Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041338.t1 | XP_013448036.1 | 95.6 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 6.00E-107 | 397.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041338.t1 | Q9C7A8 | 64.4 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 7.8e-71 | 268.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041338.t1 | I3SFH0 | 95.6 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 4.3e-107 | 397.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041338 | MS.gene85342 | PPI |
| MS.gene041338 | MS.gene071261 | PPI |
| MS.gene041338 | MS.gene070139 | PPI |
| MS.gene045765 | MS.gene041338 | PPI |
| MS.gene066552 | MS.gene041338 | PPI |
| MS.gene041338 | MS.gene025347 | PPI |
| MS.gene78156 | MS.gene041338 | PPI |
| MS.gene041338 | MS.gene066551 | PPI |
| MS.gene041338 | MS.gene062116 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041338.t1 | MTR_7g029455 | 95.610 | 205 | 9 | 0 | 1 | 205 | 1 | 205 | 1.08e-146 | 408 |
| MS.gene041338.t1 | MTR_7g029455 | 92.891 | 211 | 9 | 1 | 1 | 205 | 1 | 211 | 3.92e-144 | 402 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041338.t1 | AT3G12530 | 64.390 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 4.69e-94 | 275 |
| MS.gene041338.t1 | AT3G12530 | 64.390 | 205 | 72 | 1 | 1 | 205 | 1 | 204 | 4.69e-94 | 275 |
| MS.gene041338.t1 | AT3G12530 | 65.054 | 186 | 64 | 1 | 20 | 205 | 1 | 185 | 2.91e-85 | 252 |
| MS.gene041338.t1 | AT3G12530 | 66.667 | 147 | 49 | 0 | 1 | 147 | 1 | 147 | 3.30e-70 | 213 |
Find 53 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAAAGCTCTCCCAATAAA+TGG | 0.205932 | 1.4:+50933173 | None:intergenic |
| AATATTGTTCGCCCATTTAT+TGG | 0.207398 | 1.4:-50933185 | MS.gene041338:CDS |
| TCCGAAACTCTCTCTGGGTC+TGG | 0.302087 | 1.4:+50933116 | None:intergenic |
| ATAATTATGTATAACTTGTT+TGG | 0.321106 | 1.4:-50932606 | MS.gene041338:CDS |
| TGACAATTGCAGGGAGATTT+CGG | 0.324639 | 1.4:-50935667 | MS.gene041338:intron |
| CATCGTGACTAATCTCAAAA+TGG | 0.330451 | 1.4:-50935794 | MS.gene041338:CDS |
| TCTGGGTCTGGGTTCAAGTC+TGG | 0.338635 | 1.4:+50933128 | None:intergenic |
| GTAACAATCTGCGGAGTAAA+TGG | 0.340928 | 1.4:+50935643 | None:intergenic |
| CGTCTATCCGAAACTCTCTC+TGG | 0.345540 | 1.4:+50933110 | None:intergenic |
| GCAAATGCTCCGACATCTCT+TGG | 0.362089 | 1.4:+50934892 | None:intergenic |
| ATATTGTTCGCCCATTTATT+GGG | 0.393276 | 1.4:-50933184 | MS.gene041338:CDS |
| GAAATTTCTACATAATGAAA+TGG | 0.395437 | 1.4:+50934870 | None:intergenic |
| ATGAAAAGAGTGAAAGTTCA+TGG | 0.404231 | 1.4:+50935947 | None:intergenic |
| CTCCCATGTACTTCTCAAAT+AGG | 0.416880 | 1.4:-50932514 | None:intergenic |
| GTATAACTTGTTTGGCAAGA+AGG | 0.438248 | 1.4:-50932598 | MS.gene041338:CDS |
| CCGAAACTCTCTCTGGGTCT+GGG | 0.440746 | 1.4:+50933117 | None:intergenic |
| TTGTTACTCAAGTACCGCTT+TGG | 0.468205 | 1.4:-50935627 | MS.gene041338:CDS |
| GAACTCACCATGTATGCATC+AGG | 0.471100 | 1.4:+50934722 | None:intergenic |
| CCCAGACCCAGAGAGAGTTT+CGG | 0.471200 | 1.4:-50933117 | MS.gene041338:CDS |
| TTTGGTTGGCAATTGCTCTC+AGG | 0.473747 | 1.4:-50935609 | MS.gene041338:CDS |
| TTGAGGACATCAGAGATGTA+AGG | 0.475567 | 1.4:-50934605 | MS.gene041338:CDS |
| GCTCCATTGTCCCTCCTCAA+TGG | 0.483624 | 1.4:-50935573 | MS.gene041338:CDS |
| GTAAAGCTCTCCCAATAAAT+GGG | 0.485912 | 1.4:+50933174 | None:intergenic |
| TAAAGTTGAAACTGACTTGG+AGG | 0.491249 | 1.4:-50934577 | MS.gene041338:CDS |
| CAAATGCTCCGACATCTCTT+GGG | 0.494044 | 1.4:+50934893 | None:intergenic |
| ACATACTCTCGGGGCATTGT+GGG | 0.504716 | 1.4:+50933076 | None:intergenic |
| CAGCATTCCTGATGCATACA+TGG | 0.510816 | 1.4:-50934729 | MS.gene041338:intron |
| AACATACTCTCGGGGCATTG+TGG | 0.523199 | 1.4:+50933075 | None:intergenic |
| TTTCAAAGAGAAGAGATGGC+TGG | 0.523532 | 1.4:-50935979 | None:intergenic |
| TTCAAAGAGAAGAGATGGCT+GGG | 0.527242 | 1.4:-50935978 | None:intergenic |
| TCATAAAGTTGAAACTGACT+TGG | 0.529908 | 1.4:-50934580 | MS.gene041338:CDS |
| GTCTATCCGAAACTCTCTCT+GGG | 0.530720 | 1.4:+50933111 | None:intergenic |
| CTACCTATTTGAGAAGTACA+TGG | 0.534207 | 1.4:+50932511 | None:intergenic |
| ACTGACTTGGAGGCATTCAA+TGG | 0.547053 | 1.4:-50934567 | MS.gene041338:CDS |
| GGGGCATTGTGGGCAACTTG+TGG | 0.548530 | 1.4:+50933086 | None:intergenic |
| TAAGTTGACACAAGTGTTGG+AGG | 0.551466 | 1.4:-50934928 | MS.gene041338:CDS |
| TACTCAAGTACCGCTTTGGT+TGG | 0.563566 | 1.4:-50935623 | MS.gene041338:CDS |
| TGGTCGTACAATAGCTGTGA+AGG | 0.568663 | 1.4:-50934547 | MS.gene041338:intron |
| GAAGGTGAGGTCTCTAATTG+AGG | 0.573692 | 1.4:-50934622 | MS.gene041338:intron |
| CATCCATTGAGGAGGGACAA+TGG | 0.577418 | 1.4:+50935570 | None:intergenic |
| AGATAAGTTGACACAAGTGT+TGG | 0.580530 | 1.4:-50934931 | MS.gene041338:CDS |
| GCGAAACTCCCAAGAGATGT+CGG | 0.605151 | 1.4:-50934901 | MS.gene041338:CDS |
| GCAATTGCTCTCAGGAAGAG+AGG | 0.614416 | 1.4:-50935601 | MS.gene041338:CDS |
| CCTCCTCAATGGATGACTGT+TGG | 0.615572 | 1.4:-50935562 | MS.gene041338:intron |
| CATCGCTGAAGACGAGATTG+TGG | 0.631390 | 1.4:-50935818 | MS.gene041338:CDS |
| TACCTATTTGAGAAGTACAT+GGG | 0.653958 | 1.4:+50932512 | None:intergenic |
| TTACCAACAGTCATCCATTG+AGG | 0.655858 | 1.4:+50935559 | None:intergenic |
| CAACAGTCATCCATTGAGGA+GGG | 0.658288 | 1.4:+50935563 | None:intergenic |
| CCAACAGTCATCCATTGAGG+AGG | 0.658541 | 1.4:+50935562 | None:intergenic |
| CTTACAGATATGAGACAGAG+AGG | 0.661628 | 1.4:+50935769 | None:intergenic |
| ATCAAACAAACATACTCTCG+GGG | 0.668787 | 1.4:+50933067 | None:intergenic |
| GGTACTTGAGTAACAATCTG+CGG | 0.687743 | 1.4:+50935634 | None:intergenic |
| AGAGCAATTGCCAACCAAAG+CGG | 0.692803 | 1.4:+50935613 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATGGTTTATACATAA+AGG | + | chr1.4:50934171-50934190 | None:intergenic | 15.0% |
| !! | ATTAAATATGAGAAAACAAA+AGG | - | chr1.4:50934458-50934477 | MS.gene041338:intron | 15.0% |
| !! | CACTAAAAATAAAAAATAGA+AGG | + | chr1.4:50933723-50933742 | None:intergenic | 15.0% |
| !!! | ATAATTATGTATAACTTGTT+TGG | - | chr1.4:50935873-50935892 | MS.gene041338:intron | 15.0% |
| !!! | ATATTGAATTTTTACATCTT+TGG | + | chr1.4:50935739-50935758 | None:intergenic | 15.0% |
| !!! | ATATTTCTATTATAAAAGAG+AGG | + | chr1.4:50934678-50934697 | None:intergenic | 15.0% |
| !!! | TATTTCTATTATAAAAGAGA+GGG | + | chr1.4:50934677-50934696 | None:intergenic | 15.0% |
| !!! | TGACGTTTTTTTTATATATA+AGG | - | chr1.4:50934016-50934035 | MS.gene041338:intron | 15.0% |
| !!! | TTAGTTGTTTTTTTTTAACA+AGG | - | chr1.4:50934904-50934923 | MS.gene041338:CDS | 15.0% |
| !!! | TTGTATTTTAATTCTGATTT+GGG | - | chr1.4:50933333-50933352 | MS.gene041338:intron | 15.0% |
| !!! | TTTTGTAATCAAATCAAATA+CGG | + | chr1.4:50934113-50934132 | None:intergenic | 15.0% |
| !! | AATAACAACATAGTTGTATA+TGG | + | chr1.4:50932586-50932605 | None:intergenic | 20.0% |
| !! | ACATAATGTTGTGAAAAAAT+AGG | - | chr1.4:50932998-50933017 | MS.gene041338:intron | 20.0% |
| !! | ATTATTTACACTTGAATAGA+AGG | - | chr1.4:50934184-50934203 | MS.gene041338:intron | 20.0% |
| !! | CATAATGTTGTGAAAAAATA+GGG | - | chr1.4:50932999-50933018 | MS.gene041338:intron | 20.0% |
| !! | CATATATATATTCTTCCAAA+TGG | - | chr1.4:50935801-50935820 | MS.gene041338:CDS | 20.0% |
| !! | GAAATTTCTACATAATGAAA+TGG | + | chr1.4:50933612-50933631 | None:intergenic | 20.0% |
| !! | GATTAAAAATTTATCTGCAA+TGG | - | chr1.4:50935266-50935285 | MS.gene041338:intron | 20.0% |
| !! | GGAATAGAACTTAAAAAATA+AGG | + | chr1.4:50935123-50935142 | None:intergenic | 20.0% |
| !! | TTCTATTCAAGTGTAAATAA+TGG | + | chr1.4:50934185-50934204 | None:intergenic | 20.0% |
| !! | TTTCTCATATTTAATTACAG+TGG | + | chr1.4:50934453-50934472 | None:intergenic | 20.0% |
| !! | TTTGTAATCAAATCAAATAC+GGG | + | chr1.4:50934112-50934131 | None:intergenic | 20.0% |
| !!! | ACATTTTACATCATAATTCT+TGG | - | chr1.4:50935234-50935253 | MS.gene041338:intron | 20.0% |
| !!! | CTTGTATTTTAATTCTGATT+TGG | - | chr1.4:50933332-50933351 | MS.gene041338:intron | 20.0% |
| !!! | GAACTTTCTTTAAAATAATC+TGG | + | chr1.4:50934431-50934450 | None:intergenic | 20.0% |
| !!! | TTTTTCAGTTTAAAACTTGT+TGG | - | chr1.4:50933477-50933496 | MS.gene041338:intron | 20.0% |
| !!! | TTTTTTTAATGACAATTGCA+GGG | - | chr1.4:50932803-50932822 | MS.gene041338:intron | 20.0% |
| ! | ATATATTCTTCCAAATGGAA+TGG | - | chr1.4:50935806-50935825 | MS.gene041338:CDS | 25.0% |
| ! | ATATCAAACAAACATACTCT+CGG | + | chr1.4:50935417-50935436 | None:intergenic | 25.0% |
| ! | ATATTGTTAGAAAGATGGTT+AGG | + | chr1.4:50934628-50934647 | None:intergenic | 25.0% |
| ! | ATTCAGAATCTAATCTATTC+TGG | + | chr1.4:50934548-50934567 | None:intergenic | 25.0% |
| ! | ATTGCGATATATGAGAATAA+AGG | - | chr1.4:50933122-50933141 | MS.gene041338:CDS | 25.0% |
| ! | GAGAAATATTGTTAGAAAGA+TGG | + | chr1.4:50934633-50934652 | None:intergenic | 25.0% |
| ! | TAGAAATATCCCTAAAATCA+AGG | - | chr1.4:50934689-50934708 | MS.gene041338:intron | 25.0% |
| ! | TTAGAGATAAAATTGTCTTG+AGG | + | chr1.4:50934777-50934796 | None:intergenic | 25.0% |
| ! | TTTGGATGTAAAAAATGAGT+GGG | + | chr1.4:50935721-50935740 | None:intergenic | 25.0% |
| !! | ATGTCATTTGTATAGACTTT+GGG | - | chr1.4:50935006-50935025 | MS.gene041338:intron | 25.0% |
| !! | GAGATATTTCCTTGATTTTA+GGG | + | chr1.4:50934701-50934720 | None:intergenic | 25.0% |
| !! | GATGAAAGACAAAAATGTTT+TGG | - | chr1.4:50935773-50935792 | MS.gene041338:intron | 25.0% |
| !! | TGAGATATTTCCTTGATTTT+AGG | + | chr1.4:50934702-50934721 | None:intergenic | 25.0% |
| !!! | AATCAGAATGTTTTAGTTGT+TGG | - | chr1.4:50933073-50933092 | MS.gene041338:intron | 25.0% |
| !!! | GCTGGTTCTTTTAAATTTTT+CGG | - | chr1.4:50933405-50933424 | MS.gene041338:intron | 25.0% |
| !!! | GTTTTTTTAATGACAATTGC+AGG | - | chr1.4:50932802-50932821 | MS.gene041338:intron | 25.0% |
| !!! | TATTTTTTTTCCCCACAAAA+CGG | - | chr1.4:50932954-50932973 | MS.gene041338:intron | 25.0% |
| !!! | TCCTTTTTTTTAGAGTGTTT+TGG | - | chr1.4:50935140-50935159 | MS.gene041338:intron | 25.0% |
| !!! | TTTAAATTTTTCGGTCCTTT+CGG | - | chr1.4:50933414-50933433 | MS.gene041338:intron | 25.0% |
| AATATTGTTCGCCCATTTAT+TGG | - | chr1.4:50935294-50935313 | MS.gene041338:intron | 30.0% | |
| AGGAGATAGAGAAATAGATA+AGG | - | chr1.4:50933142-50933161 | MS.gene041338:CDS | 30.0% | |
| AGTTACGTAATTAGGTGATA+AGG | - | chr1.4:50934939-50934958 | MS.gene041338:intron | 30.0% | |
| ATATTGTTCGCCCATTTATT+GGG | - | chr1.4:50935295-50935314 | MS.gene041338:intron | 30.0% | |
| ATGAAAAGAGTGAAAGTTCA+TGG | + | chr1.4:50932535-50932554 | None:intergenic | 30.0% | |
| ATTACTGCAATAAGCATAGT+TGG | - | chr1.4:50933204-50933223 | MS.gene041338:CDS | 30.0% | |
| CTTTGGATGTAAAAAATGAG+TGG | + | chr1.4:50935722-50935741 | None:intergenic | 30.0% | |
| GACCTATCAAATGTAAACTT+TGG | + | chr1.4:50934839-50934858 | None:intergenic | 30.0% | |
| GAGTTAGTAGTTACGTAATT+AGG | - | chr1.4:50934931-50934950 | MS.gene041338:CDS | 30.0% | |
| GGAGATAGAGAAATAGATAA+GGG | - | chr1.4:50933143-50933162 | MS.gene041338:CDS | 30.0% | |
| GTGGGGAAAAAAAATAAGAA+AGG | + | chr1.4:50932950-50932969 | None:intergenic | 30.0% | |
| GTTACGTAATTAGGTGATAA+GGG | - | chr1.4:50934940-50934959 | MS.gene041338:intron | 30.0% | |
| TATCAAACAAACATACTCTC+GGG | + | chr1.4:50935416-50935435 | None:intergenic | 30.0% | |
| TCATAAAGTTGAAACTGACT+TGG | - | chr1.4:50933899-50933918 | MS.gene041338:intron | 30.0% | |
| TCATTTGTCTCTAAACTTAC+TGG | + | chr1.4:50933650-50933669 | None:intergenic | 30.0% | |
| TGAAAAAATAGGGAGAAATG+TGG | - | chr1.4:50933009-50933028 | MS.gene041338:intron | 30.0% | |
| TGCCAAAGTTTACATTTGAT+AGG | - | chr1.4:50934834-50934853 | MS.gene041338:intron | 30.0% | |
| TTTATACTCGATTTCTGCAA+AGG | - | chr1.4:50935675-50935694 | MS.gene041338:intron | 30.0% | |
| ! | AATGCAGAGGATTTTATTCT+TGG | + | chr1.4:50934519-50934538 | None:intergenic | 30.0% |
| ! | AGGTATAGATACATTTTCAC+TGG | - | chr1.4:50935695-50935714 | MS.gene041338:intron | 30.0% |
| ! | ATATCTCAACTGACTCTATT+TGG | - | chr1.4:50934714-50934733 | MS.gene041338:intron | 30.0% |
| ! | ATGCAGAGGATTTTATTCTT+GGG | + | chr1.4:50934518-50934537 | None:intergenic | 30.0% |
| ! | CATGTCATTTGTATAGACTT+TGG | - | chr1.4:50935005-50935024 | MS.gene041338:intron | 30.0% |
| ! | GCCAAAACACTCTAAAAAAA+AGG | + | chr1.4:50935144-50935163 | None:intergenic | 30.0% |
| ! | TATCTCAACTGACTCTATTT+GGG | - | chr1.4:50934715-50934734 | MS.gene041338:intron | 30.0% |
| ! | TTAGCTTATTTCTCTTGTGA+AGG | - | chr1.4:50933839-50933858 | MS.gene041338:intron | 30.0% |
| !! | AACTTGATTTTGGTCTATTC+TGG | - | chr1.4:50934348-50934367 | MS.gene041338:intron | 30.0% |
| !! | CTCTAAAAAAAAGTGTCACT+AGG | - | chr1.4:50934791-50934810 | MS.gene041338:intron | 30.0% |
| !! | CTTTAAAATAATCTGGTAGC+AGG | + | chr1.4:50934424-50934443 | None:intergenic | 30.0% |
| !! | GGTATATTTCTGGAAATTTC+TGG | + | chr1.4:50933799-50933818 | None:intergenic | 30.0% |
| !! | TTGTTTTGCAATGTGTGATT+TGG | - | chr1.4:50933244-50933263 | MS.gene041338:intron | 30.0% |
| !! | TTTAATTCTGATTTGGGCTT+AGG | - | chr1.4:50933339-50933358 | MS.gene041338:intron | 30.0% |
| AAAATCCTGCGGTATATTTC+TGG | + | chr1.4:50933809-50933828 | None:intergenic | 35.0% | |
| AATGTTGTGTTTACGAGGAT+TGG | + | chr1.4:50934256-50934275 | None:intergenic | 35.0% | |
| AATTTACCACCTCTAGTGTA+TGG | + | chr1.4:50933105-50933124 | None:intergenic | 35.0% | |
| AATTTCCAGAAATATACCGC+AGG | - | chr1.4:50933801-50933820 | MS.gene041338:intron | 35.0% | |
| AGACCAAAATCAAGTTTACG+AGG | + | chr1.4:50934344-50934363 | None:intergenic | 35.0% | |
| ATCAAACAAACATACTCTCG+GGG | + | chr1.4:50935415-50935434 | None:intergenic | 35.0% | |
| CACACATTGCAAAACAAAAG+TGG | + | chr1.4:50933241-50933260 | None:intergenic | 35.0% | |
| CATCGTGACTAATCTCAAAA+TGG | - | chr1.4:50932685-50932704 | MS.gene041338:intron | 35.0% | |
| CATGAATCATTTCGTCAACA+GGG | - | chr1.4:50935072-50935091 | MS.gene041338:intron | 35.0% | |
| CCTTCTACATAGAGTTCAAA+AGG | + | chr1.4:50934314-50934333 | None:intergenic | 35.0% | |
| CTAGTCACAAACAGATGTTA+TGG | + | chr1.4:50933530-50933549 | None:intergenic | 35.0% | |
| CTATTATAAAAGAGAGGGCA+GGG | + | chr1.4:50934672-50934691 | None:intergenic | 35.0% | |
| GCTTATGACTATTAATCAGC+TGG | - | chr1.4:50933387-50933406 | MS.gene041338:intron | 35.0% | |
| GGTCAGTTTATGTTGTTAAG+AGG | - | chr1.4:50934855-50934874 | MS.gene041338:CDS | 35.0% | |
| GTAAAGCTCTCCCAATAAAT+GGG | + | chr1.4:50935308-50935327 | None:intergenic | 35.0% | |
| GTGCAAAGGACATAAAAGTT+TGG | - | chr1.4:50934480-50934499 | MS.gene041338:intron | 35.0% | |
| TATTATAAAAGAGAGGGCAG+GGG | + | chr1.4:50934671-50934690 | None:intergenic | 35.0% | |
| TCTATTATAAAAGAGAGGGC+AGG | + | chr1.4:50934673-50934692 | None:intergenic | 35.0% | |
| TCTTATAGGACTCAGTGTTT+AGG | + | chr1.4:50934747-50934766 | None:intergenic | 35.0% | |
| TGCATGAAAACCATTCCATT+TGG | + | chr1.4:50935819-50935838 | None:intergenic | 35.0% | |
| TGTAAAGCTCTCCCAATAAA+TGG | + | chr1.4:50935309-50935328 | None:intergenic | 35.0% | |
| ! | AAACTCGCACAAAAAGTACA+TGG | + | chr1.4:50935484-50935503 | None:intergenic | 35.0% |
| ! | AAAGTCTCGAATCTTTTTGG+CGG | - | chr1.4:50933956-50933975 | MS.gene041338:intron | 35.0% |
| ! | ACTTTCACTCTTTTCATCAG+AGG | - | chr1.4:50932538-50932557 | MS.gene041338:CDS | 35.0% |
| ! | AGATAAGTTGACACAAGTGT+TGG | - | chr1.4:50933548-50933567 | MS.gene041338:intron | 35.0% |
| ! | CAATTGTAAACCGTTTTGTG+GGG | + | chr1.4:50932967-50932986 | None:intergenic | 35.0% |
| ! | CCTTTTGAACTCTATGTAGA+AGG | - | chr1.4:50934311-50934330 | MS.gene041338:intron | 35.0% |
| ! | GCAATTGTAAACCGTTTTGT+GGG | + | chr1.4:50932968-50932987 | None:intergenic | 35.0% |
| ! | GGTAAAGTCTCGAATCTTTT+TGG | - | chr1.4:50933953-50933972 | MS.gene041338:intron | 35.0% |
| ! | TGAGAAAACAAAAGGTGCAA+AGG | - | chr1.4:50934466-50934485 | MS.gene041338:intron | 35.0% |
| ! | TGCAATTGTAAACCGTTTTG+TGG | + | chr1.4:50932969-50932988 | None:intergenic | 35.0% |
| ! | TTATTTCTCTTGTGAAGGTG+AGG | - | chr1.4:50933844-50933863 | MS.gene041338:intron | 35.0% |
| !! | ATTTTGACATGACAAGACAG+TGG | + | chr1.4:50935562-50935581 | None:intergenic | 35.0% |
| !! | ATTTTGGTCTATTCTGGAAG+AGG | - | chr1.4:50934354-50934373 | MS.gene041338:intron | 35.0% |
| !! | GTATAACTTGTTTGGCAAGA+AGG | - | chr1.4:50935881-50935900 | MS.gene041338:intron | 35.0% |
| !! | TAAAGTTGAAACTGACTTGG+AGG | - | chr1.4:50933902-50933921 | MS.gene041338:intron | 35.0% |
| !!! | ATTGGTTTTGCCATCCAAAA+AGG | + | chr1.4:50934238-50934257 | None:intergenic | 35.0% |
| !!! | TAGTTTTATGCTCCATACCA+AGG | - | chr1.4:50934572-50934591 | MS.gene041338:CDS | 35.0% |
| AACACAACATTCATGGACCT+AGG | - | chr1.4:50934265-50934284 | MS.gene041338:intron | 40.0% | |
| ACACTTGAATAGAAGGCAAG+CGG | - | chr1.4:50934191-50934210 | MS.gene041338:intron | 40.0% | |
| ACTCTCCAAACAACACCAAA+AGG | + | chr1.4:50935032-50935051 | None:intergenic | 40.0% | |
| AGCATCAGAAGAAAATCCTG+CGG | + | chr1.4:50933820-50933839 | None:intergenic | 40.0% | |
| ATAGCAATGTCATGTCTCCT+AGG | + | chr1.4:50934285-50934304 | None:intergenic | 40.0% | |
| CCATGAATCATTTCGTCAAC+AGG | - | chr1.4:50935071-50935090 | MS.gene041338:intron | 40.0% | |
| CCATGAATGTTGTGTTTACG+AGG | + | chr1.4:50934261-50934280 | None:intergenic | 40.0% | |
| CCTCGTAAACACAACATTCA+TGG | - | chr1.4:50934258-50934277 | MS.gene041338:intron | 40.0% | |
| CCTGTTGACGAAATGATTCA+TGG | + | chr1.4:50935074-50935093 | None:intergenic | 40.0% | |
| CTTACAGATATGAGACAGAG+AGG | + | chr1.4:50932713-50932732 | None:intergenic | 40.0% | |
| CTTGAGGCTTGCATTCTTAT+AGG | + | chr1.4:50934761-50934780 | None:intergenic | 40.0% | |
| GACGCTGCCTATAAATATCA+GGG | - | chr1.4:50934962-50934981 | MS.gene041338:intron | 40.0% | |
| GGTACTTGAGTAACAATCTG+CGG | + | chr1.4:50932848-50932867 | None:intergenic | 40.0% | |
| GTAACAATCTGCGGAGTAAA+TGG | + | chr1.4:50932839-50932858 | None:intergenic | 40.0% | |
| TCTGATTGTTAGATCGCAGA+AGG | + | chr1.4:50933060-50933079 | None:intergenic | 40.0% | |
| TGACAATTGCAGGGAGATTT+CGG | - | chr1.4:50932812-50932831 | MS.gene041338:intron | 40.0% | |
| TGGGGATCCCTGATATTTAT+AGG | + | chr1.4:50934972-50934991 | None:intergenic | 40.0% | |
| TTACCAACAGTCATCCATTG+AGG | + | chr1.4:50932923-50932942 | None:intergenic | 40.0% | |
| TTGAGGACATCAGAGATGTA+AGG | - | chr1.4:50933874-50933893 | MS.gene041338:intron | 40.0% | |
| ! | CAGCCTCGTAAACTTGATTT+TGG | - | chr1.4:50934338-50934357 | MS.gene041338:intron | 40.0% |
| ! | TCTTTTCATCAGAGGAGGTA+TGG | - | chr1.4:50932546-50932565 | MS.gene041338:CDS | 40.0% |
| ! | TGTATAGACTTTGGGCCTTT+TGG | - | chr1.4:50935014-50935033 | MS.gene041338:intron | 40.0% |
| ! | TTCACTCTTTTCATCAGAGG+AGG | - | chr1.4:50932541-50932560 | MS.gene041338:CDS | 40.0% |
| ! | TTGTTACTCAAGTACCGCTT+TGG | - | chr1.4:50932852-50932871 | MS.gene041338:intron | 40.0% |
| !! | AAATTTTTCGGTCCTTTCGG+TGG | - | chr1.4:50933417-50933436 | MS.gene041338:intron | 40.0% |
| !! | GCTTGTATTTGCTTTTGCAG+AGG | - | chr1.4:50935839-50935858 | MS.gene041338:intron | 40.0% |
| !! | GGAGAAATGTGGTTGATTTG+TGG | - | chr1.4:50933020-50933039 | MS.gene041338:intron | 40.0% |
| !! | TAAGTTGACACAAGTGTTGG+AGG | - | chr1.4:50933551-50933570 | MS.gene041338:intron | 40.0% |
| ACAAGTCCATACACTAGAGG+TGG | - | chr1.4:50933096-50933115 | MS.gene041338:CDS | 45.0% | |
| ACATGATAGATCGCTCTCTG+GGG | + | chr1.4:50934990-50935009 | None:intergenic | 45.0% | |
| AGAGCAATTGCCAACCAAAG+CGG | + | chr1.4:50932869-50932888 | None:intergenic | 45.0% | |
| ATTCTGGATGCAGAATGCAG+AGG | + | chr1.4:50934532-50934551 | None:intergenic | 45.0% | |
| CAAATGCTCCGACATCTCTT+GGG | + | chr1.4:50933589-50933608 | None:intergenic | 45.0% | |
| CAACAGTCATCCATTGAGGA+GGG | + | chr1.4:50932919-50932938 | None:intergenic | 45.0% | |
| CACTTGAATAGAAGGCAAGC+GGG | - | chr1.4:50934192-50934211 | MS.gene041338:intron | 45.0% | |
| CAGCATTCCTGATGCATACA+TGG | - | chr1.4:50933750-50933769 | MS.gene041338:intron | 45.0% | |
| GAACTCACCATGTATGCATC+AGG | + | chr1.4:50933760-50933779 | None:intergenic | 45.0% | |
| GAAGGTGAGGTCTCTAATTG+AGG | - | chr1.4:50933857-50933876 | MS.gene041338:intron | 45.0% | |
| GACATGATAGATCGCTCTCT+GGG | + | chr1.4:50934991-50935010 | None:intergenic | 45.0% | |
| GGACGCTGCCTATAAATATC+AGG | - | chr1.4:50934961-50934980 | MS.gene041338:intron | 45.0% | |
| GGAGAGATTTCTCTCTGGTT+AGG | + | chr1.4:50934607-50934626 | None:intergenic | 45.0% | |
| GGCTGGAAAATACATGCTGT+TGG | - | chr1.4:50935180-50935199 | MS.gene041338:intron | 45.0% | |
| GGTTAGGAGAGATTTCTCTC+TGG | + | chr1.4:50934612-50934631 | None:intergenic | 45.0% | |
| GTACAGTGGTTGTGAATGTC+TGG | - | chr1.4:50933978-50933997 | MS.gene041338:intron | 45.0% | |
| GTCTATCCGAAACTCTCTCT+GGG | + | chr1.4:50935371-50935390 | None:intergenic | 45.0% | |
| TGACATGATAGATCGCTCTC+TGG | + | chr1.4:50934992-50935011 | None:intergenic | 45.0% | |
| TGCCATCCAAAAAGGTCTAG+CGG | + | chr1.4:50934230-50934249 | None:intergenic | 45.0% | |
| TGGACAAGTCCATACACTAG+AGG | - | chr1.4:50933093-50933112 | MS.gene041338:CDS | 45.0% | |
| TGGTCGTACAATAGCTGTGA+AGG | - | chr1.4:50933932-50933951 | MS.gene041338:intron | 45.0% | |
| TTTGGTTGGCAATTGCTCTC+AGG | - | chr1.4:50932870-50932889 | MS.gene041338:intron | 45.0% | |
| ! | AACTGACTCTATTTGGGCCA+AGG | - | chr1.4:50934721-50934740 | MS.gene041338:intron | 45.0% |
| ! | ATTCTGGAAGAGGTGGGTTT+AGG | - | chr1.4:50934364-50934383 | MS.gene041338:intron | 45.0% |
| ! | TACTCAAGTACCGCTTTGGT+TGG | - | chr1.4:50932856-50932875 | MS.gene041338:intron | 45.0% |
| ! | TGGTCTATTCTGGAAGAGGT+GGG | - | chr1.4:50934358-50934377 | MS.gene041338:intron | 45.0% |
| ! | TTGGCGTGTGACGGAAAATT+TGG | - | chr1.4:50935159-50935178 | MS.gene041338:intron | 45.0% |
| ! | TTGGTCTATTCTGGAAGAGG+TGG | - | chr1.4:50934357-50934376 | MS.gene041338:intron | 45.0% |
| !! | ACTGACTTGGAGGCATTCAA+TGG | - | chr1.4:50933912-50933931 | MS.gene041338:intron | 45.0% |
| !! | GAATCTTTTTGGCGGTACAG+TGG | - | chr1.4:50933964-50933983 | MS.gene041338:intron | 45.0% |
| !!! | TAGAGTGTTTTGGCGTGTGA+CGG | - | chr1.4:50935150-50935169 | MS.gene041338:intron | 45.0% |
| !!! | TTGGGCCTTTTGGTGTTGTT+TGG | - | chr1.4:50935024-50935043 | MS.gene041338:intron | 45.0% |
| AGGACTCAGTGTTTAGGCCT+TGG | + | chr1.4:50934741-50934760 | None:intergenic | 50.0% | |
| CATCCATTGAGGAGGGACAA+TGG | + | chr1.4:50932912-50932931 | None:intergenic | 50.0% | |
| CATCGCTGAAGACGAGATTG+TGG | - | chr1.4:50932661-50932680 | MS.gene041338:intron | 50.0% | |
| CCAACAGTCATCCATTGAGG+AGG | + | chr1.4:50932920-50932939 | None:intergenic | 50.0% | |
| CCTCCTCAATGGATGACTGT+TGG | - | chr1.4:50932917-50932936 | MS.gene041338:intron | 50.0% | |
| CGTCTATCCGAAACTCTCTC+TGG | + | chr1.4:50935372-50935391 | None:intergenic | 50.0% | |
| GCAAATGCTCCGACATCTCT+TGG | + | chr1.4:50933590-50933609 | None:intergenic | 50.0% | |
| GCAATTGCTCTCAGGAAGAG+AGG | - | chr1.4:50932878-50932897 | MS.gene041338:intron | 50.0% | |
| GCGAAACTCCCAAGAGATGT+CGG | - | chr1.4:50933578-50933597 | MS.gene041338:intron | 50.0% | |
| TCCACATGTAGACCACCGAA+AGG | + | chr1.4:50933432-50933451 | None:intergenic | 50.0% | |
| TCCTTTCGGTGGTCTACATG+TGG | - | chr1.4:50933428-50933447 | MS.gene041338:intron | 50.0% | |
| ! | CGTGTGACGGAAAATTTGGC+TGG | - | chr1.4:50935163-50935182 | MS.gene041338:intron | 50.0% |
| !! | AACATACTCTCGGGGCATTG+TGG | + | chr1.4:50935407-50935426 | None:intergenic | 50.0% |
| !! | ACATACTCTCGGGGCATTGT+GGG | + | chr1.4:50935406-50935425 | None:intergenic | 50.0% |
| !! | AGGAGCATTGTGCCTTGGTA+TGG | + | chr1.4:50934587-50934606 | None:intergenic | 50.0% |
| !! | TGGTTAGGAGCATTGTGCCT+TGG | + | chr1.4:50934592-50934611 | None:intergenic | 50.0% |
| CCCAGACCCAGAGAGAGTTT+CGG | - | chr1.4:50935362-50935381 | MS.gene041338:intron | 55.0% | |
| CCGAAACTCTCTCTGGGTCT+GGG | + | chr1.4:50935365-50935384 | None:intergenic | 55.0% | |
| GCTCCATTGTCCCTCCTCAA+TGG | - | chr1.4:50932906-50932925 | MS.gene041338:intron | 55.0% | |
| TCCGAAACTCTCTCTGGGTC+TGG | + | chr1.4:50935366-50935385 | None:intergenic | 55.0% | |
| TCTGGGTCTGGGTTCAAGTC+TGG | + | chr1.4:50935354-50935373 | None:intergenic | 55.0% | |
| ! | CGCCGCTAGACCTTTTTGGA+TGG | - | chr1.4:50934225-50934244 | MS.gene041338:intron | 55.0% |
| ! | GTTGCGCCGCTAGACCTTTT+TGG | - | chr1.4:50934221-50934240 | MS.gene041338:intron | 55.0% |
| AGAGGGCAGGGGAGTGAGTA+AGG | + | chr1.4:50934660-50934679 | None:intergenic | 60.0% | |
| !! | GGGGCATTGTGGGCAACTTG+TGG | + | chr1.4:50935396-50935415 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50932515 | 50935986 | 50932515 | ID=MS.gene041338 |
| chr1.4 | mRNA | 50932515 | 50935986 | 50932515 | ID=MS.gene041338.t1;Parent=MS.gene041338 |
| chr1.4 | exon | 50935939 | 50935986 | 50935939 | ID=MS.gene041338.t1.exon1;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50935939 | 50935986 | 50935939 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50935774 | 50935848 | 50935774 | ID=MS.gene041338.t1.exon2;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50935774 | 50935848 | 50935774 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50935563 | 50935677 | 50935563 | ID=MS.gene041338.t1.exon3;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50935563 | 50935677 | 50935563 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50934852 | 50934951 | 50934852 | ID=MS.gene041338.t1.exon4;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50934852 | 50934951 | 50934852 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50934730 | 50934760 | 50934730 | ID=MS.gene041338.t1.exon5;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50934730 | 50934760 | 50934730 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50934548 | 50934640 | 50934548 | ID=MS.gene041338.t1.exon6;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50934548 | 50934640 | 50934548 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50933082 | 50933234 | 50933082 | ID=MS.gene041338.t1.exon7;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50933082 | 50933234 | 50933082 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| chr1.4 | exon | 50932515 | 50932661 | 50932515 | ID=MS.gene041338.t1.exon8;Parent=MS.gene041338.t1 |
| chr1.4 | CDS | 50932515 | 50932661 | 50932515 | ID=cds.MS.gene041338.t1;Parent=MS.gene041338.t1 |
| Gene Sequence |
| Protein sequence |
