Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04129.t1 | XP_003594786.1 | 94.4 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 2.20E-133 | 485 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04129.t1 | Q9H2J4 | 35.6 | 239 | 143 | 4 | 16 | 250 | 8 | 239 | 1.7e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04129.t1 | G7IMU2 | 94.4 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 1.6e-133 | 485.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064894 | MS.gene04129 | PPI |
| MS.gene04129 | MS.gene063165 | PPI |
| MS.gene04129 | MS.gene014281 | PPI |
| MS.gene04129 | MS.gene68222 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04129.t1 | MTR_2g034610 | 94.400 | 250 | 14 | 0 | 1 | 250 | 1 | 250 | 2.15e-167 | 462 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04129.t1 | AT5G14240 | 68.675 | 249 | 75 | 2 | 1 | 246 | 1 | 249 | 3.87e-121 | 345 |
Find 74 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAGGCTCCATCTGATGTT+TGG | 0.202155 | 3.2:+52181085 | MS.gene04129:CDS |
| GGATCAGTGACTCCCATTTC+AGG | 0.234742 | 3.2:+52181039 | MS.gene04129:CDS |
| ATTGATCCATGATTTATCTT+TGG | 0.253951 | 3.2:-52180251 | None:intergenic |
| TTCAAGTTCATCATGGGTTT+TGG | 0.261525 | 3.2:-52180275 | None:intergenic |
| TTGATCCATGATTTATCTTT+GGG | 0.285616 | 3.2:-52180250 | None:intergenic |
| AATGCAATGCATTGAAGAAT+TGG | 0.297708 | 3.2:+52181241 | MS.gene04129:CDS |
| TATGTTGGTATGACTAGGTT+TGG | 0.325174 | 3.2:+52181383 | MS.gene04129:CDS |
| TACAACAATGGAGCTGTTAA+AGG | 0.339500 | 3.2:+52181356 | MS.gene04129:CDS |
| GCAGGCTCCATCTGATGTTT+GGG | 0.354810 | 3.2:+52181086 | MS.gene04129:CDS |
| GGTTTGAAAGCGGATGGTTT+AGG | 0.379123 | 3.2:-52180190 | None:intergenic |
| AGGAGGAAGATTGCCGAGTT+TGG | 0.379133 | 3.2:-52180170 | None:intergenic |
| TTCATATACAAAGATTTAGA+AGG | 0.380474 | 3.2:+52180118 | MS.gene04129:CDS |
| TTTATCTTTGGGAATGGAAT+CGG | 0.387026 | 3.2:-52180239 | None:intergenic |
| ATGTTGGTATGACTAGGTTT+GGG | 0.398364 | 3.2:+52181384 | MS.gene04129:CDS |
| GAAGAGGTTAGCTGAGATAC+AGG | 0.399888 | 3.2:+52180993 | MS.gene04129:CDS |
| TTGTAATCTTCCTACTTTGT+TGG | 0.414641 | 3.2:+52181331 | MS.gene04129:CDS |
| CATCATCAAGATCGTCTTCA+AGG | 0.426588 | 3.2:-52180300 | None:intergenic |
| CCATGATTTATCTTTGGGAA+TGG | 0.427168 | 3.2:-52180245 | None:intergenic |
| CAAGGTCTTCAAGTTCATCA+TGG | 0.429450 | 3.2:-52180282 | None:intergenic |
| TCAAGACAAGCCGTCGTTGA+TGG | 0.433078 | 3.2:+52182055 | MS.gene04129:CDS |
| AAGATTACAATCCGGGTAGT+TGG | 0.446274 | 3.2:-52181318 | None:intergenic |
| TACGAAATCAGATCCTGAAA+TGG | 0.446543 | 3.2:-52181052 | None:intergenic |
| TTGATTCCTCGTCTCTGCTC+TGG | 0.446620 | 3.2:-52182036 | None:intergenic |
| TTATCTTTGGGAATGGAATC+GGG | 0.447257 | 3.2:-52180238 | None:intergenic |
| TGTAACATTAGGTGTTGCCT+TGG | 0.459416 | 3.2:+52181979 | MS.gene04129:intron |
| TTGTCATTCTTTACAAAGAC+GGG | 0.464153 | 3.2:+52181112 | MS.gene04129:CDS |
| AGATTACAATCCGGGTAGTT+GGG | 0.464995 | 3.2:-52181317 | None:intergenic |
| AGTCGTCATCACGCTCTTCA+TGG | 0.469623 | 3.2:-52182114 | None:intergenic |
| AGAAGGTTCCACAACTCAAT+GGG | 0.472668 | 3.2:+52180135 | MS.gene04129:CDS |
| TAGAAGGTTCCACAACTCAA+TGG | 0.475267 | 3.2:+52180134 | MS.gene04129:CDS |
| GGATCAGTGGCGGGAGAGAA+AGG | 0.477445 | 3.2:-52180217 | None:intergenic |
| ATGTAGAGTACCTGTATTGT+TGG | 0.482108 | 3.2:-52180333 | None:intergenic |
| ATGGAATCGGGATCAGTGGC+GGG | 0.487205 | 3.2:-52180226 | None:intergenic |
| ATCGCTTCCTCCAACAATAC+AGG | 0.489974 | 3.2:+52180323 | MS.gene04129:CDS |
| GCTGTTAAAGGAAATTATGT+TGG | 0.493044 | 3.2:+52181368 | MS.gene04129:CDS |
| CCATTCCCAAAGATAAATCA+TGG | 0.502506 | 3.2:+52180245 | MS.gene04129:CDS |
| ACGAAATCAGATCCTGAAAT+GGG | 0.509016 | 3.2:-52181051 | None:intergenic |
| CTCTGGCCATCATTAAGTAC+AGG | 0.512172 | 3.2:-52182019 | None:intergenic |
| AAGGTCTTCAAGTTCATCAT+GGG | 0.513562 | 3.2:-52180281 | None:intergenic |
| GGTGGTGGTTTGAAAGCGGA+TGG | 0.518456 | 3.2:-52180196 | None:intergenic |
| AAAGTAGGAAGATTACAATC+CGG | 0.518629 | 3.2:-52181326 | None:intergenic |
| AAGTAGGAAGATTACAATCC+GGG | 0.522922 | 3.2:-52181325 | None:intergenic |
| TCAGATCCTGTACTTAATGA+TGG | 0.527646 | 3.2:+52182013 | MS.gene04129:CDS |
| CATTAAGTACAGGATCTGAT+TGG | 0.532522 | 3.2:-52182009 | None:intergenic |
| TTAATAGGATTGCTGAATGT+GGG | 0.544779 | 3.2:+52181213 | MS.gene04129:intron |
| TTTAATAGGATTGCTGAATG+TGG | 0.550396 | 3.2:+52181212 | MS.gene04129:intron |
| TTGAAAGCGGATGGTTTAGG+AGG | 0.551741 | 3.2:-52180187 | None:intergenic |
| AATATCGTCCCATTGAGTTG+TGG | 0.558503 | 3.2:-52180143 | None:intergenic |
| TAGAGTACCTGTATTGTTGG+AGG | 0.566588 | 3.2:-52180330 | None:intergenic |
| GTTGTCATTCTTTACAAAGA+CGG | 0.567372 | 3.2:+52181111 | MS.gene04129:CDS |
| TGATTGTATTCCCAACTACC+CGG | 0.568143 | 3.2:+52181307 | MS.gene04129:CDS |
| GAAAGGTGGTGGTTTGAAAG+CGG | 0.572927 | 3.2:-52180200 | None:intergenic |
| GAAATTATGTTGGTATGACT+AGG | 0.574459 | 3.2:+52181378 | MS.gene04129:CDS |
| ACAACCACCCAAACATCAGA+TGG | 0.575121 | 3.2:-52181093 | None:intergenic |
| GGGAATGGAATCGGGATCAG+TGG | 0.577270 | 3.2:-52180230 | None:intergenic |
| GACGATATTCAAACCAAACT+CGG | 0.583924 | 3.2:+52180157 | MS.gene04129:CDS |
| GGGCGAAGATGTACTCCTGA+AGG | 0.592252 | 3.2:+52181404 | MS.gene04129:CDS |
| AATGGAATCGGGATCAGTGG+CGG | 0.593976 | 3.2:-52180227 | None:intergenic |
| AGGATCTGATTTCGTACGAG+AGG | 0.594647 | 3.2:+52181059 | MS.gene04129:CDS |
| GTGGCGGGAGAGAAAGGTGG+TGG | 0.597291 | 3.2:-52180211 | None:intergenic |
| TTGTTGTACACCAACAAAGT+AGG | 0.598040 | 3.2:-52181341 | None:intergenic |
| TTTGCTATGATAGGAAGAAG+AGG | 0.602112 | 3.2:+52180977 | MS.gene04129:intron |
| ACTTTGTTGGTGTACAACAA+TGG | 0.603280 | 3.2:+52181344 | MS.gene04129:CDS |
| GTACAGGATCTGATTGGCAC+AGG | 0.609831 | 3.2:-52182003 | None:intergenic |
| ATCTGATTGGCACAGGACCA+AGG | 0.615196 | 3.2:-52181996 | None:intergenic |
| TCGTTGATGGAGTTCGCAAG+AGG | 0.621924 | 3.2:+52182068 | MS.gene04129:CDS |
| GGCTCCATCTGATGTTTGGG+TGG | 0.631437 | 3.2:+52181089 | MS.gene04129:CDS |
| TTTCGTACGAGAGGTTTCGC+AGG | 0.649897 | 3.2:+52181068 | MS.gene04129:CDS |
| GTAGTTGGGAATACAATCAG+TGG | 0.658535 | 3.2:-52181303 | None:intergenic |
| TGATGGCCAGAGCAGAGACG+AGG | 0.668974 | 3.2:+52182030 | MS.gene04129:CDS |
| TAATAGGATTGCTGAATGTG+GGG | 0.672574 | 3.2:+52181214 | MS.gene04129:intron |
| TCAGTGGCGGGAGAGAAAGG+TGG | 0.683904 | 3.2:-52180214 | None:intergenic |
| GAGGTTAGCTGAGATACAGG+AGG | 0.684485 | 3.2:+52180996 | MS.gene04129:CDS |
| CTTGCGAACTCCATCAACGA+CGG | 0.749951 | 3.2:-52182065 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATACAAGAACTTAAAA+AGG | - | chr3.2:52181880-52181899 | None:intergenic | 15.0% |
| !!! | ATTTTATTTGATTTGATACA+AGG | + | chr3.2:52180547-52180566 | MS.gene04129:intron | 15.0% |
| !! | AATATACTCGGTATAAATTT+AGG | - | chr3.2:52181681-52181700 | None:intergenic | 20.0% |
| !! | ACAAAACAAGCAAATAATTA+AGG | - | chr3.2:52181962-52181981 | None:intergenic | 20.0% |
| !! | CAAAACAAGCAAATAATTAA+GGG | - | chr3.2:52181961-52181980 | None:intergenic | 20.0% |
| !! | CCAATAAAAAACAATATACT+CGG | - | chr3.2:52181693-52181712 | None:intergenic | 20.0% |
| !! | TATTAAACTTAGGAAATACT+AGG | - | chr3.2:52181759-52181778 | None:intergenic | 20.0% |
| !! | TTCATATACAAAGATTTAGA+AGG | + | chr3.2:52180118-52180137 | MS.gene04129:CDS | 20.0% |
| !!! | AAGTTGTGATTTTTTTATGT+GGG | + | chr3.2:52180432-52180451 | MS.gene04129:intron | 20.0% |
| !!! | TAATATTTCCTTTTCAATCA+AGG | - | chr3.2:52181576-52181595 | None:intergenic | 20.0% |
| !!! | TATGTGTTACTATTAAACTT+AGG | - | chr3.2:52181769-52181788 | None:intergenic | 20.0% |
| ! | AATAAGAAGAGTAGATTAGA+TGG | + | chr3.2:52180765-52180784 | MS.gene04129:intron | 25.0% |
| ! | ACAAGAACTTAAAAAGGTAA+AGG | - | chr3.2:52181874-52181893 | None:intergenic | 25.0% |
| ! | ACGATTACATGATAGAATTA+AGG | + | chr3.2:52181655-52181674 | MS.gene04129:intron | 25.0% |
| ! | AGTGTTTATAGTAGAAAAGA+TGG | + | chr3.2:52180687-52180706 | MS.gene04129:intron | 25.0% |
| ! | ATTGATCCATGATTTATCTT+TGG | - | chr3.2:52180254-52180273 | None:intergenic | 25.0% |
| ! | GAAAACGAATTATAATTTCG+AGG | - | chr3.2:52181635-52181654 | None:intergenic | 25.0% |
| ! | TAAGAGAATTAAATACCTTC+AGG | - | chr3.2:52181422-52181441 | None:intergenic | 25.0% |
| ! | TTGATCCATGATTTATCTTT+GGG | - | chr3.2:52180253-52180272 | None:intergenic | 25.0% |
| !! | GTTTCTCTTATAGTTTTTCT+AGG | - | chr3.2:52180823-52180842 | None:intergenic | 25.0% |
| !!! | AATTTCCAATTTTTTTCACG+TGG | + | chr3.2:52180369-52180388 | MS.gene04129:intron | 25.0% |
| !!! | ATTTCCAATTTTTTTCACGT+GGG | + | chr3.2:52180370-52180389 | MS.gene04129:intron | 25.0% |
| !!! | CAAGTTGTGATTTTTTTATG+TGG | + | chr3.2:52180431-52180450 | MS.gene04129:intron | 25.0% |
| !!! | CCGAGTATATTGTTTTTTAT+TGG | + | chr3.2:52181690-52181709 | MS.gene04129:intron | 25.0% |
| !!! | TGAAGGTATTTAATTCTCTT+AGG | + | chr3.2:52181421-52181440 | MS.gene04129:intron | 25.0% |
| !!! | TTTGCTTGTTTTGTAACATT+AGG | + | chr3.2:52181968-52181987 | MS.gene04129:intron | 25.0% |
| AAAGTAGGAAGATTACAATC+CGG | - | chr3.2:52181329-52181348 | None:intergenic | 30.0% | |
| AACTTAGGAAATACTAGGAA+AGG | - | chr3.2:52181754-52181773 | None:intergenic | 30.0% | |
| AAGAAAGAAAACATGAGCAA+CGG | - | chr3.2:52181460-52181479 | None:intergenic | 30.0% | |
| AATGCAATGCATTGAAGAAT+TGG | + | chr3.2:52181241-52181260 | MS.gene04129:CDS | 30.0% | |
| ACTTAGGAAATACTAGGAAA+GGG | - | chr3.2:52181753-52181772 | None:intergenic | 30.0% | |
| AGATTTAGAGATTAACGAGT+TGG | + | chr3.2:52180852-52180871 | MS.gene04129:intron | 30.0% | |
| AGTAGTATCCTTGATTGAAA+AGG | + | chr3.2:52181565-52181584 | MS.gene04129:intron | 30.0% | |
| CAAATTCAAGTGCATTAACT+TGG | - | chr3.2:52180487-52180506 | None:intergenic | 30.0% | |
| CAAGTTAATGCACTTGAATT+TGG | + | chr3.2:52180485-52180504 | MS.gene04129:intron | 30.0% | |
| GAAATTATGTTGGTATGACT+AGG | + | chr3.2:52181378-52181397 | MS.gene04129:CDS | 30.0% | |
| GCACAACTTCAACTAAATAA+GGG | - | chr3.2:52181833-52181852 | None:intergenic | 30.0% | |
| GCTGTTAAAGGAAATTATGT+TGG | + | chr3.2:52181368-52181387 | MS.gene04129:CDS | 30.0% | |
| GTTGTCATTCTTTACAAAGA+CGG | + | chr3.2:52181111-52181130 | MS.gene04129:CDS | 30.0% | |
| GTTTATAGTAGAAAAGATGG+TGG | + | chr3.2:52180690-52180709 | MS.gene04129:intron | 30.0% | |
| TCTCTTGTGTTCTGTTTAAT+AGG | + | chr3.2:52181198-52181217 | MS.gene04129:intron | 30.0% | |
| TTAATAGGATTGCTGAATGT+GGG | + | chr3.2:52181213-52181232 | MS.gene04129:intron | 30.0% | |
| TTGTAATCTTCCTACTTTGT+TGG | + | chr3.2:52181331-52181350 | MS.gene04129:CDS | 30.0% | |
| TTGTCATTCTTTACAAAGAC+GGG | + | chr3.2:52181112-52181131 | MS.gene04129:CDS | 30.0% | |
| TTTAATAGGATTGCTGAATG+TGG | + | chr3.2:52181212-52181231 | MS.gene04129:intron | 30.0% | |
| ! | ATACAGGTACTCTACATTTT+CGG | + | chr3.2:52180339-52180358 | MS.gene04129:intron | 30.0% |
| ! | ATCTTCACAAATTTTGTTGC+AGG | - | chr3.2:52181278-52181297 | None:intergenic | 30.0% |
| ! | ATTGCTTAATTTGATCCACT+TGG | + | chr3.2:52180903-52180922 | MS.gene04129:intron | 30.0% |
| ! | GGTGTTTATAGAATTTTCTC+TGG | + | chr3.2:52181711-52181730 | MS.gene04129:intron | 30.0% |
| ! | TAACGAGTTGGATCAAAATA+TGG | + | chr3.2:52180864-52180883 | MS.gene04129:intron | 30.0% |
| ! | TTTATCTTTGGGAATGGAAT+CGG | - | chr3.2:52180242-52180261 | None:intergenic | 30.0% |
| !! | TTGAGTCATTTTGCTATGAT+AGG | + | chr3.2:52180968-52180987 | MS.gene04129:intron | 30.0% |
| AAACTAGGCTTAGATGGTTT+GGG | + | chr3.2:52180713-52180732 | MS.gene04129:intron | 35.0% | |
| AACAACATTAGAGAGAGTTG+TGG | + | chr3.2:52180663-52180682 | MS.gene04129:intron | 35.0% | |
| AAGAAGAGTAGATTAGATGG+AGG | + | chr3.2:52180768-52180787 | MS.gene04129:intron | 35.0% | |
| AAGTAGGAAGATTACAATCC+GGG | - | chr3.2:52181328-52181347 | None:intergenic | 35.0% | |
| ACAACCCACGTGAAAAAAAT+TGG | - | chr3.2:52180377-52180396 | None:intergenic | 35.0% | |
| ACGAAATCAGATCCTGAAAT+GGG | - | chr3.2:52181054-52181073 | None:intergenic | 35.0% | |
| ACTTTGTTGGTGTACAACAA+TGG | + | chr3.2:52181344-52181363 | MS.gene04129:CDS | 35.0% | |
| ATGTTGGTATGACTAGGTTT+GGG | + | chr3.2:52181384-52181403 | MS.gene04129:CDS | 35.0% | |
| CATTAAGTACAGGATCTGAT+TGG | - | chr3.2:52182012-52182031 | None:intergenic | 35.0% | |
| CCATTCCCAAAGATAAATCA+TGG | + | chr3.2:52180245-52180264 | MS.gene04129:CDS | 35.0% | |
| GACGATATTCAAACCAAACT+CGG | + | chr3.2:52180157-52180176 | MS.gene04129:CDS | 35.0% | |
| GAGTCAATCACTGTTTGTTT+AGG | + | chr3.2:52180523-52180542 | MS.gene04129:intron | 35.0% | |
| GGCACAACTTCAACTAAATA+AGG | - | chr3.2:52181834-52181853 | None:intergenic | 35.0% | |
| TAATAGGATTGCTGAATGTG+GGG | + | chr3.2:52181214-52181233 | MS.gene04129:intron | 35.0% | |
| TACAACAATGGAGCTGTTAA+AGG | + | chr3.2:52181356-52181375 | MS.gene04129:CDS | 35.0% | |
| TACGAAATCAGATCCTGAAA+TGG | - | chr3.2:52181055-52181074 | None:intergenic | 35.0% | |
| TATGTTGGTATGACTAGGTT+TGG | + | chr3.2:52181383-52181402 | MS.gene04129:CDS | 35.0% | |
| TCAGATCCTGTACTTAATGA+TGG | + | chr3.2:52182013-52182032 | MS.gene04129:CDS | 35.0% | |
| TTGTTGTACACCAACAAAGT+AGG | - | chr3.2:52181344-52181363 | None:intergenic | 35.0% | |
| ! | AAGGTCTTCAAGTTCATCAT+GGG | - | chr3.2:52180284-52180303 | None:intergenic | 35.0% |
| ! | AGCATTTGATCTAGGACTAT+AGG | - | chr3.2:52181612-52181631 | None:intergenic | 35.0% |
| ! | ATGTAGAGTACCTGTATTGT+TGG | - | chr3.2:52180336-52180355 | None:intergenic | 35.0% |
| ! | CCATGATTTATCTTTGGGAA+TGG | - | chr3.2:52180248-52180267 | None:intergenic | 35.0% |
| ! | TAAAAAGGTAAAGGTGTGCA+AGG | - | chr3.2:52181865-52181884 | None:intergenic | 35.0% |
| ! | TACAGGTACTCTACATTTTC+GGG | + | chr3.2:52180340-52180359 | MS.gene04129:intron | 35.0% |
| ! | TTATCTTTGGGAATGGAATC+GGG | - | chr3.2:52180241-52180260 | None:intergenic | 35.0% |
| ! | TTTGCTATGATAGGAAGAAG+AGG | + | chr3.2:52180977-52180996 | MS.gene04129:intron | 35.0% |
| !! | TAGAAAAGATGGTGGAAACT+AGG | + | chr3.2:52180698-52180717 | MS.gene04129:intron | 35.0% |
| !! | TTCAAGTTCATCATGGGTTT+TGG | - | chr3.2:52180278-52180297 | None:intergenic | 35.0% |
| !!! | ACAAGGATTTTTTAATGCCC+TGG | + | chr3.2:52180564-52180583 | MS.gene04129:intron | 35.0% |
| !!! | ACGTGGGTTGTTTTTCTTTA+TGG | + | chr3.2:52180386-52180405 | MS.gene04129:intron | 35.0% |
| AAGATTACAATCCGGGTAGT+TGG | - | chr3.2:52181321-52181340 | None:intergenic | 40.0% | |
| AGAAGGTTCCACAACTCAAT+GGG | + | chr3.2:52180135-52180154 | MS.gene04129:CDS | 40.0% | |
| AGAGTAGATTAGATGGAGGA+TGG | + | chr3.2:52180772-52180791 | MS.gene04129:intron | 40.0% | |
| AGATTACAATCCGGGTAGTT+GGG | - | chr3.2:52181320-52181339 | None:intergenic | 40.0% | |
| CATCATCAAGATCGTCTTCA+AGG | - | chr3.2:52180303-52180322 | None:intergenic | 40.0% | |
| GAAACTAGGCTTAGATGGTT+TGG | + | chr3.2:52180712-52180731 | MS.gene04129:intron | 40.0% | |
| GCTTAAAGAACACTGACAAC+AGG | - | chr3.2:52181492-52181511 | None:intergenic | 40.0% | |
| GTAGTTGGGAATACAATCAG+TGG | - | chr3.2:52181306-52181325 | None:intergenic | 40.0% | |
| GTCGTGAGAATAGACGATAT+AGG | + | chr3.2:52180631-52180650 | MS.gene04129:intron | 40.0% | |
| TAGAAGGTTCCACAACTCAA+TGG | + | chr3.2:52180134-52180153 | MS.gene04129:CDS | 40.0% | |
| TAGATTAGATGGAGGATGGT+CGG | + | chr3.2:52180776-52180795 | MS.gene04129:intron | 40.0% | |
| TGATTGTATTCCCAACTACC+CGG | + | chr3.2:52181307-52181326 | MS.gene04129:CDS | 40.0% | |
| TTTGTCTGTGAGATGCTGAT+AGG | - | chr3.2:52181804-52181823 | None:intergenic | 40.0% | |
| ! | AAAGGTGTGCAAGGAATCAA+GGG | - | chr3.2:52181856-52181875 | None:intergenic | 40.0% |
| ! | AATATCGTCCCATTGAGTTG+TGG | - | chr3.2:52180146-52180165 | None:intergenic | 40.0% |
| ! | CAAGGTCTTCAAGTTCATCA+TGG | - | chr3.2:52180285-52180304 | None:intergenic | 40.0% |
| ! | TAAAGGTGTGCAAGGAATCA+AGG | - | chr3.2:52181857-52181876 | None:intergenic | 40.0% |
| ! | TAGAGTACCTGTATTGTTGG+AGG | - | chr3.2:52180333-52180352 | None:intergenic | 40.0% |
| ! | TGTAACATTAGGTGTTGCCT+TGG | + | chr3.2:52181979-52181998 | MS.gene04129:intron | 40.0% |
| !! | TTTCGAGGAGCATTTGATCT+AGG | - | chr3.2:52181620-52181639 | None:intergenic | 40.0% |
| !!! | GCAGCTAAAGTTTTGAGGTT+TGG | + | chr3.2:52181018-52181037 | MS.gene04129:CDS | 40.0% |
| !!! | TCTCTGGCTTTGAAGCTTTT+AGG | + | chr3.2:52181727-52181746 | MS.gene04129:intron | 40.0% |
| AAGGTGTGCAAGGAATCAAG+GGG | - | chr3.2:52181855-52181874 | None:intergenic | 45.0% | |
| ACAACCACCCAAACATCAGA+TGG | - | chr3.2:52181096-52181115 | None:intergenic | 45.0% | |
| AGGATCTGATTTCGTACGAG+AGG | + | chr3.2:52181059-52181078 | MS.gene04129:CDS | 45.0% | |
| ATCGCTTCCTCCAACAATAC+AGG | + | chr3.2:52180323-52180342 | MS.gene04129:CDS | 45.0% | |
| CAGGGATGAGAATGTTGTGT+TGG | + | chr3.2:52180604-52180623 | MS.gene04129:intron | 45.0% | |
| CGGATCACTAGAACTATAGG+AGG | + | chr3.2:52180796-52180815 | MS.gene04129:intron | 45.0% | |
| CTCTGGCCATCATTAAGTAC+AGG | - | chr3.2:52182022-52182041 | None:intergenic | 45.0% | |
| GGTCGGATCACTAGAACTAT+AGG | + | chr3.2:52180793-52180812 | MS.gene04129:intron | 45.0% | |
| GGTTTGAAAGCGGATGGTTT+AGG | - | chr3.2:52180193-52180212 | None:intergenic | 45.0% | |
| GTGCTTTGATCAGCGTATCA+GGG | + | chr3.2:52180586-52180605 | MS.gene04129:intron | 45.0% | |
| TGGTGGAAACTAGGCTTAGA+TGG | + | chr3.2:52180707-52180726 | MS.gene04129:intron | 45.0% | |
| TTGAAAGCGGATGGTTTAGG+AGG | - | chr3.2:52180190-52180209 | None:intergenic | 45.0% | |
| ! | AGGAGGCAGCTAAAGTTTTG+AGG | + | chr3.2:52181013-52181032 | MS.gene04129:CDS | 45.0% |
| ! | ATACGCTGATCAAAGCACCA+GGG | - | chr3.2:52180584-52180603 | None:intergenic | 45.0% |
| ! | GAAAGGTGGTGGTTTGAAAG+CGG | - | chr3.2:52180203-52180222 | None:intergenic | 45.0% |
| ! | GAAGAGGTTAGCTGAGATAC+AGG | + | chr3.2:52180993-52181012 | MS.gene04129:CDS | 45.0% |
| !! | TTGATCCACTTGGTGTCAAC+AGG | + | chr3.2:52180913-52180932 | MS.gene04129:intron | 45.0% |
| AATGGAATCGGGATCAGTGG+CGG | - | chr3.2:52180230-52180249 | None:intergenic | 50.0% | |
| AGGAGGAAGATTGCCGAGTT+TGG | - | chr3.2:52180173-52180192 | None:intergenic | 50.0% | |
| AGTCGTCATCACGCTCTTCA+TGG | - | chr3.2:52182117-52182136 | None:intergenic | 50.0% | |
| ATCTGATTGGCACAGGACCA+AGG | - | chr3.2:52181999-52182018 | None:intergenic | 50.0% | |
| CAACACCTGTTGACACCAAG+TGG | - | chr3.2:52180921-52180940 | None:intergenic | 50.0% | |
| CTTGCGAACTCCATCAACGA+CGG | - | chr3.2:52182068-52182087 | None:intergenic | 50.0% | |
| GCAGGCTCCATCTGATGTTT+GGG | + | chr3.2:52181086-52181105 | MS.gene04129:CDS | 50.0% | |
| GGATCAGTGACTCCCATTTC+AGG | + | chr3.2:52181039-52181058 | MS.gene04129:CDS | 50.0% | |
| GGTGCTTTGATCAGCGTATC+AGG | + | chr3.2:52180585-52180604 | MS.gene04129:intron | 50.0% | |
| GTACAGGATCTGATTGGCAC+AGG | - | chr3.2:52182006-52182025 | None:intergenic | 50.0% | |
| TCAAGACAAGCCGTCGTTGA+TGG | + | chr3.2:52182055-52182074 | MS.gene04129:CDS | 50.0% | |
| TTGATTCCTCGTCTCTGCTC+TGG | - | chr3.2:52182039-52182058 | None:intergenic | 50.0% | |
| TTTCGTACGAGAGGTTTCGC+AGG | + | chr3.2:52181068-52181087 | MS.gene04129:CDS | 50.0% | |
| ! | GAGGTTAGCTGAGATACAGG+AGG | + | chr3.2:52180996-52181015 | MS.gene04129:CDS | 50.0% |
| ! | GATACGCTGATCAAAGCACC+AGG | - | chr3.2:52180585-52180604 | None:intergenic | 50.0% |
| ! | TCGTTGATGGAGTTCGCAAG+AGG | + | chr3.2:52182068-52182087 | MS.gene04129:CDS | 50.0% |
| ACATGAGCAACGGAGCTTGC+AGG | - | chr3.2:52181450-52181469 | None:intergenic | 55.0% | |
| ATGGAATCGGGATCAGTGGC+GGG | - | chr3.2:52180229-52180248 | None:intergenic | 55.0% | |
| CGCAGGCTCCATCTGATGTT+TGG | + | chr3.2:52181085-52181104 | MS.gene04129:CDS | 55.0% | |
| GGCTCCATCTGATGTTTGGG+TGG | + | chr3.2:52181089-52181108 | MS.gene04129:CDS | 55.0% | |
| GGGAATGGAATCGGGATCAG+TGG | - | chr3.2:52180233-52180252 | None:intergenic | 55.0% | |
| GGGCGAAGATGTACTCCTGA+AGG | + | chr3.2:52181404-52181423 | MS.gene04129:CDS | 55.0% | |
| ! | GGTGGTGGTTTGAAAGCGGA+TGG | - | chr3.2:52180199-52180218 | None:intergenic | 55.0% |
| TGATGGCCAGAGCAGAGACG+AGG | + | chr3.2:52182030-52182049 | MS.gene04129:CDS | 60.0% | |
| ! | GGATCAGTGGCGGGAGAGAA+AGG | - | chr3.2:52180220-52180239 | None:intergenic | 60.0% |
| ! | TCAGTGGCGGGAGAGAAAGG+TGG | - | chr3.2:52180217-52180236 | None:intergenic | 60.0% |
| ! | GTGGCGGGAGAGAAAGGTGG+TGG | - | chr3.2:52180214-52180233 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52180103 | 52182150 | 52180103 | ID=MS.gene04129 |
| chr3.2 | mRNA | 52180103 | 52182150 | 52180103 | ID=MS.gene04129.t1;Parent=MS.gene04129 |
| chr3.2 | exon | 52180103 | 52180344 | 52180103 | ID=MS.gene04129.t1.exon1;Parent=MS.gene04129.t1 |
| chr3.2 | CDS | 52180103 | 52180344 | 52180103 | ID=cds.MS.gene04129.t1;Parent=MS.gene04129.t1 |
| chr3.2 | exon | 52180990 | 52181133 | 52180990 | ID=MS.gene04129.t1.exon2;Parent=MS.gene04129.t1 |
| chr3.2 | CDS | 52180990 | 52181133 | 52180990 | ID=cds.MS.gene04129.t1;Parent=MS.gene04129.t1 |
| chr3.2 | exon | 52181220 | 52181425 | 52181220 | ID=MS.gene04129.t1.exon3;Parent=MS.gene04129.t1 |
| chr3.2 | CDS | 52181220 | 52181425 | 52181220 | ID=cds.MS.gene04129.t1;Parent=MS.gene04129.t1 |
| chr3.2 | exon | 52181990 | 52182150 | 52181990 | ID=MS.gene04129.t1.exon4;Parent=MS.gene04129.t1 |
| chr3.2 | CDS | 52181990 | 52182150 | 52181990 | ID=cds.MS.gene04129.t1;Parent=MS.gene04129.t1 |
| Gene Sequence |
| Protein sequence |
