Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040766.t1 | XP_013467478.1 | 97.7 | 1204 | 21 | 1 | 1 | 1197 | 1 | 1204 | 0.00E+00 | 1820.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040766.t1 | Q56YN8 | 68.4 | 1203 | 372 | 2 | 1 | 1195 | 1 | 1203 | 0.0e+00 | 1308.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040766.t1 | A0A072VIT6 | 97.7 | 1204 | 21 | 1 | 1 | 1197 | 25 | 1228 | 0.0e+00 | 1820.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033508 | MS.gene040766 | PPI |
| MS.gene040766 | MS.gene056169 | PPI |
| MS.gene058789 | MS.gene040766 | PPI |
| MS.gene95250 | MS.gene040766 | PPI |
| MS.gene45748 | MS.gene040766 | PPI |
| MS.gene036083 | MS.gene040766 | PPI |
| MS.gene024068 | MS.gene040766 | PPI |
| MS.gene016667 | MS.gene040766 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040766.t1 | MTR_1g051825 | 98.173 | 1204 | 15 | 1 | 1 | 1197 | 1 | 1204 | 0.0 | 2404 |
| MS.gene040766.t1 | MTR_1g051825 | 98.173 | 1204 | 15 | 1 | 1 | 1197 | 25 | 1228 | 0.0 | 2402 |
| MS.gene040766.t1 | MTR_3g110058 | 65.172 | 580 | 146 | 6 | 122 | 698 | 1 | 527 | 0.0 | 685 |
| MS.gene040766.t1 | MTR_3g110055 | 70.861 | 453 | 120 | 3 | 696 | 1136 | 2 | 454 | 0.0 | 585 |
| MS.gene040766.t1 | MTR_8g037325 | 25.159 | 1260 | 765 | 46 | 1 | 1176 | 1 | 1166 | 1.09e-65 | 243 |
| MS.gene040766.t1 | MTR_5g086975 | 50.570 | 263 | 56 | 4 | 241 | 503 | 58 | 246 | 1.70e-60 | 209 |
| MS.gene040766.t1 | MTR_8g072890 | 23.386 | 1317 | 777 | 46 | 1 | 1188 | 14 | 1227 | 3.16e-44 | 176 |
| MS.gene040766.t1 | MTR_5g087290 | 67.532 | 77 | 25 | 0 | 427 | 503 | 1 | 77 | 3.44e-27 | 107 |
| MS.gene040766.t1 | MTR_0003s0460 | 23.114 | 822 | 487 | 29 | 404 | 1138 | 383 | 1146 | 1.20e-20 | 99.4 |
| MS.gene040766.t1 | MTR_1g069910 | 23.242 | 697 | 394 | 30 | 523 | 1138 | 518 | 1154 | 9.21e-19 | 93.2 |
| MS.gene040766.t1 | MTR_7g091430 | 22.983 | 818 | 500 | 29 | 418 | 1167 | 72 | 827 | 4.95e-17 | 87.4 |
| MS.gene040766.t1 | MTR_7g091420 | 25.131 | 382 | 241 | 10 | 1 | 360 | 9 | 367 | 2.63e-15 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040766.t1 | AT2G27170 | 68.106 | 1204 | 376 | 2 | 1 | 1196 | 1 | 1204 | 0.0 | 1625 |
| MS.gene040766.t1 | AT2G27170 | 68.106 | 1204 | 376 | 2 | 1 | 1196 | 1 | 1204 | 0.0 | 1625 |
| MS.gene040766.t1 | AT2G27170 | 66.413 | 1051 | 346 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1390 |
| MS.gene040766.t1 | AT2G27170 | 66.413 | 1051 | 346 | 1 | 1 | 1044 | 1 | 1051 | 0.0 | 1390 |
| MS.gene040766.t1 | AT3G47460 | 24.860 | 1247 | 782 | 41 | 1 | 1176 | 1 | 1163 | 8.27e-65 | 241 |
| MS.gene040766.t1 | AT3G47460 | 24.800 | 1250 | 782 | 40 | 1 | 1176 | 1 | 1166 | 9.17e-65 | 241 |
| MS.gene040766.t1 | AT5G62410 | 24.941 | 1263 | 764 | 42 | 1 | 1176 | 1 | 1166 | 3.16e-63 | 236 |
| MS.gene040766.t1 | AT5G48600 | 22.745 | 1275 | 795 | 44 | 1 | 1167 | 24 | 1216 | 1.27e-33 | 141 |
| MS.gene040766.t1 | AT5G48600 | 22.871 | 1268 | 805 | 46 | 1 | 1167 | 24 | 1219 | 1.18e-32 | 138 |
| MS.gene040766.t1 | AT3G54670 | 26.111 | 180 | 102 | 5 | 966 | 1138 | 1001 | 1156 | 5.73e-11 | 67.8 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCAACAAGCTTCTCTTTA+AGG | 0.124157 | 1.2:-36050898 | None:intergenic |
| TCTTTAAGGTCTTTGATTTC+AGG | 0.126868 | 1.2:-36050884 | None:intergenic |
| TTGAACTTCTTTGCTAAATA+TGG | 0.172364 | 1.2:-36042158 | None:intergenic |
| CCTTGTTGCACAACATAATA+TGG | 0.190231 | 1.2:-36041679 | None:intergenic |
| TGCAAAACTCAGAACATTTC+TGG | 0.193624 | 1.2:+36046933 | MS.gene040766:CDS |
| AATATTTATTGTTAGAATAA+TGG | 0.223614 | 1.2:+36044411 | MS.gene040766:intron |
| AATCTCGTCAAATAGATAAA+AGG | 0.228063 | 1.2:-36054897 | None:intergenic |
| CAAATTATTCTCCAAATCTT+TGG | 0.239758 | 1.2:-36043611 | None:intergenic |
| GAAATTCAAAGACACCTTCT+TGG | 0.270306 | 1.2:-36050621 | None:intergenic |
| GCAAGTGCTTTAGAAAATAA+TGG | 0.273444 | 1.2:-36050599 | None:intergenic |
| TCTACTCTCCCCTCTGGATT+TGG | 0.277473 | 1.2:-36054383 | None:intergenic |
| TTGGATTTACTGAAGGAAAT+AGG | 0.309154 | 1.2:+36041845 | MS.gene040766:CDS |
| ACCTCCCGATAGCTGTTTCA+TGG | 0.309647 | 1.2:-36054816 | None:intergenic |
| CAGTTCAGCAACTCAATAAT+TGG | 0.313860 | 1.2:-36046966 | None:intergenic |
| TGAACTAGATTATCATATAA+AGG | 0.320612 | 1.2:-36043950 | None:intergenic |
| CAGGACGATTGGTTTGAAAA+AGG | 0.325017 | 1.2:+36041442 | MS.gene040766:CDS |
| GAATCAGATTGAACAGCTTA+AGG | 0.325972 | 1.2:+36050772 | MS.gene040766:CDS |
| CTAATCTAACCACTAATCTT+AGG | 0.329155 | 1.2:+36051048 | MS.gene040766:CDS |
| CCACATTAAGGAGGAGGAAT+TGG | 0.330392 | 1.2:+36049641 | MS.gene040766:CDS |
| AACAGTTATCTGCAAGAATC+TGG | 0.344787 | 1.2:+36049377 | MS.gene040766:CDS |
| ACTGTCAGCATTCTGCTTAA+TGG | 0.349206 | 1.2:-36049616 | None:intergenic |
| CTTTAAGGTCTTTGATTTCA+GGG | 0.351655 | 1.2:-36050883 | None:intergenic |
| AAACACCTTAATCAACAAAA+AGG | 0.353161 | 1.2:+36047297 | MS.gene040766:CDS |
| CAGAGTCTTTCATCAAGGTT+AGG | 0.353698 | 1.2:-36041817 | None:intergenic |
| CAGACACAAAATGCTGAATA+AGG | 0.357538 | 1.2:+36055757 | MS.gene040766:CDS |
| TGCTGACAGTATCCACATTA+AGG | 0.368632 | 1.2:+36049629 | MS.gene040766:CDS |
| AAGGGAAGATCTCTGGAAAT+AGG | 0.370840 | 1.2:+36043749 | MS.gene040766:CDS |
| TTCATTCTCTTTGCTCCATA+AGG | 0.371923 | 1.2:-36046457 | None:intergenic |
| AAGTTCCTCCCTCTTGGAAT+TGG | 0.373248 | 1.2:-36051135 | None:intergenic |
| ACAAGAGAAATCCAAAGATT+TGG | 0.376912 | 1.2:+36043600 | MS.gene040766:CDS |
| ATCATCATCATAGATCCTTA+TGG | 0.382267 | 1.2:+36046442 | MS.gene040766:intron |
| AAAGTTGCCGACAAGATATA+TGG | 0.389830 | 1.2:+36055658 | MS.gene040766:CDS |
| TAAAGCAAATATTACTACTT+TGG | 0.391831 | 1.2:+36046243 | MS.gene040766:CDS |
| AGTCTTGATCATGCGATTCC+TGG | 0.395423 | 1.2:+36046531 | MS.gene040766:CDS |
| AACCTCATTATACTTCTTTG+CGG | 0.396057 | 1.2:-36043569 | None:intergenic |
| TGCTCTAGAGTTCATTAATC+AGG | 0.399310 | 1.2:+36055732 | MS.gene040766:CDS |
| AAGGATGAATACTTTCTAGA+TGG | 0.407606 | 1.2:+36041461 | MS.gene040766:CDS |
| ATCTGATGATGATGAGTCTA+TGG | 0.416008 | 1.2:+36051103 | MS.gene040766:CDS |
| TTCTAAAGCACTTGCCAAGA+AGG | 0.422752 | 1.2:+36050607 | MS.gene040766:CDS |
| AGTAGAAAGAGACAGCCTTC+AGG | 0.428009 | 1.2:+36046309 | MS.gene040766:CDS |
| ATCATTAAGTTCCTCCCTCT+TGG | 0.432035 | 1.2:-36051141 | None:intergenic |
| CATAGACATGATACGGCGCC+TGG | 0.437832 | 1.2:+36055582 | MS.gene040766:intron |
| GCAGTTGGTGCTAATGGATC+TGG | 0.438920 | 1.2:+36039013 | MS.gene040766:intron |
| AGTATTCTCTGAACTTGTAC+AGG | 0.442344 | 1.2:+36052848 | MS.gene040766:CDS |
| AAAGTATACCAAGAAAATAA+AGG | 0.442810 | 1.2:+36051525 | MS.gene040766:CDS |
| GACTTACAAGGGAAGATCTC+TGG | 0.444139 | 1.2:+36043742 | MS.gene040766:CDS |
| TTGAAAATAATGCAGGATAC+AGG | 0.445527 | 1.2:+36041905 | MS.gene040766:CDS |
| GGAGTATAATAGAAGACATC+AGG | 0.449480 | 1.2:+36051441 | MS.gene040766:CDS |
| TTGAAGTTACAGCAGGAAAC+AGG | 0.452589 | 1.2:+36047012 | MS.gene040766:CDS |
| AAATTCAATTTCTTTAAAAG+AGG | 0.455404 | 1.2:-36047396 | None:intergenic |
| TCGGCAACTTTCACTAGCTC+TGG | 0.455767 | 1.2:-36055646 | None:intergenic |
| AGGTGGTACTAGAGTTTATG+AGG | 0.456658 | 1.2:+36041865 | MS.gene040766:CDS |
| ATGAATTTACTAGAAAGTGC+TGG | 0.459206 | 1.2:+36041640 | MS.gene040766:CDS |
| GGTAGCTCGTACCAATGGTT+TGG | 0.459742 | 1.2:+36049413 | MS.gene040766:CDS |
| TAAAGAATTAGAGCAATTGC+TGG | 0.461497 | 1.2:+36051471 | MS.gene040766:CDS |
| TCAAAAGCATCTGATGTCAA+TGG | 0.463495 | 1.2:-36051556 | None:intergenic |
| TTTCAACATGTTCATTAAGC+AGG | 0.467351 | 1.2:+36037440 | None:intergenic |
| TGAAGCACGGAAAGCAGAGC+TGG | 0.467971 | 1.2:+36051022 | MS.gene040766:CDS |
| AATCAGATTGAACAGCTTAA+GGG | 0.472543 | 1.2:+36050773 | MS.gene040766:CDS |
| ATCTCGTCAAATAGATAAAA+GGG | 0.475350 | 1.2:-36054896 | None:intergenic |
| ATCAAGACGAGGATGGTCCT+CGG | 0.477677 | 1.2:+36054357 | MS.gene040766:CDS |
| GTATGGCAAAGATAAGTGTA+AGG | 0.477924 | 1.2:-36054856 | None:intergenic |
| GCTAAATATGGCATATTCCA+AGG | 0.478359 | 1.2:-36042146 | None:intergenic |
| GGGAGAGTAGAAAAGTACAT+TGG | 0.478684 | 1.2:+36054395 | MS.gene040766:CDS |
| TGACGAGATTGATGCAGCAT+TGG | 0.487759 | 1.2:+36054910 | MS.gene040766:CDS |
| AGATGAAATTAATAAATTGA+AGG | 0.489199 | 1.2:+36051338 | MS.gene040766:CDS |
| GGAGCATTTACTCTGTTAAG+TGG | 0.489316 | 1.2:-36047339 | None:intergenic |
| CAAGTTCAGAGAATACTTCT+CGG | 0.493867 | 1.2:-36052842 | None:intergenic |
| GATGAAAGACTCTGAGCGAT+TGG | 0.496038 | 1.2:+36041826 | MS.gene040766:CDS |
| GTGCACTTACGCAGGACGAT+TGG | 0.503688 | 1.2:+36041431 | MS.gene040766:CDS |
| AGTCCTAGAGTTAACTGTGT+TGG | 0.504256 | 1.2:+36037933 | MS.gene040766:CDS |
| TCAATAGAGCGCACTTTCAA+AGG | 0.504820 | 1.2:+36052804 | MS.gene040766:CDS |
| TGACAAGCAGAGAAAATCCT+TGG | 0.504851 | 1.2:+36042129 | MS.gene040766:CDS |
| TTTCAACAGCTTATTTCATG+TGG | 0.504980 | 1.2:+36047239 | MS.gene040766:intron |
| CCCTCTGGATTTGGTTCCCG+AGG | 0.506286 | 1.2:-36054374 | None:intergenic |
| CAGAACATTTCTGGAGTTCA+CGG | 0.506346 | 1.2:+36046942 | MS.gene040766:CDS |
| GAATCTGGATGTGGCTTCAA+AGG | 0.507465 | 1.2:+36049392 | MS.gene040766:CDS |
| CAAAAGCATCTGATGTCAAT+GGG | 0.507767 | 1.2:-36051555 | None:intergenic |
| TAGGAGAAGAAAACAAGAGC+TGG | 0.507827 | 1.2:+36051067 | MS.gene040766:CDS |
| CGTCTAAATACTGTACAACT+TGG | 0.508951 | 1.2:-36042051 | None:intergenic |
| CTTGATGTCAAAGACTTACA+AGG | 0.509155 | 1.2:+36043730 | MS.gene040766:CDS |
| GTAAAGCTGCTCGTGATAAG+TGG | 0.513738 | 1.2:+36044494 | MS.gene040766:CDS |
| ACCGCAGTTGAAGTTACAGC+AGG | 0.517048 | 1.2:+36047005 | MS.gene040766:CDS |
| TGCCATACAGAGATGTGATC+CGG | 0.517388 | 1.2:+36054871 | MS.gene040766:CDS |
| CCATATTATGTTGTGCAACA+AGG | 0.523009 | 1.2:+36041679 | MS.gene040766:CDS |
| AGAGTCTTTCATCAAGGTTA+GGG | 0.524684 | 1.2:-36041816 | None:intergenic |
| TCGTGATAAGTGGCTTCAAA+AGG | 0.524706 | 1.2:+36044504 | MS.gene040766:CDS |
| GAAGAGGGTTGAATTCAGTT+CGG | 0.524749 | 1.2:+36046904 | MS.gene040766:CDS |
| TTCTCTCTACAGGAAGGGGC+TGG | 0.525303 | 1.2:+36039354 | MS.gene040766:intron |
| AGCATCAACCTTCTGCTGCT+CGG | 0.526825 | 1.2:-36050507 | None:intergenic |
| TCTGGTTATGATGAAGAAGA+AGG | 0.527345 | 1.2:+36052884 | MS.gene040766:CDS |
| ACCAAGAAAATAAAGGAACT+TGG | 0.531605 | 1.2:+36051532 | MS.gene040766:CDS |
| TTGGACATGACAGGTTCAAA+CGG | 0.532727 | 1.2:+36052168 | MS.gene040766:intron |
| CCAATTCCTCCTCCTTAATG+TGG | 0.532876 | 1.2:-36049641 | None:intergenic |
| TTACCAACACAGTTAACTCT+AGG | 0.532980 | 1.2:-36037936 | None:intergenic |
| GGAACTAGACGAGGAGAAAG+AGG | 0.534006 | 1.2:+36042084 | MS.gene040766:CDS |
| CCTCAGTACAGAACTGCTGT+TGG | 0.534499 | 1.2:+36054935 | MS.gene040766:CDS |
| TGCCGGATCACATCTCTGTA+TGG | 0.535228 | 1.2:-36054873 | None:intergenic |
| AAGCTAACCTGACTGAATGC+TGG | 0.536188 | 1.2:-36047435 | None:intergenic |
| GGAAGAGGCTGCAGAACAGT+TGG | 0.536294 | 1.2:+36043874 | MS.gene040766:intron |
| TGACTTTCATAGACATGATA+CGG | 0.538047 | 1.2:+36055575 | MS.gene040766:intron |
| TGAAAGTTTGAAAATAATGC+AGG | 0.538235 | 1.2:+36041898 | MS.gene040766:CDS |
| GTATTTAGACGAGAGGTTGA+AGG | 0.538710 | 1.2:+36042063 | MS.gene040766:CDS |
| TTGGCTGCAGTCTATGGAGG+AGG | 0.540488 | 1.2:+36051420 | MS.gene040766:intron |
| ACAGGAAGGGGCTGGACACT+CGG | 0.547884 | 1.2:+36039362 | MS.gene040766:intron |
| GCACTTTCAAAGGTGTTGCT+AGG | 0.548129 | 1.2:+36052814 | MS.gene040766:CDS |
| CAGTCCATGAAACAGCTATC+GGG | 0.548386 | 1.2:+36054812 | MS.gene040766:CDS |
| AGACAAGCTGAACTTGATGC+AGG | 0.548754 | 1.2:+36052320 | MS.gene040766:CDS |
| ATTGAGAGCAGAAGTTGAGA+AGG | 0.549014 | 1.2:+36046500 | MS.gene040766:CDS |
| AAAACCTACGCAGTGAGGAT+AGG | 0.550494 | 1.2:+36039218 | MS.gene040766:CDS |
| CAGAGATAGAAGAGCTTAAG+CGG | 0.550591 | 1.2:+36050549 | MS.gene040766:CDS |
| TCGCTCAGAGTCTTTCATCA+AGG | 0.551421 | 1.2:-36041822 | None:intergenic |
| TGAATTTACTAGAAAGTGCT+GGG | 0.556204 | 1.2:+36041641 | MS.gene040766:CDS |
| TTATGTTGTGCAACAAGGAA+AGG | 0.558455 | 1.2:+36041684 | MS.gene040766:CDS |
| TGAGCGATTGGATTTACTGA+AGG | 0.559996 | 1.2:+36041838 | MS.gene040766:CDS |
| TCAAGACGAGGATGGTCCTC+GGG | 0.561921 | 1.2:+36054358 | MS.gene040766:CDS |
| TCAAATAGATAAAAGGGTGC+CGG | 0.563152 | 1.2:-36054890 | None:intergenic |
| CTACACTCCAGCATTCAGTC+AGG | 0.566976 | 1.2:+36047428 | MS.gene040766:CDS |
| TAATTGCTATGTCACGTGAA+AGG | 0.568481 | 1.2:+36046272 | MS.gene040766:CDS |
| GAGTGTTTGCTATGTCTGCC+AGG | 0.570912 | 1.2:-36055600 | None:intergenic |
| CTCTGGAAATAGGCGTGCCA+AGG | 0.572223 | 1.2:+36043759 | MS.gene040766:CDS |
| AGTCACTCCATATATCTTGT+CGG | 0.574755 | 1.2:-36055665 | None:intergenic |
| CAGTATCCACATTAAGGAGG+AGG | 0.575421 | 1.2:+36049635 | MS.gene040766:CDS |
| TCAAAGGTAGCTCGTACCAA+TGG | 0.575939 | 1.2:+36049408 | MS.gene040766:CDS |
| TAATTTGAAAGATATAACTA+AGG | 0.577008 | 1.2:+36043627 | MS.gene040766:CDS |
| TTGGACTGCATAACACTGGA+AGG | 0.580092 | 1.2:+36049432 | MS.gene040766:CDS |
| ATCACTTAACACAAAACGAA+TGG | 0.580151 | 1.2:-36039188 | None:intergenic |
| TCTGTGATCATAAAATCCTC+CGG | 0.586231 | 1.2:-36049568 | None:intergenic |
| ACAGTCCATGAAACAGCTAT+CGG | 0.587300 | 1.2:+36054811 | MS.gene040766:CDS |
| TGTTATGCAGTCCAAACCAT+TGG | 0.589083 | 1.2:-36049424 | None:intergenic |
| GAATAAAATACAAGGCTCGA+TGG | 0.590027 | 1.2:+36043907 | MS.gene040766:CDS |
| TTGCAAGACTGATCGCATTG+AGG | 0.590062 | 1.2:+36050919 | MS.gene040766:CDS |
| TCTTGTTACCGAGCAGCAGA+AGG | 0.596244 | 1.2:+36050499 | MS.gene040766:CDS |
| CGGAGGATAGGTTGACAAAG+AGG | 0.598561 | 1.2:+36041406 | MS.gene040766:intron |
| ATCCGCAAAGAAGTATAATG+AGG | 0.599544 | 1.2:+36043567 | MS.gene040766:CDS |
| ATGTGCAGGATGTTAGAAGA+GGG | 0.599871 | 1.2:+36046889 | MS.gene040766:intron |
| TTGTACAGTATTTAGACGAG+AGG | 0.601877 | 1.2:+36042056 | MS.gene040766:CDS |
| TATCTGCAAGAATCTGGATG+TGG | 0.602042 | 1.2:+36049383 | MS.gene040766:CDS |
| AGCTGATGGAAGAAATTCAA+CGG | 0.603393 | 1.2:+36046176 | MS.gene040766:CDS |
| CATGCCTATCCTCACTGCGT+AGG | 0.605441 | 1.2:-36039222 | None:intergenic |
| AGAGATAGAAGAGCTTAAGC+GGG | 0.605946 | 1.2:+36050550 | MS.gene040766:CDS |
| TGAACTTGATGCAGGAGATG+AGG | 0.607188 | 1.2:+36052328 | MS.gene040766:CDS |
| TCCTGCTGTAACTTCAACTG+CGG | 0.607414 | 1.2:-36047006 | None:intergenic |
| TGCTCAACAAAAGCTTGCAG+AGG | 0.607778 | 1.2:+36042183 | MS.gene040766:CDS |
| AGTATACTTTATCAAAAGCA+AGG | 0.608236 | 1.2:+36044451 | MS.gene040766:CDS |
| AAAGAATTAGAGCAATTGCT+GGG | 0.609019 | 1.2:+36051472 | MS.gene040766:CDS |
| GATGATGATCAAGACGAGGA+TGG | 0.611923 | 1.2:+36054350 | MS.gene040766:CDS |
| ACTTAATGATGCAAAAGTGT+TGG | 0.612617 | 1.2:+36051154 | MS.gene040766:CDS |
| GTATTCTCTGAACTTGTACA+GGG | 0.613150 | 1.2:+36052849 | MS.gene040766:CDS |
| TATTTGGCTGCAGTCTATGG+AGG | 0.615570 | 1.2:+36051417 | MS.gene040766:intron |
| GATAGAACAAGCTCGGAACA+AGG | 0.616516 | 1.2:+36043534 | MS.gene040766:intron |
| TATGGCAAAGATAAGTGTAA+GGG | 0.620771 | 1.2:-36054855 | None:intergenic |
| TAATATCAAGTCTAGATCAA+CGG | 0.620777 | 1.2:+36052772 | MS.gene040766:CDS |
| ATTCTCTGAACTTGTACAGG+GGG | 0.623659 | 1.2:+36052851 | MS.gene040766:CDS |
| TAATTCAGACAATCGTATCC+CGG | 0.625351 | 1.2:+36039416 | MS.gene040766:CDS |
| TGGTTTGGACTGCATAACAC+TGG | 0.626774 | 1.2:+36049428 | MS.gene040766:CDS |
| ATACTTGAGAATAAAATACA+AGG | 0.629528 | 1.2:+36043899 | MS.gene040766:CDS |
| CATTGATCATTTAACACCAG+AGG | 0.629638 | 1.2:+36050835 | MS.gene040766:CDS |
| GTACTAGAGTTTATGAGGAG+AGG | 0.632212 | 1.2:+36041870 | MS.gene040766:CDS |
| ATCAAGTCTAGATCAACGGA+AGG | 0.632478 | 1.2:+36052776 | MS.gene040766:CDS |
| AATGTGCAGGATGTTAGAAG+AGG | 0.642397 | 1.2:+36046888 | MS.gene040766:intron |
| CTCTGTGGATAAGTGACGCG+AGG | 0.643850 | 1.2:-36047360 | None:intergenic |
| CAACTTTCACTAGCTCTGGA+CGG | 0.648302 | 1.2:-36055642 | None:intergenic |
| AAGAGGAAGTGCACTTACGC+AGG | 0.648679 | 1.2:+36041423 | MS.gene040766:CDS |
| CTTTAAAAGAGGTATGACAT+CGG | 0.649454 | 1.2:-36047385 | None:intergenic |
| GAGAAGAAAACAAGAGCTGG+AGG | 0.650142 | 1.2:+36051070 | MS.gene040766:CDS |
| TGCTGATGCCAATTCCAAGA+GGG | 0.651145 | 1.2:+36051127 | MS.gene040766:CDS |
| CGATGATGATGATCAAGACG+AGG | 0.651573 | 1.2:+36054346 | MS.gene040766:CDS |
| GTACATTGGAGTGAAAGTGA+AGG | 0.655358 | 1.2:+36054409 | MS.gene040766:CDS |
| CTTTCAAAACCTACGCAGTG+AGG | 0.659816 | 1.2:+36039213 | MS.gene040766:CDS |
| TCCTCGGGAACCAAATCCAG+AGG | 0.664489 | 1.2:+36054373 | MS.gene040766:CDS |
| TTGATGTCAAAGACTTACAA+GGG | 0.664824 | 1.2:+36043731 | MS.gene040766:CDS |
| CCTCGGGAACCAAATCCAGA+GGG | 0.665132 | 1.2:+36054374 | MS.gene040766:CDS |
| TATTCTCTGAACTTGTACAG+GGG | 0.676095 | 1.2:+36052850 | MS.gene040766:CDS |
| TGATGCCAATTCCAAGAGGG+AGG | 0.677675 | 1.2:+36051130 | MS.gene040766:CDS |
| GAGGTTGAAGGAACTAGACG+AGG | 0.680578 | 1.2:+36042075 | MS.gene040766:CDS |
| TCCATGAAACAGCTATCGGG+AGG | 0.684031 | 1.2:+36054815 | MS.gene040766:CDS |
| TTTCGGATATAACATTAACA+CGG | 0.684048 | 1.2:-36055705 | None:intergenic |
| TCGAGAGCAAATTGCCACAG+AGG | 0.686171 | 1.2:+36037905 | MS.gene040766:CDS |
| GATTTACTGAAGGAAATAGG+TGG | 0.687534 | 1.2:+36041848 | MS.gene040766:CDS |
| TCATCATAACCAGATGACCA+TGG | 0.692755 | 1.2:-36052875 | None:intergenic |
| GCTTTCATCAAACATAACAC+AGG | 0.700247 | 1.2:+36044549 | MS.gene040766:CDS |
| TGACAGTATCCACATTAAGG+AGG | 0.700442 | 1.2:+36049632 | MS.gene040766:CDS |
| GACATGACAGGTTCAAACGG+AGG | 0.700593 | 1.2:+36052171 | MS.gene040766:intron |
| TTCTCTGAACTTGTACAGGG+GGG | 0.709062 | 1.2:+36052852 | MS.gene040766:CDS |
| TTGCTGATGCCAATTCCAAG+AGG | 0.709781 | 1.2:+36051126 | MS.gene040766:CDS |
| CGGCTTAATGATGAAATGCG+TGG | 0.719466 | 1.2:+36046196 | MS.gene040766:CDS |
| CCAACAGCAGTTCTGTACTG+AGG | 0.722486 | 1.2:-36054935 | None:intergenic |
| GGTATGACATCGGAACTCTG+TGG | 0.736154 | 1.2:-36047375 | None:intergenic |
| CTCGGGAACCAAATCCAGAG+GGG | 0.743912 | 1.2:+36054375 | MS.gene040766:CDS |
| TCTAGGACTGAAATCCTCTG+TGG | 0.746177 | 1.2:-36037919 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 36037447 | 36055777 | 36037447 | ID=MS.gene040766 |
| chr1.2 | mRNA | 36037447 | 36055777 | 36037447 | ID=MS.gene040766.t1;Parent=MS.gene040766 |
| chr1.2 | exon | 36037447 | 36037461 | 36037447 | ID=MS.gene040766.t1.exon1;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36037447 | 36037461 | 36037447 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36037879 | 36037954 | 36037879 | ID=MS.gene040766.t1.exon2;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36037879 | 36037954 | 36037879 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36039017 | 36039055 | 36039017 | ID=MS.gene040766.t1.exon3;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36039017 | 36039055 | 36039017 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36039188 | 36039255 | 36039188 | ID=MS.gene040766.t1.exon4;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36039188 | 36039255 | 36039188 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36039366 | 36039437 | 36039366 | ID=MS.gene040766.t1.exon5;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36039366 | 36039437 | 36039366 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36041416 | 36041495 | 36041416 | ID=MS.gene040766.t1.exon6;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36041416 | 36041495 | 36041416 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36041627 | 36041705 | 36041627 | ID=MS.gene040766.t1.exon7;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36041627 | 36041705 | 36041627 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36041809 | 36041926 | 36041809 | ID=MS.gene040766.t1.exon8;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36041809 | 36041926 | 36041809 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36042029 | 36042204 | 36042029 | ID=MS.gene040766.t1.exon9;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36042029 | 36042204 | 36042029 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36043535 | 36043780 | 36043535 | ID=MS.gene040766.t1.exon10;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36043535 | 36043780 | 36043535 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36043875 | 36043996 | 36043875 | ID=MS.gene040766.t1.exon11;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36043875 | 36043996 | 36043875 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36044426 | 36044570 | 36044426 | ID=MS.gene040766.t1.exon12;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36044426 | 36044570 | 36044426 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36046169 | 36046341 | 36046169 | ID=MS.gene040766.t1.exon13;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36046169 | 36046341 | 36046169 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36046455 | 36046554 | 36046455 | ID=MS.gene040766.t1.exon14;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36046455 | 36046554 | 36046455 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36046897 | 36047033 | 36046897 | ID=MS.gene040766.t1.exon15;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36046897 | 36047033 | 36046897 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36047248 | 36047449 | 36047248 | ID=MS.gene040766.t1.exon16;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36047248 | 36047449 | 36047248 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36049366 | 36049453 | 36049366 | ID=MS.gene040766.t1.exon17;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36049366 | 36049453 | 36049366 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36049538 | 36049668 | 36049538 | ID=MS.gene040766.t1.exon18;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36049538 | 36049668 | 36049538 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36050479 | 36050628 | 36050479 | ID=MS.gene040766.t1.exon19;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36050479 | 36050628 | 36050479 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36050749 | 36050940 | 36050749 | ID=MS.gene040766.t1.exon20;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36050749 | 36050940 | 36050749 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36051020 | 36051203 | 36051020 | ID=MS.gene040766.t1.exon21;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36051020 | 36051203 | 36051020 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36051289 | 36051359 | 36051289 | ID=MS.gene040766.t1.exon22;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36051289 | 36051359 | 36051289 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36051430 | 36051581 | 36051430 | ID=MS.gene040766.t1.exon23;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36051430 | 36051581 | 36051430 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36052181 | 36052349 | 36052181 | ID=MS.gene040766.t1.exon24;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36052181 | 36052349 | 36052181 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36052759 | 36052905 | 36052759 | ID=MS.gene040766.t1.exon25;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36052759 | 36052905 | 36052759 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36054335 | 36054430 | 36054335 | ID=MS.gene040766.t1.exon26;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36054335 | 36054430 | 36054335 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36054785 | 36054959 | 36054785 | ID=MS.gene040766.t1.exon27;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36054785 | 36054959 | 36054785 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| chr1.2 | exon | 36055587 | 36055777 | 36055587 | ID=MS.gene040766.t1.exon28;Parent=MS.gene040766.t1 |
| chr1.2 | CDS | 36055587 | 36055777 | 36055587 | ID=cds.MS.gene040766.t1;Parent=MS.gene040766.t1 |
| Gene Sequence |
| Protein sequence |
