAAATATGTATCTAAAAA+AGG | + | chr7.2:68478041-68478060 | None:intergenic | 15.0% |
| !! | TTAATAATAATCTCAAACAA+TGG | + | chr7.2:68477878-68477897 | None:intergenic | 15.0% |
| !! | TTACAATATATTCATAACAA+TGG | - | chr7.2:68478056-68478075 | MS.gene040386:intron | 15.0% |
| !!! | GAACTTTCTTTAAAATAATT+TGG | + | chr7.2:68479651-68479670 | None:intergenic | 15.0% |
| !! | AAAAAAATGCTGAATTAGTT+AGG | - | chr7.2:68480203-68480222 | MS.gene040386:CDS | 20.0% |
| !! | AAAAAATGCTGAATTAGTTA+GGG | - | chr7.2:68480204-68480223 | MS.gene040386:CDS | 20.0% |
| !! | AAAAATAACATCAAAGTTGA+TGG | + | chr7.2:68478577-68478596 | None:intergenic | 20.0% |
| !! | AAAATGAAATGTTTACACAA+AGG | + | chr7.2:68480801-68480820 | None:intergenic | 20.0% |
| !! | ACAATTTACATCATAATTCT+TGG | - | chr7.2:68481353-68481372 | MS.gene040386:CDS | 20.0% |
| !! | ACTAGTATTATCAAGAAATT+AGG | + | chr7.2:68481095-68481114 | None:intergenic | 20.0% |
| !! | CTAGTATTATCAAGAAATTA+GGG | + | chr7.2:68481094-68481113 | None:intergenic | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | chr7.2:68479111-68479130 | None:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | chr7.2:68481385-68481404 | MS.gene040386:intron | 20.0% |
| !! | TGTTATTGTTAAAGTTAGTT+GGG | - | chr7.2:68480917-68480936 | MS.gene040386:intron | 20.0% |
| !! | TTATCAAATGCAAAAAATAG+CGG | + | chr7.2:68478760-68478779 | None:intergenic | 20.0% |
| !! | TTCTAAATCTAAATCTATAC+TGG | + | chr7.2:68479824-68479843 | None:intergenic | 20.0% |
| !! | TTTAAATAAAGTGGACATAT+GGG | - | chr7.2:68481174-68481193 | MS.gene040386:CDS | 20.0% |
| !!! | AATTTCTTGATAATACTAGT+TGG | - | chr7.2:68481095-68481114 | MS.gene040386:intron | 20.0% |
| !!! | ATGGATGATAATTTTCAAAT+TGG | - | chr7.2:68477839-68477858 | MS.gene040386:CDS | 20.0% |
| !!! | CGATTTTCTTTAATTATTAG+CGG | - | chr7.2:68478320-68478339 | MS.gene040386:intron | 20.0% |
| !!! | GAATCTTTTTGGTAATTTAA+TGG | - | chr7.2:68479460-68479479 | MS.gene040386:intron | 20.0% |
| !!! | GTATAGTTTTATTCATGTTA+GGG | - | chr7.2:68480663-68480682 | MS.gene040386:intron | 20.0% |
| !!! | TCATATTTTTCAAAACTTAC+TGG | + | chr7.2:68479149-68479168 | None:intergenic | 20.0% |
| !!! | TGTATAGTTTTATTCATGTT+AGG | - | chr7.2:68480662-68480681 | MS.gene040386:intron | 20.0% |
| !!! | TTGCATTTAAAATTTCAAAC+TGG | - | chr7.2:68479568-68479587 | MS.gene040386:intron | 20.0% |
| !!! | TTGTTATTGTTAAAGTTAGT+TGG | - | chr7.2:68480916-68480935 | MS.gene040386:intron | 20.0% |
| !!! | TTGTTGGTTTAAATAATAAC+AGG | - | chr7.2:68478982-68479001 | MS.gene040386:intron | 20.0% |
| !!! | TTTTAAATAAAGTGGACATA+TGG | - | chr7.2:68481173-68481192 | MS.gene040386:CDS | 20.0% |
| ! | AAAAGGGAAAATATCAACAT+AGG | - | chr7.2:68480578-68480597 | MS.gene040386:intron | 25.0% |
| ! | AAAGGGAAAATATCAACATA+GGG | - | chr7.2:68480579-68480598 | MS.gene040386:intron | 25.0% |
| ! | AAAGGTCTATTATAGAGAAA+AGG | - | chr7.2:68480561-68480580 | MS.gene040386:intron | 25.0% |
| ! | AAGGTCTATTATAGAGAAAA+GGG | - | chr7.2:68480562-68480581 | MS.gene040386:intron | 25.0% |
| ! | AATATATTCATAACAATGGC+AGG | - | chr7.2:68478060-68478079 | MS.gene040386:intron | 25.0% |
| ! | ACATTGTCATTGTTAGATTA+CGG | + | chr7.2:68478466-68478485 | None:intergenic | 25.0% |
| ! | AGGGTTTAATGTTGTATTTA+AGG | - | chr7.2:68480598-68480617 | MS.gene040386:intron | 25.0% |
| ! | ATATATTCATAACAATGGCA+GGG | - | chr7.2:68478061-68478080 | MS.gene040386:intron | 25.0% |
| ! | ATGCATCTCTTTCATATATT+AGG | - | chr7.2:68479856-68479875 | MS.gene040386:intron | 25.0% |
| ! | ATGTTGCCTATAAAAAAGAA+GGG | - | chr7.2:68480957-68480976 | MS.gene040386:intron | 25.0% |
| ! | ATTAAATAGGAGAAAACAAG+AGG | - | chr7.2:68479740-68479759 | MS.gene040386:intron | 25.0% |
| ! | CTAGTCACAAACAAATATTA+TGG | + | chr7.2:68479029-68479048 | None:intergenic | 25.0% |
| ! | GAAAACAAAAAGAATGATGA+AGG | - | chr7.2:68480112-68480131 | MS.gene040386:intron | 25.0% |
| ! | GAAATGAATAGATATGTAAC+AGG | + | chr7.2:68481326-68481345 | None:intergenic | 25.0% |
| ! | GTGGCATTATTATTAAATAG+CGG | - | chr7.2:68478639-68478658 | MS.gene040386:intron | 25.0% |
| ! | GTTATTGTTAGTTAGAGTTA+TGG | - | chr7.2:68480019-68480038 | MS.gene040386:intron | 25.0% |
| ! | TAAACCAACAAATTCTAAAC+TGG | + | chr7.2:68478973-68478992 | None:intergenic | 25.0% |
| ! | TATGTTGCCTATAAAAAAGA+AGG | - | chr7.2:68480956-68480975 | MS.gene040386:intron | 25.0% |
| ! | TTAAAATTTCAAACTGGAAG+AGG | - | chr7.2:68479574-68479593 | MS.gene040386:intron | 25.0% |
| ! | TTAAAGTTAGTTGGGTAATT+AGG | - | chr7.2:68480925-68480944 | MS.gene040386:intron | 25.0% |
| ! | TTTAGAGATAAATTGTCTTG+AGG | + | chr7.2:68479903-68479922 | None:intergenic | 25.0% |
| ! | TTTATGCTTGGATATTGAAT+TGG | - | chr7.2:68481220-68481239 | MS.gene040386:intron | 25.0% |
| ! | TTTCTCCTATTTAATTACAG+CGG | + | chr7.2:68479735-68479754 | None:intergenic | 25.0% |
| !! | TATTCCAGTTTAGAATTTGT+TGG | - | chr7.2:68478966-68478985 | MS.gene040386:intron | 25.0% |
| !! | TATTTCTTTTATCCCCAAAA+AGG | - | chr7.2:68478211-68478230 | MS.gene040386:intron | 25.0% |
| !! | TCATAGTTGAAAACCTTTTT+GGG | + | chr7.2:68478227-68478246 | None:intergenic | 25.0% |
| !! | TTAGTTTATTTCTCTTGTGA+AGG | - | chr7.2:68479335-68479354 | MS.gene040386:intron | 25.0% |
| !! | TTCATAGTTGAAAACCTTTT+TGG | + | chr7.2:68478228-68478247 | None:intergenic | 25.0% |
| !!! | AACAATGACAATGTTTTAGT+TGG | - | chr7.2:68478472-68478491 | MS.gene040386:intron | 25.0% |
| !!! | CTTACACTTTTTTTTATGCT+TGG | - | chr7.2:68481208-68481227 | MS.gene040386:CDS | 25.0% |
| !!! | CTTTAAAATAATTTGGTAGC+AGG | + | chr7.2:68479644-68479663 | None:intergenic | 25.0% |
| !!! | GGTAATTTTTCGAATCTTTT+TGG | - | chr7.2:68479449-68479468 | MS.gene040386:intron | 25.0% |
| !!! | TCATCATTCTTTTTGTTTTC+TGG | + | chr7.2:68480112-68480131 | None:intergenic | 25.0% |
| !!! | TTTTTCTAGAGGAATTGAAT+AGG | - | chr7.2:68480330-68480349 | MS.gene040386:intron | 25.0% |
| !!! | TTTTTTGAAGAAGACAATGA+GGG | - | chr7.2:68480265-68480284 | MS.gene040386:intron | 25.0% |
| !!! | TTTTTTTGAAGAAGACAATG+AGG | - | chr7.2:68480264-68480283 | MS.gene040386:intron | 25.0% |
| AAATCAGGAACCATATTCTT+TGG | - | chr7.2:68480139-68480158 | MS.gene040386:intron | 30.0% | |
| AAGTTCCGCTGTAATTAAAT+AGG | - | chr7.2:68479727-68479746 | MS.gene040386:intron | 30.0% | |
| AATATTGTTCGCCCATTTAT+TGG | - | chr7.2:68481413-68481432 | MS.gene040386:intron | 30.0% | |
| AATTGAAAACCTATGAAGCA+CGG | + | chr7.2:68478379-68478398 | None:intergenic | 30.0% | |
| AGTTGGGTAATTAGGAAATA+AGG | - | chr7.2:68480933-68480952 | MS.gene040386:intron | 30.0% | |
| ATAAATAACTGCATTCACAG+AGG | + | chr7.2:68480639-68480658 | None:intergenic | 30.0% | |
| ATAATGAAATGGCAAATGCT+CGG | + | chr7.2:68479100-68479119 | None:intergenic | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | chr7.2:68481414-68481433 | MS.gene040386:intron | 30.0% | |
| ATTTAATGGTTGTGAATGTC+TGG | - | chr7.2:68479474-68479493 | MS.gene040386:intron | 30.0% | |
| CGCACAATGAAAAATAATAG+TGG | + | chr7.2:68478691-68478710 | None:intergenic | 30.0% | |
| GTGCAATGAACATAAAAGTT+TGG | - | chr7.2:68479762-68479781 | MS.gene040386:intron | 30.0% | |
| GTTTCTATCAGGTTTCTATT+TGG | - | chr7.2:68481117-68481136 | MS.gene040386:intron | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | chr7.2:68479395-68479414 | MS.gene040386:intron | 30.0% | |
| TTCAGTGTAATCATATGTGT+CGG | + | chr7.2:68478295-68478314 | None:intergenic | 30.0% | |
| TTCTCATCAATGTAGTTTCA+GGG | - | chr7.2:68480820-68480839 | MS.gene040386:intron | 30.0% | |
| TTGTGTCATGATCTTTAATG+CGG | - | chr7.2:68478409-68478428 | MS.gene040386:intron | 30.0% | |
| TTTAAACTTCTCTGTCCTTT+CGG | - | chr7.2:68478903-68478922 | MS.gene040386:intron | 30.0% | |
| TTTCTCATCAATGTAGTTTC+AGG | - | chr7.2:68480819-68480838 | MS.gene040386:intron | 30.0% | |
| ! | AATACTAGTTGGTTTCTATC+AGG | - | chr7.2:68481106-68481125 | MS.gene040386:intron | 30.0% |
| ! | ATGCAGAGGATATTGATTAT+TGG | + | chr7.2:68479801-68479820 | None:intergenic | 30.0% |
| ! | CATAGTTGAAAACCTTTTTG+GGG | + | chr7.2:68478226-68478245 | None:intergenic | 30.0% |
| ! | CATATTCTTTGGAAGGAAAA+GGG | - | chr7.2:68480150-68480169 | MS.gene040386:intron | 30.0% |
| ! | TAGGAATCATTTTGTGAACA+GGG | - | chr7.2:68481063-68481082 | MS.gene040386:intron | 30.0% |
| ! | TGCAGAGGATATTGATTATT+GGG | + | chr7.2:68479800-68479819 | None:intergenic | 30.0% |
| !! | GCTATTTTCTTTTCATCTTG+AGG | - | chr7.2:68480448-68480467 | MS.gene040386:intron | 30.0% |
| !! | TTTGATTCTGATTTGGTCTT+AGG | - | chr7.2:68478793-68478812 | MS.gene040386:intron | 30.0% |
| !!! | AATGACAATGTTTTAGTTGG+TGG | - | chr7.2:68478475-68478494 | MS.gene040386:intron | 30.0% |
| !!! | CTTGTGTTTTGATTCTGATT+TGG | - | chr7.2:68478786-68478805 | MS.gene040386:intron | 30.0% |
| !!! | GAGATGTTGTTTTTTTCTAG+AGG | - | chr7.2:68480319-68480338 | MS.gene040386:intron | 30.0% |
| AAAATCCTGCAGCATATTTC+TGG | + | chr7.2:68479305-68479324 | None:intergenic | 35.0% | |
| AAAATCTGGCTGGAAAATAC+AGG | - | chr7.2:68481292-68481311 | MS.gene040386:intron | 35.0% | |
| AAATGCTGAATTAGTTAGGG+TGG | - | chr7.2:68480207-68480226 | MS.gene040386:CDS | 35.0% | |
| ACACAATAGATCACTCTCTA+AGG | + | chr7.2:68480985-68481004 | None:intergenic | 35.0% | |
| GAAACTAGGATAGCCATAAA+GGG | + | chr7.2:68480856-68480875 | None:intergenic | 35.0% | |
| GAGAAGTTTAAAAGAACCAG+TGG | + | chr7.2:68478895-68478914 | None:intergenic | 35.0% | |
| GAGAATCTGTTGAATACTCT+AGG | - | chr7.2:68481044-68481063 | MS.gene040386:intron | 35.0% | |
| GCTTATGACTATTAATCCAC+TGG | - | chr7.2:68478876-68478895 | MS.gene040386:intron | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | chr7.2:68481427-68481446 | None:intergenic | 35.0% | |
| GTTTCTATCCTAGAAAACGT+TGG | + | chr7.2:68480062-68480081 | None:intergenic | 35.0% | |
| TAAATCTATACTGGATGCAG+AGG | + | chr7.2:68479815-68479834 | None:intergenic | 35.0% | |
| TAGTACAAAGTGTGGTCAAA+TGG | - | chr7.2:68478714-68478733 | MS.gene040386:intron | 35.0% | |
| TATCAGGTTTCTATTTGGAG+AGG | - | chr7.2:68481122-68481141 | MS.gene040386:intron | 35.0% | |
| TCTCATCAATGTAGTTTCAG+GGG | - | chr7.2:68480821-68480840 | MS.gene040386:intron | 35.0% | |
| TGCCAAAGTTTGCATTTGAT+AGG | - | chr7.2:68479956-68479975 | MS.gene040386:intron | 35.0% | |
| TGGAAAATTGCGGATAGATA+TGG | - | chr7.2:68478432-68478451 | MS.gene040386:intron | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | chr7.2:68481428-68481447 | None:intergenic | 35.0% | |
| TTGTTACTCAAGTACCACTT+TGG | - | chr7.2:68478110-68478129 | MS.gene040386:intron | 35.0% | |
| TTTAATGCGGTGGAAAATTG+CGG | - | chr7.2:68478422-68478441 | MS.gene040386:intron | 35.0% | |
| ! | AATGATGAAGGTCTGAAATC+AGG | - | chr7.2:68480124-68480143 | MS.gene040386:intron | 35.0% |
| ! | AGATAAGTTGACAGAAGTGT+TGG | - | chr7.2:68479047-68479066 | MS.gene040386:intron | 35.0% |
| ! | CCATATTCTTTGGAAGGAAA+AGG | - | chr7.2:68480149-68480168 | MS.gene040386:intron | 35.0% |
| ! | CCTTTTCCTTCCAAAGAATA+TGG | + | chr7.2:68480152-68480171 | None:intergenic | 35.0% |
| ! | CTAGGAATCATTTTGTGAAC+AGG | - | chr7.2:68481062-68481081 | MS.gene040386:intron | 35.0% |
| ! | CTTTTAGATTGCACTTTGAC+TGG | - | chr7.2:68480748-68480767 | MS.gene040386:intron | 35.0% |
| ! | GACTGGAATTTTACTGTTAG+AGG | - | chr7.2:68480765-68480784 | MS.gene040386:intron | 35.0% |
| ! | GCTTCATAGGTTTTCAATTG+CGG | - | chr7.2:68478380-68478399 | MS.gene040386:intron | 35.0% |
| ! | TCTTGTGGTCTTTTTGCATT+GGG | - | chr7.2:68481016-68481035 | MS.gene040386:intron | 35.0% |
| ! | TTCTAGAGGAATTGAATAGG+TGG | - | chr7.2:68480333-68480352 | MS.gene040386:intron | 35.0% |
| ! | TTGAATGACCAACGTTTTCT+AGG | - | chr7.2:68480051-68480070 | MS.gene040386:CDS | 35.0% |
| !! | AGCAACATCAGTTTGTTAAG+AGG | - | chr7.2:68480877-68480896 | MS.gene040386:intron | 35.0% |
| !! | CCAAAACACTCTAAAATGGT+GGG | + | chr7.2:68481258-68481277 | None:intergenic | 35.0% |
| !! | GTGTCATTTGTATAGTCTTG+TGG | - | chr7.2:68481001-68481020 | MS.gene040386:intron | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | chr7.2:68479398-68479417 | MS.gene040386:intron | 35.0% |
| !!! | AAGGCTCCCTTCTTTTTTAT+AGG | + | chr7.2:68480966-68480985 | None:intergenic | 35.0% |
| !!! | AATGTTTTAGTTGGTGGACA+AGG | - | chr7.2:68478481-68478500 | MS.gene040386:intron | 35.0% |
| !!! | AGAGGATCCATTTTGAGATT+AGG | + | chr7.2:68477974-68477993 | None:intergenic | 35.0% |
| !!! | GTTTTCTAGGATAGAAACAC+CGG | - | chr7.2:68480064-68480083 | MS.gene040386:intron | 35.0% |
| AAACCTATGAAGCACGGATA+CGG | + | chr7.2:68478373-68478392 | None:intergenic | 40.0% | |
| AAACTGGAAGAGGTAGCTTT+AGG | - | chr7.2:68479584-68479603 | MS.gene040386:intron | 40.0% | |
| AAATAGCGGCTGTAGTATAG+TGG | - | chr7.2:68478653-68478672 | MS.gene040386:intron | 40.0% | |
| AACTATCACAGTTCCACTGT+TGG | - | chr7.2:68480387-68480406 | MS.gene040386:intron | 40.0% | |
| AACTGATGTTGCTCGAAACT+AGG | + | chr7.2:68480870-68480889 | None:intergenic | 40.0% | |
| AATTGAATAGGTGGAACGGT+GGG | - | chr7.2:68480342-68480361 | MS.gene040386:intron | 40.0% | |
| ACCTCTTAACTGACAGAAAC+TGG | + | chr7.2:68479982-68480001 | None:intergenic | 40.0% | |
| ACTATCACAGTTCCACTGTT+GGG | - | chr7.2:68480388-68480407 | MS.gene040386:intron | 40.0% | |
| ACTTTCCAGAAATATGCTGC+AGG | - | chr7.2:68479297-68479316 | MS.gene040386:intron | 40.0% | |
| AGACGAGACAATTCAACTAC+AGG | + | chr7.2:68479611-68479630 | None:intergenic | 40.0% | |
| AGGACAAGATGACAGGTTAA+GGG | - | chr7.2:68480468-68480487 | MS.gene040386:intron | 40.0% | |
| AGGAGAAAGAGAGATAGACA+AGG | - | chr7.2:68478513-68478532 | MS.gene040386:intron | 40.0% | |
| CAACATTCCTGATGCATACA+TGG | - | chr7.2:68479257-68479276 | MS.gene040386:intron | 40.0% | |
| CAATGAGGGTAACATAGATC+TGG | - | chr7.2:68480279-68480298 | MS.gene040386:intron | 40.0% | |
| CAGGAACCATATTCTTTGGA+AGG | - | chr7.2:68480143-68480162 | MS.gene040386:intron | 40.0% | |
| CATAGAAATACCCATCACTC+CGG | + | chr7.2:68480086-68480105 | None:intergenic | 40.0% | |
| CATCGTGCCTAATCTCAAAA+TGG | - | chr7.2:68477964-68477983 | MS.gene040386:intron | 40.0% | |
| CGAAACTAGGATAGCCATAA+AGG | + | chr7.2:68480857-68480876 | None:intergenic | 40.0% | |
| CTGAAAAGAGTGAGAGTTCA+TGG | + | chr7.2:68477801-68477820 | None:intergenic | 40.0% | |
| CTTACAGAGATGAGACAAAG+AGG | + | chr7.2:68477992-68478011 | None:intergenic | 40.0% | |
| GAAGGTGAGATCTCTAATTG+AGG | - | chr7.2:68479353-68479372 | MS.gene040386:intron | 40.0% | |
| GAGGAATTGAATAGGTGGAA+CGG | - | chr7.2:68480338-68480357 | MS.gene040386:intron | 40.0% | |
| GGAGAAAGAGAGATAGACAA+GGG | - | chr7.2:68478514-68478533 | MS.gene040386:intron | 40.0% | |
| GGCCTATCAAATGCAAACTT+TGG | + | chr7.2:68479961-68479980 | None:intergenic | 40.0% | |
| GGGGTGAATAATTCCCTTTA+TGG | - | chr7.2:68480840-68480859 | MS.gene040386:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+TGG | + | chr7.2:68478106-68478125 | None:intergenic | 40.0% | |
| GTAACAATCTGTGGCGTAAA+TGG | + | chr7.2:68478097-68478116 | None:intergenic | 40.0% | |
| GTGCGATTTAGTACAAAGTG+TGG | - | chr7.2:68478706-68478725 | MS.gene040386:intron | 40.0% | |
| GTTACTGCTTGTGTTAGACA+AGG | - | chr7.2:68480508-68480527 | MS.gene040386:intron | 40.0% | |
| GTTGTATGTTGCTGTCTAAC+AGG | + | chr7.2:68480370-68480389 | None:intergenic | 40.0% | |
| TACTCAAGTACCACTTTGGT+TGG | - | chr7.2:68478114-68478133 | MS.gene040386:intron | 40.0% | |
| TAGATATGTAACAGGACGAG+CGG | + | chr7.2:68481318-68481337 | None:intergenic | 40.0% | |
| TCCTGCAGAGAAGACTTTAA+AGG | - | chr7.2:68480543-68480562 | MS.gene040386:intron | 40.0% | |
| TGTCATGATCTTTAATGCGG+TGG | - | chr7.2:68478412-68478431 | MS.gene040386:intron | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | chr7.2:68479370-68479389 | MS.gene040386:intron | 40.0% | |
| ! | CACGCCAAAACACTCTAAAA+TGG | + | chr7.2:68481262-68481281 | None:intergenic | 40.0% |
| ! | GTAATCATATGTGTCGGTGT+CGG | + | chr7.2:68478289-68478308 | None:intergenic | 40.0% |
| ! | GTCTTGTGGTCTTTTTGCAT+TGG | - | chr7.2:68481015-68481034 | MS.gene040386:intron | 40.0% |
| ! | TAACAATGGCAGGGAGATTT+TGG | - | chr7.2:68478070-68478089 | MS.gene040386:intron | 40.0% |
| !! | ACCTTTAAAGTCTTCTCTGC+AGG | + | chr7.2:68480547-68480566 | None:intergenic | 40.0% |
| !! | ACTGTTGGGCTTTAAACAGT+GGG | - | chr7.2:68480402-68480421 | MS.gene040386:intron | 40.0% |
| !! | GCCAAAACACTCTAAAATGG+TGG | + | chr7.2:68481259-68481278 | None:intergenic | 40.0% |
| !!! | CCCACCATTTTAGAGTGTTT+TGG | - | chr7.2:68481255-68481274 | MS.gene040386:intron | 40.0% |
| AAACTTCTCTGTCCTTTCGG+TGG | - | chr7.2:68478906-68478925 | MS.gene040386:intron | 45.0% | |
| AGAGCAATTGCCAACCAAAG+TGG | + | chr7.2:68478127-68478146 | None:intergenic | 45.0% | |
| ATGCCTCTGTGACTAGGTTA+AGG | - | chr7.2:68480721-68480740 | MS.gene040386:intron | 45.0% | |
| CAAAGTGTGGTCAAATGGTG+TGG | - | chr7.2:68478719-68478738 | MS.gene040386:intron | 45.0% | |
| CAAATGCTCGGACATCTCTT+GGG | + | chr7.2:68479088-68479107 | None:intergenic | 45.0% | |
| CAAGCTTGCATTGCAGTTGA+TGG | + | chr7.2:68478620-68478639 | None:intergenic | 45.0% | |
| CATCTTGAGGACAAGATGAC+AGG | - | chr7.2:68480461-68480480 | MS.gene040386:intron | 45.0% | |
| CCTGGGAAAATGATCTCAAG+AGG | - | chr7.2:68480426-68480445 | MS.gene040386:intron | 45.0% | |
| CTTACCAACAGTCATCCACT+GGG | + | chr7.2:68478182-68478201 | None:intergenic | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | chr7.2:68479267-68479286 | None:intergenic | 45.0% | |
| GAATTGAATAGGTGGAACGG+TGG | - | chr7.2:68480341-68480360 | MS.gene040386:intron | 45.0% | |
| GACAAGATGACAGGTTAAGG+GGG | - | chr7.2:68480470-68480489 | MS.gene040386:intron | 45.0% | |
| GAGGACAAGATGACAGGTTA+AGG | - | chr7.2:68480467-68480486 | MS.gene040386:intron | 45.0% | |
| GATAGAAACACCGGAGTGAT+GGG | - | chr7.2:68480073-68480092 | MS.gene040386:intron | 45.0% | |
| GCCAGTTTCTGTCAGTTAAG+AGG | - | chr7.2:68479978-68479997 | MS.gene040386:intron | 45.0% | |
| GGACAAGATGACAGGTTAAG+GGG | - | chr7.2:68480469-68480488 | MS.gene040386:intron | 45.0% | |
| GGTGGACAAGGTGAGAATAA+AGG | - | chr7.2:68478493-68478512 | MS.gene040386:intron | 45.0% | |
| TCAACTGCAATGCAAGCTTG+TGG | - | chr7.2:68478620-68478639 | MS.gene040386:intron | 45.0% | |
| TGCTGAATTAGTTAGGGTGG+AGG | - | chr7.2:68480210-68480229 | MS.gene040386:CDS | 45.0% | |
| TTACCAACAGTCATCCACTG+GGG | + | chr7.2:68478181-68478200 | None:intergenic | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | chr7.2:68478128-68478147 | MS.gene040386:intron | 45.0% | |
| ! | ACTCTCACTCTTTTCAGCAG+AGG | - | chr7.2:68477804-68477823 | MS.gene040386:CDS | 45.0% |
| ! | CACTGTTTAAAGCCCAACAG+TGG | + | chr7.2:68480403-68480422 | None:intergenic | 45.0% |
| ! | CCTCTTGAGATCATTTTCCC+AGG | + | chr7.2:68480429-68480448 | None:intergenic | 45.0% |
| ! | GCAGAGGAGGTATGTATGTA+TGG | - | chr7.2:68477820-68477839 | MS.gene040386:CDS | 45.0% |
| ! | TTAGCTTGAGTTCATCGCTG+AGG | - | chr7.2:68477928-68477947 | MS.gene040386:intron | 45.0% |
| !! | CACTGTTGGGCTTTAAACAG+TGG | - | chr7.2:68480401-68480420 | MS.gene040386:intron | 45.0% |
| !! | TGGTCGTACATTTGCTGTGA+AGG | - | chr7.2:68479428-68479447 | MS.gene040386:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | chr7.2:68481265-68481284 | MS.gene040386:intron | 45.0% |
| CAGAGCGAGTTTCGGATAGA+CGG | - | chr7.2:68481489-68481508 | MS.gene040386:intron | 50.0% | |
| CTGCCTTAACCTAGTCACAG+AGG | + | chr7.2:68480727-68480746 | None:intergenic | 50.0% | |
| CTGTGAATGCCTCTGTGACT+AGG | - | chr7.2:68480715-68480734 | MS.gene040386:intron | 50.0% | |
| GCAAATGCTCGGACATCTCT+TGG | + | chr7.2:68479089-68479108 | None:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | chr7.2:68478136-68478155 | MS.gene040386:intron | 50.0% | |
| GCACAGACACTCCTCAGATT+AGG | - | chr7.2:68478248-68478267 | MS.gene040386:intron | 50.0% | |
| GCTTACCAACAGTCATCCAC+TGG | + | chr7.2:68478183-68478202 | None:intergenic | 50.0% | |
| GGATAGAAACACCGGAGTGA+TGG | - | chr7.2:68480072-68480091 | MS.gene040386:intron | 50.0% | |
| GTCTATCCGAAACTCGCTCT+GGG | + | chr7.2:68481490-68481509 | None:intergenic | 50.0% | |
| TGAAGCACGGATACGGACAT+CGG | + | chr7.2:68478366-68478385 | None:intergenic | 50.0% | |
| TGTCCGTATCCGTGCTTCAT+AGG | - | chr7.2:68478367-68478386 | MS.gene040386:intron | 50.0% | |
| ! | CTCACTCTTTTCAGCAGAGG+AGG | - | chr7.2:68477807-68477826 | MS.gene040386:CDS | 50.0% |
| !! | ACTGACTTGGAGGCATTCGA+TGG | - | chr7.2:68479408-68479427 | MS.gene040386:intron | 50.0% |
| !! | AGTCACAGAGGCATTCACAG+AGG | + | chr7.2:68480715-68480734 | None:intergenic | 50.0% |
| !! | GGCTTTAAACAGTGGGACCT+GGG | - | chr7.2:68480409-68480428 | MS.gene040386:intron | 50.0% |
| !!! | AGAGTGTTTTGGCGTGTGAC+GGG | - | chr7.2:68481266-68481285 | MS.gene040386:intron | 50.0% |
| CAACAGTCATCCACTGGGGA+GGG | + | chr7.2:68478177-68478196 | None:intergenic | 55.0% | |
| CGTCTATCCGAAACTCGCTC+TGG | + | chr7.2:68481491-68481510 | None:intergenic | 55.0% | |
| CTCAGACCCAGAGCGAGTTT+CGG | - | chr7.2:68481481-68481500 | MS.gene040386:intron | 55.0% | |
| TACGGACATCGGACACCACA+CGG | + | chr7.2:68478355-68478374 | None:intergenic | 55.0% | |
| TCCACATGTCGACCACCGAA+AGG | + | chr7.2:68478921-68478940 | None:intergenic | 55.0% | |
| TCCTCAGATTAGGCGAGTCG+TGG | - | chr7.2:68478258-68478277 | MS.gene040386:intron | 55.0% | |
| TCCTTTCGGTGGTCGACATG+TGG | - | chr7.2:68478917-68478936 | MS.gene040386:intron | 55.0% | |
| TGACGGGGTGAAAATCTGGC+TGG | - | chr7.2:68481282-68481301 | MS.gene040386:intron | 55.0% | |
| ! | CGTGTGACGGGGTGAAAATC+TGG | - | chr7.2:68481278-68481297 | MS.gene040386:intron | 55.0% |
| !! | GGGCTTTAAACAGTGGGACC+TGG | - | chr7.2:68480408-68480427 | MS.gene040386:intron | 55.0% |
| !!! | GAGTGTTTTGGCGTGTGACG+GGG | - | chr7.2:68481267-68481286 | MS.gene040386:intron | 55.0% |
| ATCGGACACCACACGGACAC+TGG | + | chr7.2:68478348-68478367 | None:intergenic | 60.0% | |
| CATCCACTGGGGAGGGACAA+TGG | + | chr7.2:68478170-68478189 | None:intergenic | 60.0% | |
| CCAACAGTCATCCACTGGGG+AGG | + | chr7.2:68478178-68478197 | None:intergenic | 60.0% | |
| CCTCCCCAGTGGATGACTGT+TGG | - | chr7.2:68478175-68478194 | MS.gene040386:intron | 60.0% | |
| GCCACGACTCGCCTAATCTG+AGG | + | chr7.2:68478262-68478281 | None:intergenic | 60.0% | |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | chr7.2:68481515-68481534 | None:intergenic | 60.0% |
| GCTCCATTGTCCCTCCCCAG+TGG | - | chr7.2:68478164-68478183 | MS.gene040386:intron | 65.0% | |
| ! | TAGCGGTGCCAGTGTCCGTG+TGG | - | chr7.2:68478337-68478356 | MS.gene040386:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 68477781 | 68481538 | 68477781 | ID=MS.gene040386 |
| chr7.2 | mRNA | 68477781 | 68481538 | 68477781 | ID=MS.gene040386.t1;Parent=MS.gene040386 |
| chr7.2 | exon | 68481491 | 68481538 | 68481491 | ID=MS.gene040386.t1.exon1;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68481491 | 68481538 | 68481491 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68481313 | 68481387 | 68481313 | ID=MS.gene040386.t1.exon2;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68481313 | 68481387 | 68481313 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68481123 | 68481237 | 68481123 | ID=MS.gene040386.t1.exon3;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68481123 | 68481237 | 68481123 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68480171 | 68480270 | 68480171 | ID=MS.gene040386.t1.exon4;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68480171 | 68480270 | 68480171 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68480041 | 68480071 | 68480041 | ID=MS.gene040386.t1.exon5;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68480041 | 68480071 | 68480041 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68479870 | 68479962 | 68479870 | ID=MS.gene040386.t1.exon6;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68479870 | 68479962 | 68479870 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| chr7.2 | exon | 68477781 | 68477933 | 68477781 | ID=MS.gene040386.t1.exon7;Parent=MS.gene040386.t1 |
| chr7.2 | CDS | 68477781 | 68477933 | 68477781 | ID=cds.MS.gene040386.t1;Parent=MS.gene040386.t1 |
| Gene Sequence |
| Protein sequence |
