Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038745.t1 | XP_013458057.1 | 89.6 | 260 | 2 | 1 | 1 | 235 | 1 | 260 | 2.70E-116 | 428.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038745.t1 | Q9FNN6 | 45.2 | 219 | 70 | 4 | 3 | 196 | 7 | 200 | 5.1e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038745.t1 | A0A072USM0 | 89.6 | 260 | 2 | 1 | 1 | 235 | 1 | 260 | 1.9e-116 | 428.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038745.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43756 | MS.gene038745 | PPI |
| MS.gene44859 | MS.gene038745 | PPI |
| MS.gene04461 | MS.gene038745 | PPI |
| MS.gene05604 | MS.gene038745 | PPI |
| MS.gene88743 | MS.gene038745 | PPI |
| MS.gene04050 | MS.gene038745 | PPI |
| MS.gene038745 | MS.gene04574 | PPI |
| MS.gene009920 | MS.gene038745 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038745.t1 | MTR_4g111975 | 90.759 | 303 | 3 | 1 | 1 | 278 | 1 | 303 | 0.0 | 553 |
| MS.gene038745.t1 | MTR_8g063600 | 39.236 | 288 | 87 | 13 | 8 | 253 | 10 | 251 | 3.97e-47 | 159 |
| MS.gene038745.t1 | MTR_7g067080 | 30.844 | 308 | 138 | 10 | 3 | 267 | 30 | 305 | 6.61e-34 | 125 |
| MS.gene038745.t1 | MTR_3g462790 | 38.756 | 209 | 67 | 6 | 8 | 186 | 43 | 220 | 1.25e-31 | 119 |
| MS.gene038745.t1 | MTR_1g033620 | 54.225 | 142 | 42 | 5 | 146 | 271 | 38 | 172 | 1.35e-31 | 117 |
| MS.gene038745.t1 | MTR_1g111830 | 36.000 | 200 | 73 | 4 | 8 | 182 | 24 | 193 | 2.19e-31 | 117 |
| MS.gene038745.t1 | MTR_5g069710 | 37.745 | 204 | 65 | 5 | 8 | 181 | 29 | 200 | 3.28e-31 | 118 |
| MS.gene038745.t1 | MTR_8g063870 | 34.507 | 284 | 141 | 12 | 8 | 271 | 8 | 266 | 1.22e-30 | 115 |
| MS.gene038745.t1 | MTR_5g081860 | 34.300 | 207 | 77 | 6 | 8 | 187 | 27 | 201 | 1.93e-27 | 107 |
| MS.gene038745.t1 | MTR_1g033600 | 44.604 | 139 | 57 | 4 | 8 | 146 | 12 | 130 | 1.04e-26 | 102 |
| MS.gene038745.t1 | MTR_1g022290 | 48.000 | 75 | 35 | 2 | 1 | 75 | 1 | 71 | 2.44e-17 | 75.9 |
| MS.gene038745.t1 | MTR_3g111880 | 48.000 | 75 | 36 | 2 | 3 | 77 | 2 | 73 | 6.86e-17 | 74.3 |
| MS.gene038745.t1 | MTR_6g004250 | 45.946 | 74 | 37 | 1 | 2 | 75 | 4 | 74 | 1.12e-14 | 68.2 |
| MS.gene038745.t1 | MTR_6g092540 | 48.611 | 72 | 12 | 1 | 132 | 178 | 91 | 162 | 1.82e-14 | 72.4 |
| MS.gene038745.t1 | MTR_4g100630 | 44.706 | 85 | 22 | 1 | 127 | 186 | 84 | 168 | 1.56e-13 | 70.1 |
| MS.gene038745.t1 | MTR_3g116720 | 40.000 | 70 | 39 | 1 | 4 | 73 | 12 | 78 | 3.23e-13 | 64.3 |
| MS.gene038745.t1 | MTR_8g101650 | 47.887 | 71 | 11 | 2 | 132 | 177 | 99 | 168 | 7.08e-13 | 67.8 |
| MS.gene038745.t1 | MTR_2g100930 | 40.426 | 94 | 24 | 2 | 109 | 177 | 87 | 173 | 1.24e-11 | 64.7 |
| MS.gene038745.t1 | MTR_3g013440 | 43.421 | 76 | 38 | 3 | 1 | 75 | 4 | 75 | 3.10e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038745.t1 | AT1G49010 | 46.866 | 335 | 99 | 12 | 1 | 277 | 1 | 314 | 1.75e-68 | 215 |
| MS.gene038745.t1 | AT5G08520 | 43.836 | 292 | 91 | 10 | 3 | 258 | 7 | 261 | 2.47e-56 | 183 |
| MS.gene038745.t1 | AT2G38090 | 36.634 | 202 | 85 | 3 | 5 | 181 | 26 | 209 | 6.30e-37 | 133 |
| MS.gene038745.t1 | AT5G01200 | 38.235 | 204 | 81 | 4 | 6 | 181 | 28 | 214 | 1.11e-32 | 121 |
| MS.gene038745.t1 | AT5G58900 | 37.864 | 206 | 78 | 7 | 2 | 181 | 28 | 209 | 4.99e-32 | 120 |
| MS.gene038745.t1 | AT5G23650 | 36.607 | 224 | 89 | 6 | 3 | 199 | 8 | 205 | 3.72e-31 | 119 |
| MS.gene038745.t1 | AT5G05790 | 30.741 | 270 | 116 | 9 | 1 | 229 | 24 | 263 | 2.38e-27 | 107 |
| MS.gene038745.t1 | AT5G05790 | 30.741 | 270 | 116 | 9 | 1 | 229 | 24 | 263 | 2.38e-27 | 107 |
| MS.gene038745.t1 | AT5G04760 | 34.247 | 219 | 82 | 5 | 8 | 201 | 6 | 187 | 2.73e-27 | 105 |
| MS.gene038745.t1 | AT3G11280 | 35.176 | 199 | 68 | 4 | 8 | 181 | 33 | 195 | 3.43e-26 | 103 |
| MS.gene038745.t1 | AT3G11280 | 35.176 | 199 | 68 | 4 | 8 | 181 | 33 | 195 | 3.43e-26 | 103 |
| MS.gene038745.t1 | AT3G10580 | 30.137 | 219 | 79 | 9 | 1 | 194 | 1 | 170 | 5.56e-16 | 76.3 |
| MS.gene038745.t1 | AT3G10580 | 30.137 | 219 | 79 | 9 | 1 | 194 | 1 | 170 | 6.68e-16 | 76.3 |
| MS.gene038745.t1 | AT5G47390 | 41.284 | 109 | 36 | 2 | 112 | 192 | 67 | 175 | 1.14e-14 | 73.6 |
| MS.gene038745.t1 | AT4G39250 | 42.424 | 66 | 35 | 1 | 8 | 73 | 14 | 76 | 8.41e-14 | 66.2 |
| MS.gene038745.t1 | AT1G75250 | 40.845 | 71 | 39 | 1 | 3 | 73 | 7 | 74 | 3.74e-13 | 64.7 |
| MS.gene038745.t1 | AT5G61620 | 30.612 | 196 | 79 | 8 | 112 | 273 | 84 | 256 | 7.17e-13 | 68.2 |
| MS.gene038745.t1 | AT1G75250 | 40.909 | 66 | 36 | 1 | 8 | 73 | 12 | 74 | 1.12e-12 | 63.9 |
| MS.gene038745.t1 | AT2G21650 | 35.897 | 78 | 44 | 2 | 8 | 85 | 14 | 85 | 4.77e-11 | 58.9 |
Find 67 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGATCAAGTTGTAATTT+TGG | 0.168041 | 8.3:-13939903 | MS.gene038745:CDS |
| TATAATTCATTAGCATAATT+TGG | 0.190687 | 8.3:+13939978 | None:intergenic |
| CATCATCCTCCTGGTGGTTT+AGG | 0.251182 | 8.3:-13939178 | MS.gene038745:CDS |
| TTACCATGTTGACCTGTTAT+TGG | 0.282124 | 8.3:+13939259 | None:intergenic |
| TTCAAACAAAGATTCTTCTA+AGG | 0.298166 | 8.3:-13939943 | MS.gene038745:CDS |
| CCTTCAAATACAATGGGTTT+AGG | 0.313838 | 8.3:-13939229 | MS.gene038745:CDS |
| ATCTGTCCCCAACAAAAGTA+TGG | 0.337048 | 8.3:-13940072 | MS.gene038745:CDS |
| TGTTGCTCCTCCTGCTCATA+TGG | 0.385813 | 8.3:-13939125 | MS.gene038745:CDS |
| AATCATCAAGCACCAATAAC+AGG | 0.394644 | 8.3:-13939271 | MS.gene038745:CDS |
| CCTAAACCCATTGTATTTGA+AGG | 0.400664 | 8.3:+13939229 | None:intergenic |
| ATCCACCTTTACCACTACTA+TGG | 0.406819 | 8.3:+13939844 | None:intergenic |
| GGATGATGGGGAAGCATAAC+AGG | 0.408632 | 8.3:+13939085 | None:intergenic |
| TTCTTCTTCATAGCTCCAAA+TGG | 0.430907 | 8.3:+13940172 | None:intergenic |
| CCTGGTGGTTTAGGAATGTA+TGG | 0.438589 | 8.3:-13939169 | MS.gene038745:CDS |
| TGTCATCAAGTGGAGCCATT+TGG | 0.441940 | 8.3:-13940187 | MS.gene038745:CDS |
| GCTCATATGGCATCTGCAGT+TGG | 0.444181 | 8.3:-13939112 | MS.gene038745:CDS |
| AGTTGTCATTGGTGCATTGT+TGG | 0.444498 | 8.3:+13939013 | None:intergenic |
| ATGCACAAAAGTATTTCATA+AGG | 0.449793 | 8.3:-13939372 | MS.gene038745:CDS |
| AGAAGATTCAAAAGAACAAT+GGG | 0.451020 | 8.3:-13940108 | MS.gene038745:CDS |
| CTATGCTCTTCTTCTGTCCA+TGG | 0.458260 | 8.3:+13939774 | None:intergenic |
| CTCATATGGCATCTGCAGTT+GGG | 0.466530 | 8.3:-13939111 | MS.gene038745:CDS |
| GCATGACTTGCTACTTGTGT+TGG | 0.467928 | 8.3:+13939391 | None:intergenic |
| ACAATCCCTTCAAATACAAT+GGG | 0.480739 | 8.3:-13939235 | MS.gene038745:CDS |
| CACAATCCCTTCAAATACAA+TGG | 0.482952 | 8.3:-13939236 | MS.gene038745:CDS |
| TCAGAACAAGAAAGGAGAAA+AGG | 0.492641 | 8.3:-13939801 | MS.gene038745:CDS |
| GCAACAACAGGATGTCCAAC+TGG | 0.493168 | 8.3:+13939142 | None:intergenic |
| TGTTAACACTAGTAATATCA+TGG | 0.493710 | 8.3:+13939311 | None:intergenic |
| TGAGCAGGAGGAGCAACAAC+AGG | 0.495632 | 8.3:+13939130 | None:intergenic |
| CTAAACCCATTGTATTTGAA+GGG | 0.499951 | 8.3:+13939230 | None:intergenic |
| GTGGATGATGATGAGGATGA+TGG | 0.500151 | 8.3:+13939071 | None:intergenic |
| CATCATCATCAGAACAAGAA+AGG | 0.501232 | 8.3:-13939809 | MS.gene038745:CDS |
| GTTCAGCCTCATCATCCTCC+TGG | 0.503699 | 8.3:-13939187 | MS.gene038745:CDS |
| TGGATGATGATGAGGATGAT+GGG | 0.504027 | 8.3:+13939072 | None:intergenic |
| TGTACCTCTTGCTTACCCTA+TGG | 0.504295 | 8.3:-13939041 | MS.gene038745:CDS |
| TAAGCAAGAGGTACAACATA+AGG | 0.508613 | 8.3:+13939049 | None:intergenic |
| TGCATTGTTGGAGGTGCCAT+AGG | 0.508759 | 8.3:+13939025 | None:intergenic |
| TGTCATTGGTGCATTGTTGG+AGG | 0.512443 | 8.3:+13939016 | None:intergenic |
| AGAATGCTATAGCCATGCAT+TGG | 0.517213 | 8.3:-13940139 | MS.gene038745:CDS |
| CACCTTTACCACTACTATGG+TGG | 0.519881 | 8.3:+13939847 | None:intergenic |
| ACCCACCATAGTAGTGGTAA+AGG | 0.542637 | 8.3:-13939849 | MS.gene038745:CDS |
| AAGAAGATTCAAAAGAACAA+TGG | 0.544714 | 8.3:-13940109 | MS.gene038745:CDS |
| AAAGGAGAAAAGGAATTCCA+TGG | 0.553013 | 8.3:-13939791 | MS.gene038745:CDS |
| ACTGCAGATGCCATATGAGC+AGG | 0.554621 | 8.3:+13939115 | None:intergenic |
| GGAATGTATGGAGCACCAGT+TGG | 0.557234 | 8.3:-13939157 | MS.gene038745:CDS |
| CAATGAATAGAGATAGAAGA+AGG | 0.573297 | 8.3:-13939342 | MS.gene038745:CDS |
| AGATGATGTTAGTGCAATTG+AGG | 0.574849 | 8.3:-13940018 | MS.gene038745:CDS |
| ACCTTTACCACTACTATGGT+GGG | 0.587562 | 8.3:+13939848 | None:intergenic |
| GAAACAACATTACCAAGTGT+TGG | 0.588924 | 8.3:-13940042 | MS.gene038745:CDS |
| CAGCCTCATCATCCTCCTGG+TGG | 0.590947 | 8.3:-13939184 | MS.gene038745:CDS |
| CACCATAGTAGTGGTAAAGG+TGG | 0.591929 | 8.3:-13939846 | MS.gene038745:CDS |
| GGATGATGATGAGGATGATG+GGG | 0.600297 | 8.3:+13939073 | None:intergenic |
| GCAAGAGGTACAACATAAGG+TGG | 0.601447 | 8.3:+13939052 | None:intergenic |
| GATGTTAGTGCAATTGAGGA+AGG | 0.604039 | 8.3:-13940014 | MS.gene038745:CDS |
| TAACATCATCTACCAACACT+TGG | 0.606157 | 8.3:+13940030 | None:intergenic |
| AGGGCCAACATGTCATCAAG+TGG | 0.623051 | 8.3:-13940197 | None:intergenic |
| CCATACATTCCTAAACCACC+AGG | 0.623664 | 8.3:+13939169 | None:intergenic |
| GACTCTACCCACCATAGTAG+TGG | 0.624946 | 8.3:-13939855 | MS.gene038745:CDS |
| AAACCACCAGGAGGATGATG+AGG | 0.627717 | 8.3:+13939181 | None:intergenic |
| GTGGTAAAGGTGGATTGTCA+AGG | 0.632578 | 8.3:-13939836 | MS.gene038745:CDS |
| GCATTGTTGGAGGTGCCATA+GGG | 0.632899 | 8.3:+13939026 | None:intergenic |
| CATGGACAGAAGAAGAGCAT+AGG | 0.635255 | 8.3:-13939773 | MS.gene038745:intron |
| GATATTACTAGTGTTAACAA+TGG | 0.637555 | 8.3:-13939307 | MS.gene038745:CDS |
| GCACCAATAACAGGTCAACA+TGG | 0.640651 | 8.3:-13939262 | MS.gene038745:CDS |
| GCAGATGCCATATGAGCAGG+AGG | 0.646062 | 8.3:+13939118 | None:intergenic |
| ACATAAGGTGGATGATGATG+AGG | 0.659765 | 8.3:+13939064 | None:intergenic |
| GGTGCCATAGGGTAAGCAAG+AGG | 0.704654 | 8.3:+13939037 | None:intergenic |
| TACATTCCTAAACCACCAGG+AGG | 0.734599 | 8.3:+13939172 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTCATTAGCATAATT+TGG | + | chr8.3:13939231-13939250 | None:intergenic | 15.0% |
| !!! | TGTTTCTTTTTTTTTTTTTC+AGG | - | chr8.3:13939714-13939733 | MS.gene038745:intron | 15.0% |
| !! | TTCAAGGTAATTAATTAACA+TGG | - | chr8.3:13939665-13939684 | MS.gene038745:intron | 20.0% |
| !!! | AAAAGATCAAGTTGTAATTT+TGG | - | chr8.3:13939303-13939322 | MS.gene038745:CDS | 20.0% |
| !!! | TTTTTCAGGTTATTTTTACT+TGG | - | chr8.3:13939728-13939747 | MS.gene038745:intron | 20.0% |
| ! | AAGAAGATTCAAAAGAACAA+TGG | - | chr8.3:13939097-13939116 | MS.gene038745:CDS | 25.0% |
| ! | AGAAGATTCAAAAGAACAAT+GGG | - | chr8.3:13939098-13939117 | MS.gene038745:CDS | 25.0% |
| ! | AGATGTACAAAATTTCAACA+AGG | - | chr8.3:13939631-13939650 | MS.gene038745:intron | 25.0% |
| ! | ATCGATGAACAATTATATGA+AGG | + | chr8.3:13939495-13939514 | None:intergenic | 25.0% |
| ! | ATGAAATATATTTGTGCACA+CGG | + | chr8.3:13939597-13939616 | None:intergenic | 25.0% |
| ! | GATATTACTAGTGTTAACAA+TGG | - | chr8.3:13939899-13939918 | MS.gene038745:CDS | 25.0% |
| ! | TCGATGAACAATTATATGAA+GGG | + | chr8.3:13939494-13939513 | None:intergenic | 25.0% |
| ! | TGTTAACACTAGTAATATCA+TGG | + | chr8.3:13939898-13939917 | None:intergenic | 25.0% |
| ! | TTACTTGGTTTAGACAAATT+TGG | - | chr8.3:13939743-13939762 | MS.gene038745:intron | 25.0% |
| ! | TTCAAACAAAGATTCTTCTA+AGG | - | chr8.3:13939263-13939282 | MS.gene038745:CDS | 25.0% |
| !!! | ATGCACAAAAGTATTTCATA+AGG | - | chr8.3:13939834-13939853 | MS.gene038745:CDS | 25.0% |
| ACAAATTTGGAAAAGGAGAT+TGG | - | chr8.3:13939756-13939775 | MS.gene038745:intron | 30.0% | |
| ACAATCCCTTCAAATACAAT+GGG | - | chr8.3:13939971-13939990 | MS.gene038745:CDS | 30.0% | |
| CAAGGATTCATTTCAATTCA+AGG | - | chr8.3:13939649-13939668 | MS.gene038745:intron | 30.0% | |
| CAATGAATAGAGATAGAAGA+AGG | - | chr8.3:13939864-13939883 | MS.gene038745:CDS | 30.0% | |
| CTAAACCCATTGTATTTGAA+GGG | + | chr8.3:13939979-13939998 | None:intergenic | 30.0% | |
| GGTTTAGACAAATTTGGAAA+AGG | - | chr8.3:13939749-13939768 | MS.gene038745:intron | 30.0% | |
| ! | ACTTGTTCCATACTTTTGTT+GGG | + | chr8.3:13939144-13939163 | None:intergenic | 30.0% |
| ! | TGATCTTTTATCTGAACTTG+TGG | + | chr8.3:13939292-13939311 | None:intergenic | 30.0% |
| !! | CAAGTTGTAATTTTGGAAGT+GGG | - | chr8.3:13939310-13939329 | MS.gene038745:CDS | 30.0% |
| !! | TCAAGTTGTAATTTTGGAAG+TGG | - | chr8.3:13939309-13939328 | MS.gene038745:CDS | 30.0% |
| !!! | TTCTTTTTCAATCCAATGCA+TGG | + | chr8.3:13939082-13939101 | None:intergenic | 30.0% |
| AAAGGAGAAAAGGAATTCCA+TGG | - | chr8.3:13939415-13939434 | MS.gene038745:intron | 35.0% | |
| AATCATCAAGCACCAATAAC+AGG | - | chr8.3:13939935-13939954 | MS.gene038745:CDS | 35.0% | |
| AGATGATGTTAGTGCAATTG+AGG | - | chr8.3:13939188-13939207 | MS.gene038745:CDS | 35.0% | |
| CAAGGAACTTTGTGATATCT+AGG | - | chr8.3:13939789-13939808 | MS.gene038745:CDS | 35.0% | |
| CACAATCCCTTCAAATACAA+TGG | - | chr8.3:13939970-13939989 | MS.gene038745:CDS | 35.0% | |
| CATCATCATCAGAACAAGAA+AGG | - | chr8.3:13939397-13939416 | MS.gene038745:CDS | 35.0% | |
| CCTAAACCCATTGTATTTGA+AGG | + | chr8.3:13939980-13939999 | None:intergenic | 35.0% | |
| GAAACAACATTACCAAGTGT+TGG | - | chr8.3:13939164-13939183 | MS.gene038745:CDS | 35.0% | |
| TAACATCATCTACCAACACT+TGG | + | chr8.3:13939179-13939198 | None:intergenic | 35.0% | |
| TCAGAACAAGAAAGGAGAAA+AGG | - | chr8.3:13939405-13939424 | MS.gene038745:intron | 35.0% | |
| TTACCATGTTGACCTGTTAT+TGG | + | chr8.3:13939950-13939969 | None:intergenic | 35.0% | |
| TTCTTCTTCATAGCTCCAAA+TGG | + | chr8.3:13939037-13939056 | None:intergenic | 35.0% | |
| ! | CACTTGTTCCATACTTTTGT+TGG | + | chr8.3:13939145-13939164 | None:intergenic | 35.0% |
| ! | CCTTCAAATACAATGGGTTT+AGG | - | chr8.3:13939977-13939996 | MS.gene038745:CDS | 35.0% |
| ! | CTTGTTCCATACTTTTGTTG+GGG | + | chr8.3:13939143-13939162 | None:intergenic | 35.0% |
| ! | GAGATTGGAGAAGTATATCA+AGG | - | chr8.3:13939771-13939790 | MS.gene038745:intron | 35.0% |
| ! | TAAGCAAGAGGTACAACATA+AGG | + | chr8.3:13940160-13940179 | None:intergenic | 35.0% |
| ! | TCTTTTATCTGAACTTGTGG+TGG | + | chr8.3:13939289-13939308 | None:intergenic | 35.0% |
| !! | AATTTTGGAAGTGGGTTTTC+TGG | - | chr8.3:13939318-13939337 | MS.gene038745:CDS | 35.0% |
| ACCTTTACCACTACTATGGT+GGG | + | chr8.3:13939361-13939380 | None:intergenic | 40.0% | |
| AGAATGCTATAGCCATGCAT+TGG | - | chr8.3:13939067-13939086 | MS.gene038745:CDS | 40.0% | |
| ATCCACCTTTACCACTACTA+TGG | + | chr8.3:13939365-13939384 | None:intergenic | 40.0% | |
| ATCTGTCCCCAACAAAAGTA+TGG | - | chr8.3:13939134-13939153 | MS.gene038745:CDS | 40.0% | |
| GATGTTAGTGCAATTGAGGA+AGG | - | chr8.3:13939192-13939211 | MS.gene038745:CDS | 40.0% | |
| ! | ACATAAGGTGGATGATGATG+AGG | + | chr8.3:13940145-13940164 | None:intergenic | 40.0% |
| ! | TGGATGATGATGAGGATGAT+GGG | + | chr8.3:13940137-13940156 | None:intergenic | 40.0% |
| ACCCACCATAGTAGTGGTAA+AGG | - | chr8.3:13939357-13939376 | MS.gene038745:CDS | 45.0% | |
| CACCATAGTAGTGGTAAAGG+TGG | - | chr8.3:13939360-13939379 | MS.gene038745:CDS | 45.0% | |
| CACCTTTACCACTACTATGG+TGG | + | chr8.3:13939362-13939381 | None:intergenic | 45.0% | |
| CCATACATTCCTAAACCACC+AGG | + | chr8.3:13940040-13940059 | None:intergenic | 45.0% | |
| CCTGGTGGTTTAGGAATGTA+TGG | - | chr8.3:13940037-13940056 | MS.gene038745:CDS | 45.0% | |
| CTATGCTCTTCTTCTGTCCA+TGG | + | chr8.3:13939435-13939454 | None:intergenic | 45.0% | |
| CTCATATGGCATCTGCAGTT+GGG | - | chr8.3:13940095-13940114 | MS.gene038745:CDS | 45.0% | |
| GCACCAATAACAGGTCAACA+TGG | - | chr8.3:13939944-13939963 | MS.gene038745:CDS | 45.0% | |
| TACATTCCTAAACCACCAGG+AGG | + | chr8.3:13940037-13940056 | None:intergenic | 45.0% | |
| TGTACCTCTTGCTTACCCTA+TGG | - | chr8.3:13940165-13940184 | MS.gene038745:CDS | 45.0% | |
| TGTCATCAAGTGGAGCCATT+TGG | - | chr8.3:13939019-13939038 | MS.gene038745:CDS | 45.0% | |
| ! | CATGGACAGAAGAAGAGCAT+AGG | - | chr8.3:13939433-13939452 | MS.gene038745:intron | 45.0% |
| ! | GCAAGAGGTACAACATAAGG+TGG | + | chr8.3:13940157-13940176 | None:intergenic | 45.0% |
| ! | GGATGATGATGAGGATGATG+GGG | + | chr8.3:13940136-13940155 | None:intergenic | 45.0% |
| ! | GTGGATGATGATGAGGATGA+TGG | + | chr8.3:13940138-13940157 | None:intergenic | 45.0% |
| !! | GCATGACTTGCTACTTGTGT+TGG | + | chr8.3:13939818-13939837 | None:intergenic | 45.0% |
| !! | GTGGTAAAGGTGGATTGTCA+AGG | - | chr8.3:13939370-13939389 | MS.gene038745:CDS | 45.0% |
| !!! | GGAAGTGGGTTTTCTGGTTT+AGG | - | chr8.3:13939324-13939343 | MS.gene038745:CDS | 45.0% |
| AAACCACCAGGAGGATGATG+AGG | + | chr8.3:13940028-13940047 | None:intergenic | 50.0% | |
| ACTGCAGATGCCATATGAGC+AGG | + | chr8.3:13940094-13940113 | None:intergenic | 50.0% | |
| CATCATCCTCCTGGTGGTTT+AGG | - | chr8.3:13940028-13940047 | MS.gene038745:CDS | 50.0% | |
| GACTCTACCCACCATAGTAG+TGG | - | chr8.3:13939351-13939370 | MS.gene038745:CDS | 50.0% | |
| GCAACAACAGGATGTCCAAC+TGG | + | chr8.3:13940067-13940086 | None:intergenic | 50.0% | |
| GCTCATATGGCATCTGCAGT+TGG | - | chr8.3:13940094-13940113 | MS.gene038745:CDS | 50.0% | |
| TGTTGCTCCTCCTGCTCATA+TGG | - | chr8.3:13940081-13940100 | MS.gene038745:CDS | 50.0% | |
| ! | GGAATGTATGGAGCACCAGT+TGG | - | chr8.3:13940049-13940068 | MS.gene038745:CDS | 50.0% |
| !! | GCATTGTTGGAGGTGCCATA+GGG | + | chr8.3:13940183-13940202 | None:intergenic | 50.0% |
| !! | GGATGATGGGGAAGCATAAC+AGG | + | chr8.3:13940124-13940143 | None:intergenic | 50.0% |
| !! | TGCATTGTTGGAGGTGCCAT+AGG | + | chr8.3:13940184-13940203 | None:intergenic | 50.0% |
| GCAGATGCCATATGAGCAGG+AGG | + | chr8.3:13940091-13940110 | None:intergenic | 55.0% | |
| GTTCAGCCTCATCATCCTCC+TGG | - | chr8.3:13940019-13940038 | MS.gene038745:CDS | 55.0% | |
| TGAGCAGGAGGAGCAACAAC+AGG | + | chr8.3:13940079-13940098 | None:intergenic | 55.0% | |
| ! | GGTGCCATAGGGTAAGCAAG+AGG | + | chr8.3:13940172-13940191 | None:intergenic | 55.0% |
| CAGCCTCATCATCCTCCTGG+TGG | - | chr8.3:13940022-13940041 | MS.gene038745:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13939018 | 13940210 | 13939018 | ID=MS.gene038745 |
| chr8.3 | mRNA | 13939018 | 13940210 | 13939018 | ID=MS.gene038745.t1;Parent=MS.gene038745 |
| chr8.3 | exon | 13939774 | 13940210 | 13939774 | ID=MS.gene038745.t1.exon1;Parent=MS.gene038745.t1 |
| chr8.3 | CDS | 13939774 | 13940210 | 13939774 | ID=cds.MS.gene038745.t1;Parent=MS.gene038745.t1 |
| chr8.3 | exon | 13939018 | 13939417 | 13939018 | ID=MS.gene038745.t1.exon2;Parent=MS.gene038745.t1 |
| chr8.3 | CDS | 13939018 | 13939417 | 13939018 | ID=cds.MS.gene038745.t1;Parent=MS.gene038745.t1 |
| Gene Sequence |
| Protein sequence |
