Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40011.t1 | XP_013468608.1 | 98 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.00E+00 | 1978.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40011.t1 | Q9HCG7 | 40.8 | 888 | 413 | 18 | 56 | 933 | 106 | 890 | 3.2e-176 | 620.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40011.t1 | A0A072VX24 | 98.0 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0e+00 | 1978.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060520 | MS.gene40011 | 0.804404 | 2.20E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene012798 | MS.gene40011 | PPI |
| MS.gene40011 | MS.gene95043 | PPI |
| MS.gene042041 | MS.gene40011 | PPI |
| MS.gene40011 | MS.gene43487 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40011.t1 | MTR_1g072720 | 97.951 | 976 | 20 | 0 | 1 | 976 | 7 | 982 | 0.0 | 2001 |
| MS.gene40011.t1 | MTR_1g072720 | 97.927 | 965 | 20 | 0 | 1 | 965 | 7 | 971 | 0.0 | 1981 |
| MS.gene40011.t1 | MTR_4g134760 | 52.174 | 920 | 380 | 15 | 31 | 937 | 31 | 903 | 0.0 | 931 |
| MS.gene40011.t1 | MTR_4g134760 | 52.941 | 765 | 308 | 11 | 184 | 937 | 1 | 724 | 0.0 | 780 |
| MS.gene40011.t1 | MTR_4g134760 | 51.714 | 671 | 273 | 10 | 278 | 937 | 3 | 633 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40011.t1 | AT3G24180 | 74.869 | 955 | 207 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1461 |
| MS.gene40011.t1 | AT3G24180 | 74.869 | 955 | 207 | 5 | 1 | 955 | 1 | 922 | 0.0 | 1461 |
| MS.gene40011.t1 | AT5G49900 | 51.917 | 913 | 389 | 9 | 30 | 934 | 23 | 893 | 0.0 | 934 |
| MS.gene40011.t1 | AT5G49900 | 51.917 | 913 | 389 | 9 | 30 | 934 | 23 | 893 | 0.0 | 934 |
| MS.gene40011.t1 | AT1G33700 | 49.454 | 916 | 415 | 11 | 30 | 937 | 13 | 888 | 0.0 | 876 |
| MS.gene40011.t1 | AT1G33700 | 49.454 | 916 | 415 | 11 | 30 | 937 | 13 | 888 | 0.0 | 876 |
| MS.gene40011.t1 | AT1G33700 | 49.454 | 916 | 415 | 11 | 30 | 937 | 13 | 888 | 0.0 | 876 |
| MS.gene40011.t1 | AT1G33700 | 48.692 | 879 | 403 | 11 | 30 | 900 | 13 | 851 | 0.0 | 824 |
| MS.gene40011.t1 | AT5G49900 | 52.174 | 667 | 271 | 7 | 278 | 934 | 3 | 631 | 0.0 | 664 |
| MS.gene40011.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 5.73e-137 | 434 |
| MS.gene40011.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 3.23e-136 | 432 |
| MS.gene40011.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 5.73e-137 | 434 |
| MS.gene40011.t1 | AT4G10060 | 47.752 | 467 | 228 | 8 | 22 | 481 | 8 | 465 | 3.23e-136 | 432 |
Find 240 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTGAAGTACAAATTT+TGG | 0.115897 | 1.4:-59532741 | None:intergenic |
| ACATGAGGCCACTGTCAATT+TGG | 0.167305 | 1.4:+59533910 | MS.gene40011:CDS |
| TGGGGAACTCGTAAGGTTTA+TGG | 0.186018 | 1.4:+59532627 | MS.gene40011:CDS |
| TGGGGCTGTCCCACATGATT+TGG | 0.240059 | 1.4:+59532647 | MS.gene40011:CDS |
| GGGGCTGTCCCACATGATTT+GGG | 0.240329 | 1.4:+59532648 | MS.gene40011:CDS |
| GATCGGGAAAATTTCTCTTC+TGG | 0.243513 | 1.4:+59530631 | MS.gene40011:CDS |
| GCAACAGGTGATTTGCAATT+TGG | 0.258666 | 1.4:+59532777 | MS.gene40011:CDS |
| GTGCTTACTGTGGTGGTCTT+TGG | 0.276640 | 1.4:+59532931 | MS.gene40011:CDS |
| TCTAAATTCTTTAAGAAGAT+TGG | 0.284924 | 1.4:-59524201 | None:intergenic |
| TTCAATGTGATGAAAGTTAA+AGG | 0.285157 | 1.4:+59533227 | MS.gene40011:CDS |
| TGGAAGGAGAGTAAAGTTTC+TGG | 0.290455 | 1.4:+59532593 | MS.gene40011:CDS |
| AGTTTCTGGCAGAGGGAAAC+TGG | 0.296329 | 1.4:+59532607 | MS.gene40011:CDS |
| CATGAGGCCACTGTCAATTT+GGG | 0.306263 | 1.4:+59533911 | MS.gene40011:CDS |
| CCACTTTAGCTTCAGTTATT+CGG | 0.312015 | 1.4:-59532209 | None:intergenic |
| CTTCTTCTCCAAGCTTGTTC+AGG | 0.312960 | 1.4:-59524164 | None:intergenic |
| TCCAGGTGATGAGGGCATGC+TGG | 0.316468 | 1.4:-59530656 | None:intergenic |
| TTACCGCCCAAGTAAATAAA+AGG | 0.316621 | 1.4:-59528130 | None:intergenic |
| GGGGAACTCGTAAGGTTTAT+GGG | 0.328245 | 1.4:+59532628 | MS.gene40011:CDS |
| TTATGTAATCCTCCTCTAAC+AGG | 0.337687 | 1.4:-59534014 | None:intergenic |
| TTGAAATTCCAGGTTCGATT+AGG | 0.338785 | 1.4:+59524441 | MS.gene40011:intron |
| AGAGATACATCCCATGAATA+TGG | 0.344504 | 1.4:+59532327 | MS.gene40011:CDS |
| GGCCCCTAAAATTAACTTCA+TGG | 0.344736 | 1.4:+59533974 | MS.gene40011:CDS |
| AAAAGGAATGTGGACTAAAA+TGG | 0.348084 | 1.4:+59530460 | MS.gene40011:CDS |
| TCATGGGGATGGAATCTAAA+TGG | 0.351315 | 1.4:+59527015 | MS.gene40011:CDS |
| GAACTCTACTTTCTTGTTGC+TGG | 0.357509 | 1.4:+59531968 | MS.gene40011:CDS |
| TAAACTAAGAATTACCATTC+TGG | 0.363223 | 1.4:-59531338 | None:intergenic |
| TTGTTGCTGGAGGAACAATT+TGG | 0.366760 | 1.4:+59531981 | MS.gene40011:CDS |
| CCTTTCACAAACTTCACTTT+CGG | 0.380322 | 1.4:-59530766 | None:intergenic |
| GGGGCCTCAAGTACTGCCTT+TGG | 0.382148 | 1.4:-59533957 | None:intergenic |
| CATGTATCATATGTTTGATC+AGG | 0.387198 | 1.4:-59532891 | None:intergenic |
| GATCTTGTGCAGAATTCTAT+TGG | 0.388602 | 1.4:+59528230 | MS.gene40011:intron |
| TATTCACGGTTCCATATTCA+TGG | 0.391907 | 1.4:-59532338 | None:intergenic |
| AGGGGTTCCACTTGGAGGGA+TGG | 0.398673 | 1.4:+59524714 | MS.gene40011:CDS |
| GTATGCAGTCTCGAGAGATA+TGG | 0.400049 | 1.4:+59533306 | MS.gene40011:CDS |
| CCAGGTGATGAGGGCATGCT+GGG | 0.407317 | 1.4:-59530655 | None:intergenic |
| TAGCAGGAAAGCTGATGATC+AGG | 0.407661 | 1.4:+59526984 | MS.gene40011:CDS |
| CCGAATAACTGAAGCTAAAG+TGG | 0.411606 | 1.4:+59532209 | MS.gene40011:CDS |
| AGCTTCTCTACGAGAGTGTT+GGG | 0.413362 | 1.4:-59534169 | None:intergenic |
| TGTAATTATGTGGTATGAAA+GGG | 0.414470 | 1.4:-59527217 | None:intergenic |
| TACGAATGTGGTCATATGTC+AGG | 0.415745 | 1.4:+59524466 | MS.gene40011:CDS |
| ATCCACCTATCTCCTGTTAG+AGG | 0.417590 | 1.4:+59534002 | MS.gene40011:CDS |
| CCCAGCATGCCCTCATCACC+TGG | 0.423292 | 1.4:+59530655 | MS.gene40011:CDS |
| AGCCAATTGATCGGCTTGAA+TGG | 0.427786 | 1.4:-59533120 | None:intergenic |
| TCCGTTTCTGAGAGTATTCA+CGG | 0.428112 | 1.4:-59532352 | None:intergenic |
| GAACCCAAAATTTGTACTTC+AGG | 0.429676 | 1.4:+59532737 | MS.gene40011:CDS |
| GGGGTTCCACTTGGAGGGAT+GGG | 0.431136 | 1.4:+59524715 | MS.gene40011:CDS |
| ATCCATTCAAGCCGATCAAT+TGG | 0.432522 | 1.4:+59533118 | MS.gene40011:CDS |
| ATGGCAGGATCCTATTCTTA+AGG | 0.433320 | 1.4:+59531304 | MS.gene40011:CDS |
| AGACAATGGCAAATCATTCC+TGG | 0.434302 | 1.4:+59524962 | MS.gene40011:CDS |
| GGAGGATTACATAAAGAAAC+AGG | 0.434463 | 1.4:+59534023 | MS.gene40011:CDS |
| AGAGCTGAAGATGGCGTCTC+CGG | 0.438417 | 1.4:+59528396 | MS.gene40011:intron |
| TGAAAGGCAGCACTTTCAAC+AGG | 0.441957 | 1.4:+59530782 | MS.gene40011:CDS |
| ATGCTTTGTTTCCAAGAGCT+TGG | 0.444285 | 1.4:+59527055 | MS.gene40011:CDS |
| TGCTGTTTCAGCTTCCGCAT+GGG | 0.448130 | 1.4:+59530693 | MS.gene40011:CDS |
| CTATGATTCTACTGCTCCTA+GGG | 0.448143 | 1.4:+59532275 | MS.gene40011:CDS |
| CCTATGATTCTACTGCTCCT+AGG | 0.449205 | 1.4:+59532274 | MS.gene40011:CDS |
| TCTCGAGTGAAAGGATCTAT+AGG | 0.449861 | 1.4:-59524667 | None:intergenic |
| AGCATATCAAGAGGATTTAG+AGG | 0.452153 | 1.4:+59524932 | MS.gene40011:CDS |
| CAATGGTATACAGCATCCTC+AGG | 0.452922 | 1.4:+59533146 | MS.gene40011:CDS |
| CCCTACACCTTCATGCTGAC+CGG | 0.456220 | 1.4:-59526093 | None:intergenic |
| CTTCTCCAAGCTTGTTCAGG+AGG | 0.456855 | 1.4:-59524161 | None:intergenic |
| AAATGAGACTTACAGAGAAC+TGG | 0.459619 | 1.4:-59525015 | None:intergenic |
| CGAAGTAGCGTAACAGCAAA+AGG | 0.462013 | 1.4:+59530443 | MS.gene40011:CDS |
| TCCATTGCAGCTCGGACAGC+AGG | 0.462620 | 1.4:-59532813 | None:intergenic |
| CTGCTGTTTCAGCTTCCGCA+TGG | 0.463351 | 1.4:+59530692 | MS.gene40011:CDS |
| TGGTGGAAGGTTCTTGTACT+TGG | 0.463613 | 1.4:+59532440 | MS.gene40011:CDS |
| TGCTGTTACGCTACTTCGGT+CGG | 0.464082 | 1.4:-59530438 | None:intergenic |
| TCATAAACAGTCCAAGCTCT+TGG | 0.465016 | 1.4:-59527066 | None:intergenic |
| GCTGCAACAATGATACTTGC+AGG | 0.465363 | 1.4:+59533350 | MS.gene40011:CDS |
| GCCTGCTGTCCGAGCTGCAA+TGG | 0.466643 | 1.4:+59532812 | MS.gene40011:CDS |
| TGAGAGAGCTGCAGTGCACC+TGG | 0.469761 | 1.4:+59531070 | MS.gene40011:CDS |
| TAAGGATGGGCAATTTGATC+GGG | 0.470665 | 1.4:+59530615 | MS.gene40011:intron |
| GGGTTCCACTTGGAGGGATG+GGG | 0.471807 | 1.4:+59524716 | MS.gene40011:CDS |
| CTGTAATTATGTGGTATGAA+AGG | 0.472855 | 1.4:-59527218 | None:intergenic |
| CCAGAGGCATTTACAATTGA+CGG | 0.473164 | 1.4:+59533867 | MS.gene40011:CDS |
| TTCATTGTAGAAAGAATTCG+TGG | 0.473789 | 1.4:+59523552 | MS.gene40011:CDS |
| CTGCTCCTCCTGAACAAGCT+TGG | 0.474967 | 1.4:+59524156 | MS.gene40011:CDS |
| CAAGCTGTCCTGTGTGAAGA+TGG | 0.475037 | 1.4:+59532573 | MS.gene40011:CDS |
| ATTCAAGCCGATCAATTGGC+TGG | 0.479609 | 1.4:+59533122 | MS.gene40011:CDS |
| CTGCTTTCTCTGTAATTATG+TGG | 0.483079 | 1.4:-59527227 | None:intergenic |
| AAAGTTAAAGGCGGCAGAAT+GGG | 0.484438 | 1.4:+59533239 | MS.gene40011:CDS |
| TAAGCATTCATTTCATGCCA+TGG | 0.484899 | 1.4:-59532681 | None:intergenic |
| ACAGTGGCCTCATGTATATG+AGG | 0.485361 | 1.4:-59533902 | None:intergenic |
| CCTAGGAGCAGTAGAATCAT+AGG | 0.487066 | 1.4:-59532274 | None:intergenic |
| TATGCAGTCTCGAGAGATAT+GGG | 0.488836 | 1.4:+59533307 | MS.gene40011:CDS |
| GGTGGGAACTCTCACTTGTC+AGG | 0.489914 | 1.4:+59528251 | MS.gene40011:CDS |
| TTCATTCACAGAGCTGAAGA+TGG | 0.492280 | 1.4:+59528387 | MS.gene40011:intron |
| ATCTCTGTCACCTAGTTGAA+TGG | 0.494181 | 1.4:-59532985 | None:intergenic |
| TCTCAAGGGGTTCCACTTGG+AGG | 0.494410 | 1.4:+59524709 | MS.gene40011:CDS |
| TTAAGGATGGGCAATTTGAT+CGG | 0.495077 | 1.4:+59530614 | MS.gene40011:intron |
| CCGAGCTGCAATGGAGTACA+TGG | 0.495164 | 1.4:+59532821 | MS.gene40011:CDS |
| AACATAACATACCAACTGTA+AGG | 0.499287 | 1.4:-59523603 | None:intergenic |
| TCTTCAAGCTGCAGCTGCAA+TGG | 0.499649 | 1.4:+59532962 | MS.gene40011:CDS |
| GGGAAGAAGAGATTGCAAAA+TGG | 0.500460 | 1.4:+59531285 | MS.gene40011:CDS |
| CCGTCAATTGTAAATGCCTC+TGG | 0.500631 | 1.4:-59533867 | None:intergenic |
| CAGCTTCTCTACGAGAGTGT+TGG | 0.501196 | 1.4:-59534170 | None:intergenic |
| AGCTTCTCATCCTTAAGAAT+AGG | 0.503401 | 1.4:-59531314 | None:intergenic |
| ATGATCAGGGTATATCATCA+TGG | 0.507713 | 1.4:+59526998 | MS.gene40011:CDS |
| GGCAGAATGGGTGCTGTGAA+TGG | 0.507901 | 1.4:+59533251 | MS.gene40011:CDS |
| TTGCAACTTTCTCGAGTGAA+AGG | 0.510427 | 1.4:-59524676 | None:intergenic |
| GTTTCATCCACCTTACCGTT+GGG | 0.511276 | 1.4:-59533281 | None:intergenic |
| GAGAACTGGTTGGCCATGAC+AGG | 0.513003 | 1.4:-59525001 | None:intergenic |
| ATCCTCCTCTAACAGGAGAT+AGG | 0.513477 | 1.4:-59534007 | None:intergenic |
| GATGGTCTTATTGAGAATGA+TGG | 0.516775 | 1.4:+59532864 | MS.gene40011:CDS |
| CTGATCAAACATATGATACA+TGG | 0.520231 | 1.4:+59532892 | MS.gene40011:CDS |
| GGCTGGTCAGAAGAAGGATA+CGG | 0.520711 | 1.4:+59533419 | MS.gene40011:CDS |
| CTCTACTTTCTTGTTGCTGG+AGG | 0.522845 | 1.4:+59531971 | MS.gene40011:CDS |
| GTGTCAATGCATCATGAGCC+AGG | 0.526121 | 1.4:-59531088 | None:intergenic |
| GAAAGTTAAAGGCGGCAGAA+TGG | 0.527675 | 1.4:+59533238 | MS.gene40011:CDS |
| ACCGTGAATACTCTCAGAAA+CGG | 0.528941 | 1.4:+59532351 | MS.gene40011:CDS |
| TGCAATTTGGTGTCGATGTG+TGG | 0.529941 | 1.4:+59532790 | MS.gene40011:CDS |
| TCAAGATCAAAAGTTCTCTC+CGG | 0.530516 | 1.4:+59533192 | MS.gene40011:CDS |
| AAAATGGTGGTCAAGGGCCG+GGG | 0.531144 | 1.4:+59534196 | MS.gene40011:CDS |
| GGTTTCATCCACCTTACCGT+TGG | 0.531435 | 1.4:-59533282 | None:intergenic |
| CAGAGGCATTTACAATTGAC+GGG | 0.533907 | 1.4:+59533868 | MS.gene40011:CDS |
| GCATCTCAAGGGGTTCCACT+TGG | 0.534772 | 1.4:+59524706 | MS.gene40011:CDS |
| CTGTTGCATTTAGTCTTGCA+TGG | 0.535873 | 1.4:+59530737 | MS.gene40011:CDS |
| GTCAGGGAAGAGGCTTCTCA+TGG | 0.537322 | 1.4:+59524483 | MS.gene40011:CDS |
| CTAGCAGGCTGGTCAGAAGA+AGG | 0.537501 | 1.4:+59533413 | MS.gene40011:CDS |
| TGATCAGGGTATATCATCAT+GGG | 0.539292 | 1.4:+59526999 | MS.gene40011:CDS |
| ATTCTTTAAGAAGATTGGCA+TGG | 0.539896 | 1.4:-59524196 | None:intergenic |
| GTTTCTGGCAGAGGGAAACT+GGG | 0.542995 | 1.4:+59532608 | MS.gene40011:CDS |
| GCTGAGGGTATATTTCTAGC+AGG | 0.543807 | 1.4:+59533398 | MS.gene40011:CDS |
| TTACAATTGACGGGCACTAT+CGG | 0.545338 | 1.4:+59533877 | MS.gene40011:CDS |
| GAGAGTAAAGTTTCTGGCAG+AGG | 0.545432 | 1.4:+59532599 | MS.gene40011:CDS |
| GGAAGGTTCTTGTACTTGGA+AGG | 0.545489 | 1.4:+59532444 | MS.gene40011:CDS |
| AACAATGATACTTGCAGGAA+TGG | 0.546051 | 1.4:+59533355 | MS.gene40011:CDS |
| TGCAAGCCATCTGCATCTCA+AGG | 0.547185 | 1.4:+59524694 | MS.gene40011:CDS |
| GGGAAGAGGCTTCTCATGGA+AGG | 0.551137 | 1.4:+59524487 | MS.gene40011:CDS |
| AGAAGAGATTGCAAAATGGC+AGG | 0.552563 | 1.4:+59531289 | MS.gene40011:CDS |
| TTGGCTCCCGGTCAGCATGA+AGG | 0.552768 | 1.4:+59526086 | MS.gene40011:CDS |
| AGGGTATATCATCATGGGGA+TGG | 0.552996 | 1.4:+59527004 | MS.gene40011:CDS |
| AGAGCTTGGACTGTTTATGA+TGG | 0.553201 | 1.4:+59527069 | MS.gene40011:CDS |
| GGGAAACTGGGGAACTCGTA+AGG | 0.554907 | 1.4:+59532620 | MS.gene40011:CDS |
| CTCAAGGGGTTCCACTTGGA+GGG | 0.555712 | 1.4:+59524710 | MS.gene40011:CDS |
| TAGTGTCTCTCCAGGTGATG+AGG | 0.558574 | 1.4:-59530665 | None:intergenic |
| CCGATCAATTGGCTGGGCAA+TGG | 0.559132 | 1.4:+59533129 | MS.gene40011:CDS |
| ACATTCATGATACTAGTAAG+TGG | 0.559226 | 1.4:+59532706 | MS.gene40011:CDS |
| AGGGTATATTTCTAGCAGGC+TGG | 0.559806 | 1.4:+59533402 | MS.gene40011:CDS |
| GCTGGAGGAACAATTTGGAT+AGG | 0.560165 | 1.4:+59531986 | MS.gene40011:CDS |
| CAGTCTCGAGAGATATGGGC+AGG | 0.560172 | 1.4:+59533311 | MS.gene40011:CDS |
| TTGTGCAGAATTCTATTGGT+GGG | 0.560692 | 1.4:+59528234 | MS.gene40011:intron |
| TATCTCTCGAGACTGCATAC+AGG | 0.561033 | 1.4:-59533303 | None:intergenic |
| CCTACACCTTCATGCTGACC+GGG | 0.562407 | 1.4:-59526092 | None:intergenic |
| TTCAAGCCGATCAATTGGCT+GGG | 0.565771 | 1.4:+59533123 | MS.gene40011:CDS |
| GTTCTTGTACTTGGAAGGTG+TGG | 0.567369 | 1.4:+59532449 | MS.gene40011:CDS |
| CCGGTCAGCATGAAGGTGTA+GGG | 0.569505 | 1.4:+59526093 | MS.gene40011:CDS |
| CCCGGTCAGCATGAAGGTGT+AGG | 0.569661 | 1.4:+59526092 | MS.gene40011:CDS |
| TTATTGATATACTCTTCGGT+AGG | 0.572408 | 1.4:-59523575 | None:intergenic |
| AGTGTCTCTCCAGGTGATGA+GGG | 0.572454 | 1.4:-59530664 | None:intergenic |
| CCATGTACTCCATTGCAGCT+CGG | 0.573822 | 1.4:-59532821 | None:intergenic |
| GCAGCACATAGTGTCTCTCC+AGG | 0.574981 | 1.4:-59530673 | None:intergenic |
| ATGTGAACCATCACCTGTCA+TGG | 0.576503 | 1.4:+59524988 | MS.gene40011:CDS |
| GTGGTCATATGTCAGGGAAG+AGG | 0.576804 | 1.4:+59524473 | MS.gene40011:CDS |
| TGGCATGCATCCCAACGGTA+AGG | 0.577901 | 1.4:+59533271 | MS.gene40011:CDS |
| CCATTGCCCAGCCAATTGAT+CGG | 0.578065 | 1.4:-59533129 | None:intergenic |
| ATTCACGGTTCCATATTCAT+GGG | 0.579939 | 1.4:-59532337 | None:intergenic |
| GCTGCAATGGCCATTCAACT+AGG | 0.581074 | 1.4:+59532975 | MS.gene40011:CDS |
| CCGAAAGTGAAGTTTGTGAA+AGG | 0.581461 | 1.4:+59530766 | MS.gene40011:CDS |
| CAATAAAACCACCTTACAGT+TGG | 0.581904 | 1.4:+59523592 | MS.gene40011:CDS |
| GCAAGCCATCTGCATCTCAA+GGG | 0.582594 | 1.4:+59524695 | MS.gene40011:CDS |
| GATCAAAAGTTCTCTCCGGA+AGG | 0.582612 | 1.4:+59533196 | MS.gene40011:CDS |
| TATGAACAAAAGCTGTGGAA+TGG | 0.583308 | 1.4:+59533053 | MS.gene40011:CDS |
| CATGCATCCCAACGGTAAGG+TGG | 0.585856 | 1.4:+59533274 | MS.gene40011:CDS |
| AGAGTAAAGTTTCTGGCAGA+GGG | 0.586626 | 1.4:+59532600 | MS.gene40011:CDS |
| CGGTCGGACAGCCCAAAACA+TGG | 0.589504 | 1.4:-59530422 | None:intergenic |
| ATGTATCATATGTTTGATCA+GGG | 0.589770 | 1.4:-59532890 | None:intergenic |
| TCCGCATGGGTGGAACCCCA+TGG | 0.592731 | 1.4:+59530706 | MS.gene40011:CDS |
| TGTTTCAGCTTCCGCATGGG+TGG | 0.593550 | 1.4:+59530696 | MS.gene40011:CDS |
| GAGGCCTTCACAACTGCTGA+GGG | 0.595335 | 1.4:+59533383 | MS.gene40011:CDS |
| CGAAACAGATTATACACGGT+GGG | 0.595689 | 1.4:+59531265 | MS.gene40011:intron |
| CATGATGATGATAATGATGA+TGG | 0.598644 | 1.4:+59532420 | MS.gene40011:CDS |
| GATGATGATAATGATGATGG+TGG | 0.599702 | 1.4:+59532423 | MS.gene40011:CDS |
| TATACCCTCAGCAGTTGTGA+AGG | 0.600362 | 1.4:-59533387 | None:intergenic |
| AAGCATGGTATGTTGAGTGC+TGG | 0.600765 | 1.4:-59527038 | None:intergenic |
| GCTGGTCAGAAGAAGGATAC+GGG | 0.601383 | 1.4:+59533420 | MS.gene40011:CDS |
| ACTTGCAGGAATGGAAGAAG+AGG | 0.601561 | 1.4:+59533364 | MS.gene40011:CDS |
| CACCTATCTCCTGTTAGAGG+AGG | 0.602664 | 1.4:+59534005 | MS.gene40011:CDS |
| ATATGGGCAGGTGTGACCTA+CGG | 0.602987 | 1.4:+59533323 | MS.gene40011:CDS |
| GCGTAACAGCAAAAGGAATG+TGG | 0.603596 | 1.4:+59530450 | MS.gene40011:CDS |
| CTCTCCTTCCATCTTCACAC+AGG | 0.603646 | 1.4:-59532581 | None:intergenic |
| ATGCAAAAGGAAGTTTCTGA+AGG | 0.605176 | 1.4:+59533019 | MS.gene40011:CDS |
| ATTTGGGGACACATGATCCA+TGG | 0.607898 | 1.4:+59532664 | MS.gene40011:CDS |
| CTCCTCTAACAGGAGATAGG+TGG | 0.608598 | 1.4:-59534004 | None:intergenic |
| GTAATTATGTGGTATGAAAG+GGG | 0.610838 | 1.4:-59527216 | None:intergenic |
| GGGTTAGTAACAGTGTGAAG+AGG | 0.611676 | 1.4:-59534149 | None:intergenic |
| TATGCCAAAGGCAGTACTTG+AGG | 0.611801 | 1.4:+59533953 | MS.gene40011:CDS |
| AGCAGGAAAGCTGATGATCA+GGG | 0.612348 | 1.4:+59526985 | MS.gene40011:CDS |
| AGAGGCCTTCACAACTGCTG+AGG | 0.613758 | 1.4:+59533382 | MS.gene40011:CDS |
| GGTGTGAGTGCTTACTGTGG+TGG | 0.615502 | 1.4:+59532924 | MS.gene40011:CDS |
| TCCTAGGGGACATAGTCACT+TGG | 0.616516 | 1.4:+59532290 | MS.gene40011:CDS |
| TCCAAGTGACTATGTCCCCT+AGG | 0.619743 | 1.4:-59532291 | None:intergenic |
| GATTTGGAAAGAATGGTTAG+CGG | 0.622055 | 1.4:+59523521 | None:intergenic |
| ACGAATGTGGTCATATGTCA+GGG | 0.622718 | 1.4:+59524467 | MS.gene40011:CDS |
| CACAGTAAGCACTCACACCA+TGG | 0.625608 | 1.4:-59532920 | None:intergenic |
| GGAAGAGGCTTCTCATGGAA+GGG | 0.626324 | 1.4:+59524488 | MS.gene40011:CDS |
| TTCGATTAGGTATACGAATG+TGG | 0.629570 | 1.4:+59524454 | MS.gene40011:CDS |
| TGGTTGGCCATGACAGGTGA+TGG | 0.630994 | 1.4:-59524995 | None:intergenic |
| AGGATGAGAAGCTACCAGAA+TGG | 0.634200 | 1.4:+59531324 | MS.gene40011:CDS |
| AATGTGGACTAAAATGGTGA+AGG | 0.634442 | 1.4:+59530466 | MS.gene40011:CDS |
| GGGCTGTCCCACATGATTTG+GGG | 0.634911 | 1.4:+59532649 | MS.gene40011:CDS |
| CTGTCCTGTGTGAAGATGGA+AGG | 0.636012 | 1.4:+59532577 | MS.gene40011:CDS |
| TATGATACATGGACTGTCCA+TGG | 0.636500 | 1.4:+59532903 | MS.gene40011:CDS |
| CAAGCCATCTGCATCTCAAG+GGG | 0.636690 | 1.4:+59524696 | MS.gene40011:CDS |
| TGTATATTTAATTCAATACG+AGG | 0.637943 | 1.4:-59532537 | None:intergenic |
| ATGAGGCCACTGTCAATTTG+GGG | 0.638419 | 1.4:+59533912 | MS.gene40011:CDS |
| GGAACCCCTTGAGATGCAGA+TGG | 0.638569 | 1.4:-59524700 | None:intergenic |
| CAGTGGCCTCATGTATATGA+GGG | 0.643672 | 1.4:-59533901 | None:intergenic |
| TCATACCCCATCCCTCCAAG+TGG | 0.648533 | 1.4:-59524721 | None:intergenic |
| CTTGTGCAGAATTCTATTGG+TGG | 0.648579 | 1.4:+59528233 | MS.gene40011:intron |
| TCATGTGTCCCCAAATCATG+TGG | 0.650108 | 1.4:-59532657 | None:intergenic |
| ATATGCATTAACTATGCCAA+AGG | 0.651288 | 1.4:+59533941 | MS.gene40011:CDS |
| AAGCTCTTGGAAACAAAGCA+TGG | 0.652854 | 1.4:-59527053 | None:intergenic |
| CATTGTTGCAGCAACACCGT+AGG | 0.654279 | 1.4:-59533339 | None:intergenic |
| ATGATAATGATGATGGTGGA+AGG | 0.654300 | 1.4:+59532427 | MS.gene40011:CDS |
| CAATTCGATAGAGATGCTGA+TGG | 0.661858 | 1.4:+59532846 | MS.gene40011:CDS |
| ATCGGTCCCTCATATACATG+AGG | 0.664121 | 1.4:+59533895 | MS.gene40011:CDS |
| AGGAGTGGCAGCATATCAAG+AGG | 0.664942 | 1.4:+59524923 | MS.gene40011:intron |
| GATTCGAAACAGATTATACA+CGG | 0.665400 | 1.4:+59531261 | MS.gene40011:intron |
| TACAAGTTACAACTGAACCC+CGG | 0.668319 | 1.4:-59534213 | None:intergenic |
| GGGAACTCGTAAGGTTTATG+GGG | 0.669077 | 1.4:+59532629 | MS.gene40011:CDS |
| TCCATGGGGTTCCACCCATG+CGG | 0.669209 | 1.4:-59530707 | None:intergenic |
| CAGTATATGAACAAAAGCTG+TGG | 0.672417 | 1.4:+59533048 | MS.gene40011:CDS |
| TTAGAGGTGAATTCAGACAA+TGG | 0.673231 | 1.4:+59524948 | MS.gene40011:CDS |
| AATGGTATACAGCATCCTCA+GGG | 0.677357 | 1.4:+59533147 | MS.gene40011:CDS |
| CATGTGTCCCCAAATCATGT+GGG | 0.677655 | 1.4:-59532656 | None:intergenic |
| GATCAGGGTATATCATCATG+GGG | 0.682964 | 1.4:+59527000 | MS.gene40011:CDS |
| GAGACTTACAGAGAACTGGT+TGG | 0.687892 | 1.4:-59525011 | None:intergenic |
| GGTGATGGTTCACATAGACC+AGG | 0.689207 | 1.4:-59524980 | None:intergenic |
| ATAACATACCAACTGTAAGG+TGG | 0.689223 | 1.4:-59523600 | None:intergenic |
| TGCATGCCCCAAATTGACAG+TGG | 0.696126 | 1.4:-59533918 | None:intergenic |
| GTGAATGGCATGCATCCCAA+CGG | 0.707804 | 1.4:+59533266 | MS.gene40011:CDS |
| CATGGTGTGAGTGCTTACTG+TGG | 0.707900 | 1.4:+59532921 | MS.gene40011:CDS |
| CTTGTGATATAGAAGTACGC+CGG | 0.716435 | 1.4:-59528415 | None:intergenic |
| AATGTGATGAAAGTTAAAGG+CGG | 0.717612 | 1.4:+59533230 | MS.gene40011:CDS |
| TTTCTGGCAGAGGGAAACTG+GGG | 0.722226 | 1.4:+59532609 | MS.gene40011:CDS |
| TCGAAACAGATTATACACGG+TGG | 0.737907 | 1.4:+59531264 | MS.gene40011:intron |
| TATGATTCTACTGCTCCTAG+GGG | 0.747175 | 1.4:+59532276 | MS.gene40011:CDS |
| ATACTGGTTTCAGACTCCAG+AGG | 0.761858 | 1.4:+59533851 | MS.gene40011:CDS |
| AAGGTGTGGAATATGTCATG+TGG | 0.762463 | 1.4:+59532463 | MS.gene40011:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59523533 | 59534236 | 59523533 | ID=MS.gene40011 |
| chr1.4 | mRNA | 59523533 | 59534236 | 59523533 | ID=MS.gene40011.t1;Parent=MS.gene40011 |
| chr1.4 | exon | 59523533 | 59523613 | 59523533 | ID=MS.gene40011.t1.exon1;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59523533 | 59523613 | 59523533 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59524140 | 59524250 | 59524140 | ID=MS.gene40011.t1.exon2;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59524140 | 59524250 | 59524140 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59524453 | 59524509 | 59524453 | ID=MS.gene40011.t1.exon3;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59524453 | 59524509 | 59524453 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59524661 | 59524737 | 59524661 | ID=MS.gene40011.t1.exon4;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59524661 | 59524737 | 59524661 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59524925 | 59525024 | 59524925 | ID=MS.gene40011.t1.exon5;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59524925 | 59525024 | 59524925 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59526041 | 59526114 | 59526041 | ID=MS.gene40011.t1.exon6;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59526041 | 59526114 | 59526041 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59526981 | 59527090 | 59526981 | ID=MS.gene40011.t1.exon7;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59526981 | 59527090 | 59526981 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59527174 | 59527277 | 59527174 | ID=MS.gene40011.t1.exon8;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59527174 | 59527277 | 59527174 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59528095 | 59528148 | 59528095 | ID=MS.gene40011.t1.exon9;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59528095 | 59528148 | 59528095 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59528242 | 59528297 | 59528242 | ID=MS.gene40011.t1.exon10;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59528242 | 59528297 | 59528242 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59528398 | 59528436 | 59528398 | ID=MS.gene40011.t1.exon11;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59528398 | 59528436 | 59528398 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59530346 | 59530487 | 59530346 | ID=MS.gene40011.t1.exon12;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59530346 | 59530487 | 59530346 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59530619 | 59530803 | 59530619 | ID=MS.gene40011.t1.exon13;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59530619 | 59530803 | 59530619 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59531043 | 59531110 | 59531043 | ID=MS.gene40011.t1.exon14;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59531043 | 59531110 | 59531043 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59531273 | 59531345 | 59531273 | ID=MS.gene40011.t1.exon15;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59531273 | 59531345 | 59531273 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59531946 | 59532007 | 59531946 | ID=MS.gene40011.t1.exon16;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59531946 | 59532007 | 59531946 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59532136 | 59533441 | 59532136 | ID=MS.gene40011.t1.exon17;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59532136 | 59533441 | 59532136 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59533851 | 59534044 | 59533851 | ID=MS.gene40011.t1.exon18;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59533851 | 59534044 | 59533851 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| chr1.4 | exon | 59534145 | 59534236 | 59534145 | ID=MS.gene40011.t1.exon19;Parent=MS.gene40011.t1 |
| chr1.4 | CDS | 59534145 | 59534236 | 59534145 | ID=cds.MS.gene40011.t1;Parent=MS.gene40011.t1 |
| Gene Sequence |
| Protein sequence |
