AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene036893

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036893.t1 MTR_4g111975 97.705 305 5 1 1 305 1 303 0.0 612
MS.gene036893.t1 MTR_8g063600 44.483 290 96 12 8 280 10 251 1.31e-63 202
MS.gene036893.t1 MTR_5g069710 48.058 206 68 5 8 208 29 200 1.68e-54 179
MS.gene036893.t1 MTR_3g462790 47.867 211 72 5 8 213 43 220 6.33e-54 179
MS.gene036893.t1 MTR_7g067080 36.774 310 144 9 3 294 30 305 1.28e-53 177
MS.gene036893.t1 MTR_1g111830 46.040 202 77 3 8 209 24 193 1.47e-53 175
MS.gene036893.t1 MTR_8g063870 35.647 317 134 11 1 298 1 266 1.27e-47 161
MS.gene036893.t1 MTR_5g081860 41.509 212 82 5 8 214 27 201 1.71e-47 160
MS.gene036893.t1 MTR_1g033620 57.500 160 45 5 155 298 20 172 2.27e-45 154
MS.gene036893.t1 MTR_4g100630 57.391 115 46 2 101 213 55 168 5.31e-35 129
MS.gene036893.t1 MTR_6g092540 73.239 71 19 0 134 204 91 161 1.10e-33 125
MS.gene036893.t1 MTR_8g101650 73.239 71 18 1 134 204 99 168 4.11e-33 123
MS.gene036893.t1 MTR_2g100930 61.053 95 31 1 110 204 85 173 1.25e-32 124
MS.gene036893.t1 MTR_5g037080 59.184 98 30 1 109 206 81 168 5.16e-28 110
MS.gene036893.t1 MTR_1g033600 41.722 151 63 4 8 155 12 140 3.84e-26 100
MS.gene036893.t1 MTR_0036s0260 67.164 67 22 0 140 206 28 94 6.69e-26 102
MS.gene036893.t1 MTR_4g107230 68.354 79 25 0 128 206 72 150 2.16e-25 102
MS.gene036893.t1 MTR_2g090305 65.672 67 23 0 140 206 28 94 1.15e-23 95.9
MS.gene036893.t1 MTR_5g088010 54.430 79 32 2 136 211 56 133 5.51e-23 95.5
MS.gene036893.t1 MTR_5g027570 50.617 81 38 1 136 214 88 168 1.08e-22 94.4
MS.gene036893.t1 MTR_3g104370 56.410 78 31 2 130 204 81 158 1.94e-22 93.6
MS.gene036893.t1 MTR_4g015130 67.797 59 19 0 150 208 3 61 4.60e-22 88.6
MS.gene036893.t1 MTR_5g088060 56.164 73 28 2 142 211 274 345 9.49e-21 92.4
MS.gene036893.t1 MTR_5g488160 56.164 73 28 2 142 211 274 345 9.49e-21 92.4
MS.gene036893.t1 MTR_5g027550 48.780 82 39 1 136 214 73 154 5.79e-18 81.6
MS.gene036893.t1 MTR_5g075760 32.512 203 92 10 8 207 13 173 1.04e-17 80.5
MS.gene036893.t1 MTR_1g048660 50.000 64 32 0 141 204 13 76 2.12e-17 76.3
MS.gene036893.t1 MTR_5g075790 32.512 203 91 10 8 207 22 181 2.80e-16 76.6
MS.gene036893.t1 MTR_1g022290 48.000 75 35 2 1 75 1 71 4.23e-16 72.8
MS.gene036893.t1 MTR_3g111880 48.000 75 36 2 3 77 2 73 6.54e-16 72.0
MS.gene036893.t1 MTR_1g083180 48.611 72 33 2 142 210 63 133 6.96e-14 69.3
MS.gene036893.t1 MTR_6g004250 44.595 74 38 1 2 75 4 74 8.64e-14 65.9
MS.gene036893.t1 MTR_3g116720 40.000 70 39 1 4 73 12 78 2.35e-12 62.0
MS.gene036893.t1 MTR_8g072990 47.170 53 28 0 137 189 97 149 1.10e-11 63.9
MS.gene036893.t1 MTR_6g043480 47.170 53 28 0 137 189 104 156 1.53e-11 63.5
MS.gene036893.t1 MTR_6g043490 38.272 81 41 2 137 213 104 179 1.79e-11 63.2
MS.gene036893.t1 MTR_3g070110 45.946 74 33 2 142 208 97 170 9.94e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene036893.t1 AT1G49010 54.006 337 99 11 1 304 1 314 1.13e-94 283
MS.gene036893.t1 AT5G08520 50.680 294 95 9 3 285 7 261 1.37e-80 246
MS.gene036893.t1 AT2G38090 45.366 205 90 3 5 208 26 209 5.72e-56 183
MS.gene036893.t1 AT5G58900 46.977 215 85 6 2 214 28 215 1.43e-53 177
MS.gene036893.t1 AT5G01200 44.660 206 92 4 6 208 28 214 1.41e-51 171
MS.gene036893.t1 AT5G23650 43.750 224 100 4 3 226 8 205 2.92e-50 169
MS.gene036893.t1 AT5G04760 41.629 221 90 4 8 228 6 187 2.11e-47 158
MS.gene036893.t1 AT5G05790 37.500 272 122 8 1 256 24 263 9.71e-47 159
MS.gene036893.t1 AT5G05790 37.500 272 122 8 1 256 24 263 9.71e-47 159
MS.gene036893.t1 AT3G11280 45.050 202 71 4 8 208 33 195 1.84e-46 157
MS.gene036893.t1 AT3G11280 45.050 202 71 4 8 208 33 195 1.84e-46 157
MS.gene036893.t1 AT5G47390 57.798 109 43 1 114 219 67 175 9.07e-35 129
MS.gene036893.t1 AT3G10580 38.009 221 86 8 1 221 1 170 3.24e-34 125
MS.gene036893.t1 AT3G10580 38.009 221 86 8 1 221 1 170 5.99e-34 125
MS.gene036893.t1 AT5G61620 38.265 196 89 7 114 300 84 256 1.22e-30 117
MS.gene036893.t1 AT4G09450 36.245 229 90 7 8 231 7 184 2.03e-29 111
MS.gene036893.t1 AT5G56840 56.818 88 37 1 123 209 74 161 5.80e-29 111
MS.gene036893.t1 AT1G70000 61.458 96 27 1 110 205 78 163 8.37e-28 108
MS.gene036893.t1 AT1G70000 61.458 96 27 1 110 205 78 163 8.37e-28 108
MS.gene036893.t1 AT1G74840 45.122 164 83 4 118 276 74 235 3.27e-26 103
MS.gene036893.t1 AT3G16350 65.385 78 20 1 110 187 114 184 3.60e-26 107
MS.gene036893.t1 AT1G74840 48.611 144 67 4 118 256 74 215 3.90e-26 104
MS.gene036893.t1 AT1G19000 55.556 108 45 2 130 237 92 196 1.22e-23 98.2
MS.gene036893.t1 AT1G19000 55.556 108 45 2 130 237 92 196 1.22e-23 98.2
MS.gene036893.t1 AT3G10590 47.917 96 48 2 125 219 96 190 4.76e-18 81.3
MS.gene036893.t1 AT4G39250 42.424 66 35 1 8 73 14 76 5.29e-13 64.7
MS.gene036893.t1 AT1G75250 40.845 71 39 1 3 73 7 74 2.57e-12 62.4
MS.gene036893.t1 AT1G75250 40.845 71 39 1 3 73 7 74 1.29e-11 61.6

Find 72 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATTCATTAGCATAATT+TGG 0.179151 8.1:+13527566 None:intergenic
AAGAGATCAAGTTGTAATTT+TGG 0.196816 8.1:-13527491 MS.gene036893:CDS
CATCATCCTCCTGGTGGTTT+AGG 0.251182 8.1:-13526755 MS.gene036893:CDS
TTACTCGGTTTAGACAAATT+TGG 0.255781 8.1:-13527040 MS.gene036893:CDS
TTCAAACAAAGATTCTTCTA+AGG 0.298166 8.1:-13527531 MS.gene036893:CDS
CCTTCAAATACAATGGGTTT+AGG 0.313838 8.1:-13526806 MS.gene036893:CDS
ACAAATTTGGAAAAGGAGAT+TGG 0.314475 8.1:-13527027 MS.gene036893:CDS
ACGCACAAAAGTATTTCATT+AGG 0.364378 8.1:-13526949 MS.gene036893:CDS
ATATGTCCCCAACAAAAGTA+TGG 0.368701 8.1:-13527660 MS.gene036893:CDS
TGTTGCTCCTCCTGCTCATA+TGG 0.385813 8.1:-13526702 MS.gene036893:CDS
TTACCATGTTGACCTGTTAT+CGG 0.390780 8.1:+13526836 None:intergenic
AATCATCAAGCACCGATAAC+AGG 0.397688 8.1:-13526848 MS.gene036893:CDS
CCTAAACCCATTGTATTTGA+AGG 0.400664 8.1:+13526806 None:intergenic
ATCCACCTTTACCACTACTA+TGG 0.406819 8.1:+13527426 None:intergenic
GGATGATGGGGAAGCATAAC+AGG 0.408632 8.1:+13526662 None:intergenic
TTCTTCTTCATAGCTCCAAA+TGG 0.430907 8.1:+13527760 None:intergenic
CCTGGTGGTTTAGGAATGTA+TGG 0.438589 8.1:-13526746 MS.gene036893:CDS
TGTCATCAAGTGGAGCCATT+TGG 0.441940 8.1:-13527775 MS.gene036893:CDS
AGATGTCATTGGTGCATTGT+TGG 0.442436 8.1:+13526590 None:intergenic
GCTCATATGGCATCTGCAGT+TGG 0.444181 8.1:-13526689 MS.gene036893:CDS
CTATGCTCTTCTTCTGTCCA+TGG 0.458260 8.1:+13527356 None:intergenic
AGAAGATTCAAAAGAGCAAT+GGG 0.463592 8.1:-13527696 MS.gene036893:CDS
CTCATATGGCATCTGCAGTT+GGG 0.466530 8.1:-13526688 MS.gene036893:CDS
ACAATCCCTTCAAATACAAT+GGG 0.480739 8.1:-13526812 MS.gene036893:CDS
CACAATCCCTTCAAATACAA+TGG 0.482952 8.1:-13526813 MS.gene036893:CDS
TCAGAACAAGAAAGGAGAAA+AGG 0.493051 8.1:-13527383 MS.gene036893:CDS
GCAACAACAGGATGTCCAAC+TGG 0.493168 8.1:+13526719 None:intergenic
TGTTAACACTAGTAATATCA+TGG 0.493710 8.1:+13526888 None:intergenic
GGTTTAGACAAATTTGGAAA+AGG 0.494395 8.1:-13527034 MS.gene036893:CDS
TGAGCAGGAGGAGCAACAAC+AGG 0.495632 8.1:+13526707 None:intergenic
CTAAACCCATTGTATTTGAA+GGG 0.499951 8.1:+13526807 None:intergenic
GTGGATGATGATGAGGATGA+TGG 0.500151 8.1:+13526648 None:intergenic
GTTCAGCCTCATCATCCTCC+TGG 0.503699 8.1:-13526764 MS.gene036893:CDS
TGGATGATGATGAGGATGAT+GGG 0.504027 8.1:+13526649 None:intergenic
TGTACCTCTTGCTTACCCTA+TGG 0.504295 8.1:-13526618 MS.gene036893:CDS
TAAGCAAGAGGTACAACATA+AGG 0.508613 8.1:+13526626 None:intergenic
TGCATTGTTGGAGGTGCCAT+AGG 0.508759 8.1:+13526602 None:intergenic
CATCGTCATCAGAACAAGAA+AGG 0.515208 8.1:-13527391 MS.gene036893:CDS
AGAATGCTATAGCCATGCAT+TGG 0.517213 8.1:-13527727 MS.gene036893:CDS
TGTCATTGGTGCATTGTTGG+AGG 0.521814 8.1:+13526593 None:intergenic
GCGTGACTTGCTACTTGTGT+TGG 0.526225 8.1:+13526968 None:intergenic
AAGAAGATTCAAAAGAGCAA+TGG 0.529523 8.1:-13527697 MS.gene036893:CDS
GAAACAACATTACCAAGTAT+TGG 0.544479 8.1:-13527630 MS.gene036893:CDS
TAACATCATCTACCAATACT+TGG 0.547881 8.1:+13527618 None:intergenic
GAGATTGGAGGAGCATATCA+AGG 0.549491 8.1:-13527012 MS.gene036893:CDS
AAAGGAGAAAAGGAATTCCA+TGG 0.553013 8.1:-13527373 MS.gene036893:CDS
ACTGCAGATGCCATATGAGC+AGG 0.554621 8.1:+13526692 None:intergenic
GGAATGTATGGAGCACCAGT+TGG 0.557234 8.1:-13526734 MS.gene036893:CDS
ACACACCATAGTAGTGGTAA+AGG 0.568656 8.1:-13527431 MS.gene036893:CDS
TGATCTCTTATCTGAACTTG+TGG 0.570341 8.1:+13527505 None:intergenic
CAATGAATAGAGATAGAAGA+AGG 0.573297 8.1:-13526919 MS.gene036893:CDS
AGATGATGTTAGTGCAATTG+AGG 0.574849 8.1:-13527606 MS.gene036893:CDS
CAGCCTCATCATCCTCCTGG+TGG 0.590947 8.1:-13526761 MS.gene036893:CDS
CACCATAGTAGTGGTAAAGG+TGG 0.593230 8.1:-13527428 MS.gene036893:CDS
GGATGATGATGAGGATGATG+GGG 0.600297 8.1:+13526650 None:intergenic
GCAAGAGGTACAACATAAGG+TGG 0.601447 8.1:+13526629 None:intergenic
GATGTTAGTGCAATTGAGGA+AGG 0.604039 8.1:-13527602 MS.gene036893:CDS
ATAACCAACATGTCATCAAG+TGG 0.608531 8.1:-13527785 None:intergenic
CCATACATTCCTAAACCACC+AGG 0.623664 8.1:+13526746 None:intergenic
AATTTGGAAAAGGAGATTGG+AGG 0.625943 8.1:-13527024 MS.gene036893:CDS
AAACCACCAGGAGGATGATG+AGG 0.627717 8.1:+13526758 None:intergenic
GTGGTAAAGGTGGATTGTCA+AGG 0.632578 8.1:-13527418 MS.gene036893:CDS
GCATTGTTGGAGGTGCCATA+GGG 0.632899 8.1:+13526603 None:intergenic
TTTACCACTACTATGGTGTG+TGG 0.634746 8.1:+13527433 None:intergenic
CATGGACAGAAGAAGAGCAT+AGG 0.635255 8.1:-13527355 MS.gene036893:intron
GATATTACTAGTGTTAACAA+TGG 0.637555 8.1:-13526884 MS.gene036893:CDS
GCACCGATAACAGGTCAACA+TGG 0.644220 8.1:-13526839 MS.gene036893:CDS
GCAGATGCCATATGAGCAGG+AGG 0.646062 8.1:+13526695 None:intergenic
GACTCCACACACCATAGTAG+TGG 0.647100 8.1:-13527437 MS.gene036893:CDS
ACATAAGGTGGATGATGATG+AGG 0.659765 8.1:+13526641 None:intergenic
GGTGCCATAGGGTAAGCAAG+AGG 0.704654 8.1:+13526614 None:intergenic
TACATTCCTAAACCACCAGG+AGG 0.734599 8.1:+13526749 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTGTTTCTTTTATTC+AGG - chr8.1:13527302-13527321 MS.gene036893:intron 15.0%
!! ATTGTTGAACAATTATATGA+AGG + chr8.1:13527078-13527097 None:intergenic 20.0%
!! TCTAATTCATTAGCATAATT+TGG + chr8.1:13526808-13526827 None:intergenic 20.0%
!! TTCAAGGTAATTAATTAACA+TGG - chr8.1:13527259-13527278 MS.gene036893:intron 20.0%
!! TTGTTGAACAATTATATGAA+GGG + chr8.1:13527077-13527096 None:intergenic 20.0%
!!! TTATTCAGGTTATTTTTACT+CGG - chr8.1:13527316-13527335 MS.gene036893:intron 20.0%
! AGATGTACTAAATTTCAACA+AGG - chr8.1:13527225-13527244 MS.gene036893:intron 25.0%
! ATGAAATATATTTGTGCACA+CGG + chr8.1:13527200-13527219 None:intergenic 25.0%
! GATATTACTAGTGTTAACAA+TGG - chr8.1:13527487-13527506 MS.gene036893:CDS 25.0%
! TGTTAACACTAGTAATATCA+TGG + chr8.1:13527486-13527505 None:intergenic 25.0%
! TTCAAACAAAGATTCTTCTA+AGG - chr8.1:13526840-13526859 MS.gene036893:CDS 25.0%
!!! AAGAGATCAAGTTGTAATTT+TGG - chr8.1:13526880-13526899 MS.gene036893:CDS 25.0%
AAGAAGATTCAAAAGAGCAA+TGG - chr8.1:13526674-13526693 MS.gene036893:CDS 30.0%
ACAAATTTGGAAAAGGAGAT+TGG - chr8.1:13527344-13527363 MS.gene036893:intron 30.0%
ACAATCCCTTCAAATACAAT+GGG - chr8.1:13527559-13527578 MS.gene036893:CDS 30.0%
AGAAGATTCAAAAGAGCAAT+GGG - chr8.1:13526675-13526694 MS.gene036893:CDS 30.0%
CAAGGATTCATTTCAATTCA+AGG - chr8.1:13527243-13527262 MS.gene036893:intron 30.0%
CAATGAATAGAGATAGAAGA+AGG - chr8.1:13527452-13527471 MS.gene036893:CDS 30.0%
CTAAACCCATTGTATTTGAA+GGG + chr8.1:13527567-13527586 None:intergenic 30.0%
GAAACAACATTACCAAGTAT+TGG - chr8.1:13526741-13526760 MS.gene036893:CDS 30.0%
GGTTTAGACAAATTTGGAAA+AGG - chr8.1:13527337-13527356 MS.gene036893:intron 30.0%
TAACATCATCTACCAATACT+TGG + chr8.1:13526756-13526775 None:intergenic 30.0%
TTACTCGGTTTAGACAAATT+TGG - chr8.1:13527331-13527350 MS.gene036893:intron 30.0%
! ACATGTTCCATACTTTTGTT+GGG + chr8.1:13526721-13526740 None:intergenic 30.0%
! CAAGGAATTTTGTGATATCT+AGG - chr8.1:13527377-13527396 MS.gene036893:CDS 30.0%
!! ACGCACAAAAGTATTTCATT+AGG - chr8.1:13527422-13527441 MS.gene036893:CDS 30.0%
!! CAAGTTGTAATTTTGGAAGT+GGG - chr8.1:13526887-13526906 MS.gene036893:CDS 30.0%
!! TCAAGTTGTAATTTTGGAAG+TGG - chr8.1:13526886-13526905 MS.gene036893:CDS 30.0%
!!! TTCTTTTTCAATCCAATGCA+TGG + chr8.1:13526659-13526678 None:intergenic 30.0%
AAAGGAGAAAAGGAATTCCA+TGG - chr8.1:13526998-13527017 MS.gene036893:CDS 35.0%
AATTTGGAAAAGGAGATTGG+AGG - chr8.1:13527347-13527366 MS.gene036893:intron 35.0%
AGATGATGTTAGTGCAATTG+AGG - chr8.1:13526765-13526784 MS.gene036893:CDS 35.0%
ATATGTCCCCAACAAAAGTA+TGG - chr8.1:13526711-13526730 MS.gene036893:CDS 35.0%
CACAATCCCTTCAAATACAA+TGG - chr8.1:13527558-13527577 MS.gene036893:CDS 35.0%
CCTAAACCCATTGTATTTGA+AGG + chr8.1:13527568-13527587 None:intergenic 35.0%
TCAGAACAAGAAAGGAGAAA+AGG - chr8.1:13526988-13527007 MS.gene036893:CDS 35.0%
TGATCTCTTATCTGAACTTG+TGG + chr8.1:13526869-13526888 None:intergenic 35.0%
TTACCATGTTGACCTGTTAT+CGG + chr8.1:13527538-13527557 None:intergenic 35.0%
TTCTTCTTCATAGCTCCAAA+TGG + chr8.1:13526614-13526633 None:intergenic 35.0%
! CACATGTTCCATACTTTTGT+TGG + chr8.1:13526722-13526741 None:intergenic 35.0%
! CATGTTCCATACTTTTGTTG+GGG + chr8.1:13526720-13526739 None:intergenic 35.0%
! CCTTCAAATACAATGGGTTT+AGG - chr8.1:13527565-13527584 MS.gene036893:CDS 35.0%
! TAAGCAAGAGGTACAACATA+AGG + chr8.1:13527748-13527767 None:intergenic 35.0%
!! AATTTTGGAAGTGGGTTTTC+TGG - chr8.1:13526895-13526914 MS.gene036893:CDS 35.0%
ACACACCATAGTAGTGGTAA+AGG - chr8.1:13526940-13526959 MS.gene036893:CDS 40.0%
AGAATGCTATAGCCATGCAT+TGG - chr8.1:13526644-13526663 MS.gene036893:CDS 40.0%
ATCCACCTTTACCACTACTA+TGG + chr8.1:13526948-13526967 None:intergenic 40.0%
CAGACAAACAGATAGACAGA+CGG + chr8.1:13527164-13527183 None:intergenic 40.0%
CATCGTCATCAGAACAAGAA+AGG - chr8.1:13526980-13526999 MS.gene036893:CDS 40.0%
GATGTTAGTGCAATTGAGGA+AGG - chr8.1:13526769-13526788 MS.gene036893:CDS 40.0%
TTTACCACTACTATGGTGTG+TGG + chr8.1:13526941-13526960 None:intergenic 40.0%
! ACATAAGGTGGATGATGATG+AGG + chr8.1:13527733-13527752 None:intergenic 40.0%
! TGGATGATGATGAGGATGAT+GGG + chr8.1:13527725-13527744 None:intergenic 40.0%
!! AATCATCAAGCACCGATAAC+AGG - chr8.1:13527523-13527542 MS.gene036893:CDS 40.0%
CACCATAGTAGTGGTAAAGG+TGG - chr8.1:13526943-13526962 MS.gene036893:CDS 45.0%
CCATACATTCCTAAACCACC+AGG + chr8.1:13527628-13527647 None:intergenic 45.0%
CCTGGTGGTTTAGGAATGTA+TGG - chr8.1:13527625-13527644 MS.gene036893:CDS 45.0%
CTATGCTCTTCTTCTGTCCA+TGG + chr8.1:13527018-13527037 None:intergenic 45.0%
CTCATATGGCATCTGCAGTT+GGG - chr8.1:13527683-13527702 MS.gene036893:CDS 45.0%
TACATTCCTAAACCACCAGG+AGG + chr8.1:13527625-13527644 None:intergenic 45.0%
TGTACCTCTTGCTTACCCTA+TGG - chr8.1:13527753-13527772 MS.gene036893:CDS 45.0%
TGTCATCAAGTGGAGCCATT+TGG - chr8.1:13526596-13526615 MS.gene036893:CDS 45.0%
! CATGGACAGAAGAAGAGCAT+AGG - chr8.1:13527016-13527035 MS.gene036893:CDS 45.0%
! GAGATTGGAGGAGCATATCA+AGG - chr8.1:13527359-13527378 MS.gene036893:CDS 45.0%
! GCAAGAGGTACAACATAAGG+TGG + chr8.1:13527745-13527764 None:intergenic 45.0%
! GGATGATGATGAGGATGATG+GGG + chr8.1:13527724-13527743 None:intergenic 45.0%
! GTGGATGATGATGAGGATGA+TGG + chr8.1:13527726-13527745 None:intergenic 45.0%
!! GTGGTAAAGGTGGATTGTCA+AGG - chr8.1:13526953-13526972 MS.gene036893:CDS 45.0%
!!! GGGTTTTCTGGTTCTGGATT+TGG - chr8.1:13526907-13526926 MS.gene036893:CDS 45.0%
AAACCACCAGGAGGATGATG+AGG + chr8.1:13527616-13527635 None:intergenic 50.0%
ACTGCAGATGCCATATGAGC+AGG + chr8.1:13527682-13527701 None:intergenic 50.0%
CATCATCCTCCTGGTGGTTT+AGG - chr8.1:13527616-13527635 MS.gene036893:CDS 50.0%
GACTCCACACACCATAGTAG+TGG - chr8.1:13526934-13526953 MS.gene036893:CDS 50.0%
GCAACAACAGGATGTCCAAC+TGG + chr8.1:13527655-13527674 None:intergenic 50.0%
GCTCATATGGCATCTGCAGT+TGG - chr8.1:13527682-13527701 MS.gene036893:CDS 50.0%
TGTTGCTCCTCCTGCTCATA+TGG - chr8.1:13527669-13527688 MS.gene036893:CDS 50.0%
! GCACCGATAACAGGTCAACA+TGG - chr8.1:13527532-13527551 MS.gene036893:CDS 50.0%
! GGAATGTATGGAGCACCAGT+TGG - chr8.1:13527637-13527656 MS.gene036893:CDS 50.0%
!! GCATTGTTGGAGGTGCCATA+GGG + chr8.1:13527771-13527790 None:intergenic 50.0%
!! GCGTGACTTGCTACTTGTGT+TGG + chr8.1:13527406-13527425 None:intergenic 50.0%
!! GGATGATGGGGAAGCATAAC+AGG + chr8.1:13527712-13527731 None:intergenic 50.0%
!! TGCATTGTTGGAGGTGCCAT+AGG + chr8.1:13527772-13527791 None:intergenic 50.0%
!!! GGAAGTGGGTTTTCTGGTTC+TGG - chr8.1:13526901-13526920 MS.gene036893:CDS 50.0%
GCAGATGCCATATGAGCAGG+AGG + chr8.1:13527679-13527698 None:intergenic 55.0%
GTTCAGCCTCATCATCCTCC+TGG - chr8.1:13527607-13527626 MS.gene036893:CDS 55.0%
TGAGCAGGAGGAGCAACAAC+AGG + chr8.1:13527667-13527686 None:intergenic 55.0%
! GGTGCCATAGGGTAAGCAAG+AGG + chr8.1:13527760-13527779 None:intergenic 55.0%
CAGCCTCATCATCCTCCTGG+TGG - chr8.1:13527610-13527629 MS.gene036893:CDS 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 13526595 13527798 13526595 ID=MS.gene036893
chr8.1 mRNA 13526595 13527798 13526595 ID=MS.gene036893.t1;Parent=MS.gene036893
chr8.1 exon 13527356 13527798 13527356 ID=MS.gene036893.t1.exon1;Parent=MS.gene036893.t1
chr8.1 CDS 13527356 13527798 13527356 ID=cds.MS.gene036893.t1;Parent=MS.gene036893.t1
chr8.1 exon 13526595 13527069 13526595 ID=MS.gene036893.t1.exon2;Parent=MS.gene036893.t1
chr8.1 CDS 13526595 13527069 13526595 ID=cds.MS.gene036893.t1;Parent=MS.gene036893.t1
Gene Sequence

>MS.gene036893

ATGTCATCAAGTGGAGCCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCTATAGCCATGCATTGGATTGAAAAAGAAGATTCAAAAGAGCAATGGGAAAAGATTGCTTCATATGTCCCCAACAAAAGTATGGAACATGTGAAACAACATTACCAAGTATTGGTAGATGATGTTAGTGCAATTGAGGAAGGTCATGTATCATTGCCAAATTATGCTAATGAATTAGAAACTATTAATTCTTCAAACAAAGATTCTTCTAAGGCTACCACAAGTTCAGATAAGAGATCAAGTTGTAATTTTGGAAGTGGGTTTTCTGGTTCTGGATTTGGACATGACTCCACACACCATAGTAGTGGTAAAGGTGGATTGTCAAGGTCATCATCGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAAGAAGAGCATAGGTGCTTTCTAATTACATTTACACTTCTTGAATTGAACCCTTCATATAATTGTTCAACAATATCTCGTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTATTAATCTATTTGTTTGTCCGTCTGTCTATCTGTTTGTCTGTCACTTTGTCTTTCCGTGTGCACAAATATATTTCATTAGCTAGATGTACTAAATTTCAACAAGGATTCATTTCAATTCAAGGTAATTAATTAACATGGTTAATTAAGTAACAAGTTTTTTAATTTGTTTCTTTTATTCAGGTTATTTTTACTCGGTTTAGACAAATTTGGAAAAGGAGATTGGAGGAGCATATCAAGGAATTTTGTGATATCTAGGACACCAACACAAGTAGCAAGTCACGCACAAAAGTATTTCATTAGGTTGAATTCAATGAATAGAGATAGAAGAAGGTCTAGTATCCATGATATTACTAGTGTTAACAATGGAGATGTAGCTAGTAATCATCAAGCACCGATAACAGGTCAACATGGTAACACAATCCCTTCAAATACAATGGGTTTAGGACAATCAATGAAGCATAGAGTTCAGCCTCATCATCCTCCTGGTGGTTTAGGAATGTATGGAGCACCAGTTGGACATCCTGTTGTTGCTCCTCCTGCTCATATGGCATCTGCAGTTGGGACACCTGTTATGCTTCCCCATCATCCTCATCATCATCCACCTTATGTTGTACCTCTTGCTTACCCTATGGCACCTCCAACAATGCACCAATGA
Protein sequence

>MS.gene036893.t1

MSSSGAIWSYEEEKAFENAIAMHWIEKEDSKEQWEKIASYVPNKSMEHVKQHYQVLVDDVSAIEEGHVSLPNYANELETINSSNKDSSKATTSSDKRSSCNFGSGFSGSGFGHDSTHHSSGKGGLSRSSSSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVASNHQAPITGQHGNTIPSNTMGLGQSMKHRVQPHHPPGGLGMYGAPVGHPVVAPPAHMASAVGTPVMLPHHPHHHPPYVVPLAYPMAPPTMHQ