AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041605

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041605.t1 MTR_4g120270 89.007 282 17 3 4 281 1 272 5.41e-166 461
MS.gene041605.t1 MTR_2g436100 53.150 254 94 10 18 263 27 263 5.13e-72 223
MS.gene041605.t1 MTR_8g023400 40.201 199 95 6 16 208 21 201 5.37e-36 131
MS.gene041605.t1 MTR_7g117540 45.455 143 64 3 20 161 20 149 4.05e-31 117
MS.gene041605.t1 MTR_3g464780 53.012 83 33 1 82 158 95 177 4.82e-27 106
MS.gene041605.t1 MTR_6g087150 45.385 130 59 4 34 158 42 164 1.21e-25 104
MS.gene041605.t1 MTR_3g110190 40.580 138 68 3 34 164 13 143 2.99e-25 103
MS.gene041605.t1 MTR_2g090950 38.636 176 87 4 20 186 30 193 6.11e-25 100
MS.gene041605.t1 MTR_7g108855 43.182 132 62 3 90 217 67 189 2.03e-24 97.4
MS.gene041605.t1 MTR_8g089880 41.401 157 71 6 89 237 127 270 4.57e-24 98.6
MS.gene041605.t1 MTR_1g082550 46.939 98 46 3 86 178 95 191 1.41e-23 99.0
MS.gene041605.t1 MTR_5g064990 38.415 164 77 7 23 179 62 208 1.45e-23 99.0
MS.gene041605.t1 MTR_7g113800 53.012 83 34 1 85 162 87 169 1.58e-23 98.6
MS.gene041605.t1 MTR_3g100400 56.164 73 30 1 89 159 130 202 2.31e-23 99.0
MS.gene041605.t1 MTR_5g071930 38.411 151 85 3 24 173 7 150 3.03e-23 94.4
MS.gene041605.t1 MTR_4g063070 39.869 153 70 6 21 158 236 381 5.72e-23 97.4
MS.gene041605.t1 MTR_5g066250 37.692 130 74 3 69 195 114 239 6.35e-23 97.8
MS.gene041605.t1 MTR_4g093830 32.278 158 97 3 25 174 58 213 8.57e-23 96.7
MS.gene041605.t1 MTR_3g091620 38.583 127 63 3 80 191 92 218 1.06e-22 96.3
MS.gene041605.t1 MTR_2g090905 47.778 90 39 1 78 159 28 117 1.12e-22 90.9
MS.gene041605.t1 MTR_2g096350 46.591 88 43 1 90 173 108 195 1.23e-22 93.6
MS.gene041605.t1 MTR_5g064980 41.071 112 53 2 87 193 106 209 8.62e-22 94.4
MS.gene041605.t1 MTR_8g073120 44.545 110 51 4 59 164 46 149 8.72e-22 90.9
MS.gene041605.t1 MTR_1g043410 35.526 152 86 4 14 158 22 168 2.78e-21 91.7
MS.gene041605.t1 MTR_3g071300 30.409 171 94 6 1 162 1 155 2.89e-21 88.6
MS.gene041605.t1 MTR_3g099650 35.811 148 77 3 30 172 61 195 5.69e-21 91.7
MS.gene041605.t1 MTR_5g030010 31.746 189 101 6 31 193 58 244 1.28e-20 90.5
MS.gene041605.t1 MTR_2g009310 38.372 172 72 8 89 228 135 304 1.29e-20 90.9
MS.gene041605.t1 MTR_5g064890 32.057 209 118 9 33 225 59 259 1.84e-20 90.1
MS.gene041605.t1 MTR_1g492830 34.483 145 76 4 20 158 2 133 2.08e-20 87.4
MS.gene041605.t1 MTR_8g066780 32.000 150 96 3 31 176 58 205 2.52e-20 89.7
MS.gene041605.t1 MTR_1g070140 46.753 77 38 1 87 160 101 177 2.55e-20 89.4
MS.gene041605.t1 MTR_3g094000 43.820 89 46 1 86 170 88 176 3.59e-20 85.9
MS.gene041605.t1 MTR_1g074190 36.957 138 64 5 29 158 54 176 4.75e-20 89.0
MS.gene041605.t1 MTR_6g007737 35.374 147 73 5 25 160 71 206 6.07e-20 89.0
MS.gene041605.t1 MTR_7g073200 38.710 124 64 3 35 155 35 149 7.84e-20 84.7
MS.gene041605.t1 MTR_5g024730 34.759 187 91 7 29 203 34 201 9.63e-20 85.5
MS.gene041605.t1 MTR_5g082940 44.706 85 43 1 76 156 62 146 1.20e-19 84.3
MS.gene041605.t1 MTR_8g071815 37.681 138 67 4 33 163 15 140 1.34e-19 84.3
MS.gene041605.t1 MTR_4g106680 33.557 149 76 5 25 161 43 180 2.20e-19 86.3
MS.gene041605.t1 MTR_7g116220 47.368 76 35 2 86 156 67 142 3.77e-19 83.2
MS.gene041605.t1 MTR_4g129420 43.396 106 49 2 89 191 117 214 3.80e-19 87.4
MS.gene041605.t1 MTR_5g026730 41.584 101 50 3 76 169 52 150 4.44e-19 82.8
MS.gene041605.t1 MTR_8g066740 41.379 87 45 1 88 168 75 161 1.71e-18 84.0
MS.gene041605.t1 MTR_8g063660 35.971 139 82 3 24 158 4 139 2.29e-18 84.0
MS.gene041605.t1 MTR_5g076990 42.045 88 45 1 87 168 74 161 2.55e-18 83.6
MS.gene041605.t1 MTR_6g055030 43.023 86 44 2 85 165 93 178 2.86e-18 83.6
MS.gene041605.t1 MTR_5g034790 35.766 137 81 3 25 155 49 184 4.53e-18 83.6
MS.gene041605.t1 MTR_8g092960 44.444 72 37 1 87 155 101 172 6.69e-18 80.5
MS.gene041605.t1 MTR_8g092840 44.444 72 37 1 87 155 111 182 6.90e-18 80.9
MS.gene041605.t1 MTR_5g026720 36.792 106 59 3 75 172 48 153 7.26e-18 79.0
MS.gene041605.t1 MTR_7g116180 47.297 74 34 2 88 156 66 139 1.08e-17 79.3
MS.gene041605.t1 MTR_3g086730 32.370 173 83 5 29 182 1 158 1.12e-17 80.5
MS.gene041605.t1 MTR_7g076250 33.696 92 58 1 89 177 63 154 1.16e-17 79.3
MS.gene041605.t1 MTR_3g116000 35.385 130 68 3 29 155 30 146 1.20e-17 79.3
MS.gene041605.t1 MTR_1g070425 47.297 74 34 2 88 156 67 140 1.38e-17 79.0
MS.gene041605.t1 MTR_8g092985 43.243 74 39 1 85 155 107 180 1.57e-17 79.3
MS.gene041605.t1 MTR_8g093010 30.612 147 72 3 12 155 57 176 1.72e-17 79.7
MS.gene041605.t1 MTR_7g096690 31.469 143 77 5 24 160 20 147 2.51e-17 80.9
MS.gene041605.t1 MTR_3g086700 33.775 151 74 4 29 168 1 136 2.73e-17 78.2
MS.gene041605.t1 MTR_8g009190 35.971 139 73 2 25 158 23 150 2.93e-17 80.5
MS.gene041605.t1 MTR_3g078120 29.787 141 81 3 25 160 5 132 7.53e-17 76.3
MS.gene041605.t1 MTR_8g092930 43.662 71 37 1 88 155 111 181 8.18e-17 77.8
MS.gene041605.t1 MTR_2g055790 45.070 71 38 1 88 158 76 145 9.43e-17 77.0
MS.gene041605.t1 MTR_7g116200 47.143 70 36 1 88 156 67 136 1.62e-16 75.9
MS.gene041605.t1 MTR_5g022920 45.205 73 36 1 87 155 159 231 1.77e-16 77.0
MS.gene041605.t1 MTR_3g095560 63.636 44 16 0 112 155 135 178 5.20e-16 75.9
MS.gene041605.t1 MTR_2g044570 52.174 69 28 2 98 161 63 131 7.91e-16 76.3
MS.gene041605.t1 MTR_7g079280 36.782 87 51 1 89 171 80 166 8.06e-16 73.9
MS.gene041605.t1 MTR_2g041200 56.897 58 23 1 112 169 108 163 8.92e-16 73.9
MS.gene041605.t1 MTR_8g028465 36.047 86 55 0 86 171 87 172 9.02e-16 74.3
MS.gene041605.t1 MTR_4g056590 40.845 71 41 1 85 155 96 165 1.72e-15 73.6
MS.gene041605.t1 MTR_8g092970 61.364 44 17 0 112 155 130 173 1.74e-15 73.9
MS.gene041605.t1 MTR_8g092990 61.364 44 17 0 112 155 140 183 1.94e-15 73.9
MS.gene041605.t1 MTR_1g100737 38.158 76 40 1 88 156 91 166 2.29e-15 73.2
MS.gene041605.t1 MTR_7g116210 45.714 70 37 1 88 156 9 78 2.49e-15 70.9
MS.gene041605.t1 MTR_2g035800 40.541 74 42 1 89 160 76 149 4.46e-15 71.6
MS.gene041605.t1 MTR_3g078470 40.541 74 40 1 87 156 74 147 1.05e-14 72.0
MS.gene041605.t1 MTR_3g087900 50.820 61 28 2 99 158 55 114 1.25e-14 70.1
MS.gene041605.t1 MTR_3g078450 45.833 72 35 2 89 156 76 147 1.44e-14 71.6
MS.gene041605.t1 MTR_8g074900 43.056 72 39 1 84 155 153 222 1.80e-14 71.2
MS.gene041605.t1 MTR_4g094725 41.892 74 39 1 86 155 75 148 2.90e-14 69.3
MS.gene041605.t1 MTR_7g059360 41.379 87 40 1 112 198 157 232 2.95e-14 70.9
MS.gene041605.t1 MTR_5g092790 35.922 103 53 4 68 158 129 230 3.28e-14 70.9
MS.gene041605.t1 MTR_8g032690 35.526 76 48 1 100 174 5 80 3.94e-14 67.4
MS.gene041605.t1 MTR_3g114500 52.083 48 23 0 112 159 70 117 7.36e-14 67.4
MS.gene041605.t1 MTR_1g090480 35.556 90 52 2 89 172 72 161 1.40e-13 67.8
MS.gene041605.t1 MTR_8g027980 40.385 104 46 4 94 182 95 197 1.64e-13 69.3
MS.gene041605.t1 MTR_5g009210 45.205 73 32 2 89 155 287 357 2.05e-13 69.7
MS.gene041605.t1 MTR_5g092750 41.333 75 40 2 88 158 156 230 2.78e-13 68.2
MS.gene041605.t1 MTR_4g030070 35.556 90 49 2 89 169 85 174 3.04e-13 67.8
MS.gene041605.t1 MTR_5g009200 43.662 71 36 2 89 155 322 392 3.10e-13 69.7
MS.gene041605.t1 MTR_6g055030 49.206 63 31 1 104 165 85 147 4.49e-13 68.2
MS.gene041605.t1 MTR_5g009190 43.662 71 36 2 89 155 266 336 5.13e-13 68.6
MS.gene041605.t1 MTR_7g079290 34.091 88 47 2 79 155 110 197 6.40e-13 66.6
MS.gene041605.t1 MTR_3g078520 37.179 78 46 1 82 156 69 146 8.59e-13 65.5
MS.gene041605.t1 MTR_4g108830 39.241 79 43 2 83 158 143 219 9.39e-13 66.2
MS.gene041605.t1 MTR_6g007680 36.986 73 44 1 88 158 39 111 9.59e-13 65.1
MS.gene041605.t1 MTR_4g108830 39.241 79 43 2 83 158 115 191 1.13e-12 65.5
MS.gene041605.t1 MTR_1g026070 31.183 93 59 2 71 159 26 117 1.23e-12 64.3
MS.gene041605.t1 MTR_4g022410 55.102 49 22 0 112 160 112 160 2.06e-12 64.7
MS.gene041605.t1 MTR_1g056350 35.632 87 51 2 89 170 74 160 2.07e-12 64.3
MS.gene041605.t1 MTR_8g099495 38.356 73 37 2 89 155 319 389 2.66e-12 66.6
MS.gene041605.t1 MTR_3g081030 62.791 43 16 0 113 155 119 161 2.70e-12 65.1
MS.gene041605.t1 MTR_8g098770 43.836 73 40 1 98 169 71 143 3.42e-12 63.5
MS.gene041605.t1 MTR_3g012550 30.496 141 85 5 31 163 23 158 5.46e-12 63.5
MS.gene041605.t1 MTR_4g129335 42.857 70 38 1 95 162 82 151 7.57e-12 63.2
MS.gene041605.t1 MTR_4g129370 42.857 70 38 1 95 162 82 151 7.57e-12 63.2
MS.gene041605.t1 MTR_6g007670 34.568 81 48 2 95 174 14 90 8.54e-12 64.3
MS.gene041605.t1 MTR_1g090460 41.667 72 37 2 102 172 83 150 1.17e-11 62.0
MS.gene041605.t1 MTR_2g079320 54.545 44 20 0 112 155 158 201 1.25e-11 62.8
MS.gene041605.t1 MTR_8g099515 37.500 80 36 2 85 155 305 379 1.58e-11 64.3
MS.gene041605.t1 MTR_8g019710 47.917 48 25 0 112 159 53 100 2.59e-11 60.5
MS.gene041605.t1 MTR_5g066700 50.877 57 24 3 101 155 47 101 2.94e-11 60.5
MS.gene041605.t1 MTR_5g066690 50.877 57 24 3 101 155 47 101 4.66e-11 60.1
MS.gene041605.t1 MTR_8g027745 41.379 58 34 0 113 170 314 371 5.34e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041605.t1 AT3G16720 48.208 307 122 13 4 278 1 302 3.80e-66 209
MS.gene041605.t1 AT3G62690 45.890 146 71 3 18 161 22 161 1.70e-35 128
MS.gene041605.t1 AT4G15975 45.333 150 63 6 42 188 18 151 9.22e-35 125
MS.gene041605.t1 AT2G47560 34.959 246 114 7 16 254 20 226 4.77e-34 124
MS.gene041605.t1 AT1G72310 39.535 172 75 6 20 170 20 183 1.10e-29 114
MS.gene041605.t1 AT2G42360 31.923 260 118 8 3 257 10 215 2.88e-29 111
MS.gene041605.t1 AT1G53820 41.060 151 68 4 22 158 22 165 3.65e-28 110
MS.gene041605.t1 AT5G43420 36.538 156 71 4 19 158 40 183 1.67e-24 101
MS.gene041605.t1 AT4G40070 46.078 102 39 2 89 174 95 196 3.44e-24 99.8
MS.gene041605.t1 AT1G72200 34.653 202 109 7 35 227 66 253 3.97e-24 100
MS.gene041605.t1 AT5G58580 43.810 105 56 1 77 178 99 203 1.89e-23 97.4
MS.gene041605.t1 AT1G23980 36.735 147 68 3 24 156 52 187 2.60e-23 98.2
MS.gene041605.t1 AT2G35420 36.486 148 79 5 24 169 25 159 7.46e-23 94.7
MS.gene041605.t1 AT2G20030 58.333 72 28 1 89 158 98 169 8.84e-23 97.1
MS.gene041605.t1 AT1G04360 40.411 146 61 6 30 158 43 179 1.19e-22 96.7
MS.gene041605.t1 AT2G34990 35.616 146 71 4 25 162 15 145 1.37e-22 95.1
MS.gene041605.t1 AT2G34990 35.616 146 71 4 25 162 37 167 1.41e-22 95.5
MS.gene041605.t1 AT1G72220 32.093 215 121 7 26 223 83 289 1.57e-22 96.7
MS.gene041605.t1 AT5G17600 50.000 90 41 2 89 174 116 205 1.94e-22 95.5
MS.gene041605.t1 AT4G17905 29.167 216 135 6 25 226 61 272 2.08e-22 94.7
MS.gene041605.t1 AT3G05200 48.039 102 46 3 85 181 95 194 2.53e-22 95.9
MS.gene041605.t1 AT4G33565 59.211 76 27 2 89 161 191 265 2.93e-22 95.1
MS.gene041605.t1 AT4G17905 29.167 216 135 6 25 226 87 298 4.34e-22 94.4
MS.gene041605.t1 AT5G05810 56.164 73 30 1 89 159 120 192 4.83e-22 95.1
MS.gene041605.t1 AT2G27940 35.417 144 82 4 19 156 45 183 5.84e-22 92.0
MS.gene041605.t1 AT3G48030 35.099 151 92 2 25 172 41 188 1.34e-21 92.0
MS.gene041605.t1 AT4G28890 55.556 72 30 1 89 158 97 168 1.55e-21 94.0
MS.gene041605.t1 AT5G27420 36.478 159 63 6 86 234 92 222 2.20e-21 92.8
MS.gene041605.t1 AT2G35000 38.571 140 66 4 25 156 51 178 2.22e-21 92.8
MS.gene041605.t1 AT3G48030 35.065 154 88 3 25 172 119 266 4.04e-21 92.0
MS.gene041605.t1 AT1G22500 49.425 87 39 2 89 170 89 175 4.25e-21 92.0
MS.gene041605.t1 AT3G03550 36.552 145 78 3 25 156 59 202 4.53e-21 91.7
MS.gene041605.t1 AT3G14320 48.750 80 40 1 80 158 54 133 7.01e-21 88.6
MS.gene041605.t1 AT4G09120 47.000 100 45 3 71 162 73 172 1.05e-20 90.5
MS.gene041605.t1 AT3G10910 35.714 140 85 2 35 169 34 173 1.80e-20 86.7
MS.gene041605.t1 AT1G32361 34.884 129 66 3 54 170 101 223 1.81e-20 89.7
MS.gene041605.t1 AT1G35330 49.425 87 39 2 81 162 92 178 1.97e-20 89.7
MS.gene041605.t1 AT3G18773 34.899 149 80 5 10 155 38 172 2.76e-20 87.0
MS.gene041605.t1 AT5G05280 34.266 143 78 4 14 155 28 155 2.99e-20 85.9
MS.gene041605.t1 AT5G01880 49.383 81 39 1 77 155 67 147 3.24e-20 85.5
MS.gene041605.t1 AT5G42200 33.562 146 75 6 21 162 24 151 3.65e-20 85.5
MS.gene041605.t1 AT1G76410 48.649 74 35 1 85 155 73 146 5.01e-20 85.5
MS.gene041605.t1 AT5G40250 33.987 153 69 4 25 156 45 186 5.14e-20 89.0
MS.gene041605.t1 AT1G20823 37.594 133 67 5 29 155 31 153 6.45e-20 85.5
MS.gene041605.t1 AT1G49220 37.671 146 67 6 15 155 51 177 7.64e-20 86.7
MS.gene041605.t1 AT5G10380 53.425 73 30 2 89 158 109 180 1.08e-19 87.0
MS.gene041605.t1 AT4G09110 48.750 80 36 2 88 162 93 172 1.49e-19 86.7
MS.gene041605.t1 AT2G42350 50.685 73 35 1 88 159 74 146 2.04e-19 84.7
MS.gene041605.t1 AT4G30400 55.714 70 28 1 89 155 107 176 3.03e-19 87.4
MS.gene041605.t1 AT3G60220 44.231 104 44 2 92 190 91 185 4.71e-19 85.9
MS.gene041605.t1 AT2G18650 52.113 71 31 1 89 156 99 169 5.00e-19 86.7
MS.gene041605.t1 AT4G09100 48.684 76 34 1 88 158 55 130 7.52e-19 80.9
MS.gene041605.t1 AT4G09130 51.316 76 32 1 86 156 88 163 2.14e-18 84.3
MS.gene041605.t1 AT1G49200 35.172 145 72 5 15 155 52 178 2.40e-18 82.0
MS.gene041605.t1 AT5G66070 43.662 71 40 0 85 155 148 218 3.16e-18 81.6
MS.gene041605.t1 AT5G66070 43.662 71 40 0 85 155 148 218 3.16e-18 81.6
MS.gene041605.t1 AT5G66070 43.662 71 40 0 85 155 172 242 6.19e-18 81.3
MS.gene041605.t1 AT4G17245 34.810 158 76 6 16 172 31 162 1.24e-17 78.6
MS.gene041605.t1 AT3G18930 47.561 82 31 2 89 158 120 201 1.64e-17 82.0
MS.gene041605.t1 AT3G18930 47.561 82 31 2 89 158 120 201 1.64e-17 82.0
MS.gene041605.t1 AT3G18930 47.561 82 31 2 89 158 120 201 1.64e-17 82.0
MS.gene041605.t1 AT1G49210 34.722 144 74 5 15 155 51 177 1.69e-17 79.7
MS.gene041605.t1 AT4G17920 30.729 192 106 6 76 251 73 253 1.76e-17 80.9
MS.gene041605.t1 AT3G19140 46.250 80 42 1 81 159 46 125 3.72e-17 76.6
MS.gene041605.t1 AT3G11110 31.373 153 84 3 9 158 18 152 5.85e-17 76.6
MS.gene041605.t1 AT2G17450 33.824 136 61 4 29 155 29 144 9.03e-17 77.0
MS.gene041605.t1 AT1G74410 41.333 75 42 1 87 159 148 222 1.89e-16 76.6
MS.gene041605.t1 AT3G20395 42.647 68 39 0 88 155 146 213 7.57e-16 75.1
MS.gene041605.t1 AT5G57750 35.455 110 62 2 90 196 96 199 8.09e-16 74.7
MS.gene041605.t1 AT5G46650 31.724 145 87 4 17 155 19 157 8.21e-16 76.3
MS.gene041605.t1 AT2G46493 43.836 73 35 2 88 155 109 180 2.06e-15 73.2
MS.gene041605.t1 AT4G10150 28.834 163 97 6 10 162 7 160 2.38e-15 73.9
MS.gene041605.t1 AT1G33480 31.210 157 91 5 1 155 1 142 2.49e-15 74.3
MS.gene041605.t1 AT4G35840 40.541 74 39 1 87 155 160 233 2.90e-14 70.9
MS.gene041605.t1 AT5G47610 33.333 144 72 5 18 158 30 152 2.93e-14 69.7
MS.gene041605.t1 AT4G10160 28.105 153 94 6 23 172 18 157 3.32e-14 70.5
MS.gene041605.t1 AT2G46160 37.500 80 40 1 86 155 101 180 4.88e-14 70.1
MS.gene041605.t1 AT2G46160 37.500 80 40 1 86 155 101 180 4.88e-14 70.1
MS.gene041605.t1 AT5G53110 47.887 71 33 2 89 155 302 372 5.10e-14 72.0
MS.gene041605.t1 AT2G46494 31.061 132 75 4 34 155 233 358 5.44e-14 71.6
MS.gene041605.t1 AT2G18670 44.000 75 39 1 87 158 81 155 6.33e-14 68.9
MS.gene041605.t1 AT3G61550 36.082 97 48 2 85 168 95 190 6.76e-14 69.7
MS.gene041605.t1 AT4G35480 54.167 48 22 0 108 155 108 155 9.11e-14 68.9
MS.gene041605.t1 AT2G34000 40.541 74 38 1 88 155 60 133 1.74e-13 67.0
MS.gene041605.t1 AT1G28040 40.260 77 40 2 84 155 220 295 1.77e-13 69.7
MS.gene041605.t1 AT2G35910 36.905 84 51 1 89 170 121 204 2.15e-13 68.2
MS.gene041605.t1 AT2G17730 37.838 74 41 1 87 155 165 238 2.96e-13 68.2
MS.gene041605.t1 AT2G46495 42.105 76 37 2 86 155 288 362 3.31e-13 69.3
MS.gene041605.t1 AT2G46495 42.105 76 37 2 86 155 260 334 3.33e-13 69.3
MS.gene041605.t1 AT5G07040 43.243 74 38 2 86 155 63 136 3.58e-13 66.2
MS.gene041605.t1 AT4G30370 39.437 71 41 1 87 155 87 157 1.03e-12 65.5
MS.gene041605.t1 AT1G49230 59.091 44 18 0 112 155 130 173 1.14e-12 66.2
MS.gene041605.t1 AT4G24015 45.455 66 33 1 113 178 105 167 1.80e-12 64.7
MS.gene041605.t1 AT3G60966 56.000 50 22 0 113 162 62 111 1.93e-12 63.9
MS.gene041605.t1 AT2G25410 43.243 74 35 2 89 156 298 370 2.39e-12 67.0
MS.gene041605.t1 AT5G66160 29.197 137 68 5 22 155 164 274 5.04e-12 65.5
MS.gene041605.t1 AT1G80400 33.673 98 38 2 87 158 303 399 5.32e-12 65.9
MS.gene041605.t1 AT2G44578 48.000 50 26 0 113 162 70 119 8.67e-12 62.0
MS.gene041605.t1 AT5G66160 29.197 137 68 5 22 155 164 274 1.10e-11 64.3
MS.gene041605.t1 AT3G47990 41.558 77 43 2 82 158 148 222 1.44e-11 63.9
MS.gene041605.t1 AT3G47990 41.558 77 43 2 82 158 148 222 1.44e-11 63.9
MS.gene041605.t1 AT3G47990 41.558 77 43 2 82 158 148 222 1.44e-11 63.9
MS.gene041605.t1 AT3G47990 41.558 77 43 2 82 158 189 263 1.88e-11 63.9
MS.gene041605.t1 AT5G06490 39.655 58 35 0 113 170 129 186 2.34e-11 62.0
MS.gene041605.t1 AT3G47990 41.558 77 43 2 82 158 205 279 2.75e-11 63.5
MS.gene041605.t1 AT5G36001 43.103 58 33 0 113 170 264 321 3.06e-11 63.2
MS.gene041605.t1 AT2G44581 46.000 50 27 0 113 162 70 119 4.72e-11 60.1
MS.gene041605.t1 AT2G28920 48.936 47 24 0 113 159 93 139 7.09e-11 59.7
MS.gene041605.t1 AT1G53010 41.558 77 36 2 88 155 96 172 8.21e-11 60.1

Find 0 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGAAAACTATGATTACATT+TGG - 32557:23278-23297 None:intergenic 20.0%
!! TGAAAACTATGATTACATTT+GGG - 32557:23277-23296 None:intergenic 20.0%
!!! ATATTGATTGTATTGATATG+TGG + 32557:23296-23315 MS.gene041605:CDS 20.0%
!! ACAGAGCATTATTATGATAA+CGG - 32557:22990-23009 None:intergenic 25.0%
TGGAGGAAAATTTGAAAACT+GGG - 32557:23183-23202 None:intergenic 30.0%
TTCAAACTCCGATAAACAAA+CGG - 32557:23230-23249 None:intergenic 30.0%
TTGGAGGAAAATTTGAAAAC+TGG - 32557:23184-23203 None:intergenic 30.0%
! TTTCAAATTTTCCTCCAAGA+CGG + 32557:23186-23205 MS.gene041605:CDS 30.0%
AAAAGATGAAAGGTTGACGA+CGG - 32557:23084-23103 None:intergenic 35.0%
GAACAAGACGAAGAAAATTC+CGG - 32557:23469-23488 None:intergenic 35.0%
GTCTCAAATGAATTCGAACA+TGG + 32557:22889-22908 MS.gene041605:CDS 35.0%
TGTTTATCGGAGTTTGAAGA+TGG + 32557:23232-23251 MS.gene041605:CDS 35.0%
! ATCAATTGTCACTTCTTGTC+TGG - 32557:23386-23405 None:intergenic 35.0%
! GGTAGTATCGAATTAGGAAA+TGG - 32557:23015-23034 None:intergenic 35.0%
! GTAGAAGGTAGTATCGAATT+AGG - 32557:23021-23040 None:intergenic 35.0%
! GTGATTCACCATCATCTTTT+CGG + 32557:23584-23603 MS.gene041605:CDS 35.0%
! TCAACCTTTCATCTTTTACG+TGG + 32557:23087-23106 MS.gene041605:CDS 35.0%
!! TTATTATGATAACGGCGAAG+AGG - 32557:22982-23001 None:intergenic 35.0%
AAGAAAATTCCGGTTCAGAC+CGG - 32557:23459-23478 None:intergenic 40.0%
GAAAACAACTATGCACTCAG+CGG + 32557:22929-22948 MS.gene041605:CDS 40.0%
GACAATTGATGTGTGTGAAC+CGG + 32557:23396-23415 MS.gene041605:CDS 40.0%
GAGTTTGAAGATGGAGAAAC+GGG + 32557:23241-23260 MS.gene041605:CDS 40.0%
GGAGTTTGAAGATGGAGAAA+CGG + 32557:23240-23259 MS.gene041605:CDS 40.0%
TATTGCAGAACGAGGTGAAA+AGG + 32557:23696-23715 MS.gene041605:CDS 40.0%
TTACCATTGAGATTCCGAGA+AGG + 32557:23518-23537 MS.gene041605:CDS 40.0%
TTGGTTTCCTTTCTCTGCTA+AGG - 32557:23645-23664 None:intergenic 40.0%
! GTTCTGGTGATGAAATGAAC+CGG + 32557:23437-23456 MS.gene041605:CDS 40.0%
!! TGTGAACCGGAACTTGTTTT+GGG + 32557:23409-23428 MS.gene041605:CDS 40.0%
AACGACAACACACGACTCAT+TGG - 32557:23613-23632 None:intergenic 45.0%
AACGGCGAAGAGGATGATAA+TGG - 32557:22972-22991 None:intergenic 45.0%
ACCTCGTTCTGCAATATCTG+CGG - 32557:23692-23711 None:intergenic 45.0%
ACTCCTTCTCGGAATCTCAA+TGG - 32557:23524-23543 None:intergenic 45.0%
ATTGGCGACCGAAAAGATGA+TGG - 32557:23595-23614 None:intergenic 45.0%
CGAGAATCCTTAGCAGAGAA+AGG + 32557:23635-23654 MS.gene041605:CDS 45.0%
CTCGAACCCAAAACAAGTTC+CGG - 32557:23418-23437 None:intergenic 45.0%
GGAATGCGCCGTTTGTTTAT+CGG + 32557:23219-23238 MS.gene041605:CDS 45.0%
GGGTCCACGTAAAAGATGAA+AGG - 32557:23094-23113 None:intergenic 45.0%
TGAAATGAACCGGTCTGAAC+CGG + 32557:23447-23466 MS.gene041605:CDS 45.0%
TTGAAGATGGAGAAACGGGT+CGG + 32557:23245-23264 MS.gene041605:CDS 45.0%
! ATTTTCCTCCAAGACGGATC+AGG + 32557:23192-23211 MS.gene041605:CDS 45.0%
!! GTGTGAACCGGAACTTGTTT+TGG + 32557:23408-23427 MS.gene041605:CDS 45.0%
!!! CTTGTTTTGGGTTCGAGTTC+TGG + 32557:23421-23440 MS.gene041605:CDS 45.0%
ACCAAGCATTTCTCCGTCGT+TGG + 32557:23660-23679 MS.gene041605:CDS 50.0%
ATCACAACTCGACTCTCCCA+CGG - 32557:23569-23588 None:intergenic 50.0%
CCATCGGATTCACTCCTTCT+CGG - 32557:23535-23554 None:intergenic 50.0%
TCCAACGACGGAGAAATGCT+TGG - 32557:23664-23683 None:intergenic 50.0%
TCTTGTCTGGTCGCTTGAAC+CGG - 32557:23373-23392 None:intergenic 50.0%
TGAAAGGTTGACGACGGAGA+CGG - 32557:23078-23097 None:intergenic 50.0%
TGAAGATGGAGAAACGGGTC+GGG + 32557:23246-23265 MS.gene041605:CDS 50.0%
TGCAGAACGAGGTGAAAAGG+AGG + 32557:23699-23718 MS.gene041605:CDS 50.0%
!! GGCGAAGAGGATGATAATGG+CGG - 32557:22969-22988 None:intergenic 50.0%
AACTGGGAGCGACGAGATCA+CGG - 32557:23167-23186 None:intergenic 55.0%
CACGGCAAAGCTCTTGCCAT+CGG - 32557:23551-23570 None:intergenic 55.0%
CCGAGAAGGAGTGAATCCGA+TGG + 32557:23532-23551 MS.gene041605:CDS 55.0%
GACGTGTGCGATCACGTAGA+AGG - 32557:23036-23055 None:intergenic 55.0%
GATGGCAAGAGCTTTGCCGT+GGG + 32557:23550-23569 MS.gene041605:CDS 55.0%
GCCGCAGATATTGCAGAACG+AGG + 32557:23688-23707 MS.gene041605:CDS 55.0%
TCTGCGGCACAATCCAACGA+CGG - 32557:23676-23695 None:intergenic 55.0%
TTCCACCACCTGATCCGTCT+TGG - 32557:23203-23222 None:intergenic 55.0%
TTCCTCCAAGACGGATCAGG+TGG + 32557:23195-23214 MS.gene041605:CDS 55.0%
!! ACGAGATCACGGAGGCATCA+AGG - 32557:23156-23175 None:intergenic 55.0%
AAGGTTGACGACGGAGACGG+CGG - 32557:23075-23094 None:intergenic 60.0%
ACGGCGAGTGTCAGTGAAGC+AGG - 32557:23124-23143 None:intergenic 60.0%
ACTGACACTCGCCGTCTCTC+GGG + 32557:23129-23148 MS.gene041605:CDS 60.0%
CACCACCTGATCCGTCTTGG+AGG - 32557:23200-23219 None:intergenic 60.0%
CACTGACACTCGCCGTCTCT+CGG + 32557:23128-23147 MS.gene041605:CDS 60.0%
CGATGGCAAGAGCTTTGCCG+TGG + 32557:23549-23568 MS.gene041605:CDS 60.0%
CGGCGAGTGTCAGTGAAGCA+GGG - 32557:23123-23142 None:intergenic 60.0%
CTCCAAGACGGATCAGGTGG+TGG + 32557:23198-23217 MS.gene041605:CDS 60.0%
GGCGAGTGTCAGTGAAGCAG+GGG - 32557:23122-23141 None:intergenic 60.0%
GTCAGTGAAGCAGGGGCAGA+CGG - 32557:23115-23134 None:intergenic 60.0%
TCAGTGAAGCAGGGGCAGAC+GGG - 32557:23114-23133 None:intergenic 60.0%
TCCACGGGCGCTCTACAAAG+CGG - 32557:23343-23362 None:intergenic 60.0%
TTGAACCGGCGCAGCTTCCA+CGG - 32557:23359-23378 None:intergenic 60.0%
CTGACACTCGCCGTCTCTCG+GGG + 32557:23130-23149 MS.gene041605:CDS 65.0%
GACGACGGAGACGGCGGTTA+CGG - 32557:23069-23088 None:intergenic 65.0%
GGCATCAAGGCCCCGAGAGA+CGG - 32557:23143-23162 None:intergenic 65.0%
TGAACCGGCGCAGCTTCCAC+GGG - 32557:23358-23377 None:intergenic 65.0%
TGGGAGCGACGAGATCACGG+AGG - 32557:23164-23183 None:intergenic 65.0%
! TCCGCTTTGTAGAGCGCCCG+TGG + 32557:23339-23358 MS.gene041605:CDS 65.0%
GACGGAGACGGCGGTTACGG+CGG - 32557:23066-23085 None:intergenic 70.0%
AGCGCCCGTGGAAGCTGCGC+CGG + 32557:23351-23370 MS.gene041605:CDS 75.0%
GGAGACGGCGGTTACGGCGG+AGG - 32557:23063-23082 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
32557 gene 22887 23732 22887 ID=MS.gene041605
32557 mRNA 22887 23732 22887 ID=MS.gene041605.t1;Parent=MS.gene041605
32557 exon 22887 23732 22887 ID=MS.gene041605.t1.exon1;Parent=MS.gene041605.t1
32557 CDS 22887 23732 22887 ID=cds.MS.gene041605.t1;Parent=MS.gene041605.t1
Gene Sequence

>MS.gene041605

ATGTCTCAAATGAATTCGAACATGGAGAATGAAAGAGAAATCGAAAACAACTATGCACTCAGCGGCAAGATAATGCTAACCGCCATTATCATCCTCTTCGCCGTTATCATAATAATGCTCTGTCTCCATTTCCTAATTCGATACTACCTTCTACGTGATCGCACACGTCAACACCTCCGCCGTAACCGCCGTCTCCGTCGTCAACCTTTCATCTTTTACGTGGACCCGTCTGCCCCTGCTTCACTGACACTCGCCGTCTCTCGGGGCCTTGATGCCTCCGTGATCTCGTCGCTCCCAGTTTTCAAATTTTCCTCCAAGACGGATCAGGTGGTGGAATGCGCCGTTTGTTTATCGGAGTTTGAAGATGGAGAAACGGGTCGGGTTTTACCCAAATGTAATCATAGTTTTCATATTGATTGTATTGATATGTGGTTTCAGTCTCATTCTACATGTCCGCTTTGTAGAGCGCCCGTGGAAGCTGCGCCGGTTCAAGCGACCAGACAAGAAGTGACAATTGATGTGTGTGAACCGGAACTTGTTTTGGGTTCGAGTTCTGGTGATGAAATGAACCGGTCTGAACCGGAATTTTCTTCGTCTTGTTCTAATGAGAAGCAATCTTCATTTGTTGACATTACCATTGAGATTCCGAGAAGGAGTGAATCCGATGGCAAGAGCTTTGCCGTGGGAGAGTCGAGTTGTGATTCACCATCATCTTTTCGGTCGCCAATGAGTCGTGTGTTGTCGTTCACGAGAATCCTTAGCAGAGAAAGGAAACCAAGCATTTCTCCGTCGTTGGATTGTGCCGCAGATATTGCAGAACGAGGTGAAAAGGAGGAGACTCAGTGA
Protein sequence

>MS.gene041605.t1

MSQMNSNMENEREIENNYALSGKIMLTAIIILFAVIIIMLCLHFLIRYYLLRDRTRQHLRRNRRLRRQPFIFYVDPSAPASLTLAVSRGLDASVISSLPVFKFSSKTDQVVECAVCLSEFEDGETGRVLPKCNHSFHIDCIDMWFQSHSTCPLCRAPVEAAPVQATRQEVTIDVCEPELVLGSSSGDEMNRSEPEFSSSCSNEKQSSFVDITIEIPRRSESDGKSFAVGESSCDSPSSFRSPMSRVLSFTRILSRERKPSISPSLDCAADIAERGEKEETQ