Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041760.t1 | GAU15903.1 | 98.2 | 331 | 6 | 0 | 2 | 332 | 365 | 695 | 1.50E-177 | 632.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041760.t1 | Q7ZY36 | 21.8 | 344 | 248 | 7 | 6 | 331 | 28 | 368 | 1.2e-15 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041760.t1 | G7I9M5 | 97.9 | 331 | 7 | 0 | 2 | 332 | 359 | 689 | 1.2e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene041760 | MS.gene002926 | PPI |
| MS.gene041760 | MS.gene072058 | PPI |
| MS.gene01884 | MS.gene041760 | PPI |
| MS.gene047966 | MS.gene041760 | PPI |
| MS.gene041760 | MS.gene00617 | PPI |
| MS.gene041760 | MS.gene00843 | PPI |
| MS.gene041760 | MS.gene047200 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041760.t1 | MTR_1g095780 | 98.489 | 331 | 5 | 0 | 2 | 332 | 359 | 689 | 0.0 | 676 |
| MS.gene041760.t1 | MTR_1g095780 | 98.024 | 253 | 5 | 0 | 2 | 254 | 359 | 611 | 1.08e-180 | 513 |
| MS.gene041760.t1 | MTR_7g084400 | 21.449 | 345 | 248 | 8 | 3 | 328 | 37 | 377 | 2.25e-18 | 85.9 |
| MS.gene041760.t1 | MTR_3g025800 | 28.351 | 194 | 97 | 5 | 164 | 319 | 24 | 213 | 8.98e-18 | 83.6 |
| MS.gene041760.t1 | MTR_8g096050 | 22.965 | 344 | 242 | 10 | 3 | 328 | 57 | 395 | 1.52e-17 | 83.6 |
| MS.gene041760.t1 | MTR_7g084400 | 21.368 | 351 | 247 | 9 | 3 | 328 | 37 | 383 | 2.73e-16 | 79.7 |
| MS.gene041760.t1 | MTR_7g084400 | 28.144 | 167 | 96 | 5 | 169 | 318 | 310 | 469 | 9.07e-12 | 66.2 |
| MS.gene041760.t1 | MTR_8g092080 | 30.409 | 171 | 103 | 4 | 163 | 329 | 47 | 205 | 4.13e-16 | 78.2 |
| MS.gene041760.t1 | MTR_3g098460 | 20.991 | 343 | 246 | 9 | 3 | 326 | 35 | 371 | 1.56e-15 | 77.4 |
| MS.gene041760.t1 | MTR_1g097890 | 27.485 | 171 | 108 | 3 | 163 | 329 | 46 | 204 | 6.66e-15 | 74.7 |
| MS.gene041760.t1 | MTR_6g034515 | 28.966 | 145 | 95 | 2 | 180 | 318 | 79 | 221 | 8.69e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041760.t1 | AT2G35800 | 86.707 | 331 | 44 | 0 | 2 | 332 | 379 | 709 | 0.0 | 608 |
| MS.gene041760.t1 | AT2G26360 | 69.492 | 177 | 53 | 1 | 157 | 332 | 104 | 280 | 2.41e-82 | 255 |
| MS.gene041760.t1 | AT1G74240 | 28.421 | 190 | 102 | 3 | 164 | 319 | 32 | 221 | 9.31e-19 | 86.3 |
| MS.gene041760.t1 | AT1G74240 | 27.746 | 173 | 91 | 3 | 181 | 319 | 1 | 173 | 1.69e-15 | 76.6 |
| MS.gene041760.t1 | AT5G61810 | 21.994 | 341 | 245 | 10 | 3 | 328 | 38 | 372 | 1.86e-15 | 77.4 |
| MS.gene041760.t1 | AT1G34065 | 33.121 | 157 | 89 | 4 | 167 | 319 | 74 | 218 | 3.74e-15 | 75.9 |
| MS.gene041760.t1 | AT1G34065 | 33.121 | 157 | 89 | 4 | 167 | 319 | 81 | 225 | 4.17e-15 | 75.5 |
| MS.gene041760.t1 | AT4G39460 | 29.139 | 151 | 99 | 1 | 169 | 319 | 59 | 201 | 4.18e-14 | 72.4 |
| MS.gene041760.t1 | AT4G39460 | 29.139 | 151 | 99 | 1 | 169 | 319 | 59 | 201 | 4.18e-14 | 72.4 |
| MS.gene041760.t1 | AT4G39460 | 29.139 | 151 | 99 | 1 | 169 | 319 | 59 | 201 | 4.18e-14 | 72.4 |
| MS.gene041760.t1 | AT5G51050 | 22.636 | 349 | 239 | 13 | 3 | 328 | 53 | 393 | 8.59e-13 | 69.3 |
| MS.gene041760.t1 | AT4G11440 | 27.907 | 172 | 119 | 2 | 166 | 332 | 328 | 499 | 4.24e-12 | 67.4 |
| MS.gene041760.t1 | AT4G11440 | 27.907 | 172 | 119 | 2 | 166 | 332 | 328 | 499 | 4.24e-12 | 67.4 |
| MS.gene041760.t1 | AT5G61810 | 28.409 | 176 | 112 | 5 | 169 | 332 | 157 | 330 | 8.74e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAAATATTCATAAAAGA+CGG | - | 11234:660-679 | MS.gene041760:CDS | 10.0% |
| !! | AAATATACGTAATAGAAAAT+AGG | + | 11234:2030-2049 | MS.gene041760:intergenic | 15.0% |
| !! | ATAATTATCCTTAATAACAA+TGG | + | 11234:2726-2745 | MS.gene041760:intergenic | 15.0% |
| !! | ATTTGAAAAATGATAATCTA+AGG | + | 11234:2853-2872 | MS.gene041760:intergenic | 15.0% |
| !! | TTTGAAAAATGATAATCTAA+GGG | + | 11234:2852-2871 | MS.gene041760:intergenic | 15.0% |
| !!! | AATTATTTTTTGTTAAGTGA+GGG | - | 11234:3253-3272 | MS.gene041760:CDS | 15.0% |
| !!! | ATAAAAATTTTATGCACTTT+TGG | - | 11234:3163-3182 | MS.gene041760:CDS | 15.0% |
| !!! | ATTTTCATTATCATCAAAAA+GGG | - | 11234:805-824 | MS.gene041760:intron | 15.0% |
| !!! | ATTTTCTATTACGTATATTT+TGG | - | 11234:2030-2049 | MS.gene041760:intron | 15.0% |
| !!! | TAATTATTTTTTGTTAAGTG+AGG | - | 11234:3252-3271 | MS.gene041760:CDS | 15.0% |
| !!! | TTTTCTATTACGTATATTTT+GGG | - | 11234:2031-2050 | MS.gene041760:intron | 15.0% |
| !! | ACCATTGAATATTATTTCAA+AGG | - | 11234:3288-3307 | MS.gene041760:CDS | 20.0% |
| !! | AGATGATTAATAAATATACC+AGG | - | 11234:2292-2311 | MS.gene041760:intron | 20.0% |
| !! | ATATAGTTATTAGGTAGTAT+TGG | - | 11234:2503-2522 | MS.gene041760:intron | 20.0% |
| !! | ATCTCTCTTATATAGTTATT+AGG | - | 11234:2494-2513 | MS.gene041760:intron | 20.0% |
| !! | ATTGAAGAAAAGTGAAATAT+TGG | - | 11234:1067-1086 | MS.gene041760:intron | 20.0% |
| !! | GTTCATTATATTGTTTGAAA+GGG | - | 11234:3473-3492 | MS.gene041760:CDS | 20.0% |
| !! | TTGAATATTATTTCAAAGGA+AGG | - | 11234:3292-3311 | MS.gene041760:CDS | 20.0% |
| !!! | AAATTTTTATGCACTTTTAG+CGG | - | 11234:2903-2922 | MS.gene041760:intron | 20.0% |
| !!! | CATTTTCATTATCATCAAAA+AGG | - | 11234:804-823 | MS.gene041760:intron | 20.0% |
| !!! | TCCTTTGAAATAATATTCAA+TGG | + | 11234:3292-3311 | MS.gene041760:intergenic | 20.0% |
| !!! | TTATTTGAGTTATCAACTTT+TGG | - | 11234:2205-2224 | MS.gene041760:intron | 20.0% |
| ! | AATCTAATCATGTTGCAAAA+AGG | + | 11234:1287-1306 | MS.gene041760:intergenic | 25.0% |
| ! | ACAGAAGAATCTATTTCATA+TGG | - | 11234:1164-1183 | MS.gene041760:intron | 25.0% |
| ! | AGCTTATATTCTCAAGATAA+AGG | + | 11234:1839-1858 | MS.gene041760:intergenic | 25.0% |
| ! | ATGCTCTTATATCAAATAAG+AGG | - | 11234:3228-3247 | MS.gene041760:CDS | 25.0% |
| ! | GAAACAATTCTTATCATTCA+TGG | - | 11234:983-1002 | MS.gene041760:intron | 25.0% |
| ! | GGTTCATTATATTGTTTGAA+AGG | - | 11234:3472-3491 | MS.gene041760:CDS | 25.0% |
| ! | TACAGAAATGATAATCTATG+AGG | + | 11234:3534-3553 | MS.gene041760:intergenic | 25.0% |
| ! | TATATTCTCAAGATAAAGGA+AGG | + | 11234:1835-1854 | MS.gene041760:intergenic | 25.0% |
| ! | TCATAGATTATCATTTCTGT+AGG | - | 11234:3533-3552 | MS.gene041760:intron | 25.0% |
| ! | TGCTCTTATATCAAATAAGA+GGG | - | 11234:3229-3248 | MS.gene041760:CDS | 25.0% |
| !! | AATTTGTGGTTAATGAGTTT+TGG | - | 11234:2436-2455 | MS.gene041760:intron | 25.0% |
| !! | GATATTTGAAGCAAGTAAAT+TGG | - | 11234:1953-1972 | MS.gene041760:intron | 25.0% |
| !! | GTTAATCACATTCAATTTTG+TGG | + | 11234:2350-2369 | MS.gene041760:intergenic | 25.0% |
| !! | TGGTTTTCTGCATTATATAA+CGG | - | 11234:2171-2190 | MS.gene041760:intron | 25.0% |
| !! | TGTGATTAACTACAATTTTG+AGG | - | 11234:2360-2379 | MS.gene041760:CDS | 25.0% |
| !!! | ACAAAGATGATTCTTTTTTG+AGG | - | 11234:743-762 | MS.gene041760:CDS | 25.0% |
| !!! | ACTCTTTTTTTACAGCTAAA+AGG | + | 11234:2929-2948 | MS.gene041760:intergenic | 25.0% |
| AAAACAAGTGACTTCTAGTA+CGG | + | 11234:947-966 | MS.gene04176:intergenic | 30.0% | |
| AATAGGATGAAGAAATTACC+TGG | + | 11234:2013-2032 | MS.gene04176:intergenic | 30.0% | |
| ACAAGCAAAATTGTTCTCTT+TGG | + | 11234:573-592 | MS.gene04176:intergenic | 30.0% | |
| AGTAGAACACCTGAAAATTA+TGG | - | 11234:2400-2419 | MS.gene041760:intron | 30.0% | |
| ATTAACCACAAATTTGAACG+TGG | + | 11234:2430-2449 | MS.gene041760:intergenic | 30.0% | |
| CTGAATGCATAATCATAACA+AGG | + | 11234:1403-1422 | MS.gene041760:intergenic | 30.0% | |
| CTTATCATTCATGGAACAAA+AGG | - | 11234:992-1011 | MS.gene041760:intron | 30.0% | |
| CTTGACTATACAATCATACA+TGG | + | 11234:3392-3411 | MS.gene041760:intergenic | 30.0% | |
| GCTTTATGCTGAATCAAAAA+AGG | - | 11234:3767-3786 | MS.gene041760:intron | 30.0% | |
| GTGTTTAACACAGTTCAAAT+AGG | + | 11234:2464-2483 | MS.gene041760:intergenic | 30.0% | |
| GTTGTTAGCACAATTCAAAT+AGG | - | 11234:2251-2270 | MS.gene041760:intron | 30.0% | |
| TAAAAGTTACTTAACAGCAC+TGG | + | 11234:3358-3377 | MS.gene041760:intergenic | 30.0% | |
| TAATATGTCATTCCAGAGTT+CGG | + | 11234:772-791 | MS.gene041760:intergenic | 30.0% | |
| TGAATCTTAACCATTGATGA+TGG | + | 11234:1360-1379 | MS.gene041760:intergenic | 30.0% | |
| TGACTATTCAATGATTGAGA+AGG | + | 11234:1877-1896 | MS.gene041760:intergenic | 30.0% | |
| TGATAATCTATGAGGCTAAA+AGG | + | 11234:3526-3545 | MS.gene041760:intergenic | 30.0% | |
| TTCATTATCATCAAAAAGGG+AGG | - | 11234:808-827 | MS.gene041760:intron | 30.0% | |
| ! | AACATGTGCCATTGTTATTA+AGG | - | 11234:2715-2734 | MS.gene041760:intron | 30.0% |
| ! | CTTGTTATGATTATGCATTC+AGG | - | 11234:1401-1420 | MS.gene041760:intron | 30.0% |
| ! | GCATTTGCAACATTTTCATA+AGG | + | 11234:2809-2828 | MS.gene041760:intergenic | 30.0% |
| ! | TCATTTTCCTTTCAATCTCA+TGG | - | 11234:1894-1913 | MS.gene041760:intron | 30.0% |
| ! | TCCTTTTGTTCAATACTTTC+TGG | - | 11234:2151-2170 | MS.gene041760:intron | 30.0% |
| !! | ACCAGAAAGTATTGAACAAA+AGG | + | 11234:2155-2174 | MS.gene041760:intergenic | 30.0% |
| !! | AGAGGATATTTTTACGAGAA+AGG | + | 11234:3422-3441 | MS.gene041760:intergenic | 30.0% |
| !! | ATTATGCATTCAGGAGTATT+TGG | - | 11234:1410-1429 | MS.gene041760:intron | 30.0% |
| !! | GAAAGTATTGAACAAAAGGA+AGG | + | 11234:2151-2170 | MS.gene041760:intergenic | 30.0% |
| !!! | AAAGTTTTGTTGATGGTTGA+TGG | + | 11234:2321-2340 | MS.gene041760:intergenic | 30.0% |
| AAAACTGTCCAAGAATTGCA+GGG | + | 11234:1773-1792 | MS.gene04176:intergenic | 35.0% | |
| AAAGCTACCATGAGATTGAA+AGG | + | 11234:1904-1923 | MS.gene04176:intergenic | 35.0% | |
| AATTATTTCAGGGAAGGACA+TGG | + | 11234:1703-1722 | MS.gene04176:intergenic | 35.0% | |
| AATTCTTTAGCATACCTTCG+TGG | + | 11234:918-937 | MS.gene04176:intergenic | 35.0% | |
| ATCTCGAAATTGCAATGAGA+AGG | - | 11234:883-902 | MS.gene041760:intron | 35.0% | |
| CCACTTACAAGAGAAATGTT+GGG | - | 11234:2635-2654 | MS.gene041760:CDS | 35.0% | |
| CTTAGCAATTATTTCAGGGA+AGG | + | 11234:1709-1728 | MS.gene041760:intergenic | 35.0% | |
| GCAGCTTAGCAATTATTTCA+GGG | + | 11234:1713-1732 | MS.gene041760:intergenic | 35.0% | |
| GTCAGTACTTACTTACCTAT+CGG | - | 11234:1323-1342 | MS.gene041760:intron | 35.0% | |
| GTTAACCACGTTCAAATTTG+TGG | - | 11234:2422-2441 | MS.gene041760:intron | 35.0% | |
| GTTGCAAATGCTTTCAATTG+AGG | - | 11234:2818-2837 | MS.gene041760:CDS | 35.0% | |
| TCCACTTACAAGAGAAATGT+TGG | - | 11234:2634-2653 | MS.gene041760:CDS | 35.0% | |
| TCTACCTTGATTGAATCAAC+TGG | + | 11234:1553-1572 | MS.gene041760:intergenic | 35.0% | |
| TCTCTTGTAAGTGGAAAAGT+AGG | + | 11234:2629-2648 | MS.gene041760:intergenic | 35.0% | |
| TGAAAATAGTCCTCTTACCT+AGG | + | 11234:1242-1261 | MS.gene041760:intergenic | 35.0% | |
| TTAAAGTTGCTGCGTTATCA+AGG | - | 11234:2526-2545 | MS.gene041760:intron | 35.0% | |
| TTGACGATATAGCCAAACTA+CGG | - | 11234:2556-2575 | MS.gene041760:CDS | 35.0% | |
| TTGGAGTCACTAAAGAATTC+AGG | - | 11234:1086-1105 | MS.gene041760:intron | 35.0% | |
| ! | AAACCCTTCTAGAAAAGACA+AGG | + | 11234:2691-2710 | MS.gene041760:intergenic | 35.0% |
| ! | ATCATTCTGTAGCACGTTTT+TGG | - | 11234:3569-3588 | MS.gene041760:intron | 35.0% |
| ! | CAATTCTTGGACAGTTTTCA+AGG | - | 11234:1775-1794 | MS.gene041760:intron | 35.0% |
| ! | CGTGGTTAACCATAATTTTC+AGG | + | 11234:2412-2431 | MS.gene041760:intergenic | 35.0% |
| ! | TCATTCTGTAGCACGTTTTT+GGG | - | 11234:3570-3589 | MS.gene041760:intron | 35.0% |
| ! | TGTTTTCTAGGTCTTTTGGT+TGG | - | 11234:961-980 | MS.gene041760:intron | 35.0% |
| !! | AAGTGTTCTAAGATCTGCAT+TGG | - | 11234:1486-1505 | MS.gene041760:intron | 35.0% |
| !! | AGCTTTTGAAAATGTAGCCA+TGG | - | 11234:1918-1937 | MS.gene041760:intron | 35.0% |
| !! | ATCTTAACCATTGATGATGG+TGG | + | 11234:1357-1376 | MS.gene041760:intergenic | 35.0% |
| !! | CACTTGTTTTCTAGGTCTTT+TGG | - | 11234:957-976 | MS.gene041760:intron | 35.0% |
| !! | CGAGATCTTCTAAAGTTACT+TGG | + | 11234:869-888 | MS.gene041760:intergenic | 35.0% |
| !! | CTAGAAGTCACTTGTTTTCT+AGG | - | 11234:949-968 | MS.gene041760:intron | 35.0% |
| !!! | GTTGCTGAAAGTTTTGTTGA+TGG | + | 11234:2328-2347 | MS.gene041760:intergenic | 35.0% |
| ACAGCATTGTCTTCATTTGC+AGG | + | 11234:1116-1135 | MS.gene04176:intergenic | 40.0% | |
| ACCTGGAGTTCATGTAAGTT+TGG | + | 11234:1996-2015 | MS.gene04176:intergenic | 40.0% | |
| ATGCAGTAATGCACATGACA+GGG | + | 11234:1530-1549 | MS.gene041760:intergenic | 40.0% | |
| CAACTTCTGTGGTTGACAAT+AGG | - | 11234:3451-3470 | MS.gene041760:CDS | 40.0% | |
| CCCAACATTTCTCTTGTAAG+TGG | + | 11234:2638-2657 | MS.gene041760:intergenic | 40.0% | |
| CCTATACTCTTCTCTCGTAA+TGG | - | 11234:3330-3349 | MS.gene041760:CDS | 40.0% | |
| CTCTGTGTTTAACCAAGTCA+GGG | - | 11234:1042-1061 | MS.gene041760:intron | 40.0% | |
| GAAAACTGTCCAAGAATTGC+AGG | + | 11234:1774-1793 | MS.gene041760:intergenic | 40.0% | |
| GAAACTTTACTGCCGTAGTT+TGG | + | 11234:2571-2590 | MS.gene041760:intergenic | 40.0% | |
| GGCAGCTTAGCAATTATTTC+AGG | + | 11234:1714-1733 | MS.gene041760:intergenic | 40.0% | |
| GTGTATGCACGAAGAATTGT+AGG | + | 11234:1020-1039 | MS.gene041760:intergenic | 40.0% | |
| TAAAAGACGGCTCAGTCTTA+TGG | - | 11234:673-692 | MS.gene041760:CDS | 40.0% | |
| TCAACTTCCACCATCATCAA+TGG | - | 11234:1347-1366 | MS.gene041760:intron | 40.0% | |
| TCCAAACTTACATGAACTCC+AGG | - | 11234:1992-2011 | MS.gene041760:intron | 40.0% | |
| TCTCTGTGTTTAACCAAGTC+AGG | - | 11234:1041-1060 | MS.gene041760:intron | 40.0% | |
| TTTCTTCAATGTCCCTGACT+TGG | + | 11234:1057-1076 | MS.gene041760:intergenic | 40.0% | |
| TTTGAAGAGCTGGATAGAGA+TGG | - | 11234:837-856 | MS.gene041760:intron | 40.0% | |
| ! | AGCTCCTTGTCTTTTCTAGA+AGG | - | 11234:2684-2703 | MS.gene041760:intron | 40.0% |
| ! | ATTGAACAAAAGGAAGGCAC+TGG | + | 11234:2145-2164 | MS.gene041760:intergenic | 40.0% |
| ! | CATTTTATGTTGCTGGCATG+GGG | - | 11234:3745-3764 | MS.gene041760:intron | 40.0% |
| ! | CCATTACGAGAGAAGAGTAT+AGG | + | 11234:3333-3352 | MS.gene041760:intergenic | 40.0% |
| ! | CCATTTTATGTTGCTGGCAT+GGG | - | 11234:3744-3763 | MS.gene041760:intron | 40.0% |
| ! | CTTTTTGCTTGCGCATTGTT+TGG | - | 11234:2084-2103 | MS.gene041760:intron | 40.0% |
| ! | GAAGCAGAAGCATGAAATTG+CGG | + | 11234:1196-1215 | MS.gene041760:intergenic | 40.0% |
| ! | GAGGTTCCATTTTATGTTGC+TGG | - | 11234:3738-3757 | MS.gene041760:intron | 40.0% |
| ! | GCACACAATTCCATGACTTT+TGG | - | 11234:1621-1640 | MS.gene041760:intron | 40.0% |
| ! | GCATCCAGTTGATTCAATCA+AGG | - | 11234:1546-1565 | MS.gene041760:intron | 40.0% |
| ! | TCCATTTTATGTTGCTGGCA+TGG | - | 11234:3743-3762 | MS.gene041760:intron | 40.0% |
| ! | TCTTTTCAACAATGTGGGTG+AGG | - | 11234:3644-3663 | MS.gene041760:intron | 40.0% |
| !! | GCTCCTTGTCTTTTCTAGAA+GGG | - | 11234:2685-2704 | MS.gene041760:intron | 40.0% |
| !! | TTGAACAAAAGGAAGGCACT+GGG | + | 11234:2144-2163 | MS.gene041760:intergenic | 40.0% |
| !!! | GCTGGTCTTTTCAACAATGT+GGG | - | 11234:3639-3658 | MS.gene041760:intron | 40.0% |
| ATCGTCTTCAAGAGGATCCT+AGG | - | 11234:1222-1241 | MS.gene041760:intron | 45.0% | |
| ATTGCTAAGCTGCCAGAGAT+TGG | - | 11234:1720-1739 | MS.gene041760:intron | 45.0% | |
| CAGAAGTTGTATCGAGTGAG+AGG | + | 11234:3440-3459 | MS.gene041760:intergenic | 45.0% | |
| CAGCAAATAAGACGACGATG+AGG | + | 11234:1650-1669 | MS.gene041760:intergenic | 45.0% | |
| CCCATGCCAGCAACATAAAA+TGG | + | 11234:3747-3766 | MS.gene041760:intergenic | 45.0% | |
| CTCACTCGATACAACTTCTG+TGG | - | 11234:3440-3459 | MS.gene041760:CDS | 45.0% | |
| CTTCAAATATCCCAGTTCGC+AGG | + | 11234:1944-1963 | MS.gene041760:intergenic | 45.0% | |
| GATCTTAGAACACTTCCAGC+AGG | + | 11234:1481-1500 | MS.gene041760:intergenic | 45.0% | |
| GATGAGGAAGCCAAAAGTCA+TGG | + | 11234:1634-1653 | MS.gene041760:intergenic | 45.0% | |
| GATGCAGTAATGCACATGAC+AGG | + | 11234:1531-1550 | MS.gene041760:intergenic | 45.0% | |
| GGTGTTAAAGCAGAGATTGC+AGG | - | 11234:3617-3636 | MS.gene041760:intron | 45.0% | |
| GGTTCAATCCCTGCAATTCT+TGG | - | 11234:1762-1781 | MS.gene041760:intron | 45.0% | |
| TCAAGAGGATCCTAGGTAAG+AGG | - | 11234:1229-1248 | MS.gene041760:intron | 45.0% | |
| TGCTGCGTTATCAAGGAAAG+TGG | - | 11234:2533-2552 | MS.gene041760:intron | 45.0% | |
| TTAAAGCAGAGATTGCAGGC+TGG | - | 11234:3621-3640 | MS.gene041760:intron | 45.0% | |
| TTGCTAAGCTGCCAGAGATT+GGG | - | 11234:1721-1740 | MS.gene041760:intron | 45.0% | |
| TTTCATGCTTCTGCTTCCCT+CGG | - | 11234:1199-1218 | MS.gene041760:intron | 45.0% | |
| ! | GAGGAGATTCTTTGAAGAGC+TGG | - | 11234:827-846 | MS.gene041760:intron | 45.0% |
| ! | TGGCAGCAAGATGGTCTTAA+GGG | - | 11234:3681-3700 | MS.gene041760:intron | 45.0% |
| ! | TTGGCAGCAAGATGGTCTTA+AGG | - | 11234:3680-3699 | MS.gene041760:intron | 45.0% |
| !! | GTTCTAAGATCTGCATTGGC+CGG | - | 11234:1490-1509 | MS.gene041760:intron | 45.0% |
| !! | TGAACAAAAGGAAGGCACTG+GGG | + | 11234:2143-2162 | MS.gene041760:intergenic | 45.0% |
| !!! | AAGGGCTTTTTTCGTGGAAC+CGG | - | 11234:3699-3718 | MS.gene041760:intron | 45.0% |
| !!! | GGCTGGTCTTTTCAACAATG+TGG | - | 11234:3638-3657 | MS.gene041760:intron | 45.0% |
| !!! | GGTCTTAAGGGCTTTTTTCG+TGG | - | 11234:3693-3712 | MS.gene041760:intron | 45.0% |
| !!! | TTTTTGAGGTCACCGAACTC+TGG | - | 11234:757-776 | MS.gene041760:CDS | 45.0% |
| ACTTCCAGCAGGCATTTCGA+CGG | + | 11234:1470-1489 | MS.gene04176:intergenic | 50.0% | |
| ATCCTCTTGAAGACGATCCG+AGG | + | 11234:1219-1238 | MS.gene041760:intergenic | 50.0% | |
| CAACAATGTGGGTGAGGCTT+TGG | - | 11234:3650-3669 | MS.gene041760:intron | 50.0% | |
| CACATGACAGGGCACAAGAA+AGG | + | 11234:1519-1538 | MS.gene041760:intergenic | 50.0% | |
| CTCTGCTTTAACACCTCGCA+GGG | + | 11234:3612-3631 | MS.gene041760:intergenic | 50.0% | |
| GAAGGAGAAAGCTTCCACGA+AGG | - | 11234:901-920 | MS.gene041760:intron | 50.0% | |
| GAGCTGGATAGAGATGGTGA+TGG | - | 11234:843-862 | MS.gene041760:intron | 50.0% | |
| TCCTCTTGAAGACGATCCGA+GGG | + | 11234:1218-1237 | MS.gene041760:intergenic | 50.0% | |
| TCTCTGCTTTAACACCTCGC+AGG | + | 11234:3613-3632 | MS.gene041760:intergenic | 50.0% | |
| TGACATGAGCTGAACAGCTC+AGG | + | 11234:2593-2612 | MS.gene041760:intergenic | 50.0% | |
| TGGAACCTCTCGACAAAGAG+TGG | + | 11234:3727-3746 | MS.gene041760:intergenic | 50.0% | |
| TGGGACGCGTGGTTTATACA+GGG | - | 11234:1740-1759 | MS.gene041760:intron | 50.0% | |
| TTGGGACGCGTGGTTTATAC+AGG | - | 11234:1739-1758 | MS.gene041760:intron | 50.0% | |
| ! | AATGTGGGTGAGGCTTTGGT+GGG | - | 11234:3654-3673 | MS.gene041760:intron | 50.0% |
| ! | ATGGTGGAAGTTGAGCCGAT+AGG | + | 11234:1341-1360 | MS.gene041760:intergenic | 50.0% |
| !! | GTTGATGGTTGATGGATGCC+TGG | + | 11234:2313-2332 | MS.gene041760:intergenic | 50.0% |
| AAACCACGCGTCCCAATCTC+TGG | + | 11234:1735-1754 | MS.gene04176:intergenic | 55.0% | |
| AGCTGTGAGAATTCCCTGCG+AGG | - | 11234:3596-3615 | MS.gene041760:intron | 55.0% | |
| ATATCCCAGTTCGCAGGCCA+TGG | + | 11234:1938-1957 | MS.gene041760:intergenic | 55.0% | |
| CTCTCGACAAAGAGTGGCTC+CGG | + | 11234:3721-3740 | MS.gene041760:intergenic | 55.0% | |
| GGGACGCGTGGTTTATACAG+GGG | - | 11234:1741-1760 | MS.gene041760:intron | 55.0% | |
| GTGGGTACTTGGCAGCAAGA+TGG | - | 11234:3672-3691 | MS.gene041760:intron | 55.0% | |
| TCCCTCGGATCGTCTTCAAG+AGG | - | 11234:1214-1233 | MS.gene041760:intron | 55.0% | |
| ! | CAATGTGGGTGAGGCTTTGG+TGG | - | 11234:3653-3672 | MS.gene041760:intron | 55.0% |
| ! | CTAAGATCTGCATTGGCCGG+TGG | - | 11234:1493-1512 | MS.gene041760:intron | 55.0% |
| ! | GTGAGGCTTTGGTGGGTACT+TGG | - | 11234:3661-3680 | MS.gene041760:intron | 55.0% |
| !! | AGGAAGGCACTGGGGAAATG+AGG | + | 11234:2135-2154 | MS.gene041760:intergenic | 55.0% |
| CAGGGCACAAGAAAGGCCAC+CGG | + | 11234:1512-1531 | MS.gene041760:intergenic | 60.0% | |
| CCAGCAGGCATTTCGACGGA+TGG | + | 11234:1466-1485 | MS.gene041760:intergenic | 60.0% | |
| CCATCCGTCGAAATGCCTGC+TGG | - | 11234:1463-1482 | MS.gene041760:intron | 60.0% | |
| CGGAGCCACTCTTTGTCGAG+AGG | - | 11234:3719-3738 | MS.gene041760:intron | 60.0% | |
| GCAGGCATTTCGACGGATGG+TGG | + | 11234:1463-1482 | MS.gene041760:intergenic | 60.0% | |
| GTAGCCATGGCCTGCGAACT+GGG | - | 11234:1931-1950 | MS.gene041760:intron | 60.0% | |
| TGTAGCCATGGCCTGCGAAC+TGG | - | 11234:1930-1949 | MS.gene041760:intron | 60.0% | |
| CTGCCAGAGATTGGGACGCG+TGG | - | 11234:1729-1748 | MS.gene041760:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 11234 | gene | 554 | 3790 | 554 | ID=MS.gene041760 |
| 11234 | mRNA | 554 | 3790 | 554 | ID=MS.gene041760.t1;Parent=MS.gene041760 |
| 11234 | exon | 3787 | 3790 | 3787 | ID=MS.gene041760.t1.exon1;Parent=MS.gene041760.t1 |
| 11234 | CDS | 3787 | 3790 | 3787 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| 11234 | exon | 3101 | 3518 | 3101 | ID=MS.gene041760.t1.exon2;Parent=MS.gene041760.t1 |
| 11234 | CDS | 3101 | 3518 | 3101 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| 11234 | exon | 2777 | 2921 | 2777 | ID=MS.gene041760.t1.exon3;Parent=MS.gene041760.t1 |
| 11234 | CDS | 2777 | 2921 | 2777 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| 11234 | exon | 2548 | 2663 | 2548 | ID=MS.gene041760.t1.exon4;Parent=MS.gene041760.t1 |
| 11234 | CDS | 2548 | 2663 | 2548 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| 11234 | exon | 2331 | 2409 | 2331 | ID=MS.gene041760.t1.exon5;Parent=MS.gene041760.t1 |
| 11234 | CDS | 2331 | 2409 | 2331 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| 11234 | exon | 554 | 789 | 554 | ID=MS.gene041760.t1.exon6;Parent=MS.gene041760.t1 |
| 11234 | CDS | 554 | 789 | 554 | ID=cds.MS.gene041760.t1;Parent=MS.gene041760.t1 |
| Gene Sequence |
| Protein sequence |
