Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04050.t1 | XP_013460157.1 | 96.2 | 319 | 10 | 2 | 1 | 318 | 5 | 322 | 6.90E-169 | 603.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04050.t1 | Q8S9H7 | 52.0 | 329 | 125 | 12 | 1 | 318 | 1 | 307 | 4.2e-74 | 279.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04050.t1 | A0A072UYJ1 | 96.2 | 319 | 10 | 2 | 1 | 318 | 5 | 322 | 5.0e-169 | 603.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04050.t1 | TF | MYB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060569 | MS.gene04050 | PPI |
| MS.gene060469 | MS.gene04050 | PPI |
| MS.gene04050 | MS.gene038745 | PPI |
| MS.gene036893 | MS.gene04050 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04050.t1 | MTR_3g462790 | 98.433 | 319 | 3 | 2 | 1 | 318 | 5 | 322 | 0.0 | 652 |
| MS.gene04050.t1 | MTR_5g069710 | 66.769 | 325 | 79 | 9 | 1 | 318 | 5 | 307 | 1.00e-145 | 412 |
| MS.gene04050.t1 | MTR_7g067080 | 54.321 | 324 | 113 | 11 | 1 | 312 | 11 | 311 | 4.10e-105 | 310 |
| MS.gene04050.t1 | MTR_5g081860 | 64.975 | 197 | 55 | 4 | 23 | 217 | 16 | 200 | 1.47e-82 | 251 |
| MS.gene04050.t1 | MTR_1g111830 | 45.528 | 246 | 110 | 7 | 37 | 281 | 22 | 244 | 3.07e-59 | 190 |
| MS.gene04050.t1 | MTR_4g111975 | 46.667 | 210 | 75 | 4 | 39 | 217 | 8 | 211 | 2.60e-52 | 174 |
| MS.gene04050.t1 | MTR_8g063600 | 46.561 | 189 | 90 | 2 | 31 | 217 | 2 | 181 | 3.15e-51 | 171 |
| MS.gene04050.t1 | MTR_8g063870 | 41.304 | 184 | 85 | 3 | 36 | 217 | 5 | 167 | 2.47e-40 | 142 |
| MS.gene04050.t1 | MTR_2g100930 | 48.322 | 149 | 59 | 5 | 139 | 270 | 104 | 251 | 6.44e-33 | 125 |
| MS.gene04050.t1 | MTR_4g100630 | 60.000 | 100 | 38 | 1 | 118 | 217 | 71 | 168 | 4.88e-32 | 122 |
| MS.gene04050.t1 | MTR_6g092540 | 73.611 | 72 | 19 | 0 | 138 | 209 | 91 | 162 | 4.01e-31 | 118 |
| MS.gene04050.t1 | MTR_4g015130 | 76.119 | 67 | 16 | 0 | 154 | 220 | 3 | 69 | 1.59e-30 | 110 |
| MS.gene04050.t1 | MTR_8g101650 | 70.270 | 74 | 21 | 1 | 136 | 209 | 97 | 169 | 3.03e-30 | 116 |
| MS.gene04050.t1 | MTR_5g037080 | 68.966 | 87 | 25 | 1 | 131 | 217 | 91 | 175 | 4.28e-30 | 116 |
| MS.gene04050.t1 | MTR_4g107230 | 61.702 | 94 | 32 | 1 | 132 | 225 | 72 | 161 | 1.41e-28 | 112 |
| MS.gene04050.t1 | MTR_5g088010 | 50.980 | 102 | 44 | 3 | 114 | 212 | 32 | 130 | 7.69e-25 | 100 |
| MS.gene04050.t1 | MTR_0036s0260 | 64.179 | 67 | 24 | 0 | 144 | 210 | 28 | 94 | 9.18e-24 | 97.1 |
| MS.gene04050.t1 | MTR_1g033620 | 79.310 | 58 | 12 | 0 | 160 | 217 | 21 | 78 | 9.89e-24 | 97.8 |
| MS.gene04050.t1 | MTR_3g104370 | 58.025 | 81 | 27 | 2 | 141 | 214 | 88 | 168 | 1.68e-23 | 97.1 |
| MS.gene04050.t1 | MTR_2g090305 | 64.179 | 67 | 24 | 0 | 144 | 210 | 28 | 94 | 4.56e-23 | 94.7 |
| MS.gene04050.t1 | MTR_1g033600 | 37.313 | 134 | 77 | 2 | 31 | 158 | 4 | 136 | 7.06e-23 | 92.8 |
| MS.gene04050.t1 | MTR_5g027570 | 61.333 | 75 | 26 | 2 | 140 | 212 | 88 | 161 | 1.42e-22 | 94.4 |
| MS.gene04050.t1 | MTR_5g088060 | 65.714 | 70 | 20 | 2 | 146 | 212 | 274 | 342 | 1.63e-22 | 97.8 |
| MS.gene04050.t1 | MTR_5g488160 | 65.714 | 70 | 20 | 2 | 146 | 212 | 274 | 342 | 1.63e-22 | 97.8 |
| MS.gene04050.t1 | MTR_5g075760 | 36.000 | 175 | 88 | 5 | 31 | 200 | 5 | 160 | 2.22e-22 | 93.6 |
| MS.gene04050.t1 | MTR_5g075790 | 34.737 | 190 | 91 | 6 | 16 | 200 | 7 | 168 | 4.53e-22 | 92.8 |
| MS.gene04050.t1 | MTR_5g027550 | 60.526 | 76 | 27 | 1 | 140 | 212 | 73 | 148 | 2.57e-20 | 88.2 |
| MS.gene04050.t1 | MTR_5g020170 | 50.000 | 68 | 34 | 0 | 34 | 101 | 14 | 81 | 1.28e-19 | 82.4 |
| MS.gene04050.t1 | MTR_3g116720 | 57.576 | 66 | 28 | 0 | 39 | 104 | 16 | 81 | 1.51e-19 | 82.0 |
| MS.gene04050.t1 | MTR_1g022290 | 52.857 | 70 | 33 | 0 | 36 | 105 | 4 | 73 | 2.47e-19 | 81.6 |
| MS.gene04050.t1 | MTR_3g111880 | 48.052 | 77 | 40 | 0 | 36 | 112 | 4 | 80 | 8.98e-19 | 80.1 |
| MS.gene04050.t1 | MTR_8g077380 | 52.778 | 72 | 33 | 1 | 36 | 107 | 2 | 72 | 9.30e-19 | 79.3 |
| MS.gene04050.t1 | MTR_8g077390 | 52.778 | 72 | 33 | 1 | 36 | 107 | 2 | 72 | 9.30e-19 | 79.3 |
| MS.gene04050.t1 | MTR_8g077360 | 54.412 | 68 | 30 | 1 | 36 | 103 | 2 | 68 | 9.85e-19 | 79.3 |
| MS.gene04050.t1 | MTR_1g048660 | 56.250 | 64 | 28 | 0 | 145 | 208 | 13 | 76 | 1.16e-18 | 79.7 |
| MS.gene04050.t1 | MTR_6g004250 | 49.254 | 67 | 34 | 0 | 36 | 102 | 7 | 73 | 8.12e-16 | 71.6 |
| MS.gene04050.t1 | MTR_5g020540 | 55.738 | 61 | 26 | 1 | 39 | 99 | 4 | 63 | 1.70e-15 | 70.5 |
| MS.gene04050.t1 | MTR_8g077420 | 52.174 | 69 | 31 | 2 | 39 | 107 | 5 | 71 | 2.71e-15 | 70.1 |
| MS.gene04050.t1 | MTR_3g013440 | 50.704 | 71 | 34 | 1 | 32 | 101 | 3 | 73 | 1.38e-14 | 68.6 |
| MS.gene04050.t1 | MTR_7g089210 | 52.308 | 65 | 31 | 0 | 43 | 107 | 16 | 80 | 2.92e-14 | 67.8 |
| MS.gene04050.t1 | MTR_3g070110 | 50.667 | 75 | 30 | 1 | 146 | 213 | 97 | 171 | 3.19e-14 | 70.9 |
| MS.gene04050.t1 | MTR_1g083180 | 52.113 | 71 | 29 | 2 | 146 | 212 | 63 | 132 | 2.00e-13 | 68.2 |
| MS.gene04050.t1 | MTR_6g043480 | 53.191 | 47 | 22 | 0 | 144 | 190 | 107 | 153 | 1.02e-11 | 63.9 |
| MS.gene04050.t1 | MTR_8g072990 | 43.056 | 72 | 36 | 2 | 141 | 208 | 97 | 167 | 1.32e-11 | 63.9 |
| MS.gene04050.t1 | MTR_3g111920 | 41.667 | 72 | 42 | 0 | 39 | 110 | 3 | 74 | 1.37e-11 | 60.1 |
| MS.gene04050.t1 | MTR_6g043490 | 53.191 | 47 | 22 | 0 | 144 | 190 | 107 | 153 | 1.96e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04050.t1 | AT5G58900 | 69.500 | 200 | 52 | 3 | 23 | 215 | 15 | 212 | 1.18e-96 | 287 |
| MS.gene04050.t1 | AT2G38090 | 62.332 | 223 | 57 | 4 | 1 | 213 | 5 | 210 | 2.41e-95 | 284 |
| MS.gene04050.t1 | AT5G05790 | 63.874 | 191 | 62 | 3 | 35 | 224 | 27 | 211 | 3.82e-79 | 242 |
| MS.gene04050.t1 | AT5G05790 | 63.874 | 191 | 62 | 3 | 35 | 224 | 27 | 211 | 3.82e-79 | 242 |
| MS.gene04050.t1 | AT3G11280 | 55.000 | 240 | 83 | 6 | 39 | 266 | 33 | 259 | 3.99e-78 | 239 |
| MS.gene04050.t1 | AT3G11280 | 55.000 | 240 | 83 | 6 | 39 | 266 | 33 | 259 | 3.99e-78 | 239 |
| MS.gene04050.t1 | AT5G01200 | 57.843 | 204 | 66 | 5 | 23 | 213 | 19 | 215 | 1.84e-73 | 228 |
| MS.gene04050.t1 | AT5G08520 | 51.075 | 186 | 90 | 1 | 33 | 217 | 6 | 191 | 4.90e-58 | 189 |
| MS.gene04050.t1 | AT1G49010 | 47.716 | 197 | 78 | 3 | 39 | 212 | 8 | 202 | 1.33e-51 | 173 |
| MS.gene04050.t1 | AT5G04760 | 49.162 | 179 | 79 | 3 | 36 | 214 | 3 | 169 | 6.83e-51 | 168 |
| MS.gene04050.t1 | AT5G23650 | 38.866 | 247 | 129 | 5 | 33 | 275 | 7 | 235 | 1.36e-42 | 150 |
| MS.gene04050.t1 | AT5G47390 | 59.140 | 93 | 38 | 0 | 124 | 216 | 76 | 168 | 7.46e-32 | 122 |
| MS.gene04050.t1 | AT3G10580 | 35.714 | 224 | 109 | 8 | 39 | 250 | 8 | 208 | 7.46e-31 | 117 |
| MS.gene04050.t1 | AT3G10580 | 35.714 | 224 | 109 | 8 | 39 | 250 | 8 | 208 | 1.21e-30 | 117 |
| MS.gene04050.t1 | AT4G09450 | 40.116 | 172 | 82 | 3 | 38 | 209 | 6 | 156 | 1.89e-29 | 112 |
| MS.gene04050.t1 | AT5G61620 | 54.206 | 107 | 45 | 1 | 114 | 220 | 82 | 184 | 6.16e-29 | 113 |
| MS.gene04050.t1 | AT5G56840 | 57.609 | 92 | 36 | 2 | 130 | 220 | 79 | 168 | 9.23e-28 | 108 |
| MS.gene04050.t1 | AT3G16350 | 60.784 | 102 | 30 | 2 | 124 | 225 | 125 | 216 | 1.59e-27 | 110 |
| MS.gene04050.t1 | AT1G70000 | 68.354 | 79 | 23 | 1 | 131 | 209 | 87 | 163 | 3.26e-27 | 107 |
| MS.gene04050.t1 | AT1G70000 | 68.354 | 79 | 23 | 1 | 131 | 209 | 87 | 163 | 3.26e-27 | 107 |
| MS.gene04050.t1 | AT1G74840 | 57.692 | 104 | 42 | 1 | 139 | 240 | 91 | 194 | 5.10e-26 | 103 |
| MS.gene04050.t1 | AT1G74840 | 57.692 | 104 | 42 | 1 | 139 | 240 | 91 | 194 | 7.87e-26 | 103 |
| MS.gene04050.t1 | AT1G19000 | 62.791 | 86 | 31 | 1 | 140 | 224 | 98 | 183 | 2.28e-25 | 103 |
| MS.gene04050.t1 | AT1G19000 | 62.791 | 86 | 31 | 1 | 140 | 224 | 98 | 183 | 2.28e-25 | 103 |
| MS.gene04050.t1 | AT1G75250 | 54.667 | 75 | 34 | 0 | 29 | 103 | 2 | 76 | 3.43e-21 | 87.0 |
| MS.gene04050.t1 | AT1G75250 | 54.667 | 75 | 34 | 0 | 29 | 103 | 2 | 76 | 5.21e-21 | 87.4 |
| MS.gene04050.t1 | AT3G10590 | 37.017 | 181 | 98 | 7 | 36 | 209 | 4 | 175 | 5.70e-20 | 86.7 |
| MS.gene04050.t1 | AT2G21650 | 54.545 | 66 | 30 | 0 | 39 | 104 | 14 | 79 | 1.88e-17 | 77.0 |
| MS.gene04050.t1 | AT4G39250 | 46.377 | 69 | 37 | 0 | 39 | 107 | 14 | 82 | 6.70e-16 | 72.8 |
| MS.gene04050.t1 | AT1G19510 | 55.738 | 61 | 27 | 0 | 43 | 103 | 16 | 76 | 9.36e-16 | 72.4 |
| MS.gene04050.t1 | AT2G18328 | 51.613 | 62 | 30 | 0 | 43 | 104 | 15 | 76 | 2.77e-12 | 62.0 |
| MS.gene04050.t1 | AT4G36570 | 61.364 | 44 | 17 | 0 | 39 | 82 | 12 | 55 | 6.21e-11 | 57.8 |
Find 59 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGAGTCTTCTTATTT+TGG | 0.078101 | 3.3:+50387672 | MS.gene04050:CDS |
| ATTTGACAGGTTATTTCTAT+TGG | 0.210653 | 3.3:+50387248 | MS.gene04050:intron |
| GGAGTTAATAATAACTCTTA+TGG | 0.241432 | 3.3:+50387612 | MS.gene04050:CDS |
| TATTTCATCAGACAACTTTC+AGG | 0.257079 | 3.3:+50387366 | MS.gene04050:CDS |
| TTAGATTGGGTGAATTCTTC+TGG | 0.292652 | 3.3:+50386629 | MS.gene04050:CDS |
| AAACCAATTGTTGGTATAGT+TGG | 0.296807 | 3.3:-50386351 | None:intergenic |
| TTCACCCAATCTAAGGTAAA+AGG | 0.308169 | 3.3:-50386620 | None:intergenic |
| GCTGGTTTGGTTCCAATTCC+TGG | 0.315843 | 3.3:+50386575 | MS.gene04050:CDS |
| GGTGCATGAGGGTGAGAATT+TGG | 0.327156 | 3.3:-50386314 | None:intergenic |
| CCTTTCTTCCTTTCCTGATC+AGG | 0.333627 | 3.3:-50386704 | None:intergenic |
| TTTGACAGGTTATTTCTATT+GGG | 0.339731 | 3.3:+50387249 | MS.gene04050:intron |
| AGTGGAAAGAGAGGCTCTTC+TGG | 0.344816 | 3.3:+50386674 | MS.gene04050:CDS |
| CTCTTGGTTTCTTCTGAAGT+TGG | 0.347825 | 3.3:-50387462 | None:intergenic |
| ATCTTACTTGTGTTCTTCTT+CGG | 0.354438 | 3.3:-50386738 | None:intergenic |
| GCATTAACAGGAGCACAAAA+TGG | 0.365638 | 3.3:+50386393 | MS.gene04050:CDS |
| AGAAGAATTCACCCAATCTA+AGG | 0.374549 | 3.3:-50386627 | None:intergenic |
| ACATCAACAACACTCTTTCC+AGG | 0.376605 | 3.3:-50386506 | None:intergenic |
| TACTTGTTCATAATCATGTT+TGG | 0.382661 | 3.3:-50387495 | None:intergenic |
| TGCTCTTGCAGTTTATGATA+AGG | 0.387222 | 3.3:+50386445 | MS.gene04050:CDS |
| ATTCCAACTATACCAACAAT+TGG | 0.389716 | 3.3:+50386348 | MS.gene04050:CDS |
| ATTGTAGCAATAGCATTAAC+AGG | 0.398247 | 3.3:+50386381 | MS.gene04050:CDS |
| GATGAATCAGTATAAGGAAT+TGG | 0.401455 | 3.3:+50386529 | MS.gene04050:CDS |
| GTAGTACTATAACCAGGAAT+TGG | 0.407318 | 3.3:-50386587 | None:intergenic |
| GTTGTTGAGAAGATTGCATT+TGG | 0.408588 | 3.3:-50387719 | None:intergenic |
| GTTTGGTGAAGTTGATCTCT+TGG | 0.418126 | 3.3:-50387478 | None:intergenic |
| TCAAACAATTTGTTCTCTGC+AGG | 0.426400 | 3.3:-50386419 | None:intergenic |
| GTGAATTCTTCTGGTTATGA+TGG | 0.427738 | 3.3:+50386638 | MS.gene04050:CDS |
| TTGTGTTCTTCTTCGGTCCA+TGG | 0.429989 | 3.3:-50386731 | None:intergenic |
| GATGTTTGTAATATAGAAGC+TGG | 0.431912 | 3.3:+50386557 | MS.gene04050:CDS |
| AAAAGTATGGAAAAGGTGAT+TGG | 0.434556 | 3.3:+50387277 | MS.gene04050:CDS |
| TTGTAATATAGAAGCTGGTT+TGG | 0.450084 | 3.3:+50386562 | MS.gene04050:CDS |
| GAGTTATTATTAACTCCATA+AGG | 0.453193 | 3.3:-50387606 | None:intergenic |
| TGATGTGATGAATCAGTATA+AGG | 0.454237 | 3.3:+50386523 | MS.gene04050:CDS |
| TTCTGGTAGATCTCCTGATC+AGG | 0.477520 | 3.3:+50386691 | MS.gene04050:CDS |
| CAAGGAACTTTGTGATCACT+AGG | 0.491493 | 3.3:+50387310 | MS.gene04050:CDS |
| TCTTATGGATTTAAAATGCA+AGG | 0.530791 | 3.3:+50387627 | MS.gene04050:CDS |
| GCTACCTTATGCCACCGATC+CGG | 0.536074 | 3.3:-50386473 | None:intergenic |
| AGAGGATTTAGTGGAAAGAG+AGG | 0.538143 | 3.3:+50386665 | MS.gene04050:CDS |
| CCTGATCAGGAAAGGAAGAA+AGG | 0.540469 | 3.3:+50386704 | MS.gene04050:CDS |
| TTGAATGCTGTCATAGTAGC+TGG | 0.544765 | 3.3:-50387555 | None:intergenic |
| ATGAAAACTTGTTCATGTGA+AGG | 0.546854 | 3.3:-50387579 | None:intergenic |
| AAGGTAGCTGCAATGATCCC+TGG | 0.550717 | 3.3:+50386488 | MS.gene04050:CDS |
| GCATGGCTAGCTACTTGTGT+TGG | 0.551417 | 3.3:-50387336 | None:intergenic |
| TACGCCGGATCGGTGGCATA+AGG | 0.566659 | 3.3:+50386469 | MS.gene04050:CDS |
| CTCAGAAGTGGTGTTAGCAG+TGG | 0.576504 | 3.3:-50387520 | None:intergenic |
| TGATGAAATATTTCTGAGCA+TGG | 0.587728 | 3.3:-50387353 | None:intergenic |
| ATGATAAGGATACGCCGGAT+CGG | 0.588112 | 3.3:+50386459 | MS.gene04050:CDS |
| CTGAAAATGCATCTCAGAAG+TGG | 0.589832 | 3.3:-50387532 | None:intergenic |
| AAATAAGAAGACTCATGAAG+AGG | 0.592849 | 3.3:-50387669 | None:intergenic |
| CATCAACAACACTCTTTCCA+GGG | 0.594776 | 3.3:-50386505 | None:intergenic |
| GTGATTGGAGAAACATATCA+AGG | 0.596845 | 3.3:+50387292 | MS.gene04050:CDS |
| GTAGATCTCCTGATCAGGAA+AGG | 0.600023 | 3.3:+50386696 | MS.gene04050:CDS |
| TTCATCAGACAACTTTCAGG+AGG | 0.604647 | 3.3:+50387369 | MS.gene04050:CDS |
| AAAGGAAGAAAGGTGTGCCA+TGG | 0.605391 | 3.3:+50386714 | MS.gene04050:CDS |
| ATAAGGATACGCCGGATCGG+TGG | 0.605758 | 3.3:+50386462 | MS.gene04050:CDS |
| TGGACCTCAGACACAAAACA+TGG | 0.622490 | 3.3:+50387692 | MS.gene04050:CDS |
| AGTTTATGATAAGGATACGC+CGG | 0.649185 | 3.3:+50386454 | MS.gene04050:CDS |
| GCAGCAGTAGTACTATAACC+AGG | 0.674867 | 3.3:-50386593 | None:intergenic |
| TTTGAACAAATGGTGCATGA+GGG | 0.682304 | 3.3:-50386325 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTAAGTATTTTTGA+GGG | + | chr3.3:50387163-50387182 | MS.gene04050:intron | 10.0% |
| !!! | TATTTATTTAAGTATTTTTG+AGG | + | chr3.3:50387162-50387181 | MS.gene04050:intron | 10.0% |
| !!! | ATATTTATTTAAGTTGTTGA+AGG | + | chr3.3:50387190-50387209 | MS.gene04050:intron | 15.0% |
| !!! | TATTTATTTAAGTTGTTGAA+GGG | + | chr3.3:50387191-50387210 | MS.gene04050:intron | 15.0% |
| !! | CATAAACTTTAAATTACATC+CGG | - | chr3.3:50387023-50387042 | None:intergenic | 20.0% |
| !! | GATTATGAAAATAATTTGAC+AGG | + | chr3.3:50387235-50387254 | MS.gene04050:intron | 20.0% |
| ! | AACTAATATTAGTGCATGTT+TGG | + | chr3.3:50386871-50386890 | MS.gene04050:intron | 25.0% |
| ! | ATCTGTAGTTATTAAGAGTT+AGG | + | chr3.3:50387079-50387098 | MS.gene04050:intron | 25.0% |
| ! | CTTAACTAATAACTACCAAT+AGG | - | chr3.3:50387110-50387129 | None:intergenic | 25.0% |
| ! | GAGTTATTATTAACTCCATA+AGG | - | chr3.3:50387609-50387628 | None:intergenic | 25.0% |
| ! | GGAGTTAATAATAACTCTTA+TGG | + | chr3.3:50387612-50387631 | MS.gene04050:CDS | 25.0% |
| ! | TAAAGTTTATGTATGAACCT+AGG | + | chr3.3:50387032-50387051 | MS.gene04050:intron | 25.0% |
| ! | TACTTGTTCATAATCATGTT+TGG | - | chr3.3:50387498-50387517 | None:intergenic | 25.0% |
| !! | TAGTTGGAATTTTGAACAAA+TGG | - | chr3.3:50386338-50386357 | None:intergenic | 25.0% |
| !! | TATGTGAAGATTTTACTGTT+TGG | + | chr3.3:50386821-50386840 | MS.gene04050:intron | 25.0% |
| !! | TCTTATGGATTTAAAATGCA+AGG | + | chr3.3:50387627-50387646 | MS.gene04050:CDS | 25.0% |
| !! | TGACAAAAGCTACATTTTAA+AGG | - | chr3.3:50386933-50386952 | None:intergenic | 25.0% |
| !!! | ATTTGACAGGTTATTTCTAT+TGG | + | chr3.3:50387248-50387267 | MS.gene04050:intron | 25.0% |
| !!! | TTTGACAGGTTATTTCTATT+GGG | + | chr3.3:50387249-50387268 | MS.gene04050:intron | 25.0% |
| AAACCAATTGTTGGTATAGT+TGG | - | chr3.3:50386354-50386373 | None:intergenic | 30.0% | |
| AAATAAGAAGACTCATGAAG+AGG | - | chr3.3:50387672-50387691 | None:intergenic | 30.0% | |
| AAGAGTTAGGTATTTCCTAT+TGG | + | chr3.3:50387092-50387111 | MS.gene04050:intron | 30.0% | |
| ATCTTACTTGTGTTCTTCTT+CGG | - | chr3.3:50386741-50386760 | None:intergenic | 30.0% | |
| ATCTTCCAAAAACCAATTGT+TGG | - | chr3.3:50386363-50386382 | None:intergenic | 30.0% | |
| ATTCCAACTATACCAACAAT+TGG | + | chr3.3:50386348-50386367 | MS.gene04050:CDS | 30.0% | |
| ATTGTAGCAATAGCATTAAC+AGG | + | chr3.3:50386381-50386400 | MS.gene04050:CDS | 30.0% | |
| GATGAATCAGTATAAGGAAT+TGG | + | chr3.3:50386529-50386548 | MS.gene04050:CDS | 30.0% | |
| GATGTTTGTAATATAGAAGC+TGG | + | chr3.3:50386557-50386576 | MS.gene04050:CDS | 30.0% | |
| TATTTCATCAGACAACTTTC+AGG | + | chr3.3:50387366-50387385 | MS.gene04050:CDS | 30.0% | |
| TGATGTGATGAATCAGTATA+AGG | + | chr3.3:50386523-50386542 | MS.gene04050:CDS | 30.0% | |
| TTGTAATATAGAAGCTGGTT+TGG | + | chr3.3:50386562-50386581 | MS.gene04050:CDS | 30.0% | |
| ! | AAAAGTATGGAAAAGGTGAT+TGG | + | chr3.3:50387277-50387296 | MS.gene04050:CDS | 30.0% |
| ! | ATGAAAACTTGTTCATGTGA+AGG | - | chr3.3:50387582-50387601 | None:intergenic | 30.0% |
| ! | TGATGAAATATTTCTGAGCA+TGG | - | chr3.3:50387356-50387375 | None:intergenic | 30.0% |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr3.3:50386616-50386635 | MS.gene04050:CDS | 30.0% |
| ! | TTTTGTCAAAATCACGATGA+CGG | + | chr3.3:50386945-50386964 | MS.gene04050:intron | 30.0% |
| !! | CTTCATGAGTCTTCTTATTT+TGG | + | chr3.3:50387672-50387691 | MS.gene04050:CDS | 30.0% |
| !!! | CTATACCAACAATTGGTTTT+TGG | + | chr3.3:50386355-50386374 | MS.gene04050:CDS | 30.0% |
| ACTTTAAATTACATCCGGTC+AGG | - | chr3.3:50387018-50387037 | None:intergenic | 35.0% | |
| AGAAGAATTCACCCAATCTA+AGG | - | chr3.3:50386630-50386649 | None:intergenic | 35.0% | |
| AGTTTATGATAAGGATACGC+CGG | + | chr3.3:50386454-50386473 | MS.gene04050:CDS | 35.0% | |
| CTATTGGGTCTGAAAAAGTA+TGG | + | chr3.3:50387264-50387283 | MS.gene04050:CDS | 35.0% | |
| GTAGTACTATAACCAGGAAT+TGG | - | chr3.3:50386590-50386609 | None:intergenic | 35.0% | |
| GTGATTGGAGAAACATATCA+AGG | + | chr3.3:50387292-50387311 | MS.gene04050:CDS | 35.0% | |
| GTTGTTGAGAAGATTGCATT+TGG | - | chr3.3:50387722-50387741 | None:intergenic | 35.0% | |
| GTTTGGATTGACGGTTAATT+TGG | - | chr3.3:50386990-50387009 | None:intergenic | 35.0% | |
| TGCTCTTGCAGTTTATGATA+AGG | + | chr3.3:50386445-50386464 | MS.gene04050:CDS | 35.0% | |
| TTAGATTGGGTGAATTCTTC+TGG | + | chr3.3:50386629-50386648 | MS.gene04050:CDS | 35.0% | |
| TTATGTATGAACCTAGGAGT+TGG | + | chr3.3:50387038-50387057 | MS.gene04050:intron | 35.0% | |
| TTTGAACAAATGGTGCATGA+GGG | - | chr3.3:50386328-50386347 | None:intergenic | 35.0% | |
| ! | AAAACCATGTTTTGTGTCTG+AGG | - | chr3.3:50387699-50387718 | None:intergenic | 35.0% |
| ! | CAAGTTTTCATGTCTCCTTA+TGG | + | chr3.3:50387591-50387610 | MS.gene04050:CDS | 35.0% |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr3.3:50386615-50386634 | MS.gene04050:CDS | 35.0% |
| ! | GGTCTGAAAAAGTATGGAAA+AGG | + | chr3.3:50387270-50387289 | MS.gene04050:CDS | 35.0% |
| ! | GTGAATTCTTCTGGTTATGA+TGG | + | chr3.3:50386638-50386657 | MS.gene04050:CDS | 35.0% |
| ! | TCAAACAATTTGTTCTCTGC+AGG | - | chr3.3:50386422-50386441 | None:intergenic | 35.0% |
| ! | TTCACCCAATCTAAGGTAAA+AGG | - | chr3.3:50386623-50386642 | None:intergenic | 35.0% |
| ! | TTTTGAACAAATGGTGCATG+AGG | - | chr3.3:50386329-50386348 | None:intergenic | 35.0% |
| !!! | GATGGTTTTAGAGGATTTAG+TGG | + | chr3.3:50386656-50386675 | MS.gene04050:CDS | 35.0% |
| !!! | TCTGGTTATGATGGTTTTAG+AGG | + | chr3.3:50386647-50386666 | MS.gene04050:CDS | 35.0% |
| ACATCAACAACACTCTTTCC+AGG | - | chr3.3:50386509-50386528 | None:intergenic | 40.0% | |
| AGAGGATTTAGTGGAAAGAG+AGG | + | chr3.3:50386665-50386684 | MS.gene04050:CDS | 40.0% | |
| ATTTCACTTCACCAACTCCT+AGG | - | chr3.3:50387052-50387071 | None:intergenic | 40.0% | |
| CAAGGAACTTTGTGATCACT+AGG | + | chr3.3:50387310-50387329 | MS.gene04050:CDS | 40.0% | |
| CATCAACAACACTCTTTCCA+GGG | - | chr3.3:50386508-50386527 | None:intergenic | 40.0% | |
| CTGAAAATGCATCTCAGAAG+TGG | - | chr3.3:50387535-50387554 | None:intergenic | 40.0% | |
| TTCATCAGACAACTTTCAGG+AGG | + | chr3.3:50387369-50387388 | MS.gene04050:CDS | 40.0% | |
| TTGAATGCTGTCATAGTAGC+TGG | - | chr3.3:50387558-50387577 | None:intergenic | 40.0% | |
| ! | GCATTAACAGGAGCACAAAA+TGG | + | chr3.3:50386393-50386412 | MS.gene04050:CDS | 40.0% |
| ! | GTTTGGTGAAGTTGATCTCT+TGG | - | chr3.3:50387481-50387500 | None:intergenic | 40.0% |
| !! | CTCTTGGTTTCTTCTGAAGT+TGG | - | chr3.3:50387465-50387484 | None:intergenic | 40.0% |
| AATCCAAACATGCACCTGAC+CGG | + | chr3.3:50387001-50387020 | MS.gene04050:intron | 45.0% | |
| ATGATAAGGATACGCCGGAT+CGG | + | chr3.3:50386459-50386478 | MS.gene04050:CDS | 45.0% | |
| CAGGTGCATGTTTGGATTGA+CGG | - | chr3.3:50386999-50387018 | None:intergenic | 45.0% | |
| CCTGATCAGGAAAGGAAGAA+AGG | + | chr3.3:50386704-50386723 | MS.gene04050:CDS | 45.0% | |
| CCTTTCTTCCTTTCCTGATC+AGG | - | chr3.3:50386707-50386726 | None:intergenic | 45.0% | |
| GCAGCAGTAGTACTATAACC+AGG | - | chr3.3:50386596-50386615 | None:intergenic | 45.0% | |
| GTAGATCTCCTGATCAGGAA+AGG | + | chr3.3:50386696-50386715 | MS.gene04050:CDS | 45.0% | |
| TGGACCTCAGACACAAAACA+TGG | + | chr3.3:50387692-50387711 | MS.gene04050:CDS | 45.0% | |
| TTCTGGTAGATCTCCTGATC+AGG | + | chr3.3:50386691-50386710 | MS.gene04050:CDS | 45.0% | |
| TTGTGTTCTTCTTCGGTCCA+TGG | - | chr3.3:50386734-50386753 | None:intergenic | 45.0% | |
| ! | AAAGGAAGAAAGGTGTGCCA+TGG | + | chr3.3:50386714-50386733 | MS.gene04050:CDS | 45.0% |
| AAGGTAGCTGCAATGATCCC+TGG | + | chr3.3:50386488-50386507 | MS.gene04050:CDS | 50.0% | |
| AGTGGAAAGAGAGGCTCTTC+TGG | + | chr3.3:50386674-50386693 | MS.gene04050:CDS | 50.0% | |
| GGTGCATGAGGGTGAGAATT+TGG | - | chr3.3:50386317-50386336 | None:intergenic | 50.0% | |
| ! | CTCAGAAGTGGTGTTAGCAG+TGG | - | chr3.3:50387523-50387542 | None:intergenic | 50.0% |
| ! | GCATGGCTAGCTACTTGTGT+TGG | - | chr3.3:50387339-50387358 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGTTCCAATTCC+TGG | + | chr3.3:50386575-50386594 | MS.gene04050:CDS | 50.0% |
| ATAAGGATACGCCGGATCGG+TGG | + | chr3.3:50386462-50386481 | MS.gene04050:CDS | 55.0% | |
| CATCCGGTCAGGTGCATGTT+TGG | - | chr3.3:50387007-50387026 | None:intergenic | 55.0% | |
| GCTACCTTATGCCACCGATC+CGG | - | chr3.3:50386476-50386495 | None:intergenic | 55.0% | |
| TACGCCGGATCGGTGGCATA+AGG | + | chr3.3:50386469-50386488 | MS.gene04050:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 50386299 | 50387758 | 50386299 | ID=MS.gene04050 |
| chr3.3 | mRNA | 50386299 | 50387758 | 50386299 | ID=MS.gene04050.t1;Parent=MS.gene04050 |
| chr3.3 | exon | 50386299 | 50386753 | 50386299 | ID=MS.gene04050.t1.exon1;Parent=MS.gene04050.t1 |
| chr3.3 | CDS | 50386299 | 50386753 | 50386299 | ID=cds.MS.gene04050.t1;Parent=MS.gene04050.t1 |
| chr3.3 | exon | 50387257 | 50387758 | 50387257 | ID=MS.gene04050.t1.exon2;Parent=MS.gene04050.t1 |
| chr3.3 | CDS | 50387257 | 50387758 | 50387257 | ID=cds.MS.gene04050.t1;Parent=MS.gene04050.t1 |
| Gene Sequence |
| Protein sequence |
