Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32077.t1 | XP_013468608.1 | 97.7 | 976 | 22 | 0 | 1 | 976 | 7 | 982 | 0.00E+00 | 1976.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32077.t1 | Q9HCG7 | 40.9 | 888 | 412 | 17 | 56 | 933 | 106 | 890 | 1.4e-176 | 621.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32077.t1 | A0A072VX24 | 97.7 | 976 | 22 | 0 | 1 | 976 | 7 | 982 | 0.0e+00 | 1976.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene95043 | MS.gene32077 | PPI |
| MS.gene43487 | MS.gene32077 | PPI |
| MS.gene012798 | MS.gene32077 | PPI |
| MS.gene042041 | MS.gene32077 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32077.t1 | MTR_1g072720 | 97.746 | 976 | 22 | 0 | 1 | 976 | 7 | 982 | 0.0 | 2000 |
| MS.gene32077.t1 | MTR_1g072720 | 97.720 | 965 | 22 | 0 | 1 | 965 | 7 | 971 | 0.0 | 1979 |
| MS.gene32077.t1 | MTR_4g134760 | 51.957 | 920 | 382 | 14 | 31 | 937 | 31 | 903 | 0.0 | 929 |
| MS.gene32077.t1 | MTR_4g134760 | 52.810 | 765 | 309 | 10 | 184 | 937 | 1 | 724 | 0.0 | 780 |
| MS.gene32077.t1 | MTR_4g134760 | 51.714 | 671 | 273 | 10 | 278 | 937 | 3 | 633 | 0.0 | 657 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32077.t1 | AT3G24180 | 74.555 | 955 | 210 | 4 | 1 | 955 | 1 | 922 | 0.0 | 1460 |
| MS.gene32077.t1 | AT3G24180 | 74.555 | 955 | 210 | 4 | 1 | 955 | 1 | 922 | 0.0 | 1460 |
| MS.gene32077.t1 | AT5G49900 | 52.026 | 913 | 388 | 9 | 30 | 934 | 23 | 893 | 0.0 | 940 |
| MS.gene32077.t1 | AT5G49900 | 52.026 | 913 | 388 | 9 | 30 | 934 | 23 | 893 | 0.0 | 940 |
| MS.gene32077.t1 | AT1G33700 | 49.563 | 916 | 414 | 11 | 30 | 937 | 13 | 888 | 0.0 | 877 |
| MS.gene32077.t1 | AT1G33700 | 49.563 | 916 | 414 | 11 | 30 | 937 | 13 | 888 | 0.0 | 877 |
| MS.gene32077.t1 | AT1G33700 | 49.563 | 916 | 414 | 11 | 30 | 937 | 13 | 888 | 0.0 | 877 |
| MS.gene32077.t1 | AT1G33700 | 48.805 | 879 | 402 | 11 | 30 | 900 | 13 | 851 | 0.0 | 825 |
| MS.gene32077.t1 | AT5G49900 | 52.324 | 667 | 270 | 7 | 278 | 934 | 3 | 631 | 0.0 | 670 |
| MS.gene32077.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.46e-137 | 435 |
| MS.gene32077.t1 | AT4G10060 | 49.327 | 446 | 215 | 7 | 22 | 465 | 8 | 444 | 3.13e-136 | 432 |
| MS.gene32077.t1 | AT4G10060 | 54.197 | 417 | 177 | 3 | 559 | 975 | 484 | 886 | 3.46e-137 | 435 |
| MS.gene32077.t1 | AT4G10060 | 49.327 | 446 | 215 | 7 | 22 | 465 | 8 | 444 | 3.13e-136 | 432 |
Find 237 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACACCTGAAGTACAAATTT+TGG | 0.115897 | 1.2:-55514077 | None:intergenic |
| TGGGGAACTCGTAAGGTTTA+TGG | 0.186018 | 1.2:+55513963 | MS.gene32077:CDS |
| TGGGGCTGTCCCACATGATT+TGG | 0.240059 | 1.2:+55513983 | MS.gene32077:CDS |
| GGGGCTGTCCCACATGATTT+GGG | 0.240329 | 1.2:+55513984 | MS.gene32077:CDS |
| GATCGGGAAAATTTCTCTTC+TGG | 0.243513 | 1.2:+55511866 | MS.gene32077:CDS |
| ATATGAGGCCACTGTCAATT+TGG | 0.255376 | 1.2:+55515248 | MS.gene32077:CDS |
| GCAACAGGTGATTTGCAATT+TGG | 0.258666 | 1.2:+55514113 | MS.gene32077:CDS |
| GTGCTTACTGTGGTGGTCTT+TGG | 0.276640 | 1.2:+55514267 | MS.gene32077:CDS |
| TCTAAATTCTTTAAGAAGAT+TGG | 0.284924 | 1.2:-55505497 | None:intergenic |
| TTCAATGTGATGAAAGTTAA+AGG | 0.285157 | 1.2:+55514563 | MS.gene32077:CDS |
| TGGAAGGAGAGTAAAGTTTC+TGG | 0.290455 | 1.2:+55513929 | MS.gene32077:CDS |
| AGTTTCTGGCAGAGGGAAAC+TGG | 0.296329 | 1.2:+55513943 | MS.gene32077:CDS |
| AGAGATATATCCCATGAAAA+TGG | 0.299499 | 1.2:+55513663 | MS.gene32077:CDS |
| CCACTTTAGCTTCAGTTATT+CGG | 0.312015 | 1.2:-55513545 | None:intergenic |
| CTTCTTCTCCAAGCTTGTTC+AGG | 0.312960 | 1.2:-55505460 | None:intergenic |
| TCCAGGTGATGAGGGCATGC+TGG | 0.316468 | 1.2:-55511891 | None:intergenic |
| TTACCGCCCAAGTAAATAAA+AGG | 0.316621 | 1.2:-55509412 | None:intergenic |
| TATGAGGCCACTGTCAATTT+GGG | 0.322102 | 1.2:+55515249 | MS.gene32077:CDS |
| GGGGAACTCGTAAGGTTTAT+GGG | 0.328245 | 1.2:+55513964 | MS.gene32077:CDS |
| GGCAGAATGGGTGCTGTAAA+TGG | 0.328598 | 1.2:+55514587 | MS.gene32077:CDS |
| TTATGTAATCCTCCTCTAAC+AGG | 0.337687 | 1.2:-55515352 | None:intergenic |
| TTGAAATTCCAGGTTCGATT+AGG | 0.338785 | 1.2:+55505715 | MS.gene32077:intron |
| GGCCCCTAAAATTAACTTCA+TGG | 0.344736 | 1.2:+55515312 | MS.gene32077:CDS |
| AAAAGGAATGTGGACTAAAA+TGG | 0.348084 | 1.2:+55511695 | MS.gene32077:CDS |
| TCATGGGGATGGAATCTAAA+TGG | 0.351315 | 1.2:+55508289 | MS.gene32077:CDS |
| TAACCCAAAATTTGTACTTC+AGG | 0.352766 | 1.2:+55514073 | MS.gene32077:CDS |
| GAACTCTACTTTCTTGTTGC+TGG | 0.357509 | 1.2:+55513304 | MS.gene32077:CDS |
| TAAACTAAGAATTACCATTC+TGG | 0.363223 | 1.2:-55512664 | None:intergenic |
| TACGCATGTGGTCATATGTT+AGG | 0.366133 | 1.2:+55505740 | MS.gene32077:CDS |
| TTGTTGCTGGAGGAACAATT+TGG | 0.366760 | 1.2:+55513317 | MS.gene32077:CDS |
| CCTTTCACAAACTTCACTTT+CGG | 0.380322 | 1.2:-55512001 | None:intergenic |
| GGGGCCTCAAGTACTGCCTT+TGG | 0.382148 | 1.2:-55515295 | None:intergenic |
| CATGTATCATATGTTTGATC+AGG | 0.387198 | 1.2:-55514227 | None:intergenic |
| GATCTTGTGCAGAATTCTAT+TGG | 0.388602 | 1.2:+55509512 | MS.gene32077:intron |
| AGGGGTTCCACTTGGAGGGA+TGG | 0.398673 | 1.2:+55505986 | MS.gene32077:CDS |
| GTATGCAGTCTCGAGAGATA+TGG | 0.400049 | 1.2:+55514642 | MS.gene32077:CDS |
| AGACAATGGCAAATTATTCC+TGG | 0.403958 | 1.2:+55506231 | MS.gene32077:CDS |
| CCAGGTGATGAGGGCATGCT+GGG | 0.407317 | 1.2:-55511890 | None:intergenic |
| CCGAATAACTGAAGCTAAAG+TGG | 0.411606 | 1.2:+55513545 | MS.gene32077:CDS |
| AGCTTCTCTACGAGAGTGTT+GGG | 0.413362 | 1.2:-55515507 | None:intergenic |
| TGTAATTATGTGGTATGAAA+GGG | 0.414470 | 1.2:-55508491 | None:intergenic |
| ATCCACCTATCTCCTGTTAG+AGG | 0.417590 | 1.2:+55515340 | MS.gene32077:CDS |
| TAGCAGGAAAGCTGATGATC+AGG | 0.417934 | 1.2:+55508258 | MS.gene32077:CDS |
| CCCAGCATGCCCTCATCACC+TGG | 0.423292 | 1.2:+55511890 | MS.gene32077:CDS |
| AGCCAATTGATCGGCTTGAA+TGG | 0.427786 | 1.2:-55514456 | None:intergenic |
| GGGGTTCCACTTGGAGGGAT+GGG | 0.431136 | 1.2:+55505987 | MS.gene32077:CDS |
| ATCCATTCAAGCCGATCAAT+TGG | 0.432522 | 1.2:+55514454 | MS.gene32077:CDS |
| ATGGCAGGATCCTATTCTTA+AGG | 0.433320 | 1.2:+55512630 | MS.gene32077:CDS |
| GGAGGATTACATAAAGAAAC+AGG | 0.434463 | 1.2:+55515361 | MS.gene32077:CDS |
| AGAGCTGAAGATGGCGTCTC+CGG | 0.438417 | 1.2:+55509678 | MS.gene32077:intron |
| TGAAAGGCAGCACTTTCAAC+AGG | 0.441957 | 1.2:+55512017 | MS.gene32077:CDS |
| ATGCTTTGTTTCCAAGAGCT+TGG | 0.444285 | 1.2:+55508329 | MS.gene32077:CDS |
| TGCTGTTTCAGCTTCCGCAT+GGG | 0.448130 | 1.2:+55511928 | MS.gene32077:CDS |
| CTATGATTCTACTGCTCCTA+GGG | 0.448143 | 1.2:+55513611 | MS.gene32077:CDS |
| CCTATGATTCTACTGCTCCT+AGG | 0.449205 | 1.2:+55513610 | MS.gene32077:CDS |
| TCTCGAGTGAAAGGATCTAT+AGG | 0.449861 | 1.2:-55505939 | None:intergenic |
| AGCATATCAAGAGGATTTAG+AGG | 0.452153 | 1.2:+55506201 | MS.gene32077:CDS |
| CAATGGTATACAGCATCCTC+AGG | 0.452922 | 1.2:+55514482 | MS.gene32077:CDS |
| CTTCTCCAAGCTTGTTCAGG+AGG | 0.456855 | 1.2:-55505457 | None:intergenic |
| CGAAGTAGCGTAACAGCAAA+AGG | 0.462013 | 1.2:+55511678 | MS.gene32077:CDS |
| TCCATTGCAGCTCGGACAGC+AGG | 0.462620 | 1.2:-55514149 | None:intergenic |
| CTGCTGTTTCAGCTTCCGCA+TGG | 0.463351 | 1.2:+55511927 | MS.gene32077:CDS |
| TGGTGGAAGGTTCTTGTACT+TGG | 0.463613 | 1.2:+55513776 | MS.gene32077:CDS |
| TGCTGTTACGCTACTTCGGT+CGG | 0.464082 | 1.2:-55511673 | None:intergenic |
| TCATAAACAGTCCAAGCTCT+TGG | 0.465016 | 1.2:-55508340 | None:intergenic |
| GCTGCAACAATGATACTTGC+AGG | 0.465363 | 1.2:+55514686 | MS.gene32077:CDS |
| GCCTGCTGTCCGAGCTGCAA+TGG | 0.466643 | 1.2:+55514148 | MS.gene32077:CDS |
| TGAGAGAGCTGCAGTGCACC+TGG | 0.469761 | 1.2:+55512396 | MS.gene32077:CDS |
| TAAGGATGGGCAATTTGATC+GGG | 0.470665 | 1.2:+55511850 | MS.gene32077:intron |
| GGGTTCCACTTGGAGGGATG+GGG | 0.471807 | 1.2:+55505988 | MS.gene32077:CDS |
| CTGTAATTATGTGGTATGAA+AGG | 0.472855 | 1.2:-55508492 | None:intergenic |
| CCAGAGGCATTTACAATTGA+CGG | 0.473164 | 1.2:+55515205 | MS.gene32077:CDS |
| TTCATTGTAGAAAGAATTCG+TGG | 0.473789 | 1.2:+55504843 | MS.gene32077:CDS |
| AAATGAGACTCACAGAGAAC+TGG | 0.473881 | 1.2:-55506284 | None:intergenic |
| CTGCTCCTCCTGAACAAGCT+TGG | 0.474967 | 1.2:+55505452 | MS.gene32077:CDS |
| CAAGCTGTCCTGTGTGAAGA+TGG | 0.475037 | 1.2:+55513909 | MS.gene32077:CDS |
| ATTCAAGCCGATCAATTGGC+TGG | 0.479609 | 1.2:+55514458 | MS.gene32077:CDS |
| CTGCTTTCTCTGTAATTATG+TGG | 0.483079 | 1.2:-55508501 | None:intergenic |
| AAAGTTAAAGGCGGCAGAAT+GGG | 0.484438 | 1.2:+55514575 | MS.gene32077:CDS |
| TAAGCATTCATTTCATGCCA+TGG | 0.484899 | 1.2:-55514017 | None:intergenic |
| CCTAGGAGCAGTAGAATCAT+AGG | 0.487066 | 1.2:-55513610 | None:intergenic |
| TATGCAGTCTCGAGAGATAT+GGG | 0.488836 | 1.2:+55514643 | MS.gene32077:CDS |
| GGTGGGAACTCTCACTTGTC+AGG | 0.489914 | 1.2:+55509533 | MS.gene32077:CDS |
| ACAGTGGCCTCATATATATG+AGG | 0.491959 | 1.2:-55515240 | None:intergenic |
| TTCATTCACAGAGCTGAAGA+TGG | 0.492280 | 1.2:+55509669 | MS.gene32077:intron |
| TCTCAAGGGGTTCCACTTGG+AGG | 0.494410 | 1.2:+55505981 | MS.gene32077:CDS |
| ACGCATGTGGTCATATGTTA+GGG | 0.494682 | 1.2:+55505741 | MS.gene32077:CDS |
| TTGGCTCCTGGTCAGCATGA+AGG | 0.494876 | 1.2:+55507357 | MS.gene32077:CDS |
| TTAAGGATGGGCAATTTGAT+CGG | 0.495077 | 1.2:+55511849 | MS.gene32077:intron |
| CCGAGCTGCAATGGAGTACA+TGG | 0.495164 | 1.2:+55514157 | MS.gene32077:CDS |
| AACATAACATACCAACTGTA+AGG | 0.499287 | 1.2:-55504894 | None:intergenic |
| GGGAAGAAGAGATTGCAAAA+TGG | 0.500460 | 1.2:+55512611 | MS.gene32077:CDS |
| CCGTCAATTGTAAATGCCTC+TGG | 0.500631 | 1.2:-55515205 | None:intergenic |
| ATCGGTCCCTCATATATATG+AGG | 0.500839 | 1.2:+55515233 | MS.gene32077:CDS |
| CAGCTTCTCTACGAGAGTGT+TGG | 0.501196 | 1.2:-55515508 | None:intergenic |
| AGCTTCTCATCCTTAAGAAT+AGG | 0.503401 | 1.2:-55512640 | None:intergenic |
| ATGATCAGGGTATATCATCA+TGG | 0.507713 | 1.2:+55508272 | MS.gene32077:CDS |
| GAGAACTGGTTGGCCATGAC+AGG | 0.508265 | 1.2:-55506270 | None:intergenic |
| TTGTCAATGCATCATGAGCC+AGG | 0.508522 | 1.2:-55512414 | None:intergenic |
| TTGCAACTTTCTCGAGTGAA+AGG | 0.510427 | 1.2:-55505948 | None:intergenic |
| GTTTCATCCACCTTACCGTT+GGG | 0.511276 | 1.2:-55514617 | None:intergenic |
| ATCCTCCTCTAACAGGAGAT+AGG | 0.513477 | 1.2:-55515345 | None:intergenic |
| GATGGTCTTATTGAGAATGA+TGG | 0.516775 | 1.2:+55514200 | MS.gene32077:CDS |
| TCTTCAAGCTGCAGCTGCAA+TGG | 0.516844 | 1.2:+55514298 | MS.gene32077:CDS |
| CCTGGTCAGCATGAAGGTGT+AGG | 0.519673 | 1.2:+55507363 | MS.gene32077:CDS |
| CTGATCAAACATATGATACA+TGG | 0.520231 | 1.2:+55514228 | MS.gene32077:CDS |
| GGCTGGTCAGAAGAAGGATA+CGG | 0.520711 | 1.2:+55514755 | MS.gene32077:CDS |
| CTCTACTTTCTTGTTGCTGG+AGG | 0.522845 | 1.2:+55513307 | MS.gene32077:CDS |
| GAAAGTTAAAGGCGGCAGAA+TGG | 0.527675 | 1.2:+55514574 | MS.gene32077:CDS |
| ATGCAAAAGGAAGTTTATGA+AGG | 0.528934 | 1.2:+55514355 | MS.gene32077:CDS |
| TGCAATTTGGTGTCGATGTG+TGG | 0.529941 | 1.2:+55514126 | MS.gene32077:CDS |
| TCAAGATCAAAAGTTCTCTC+CGG | 0.530516 | 1.2:+55514528 | MS.gene32077:CDS |
| AAAATGGTGGTCAAGGGCCG+GGG | 0.531144 | 1.2:+55515534 | MS.gene32077:CDS |
| GGTTTCATCCACCTTACCGT+TGG | 0.531435 | 1.2:-55514618 | None:intergenic |
| CAGAGGCATTTACAATTGAC+GGG | 0.533907 | 1.2:+55515206 | MS.gene32077:CDS |
| GCATCTCAAGGGGTTCCACT+TGG | 0.534772 | 1.2:+55505978 | MS.gene32077:CDS |
| CTGTTGCATTTAGTCTTGCA+TGG | 0.535873 | 1.2:+55511972 | MS.gene32077:CDS |
| CTAGCAGGCTGGTCAGAAGA+AGG | 0.537501 | 1.2:+55514749 | MS.gene32077:CDS |
| TGATCAGGGTATATCATCAT+GGG | 0.539292 | 1.2:+55508273 | MS.gene32077:CDS |
| ATTCTTTAAGAAGATTGGCA+TGG | 0.539896 | 1.2:-55505492 | None:intergenic |
| GTTTCTGGCAGAGGGAAACT+GGG | 0.542995 | 1.2:+55513944 | MS.gene32077:CDS |
| GCTGAGGGTATATTTCTAGC+AGG | 0.543807 | 1.2:+55514734 | MS.gene32077:CDS |
| TTACAATTGACGGGCACTAT+CGG | 0.545338 | 1.2:+55515215 | MS.gene32077:CDS |
| GAGAGTAAAGTTTCTGGCAG+AGG | 0.545432 | 1.2:+55513935 | MS.gene32077:CDS |
| GGAAGGTTCTTGTACTTGGA+AGG | 0.545489 | 1.2:+55513780 | MS.gene32077:CDS |
| CCTACACCTTCATGCTGACC+AGG | 0.546036 | 1.2:-55507363 | None:intergenic |
| AACAATGATACTTGCAGGAA+TGG | 0.546051 | 1.2:+55514691 | MS.gene32077:CDS |
| TGCAAGCCATCTGCATCTCA+AGG | 0.547185 | 1.2:+55505966 | MS.gene32077:CDS |
| GTGGTCATATGTTAGGGAAG+AGG | 0.550645 | 1.2:+55505747 | MS.gene32077:CDS |
| GGGAAGAGGCTTCTCATGGA+AGG | 0.551137 | 1.2:+55505761 | MS.gene32077:CDS |
| GTTAGGGAAGAGGCTTCTCA+TGG | 0.552515 | 1.2:+55505757 | MS.gene32077:CDS |
| AGAAGAGATTGCAAAATGGC+AGG | 0.552563 | 1.2:+55512615 | MS.gene32077:CDS |
| AGGGTATATCATCATGGGGA+TGG | 0.552996 | 1.2:+55508278 | MS.gene32077:CDS |
| AGAGCTTGGACTGTTTATGA+TGG | 0.553201 | 1.2:+55508343 | MS.gene32077:CDS |
| GGGAAACTGGGGAACTCGTA+AGG | 0.554907 | 1.2:+55513956 | MS.gene32077:CDS |
| ACGGTGAATACTCTCAGAAA+CGG | 0.554931 | 1.2:+55513687 | MS.gene32077:CDS |
| CTCAAGGGGTTCCACTTGGA+GGG | 0.555712 | 1.2:+55505982 | MS.gene32077:CDS |
| TAGTGTCTCTCCAGGTGATG+AGG | 0.558574 | 1.2:-55511900 | None:intergenic |
| CTGGTCAGCATGAAGGTGTA+GGG | 0.558732 | 1.2:+55507364 | MS.gene32077:CDS |
| CCGATCAATTGGCTGGGCAA+TGG | 0.559132 | 1.2:+55514465 | MS.gene32077:CDS |
| AGGGTATATTTCTAGCAGGC+TGG | 0.559806 | 1.2:+55514738 | MS.gene32077:CDS |
| GCTGGAGGAACAATTTGGAT+AGG | 0.560165 | 1.2:+55513322 | MS.gene32077:CDS |
| CAGTCTCGAGAGATATGGGC+AGG | 0.560172 | 1.2:+55514647 | MS.gene32077:CDS |
| TTGTGCAGAATTCTATTGGT+GGG | 0.560692 | 1.2:+55509516 | MS.gene32077:intron |
| TATCTCTCGAGACTGCATAC+AGG | 0.561033 | 1.2:-55514639 | None:intergenic |
| AAGCATGGTACGTTGAGTGC+TGG | 0.564049 | 1.2:-55508312 | None:intergenic |
| TTCAAGCCGATCAATTGGCT+GGG | 0.565771 | 1.2:+55514459 | MS.gene32077:CDS |
| GTTCTTGTACTTGGAAGGTG+TGG | 0.567369 | 1.2:+55513785 | MS.gene32077:CDS |
| AGTGTCTCTCCAGGTGATGA+GGG | 0.572454 | 1.2:-55511899 | None:intergenic |
| CCATGTACTCCATTGCAGCT+CGG | 0.573822 | 1.2:-55514157 | None:intergenic |
| TTATTGATATACTCTTCAGT+AGG | 0.573949 | 1.2:-55504866 | None:intergenic |
| GCAGCACATAGTGTCTCTCC+AGG | 0.574981 | 1.2:-55511908 | None:intergenic |
| ATGTGAACCATCACCTGTCA+TGG | 0.576503 | 1.2:+55506257 | MS.gene32077:CDS |
| AAATATGAGAAATAATAGCC+AGG | 0.577227 | 1.2:+55513491 | MS.gene32077:CDS |
| TGGCATGCATCCCAACGGTA+AGG | 0.577901 | 1.2:+55514607 | MS.gene32077:CDS |
| CCATTGCCCAGCCAATTGAT+CGG | 0.578065 | 1.2:-55514465 | None:intergenic |
| GCTGCAATGGCGATTCAACT+AGG | 0.581074 | 1.2:+55514311 | MS.gene32077:CDS |
| CCGAAAGTGAAGTTTGTGAA+AGG | 0.581461 | 1.2:+55512001 | MS.gene32077:CDS |
| CAATAAAACCACCTTACAGT+TGG | 0.581904 | 1.2:+55504883 | MS.gene32077:CDS |
| GCAAGCCATCTGCATCTCAA+GGG | 0.582594 | 1.2:+55505967 | MS.gene32077:CDS |
| GATCAAAAGTTCTCTCCGGA+AGG | 0.582612 | 1.2:+55514532 | MS.gene32077:CDS |
| TATGAACAAAAGCTGTGGAA+TGG | 0.583308 | 1.2:+55514389 | MS.gene32077:CDS |
| CATGCATCCCAACGGTAAGG+TGG | 0.585856 | 1.2:+55514610 | MS.gene32077:CDS |
| AGAGTAAAGTTTCTGGCAGA+GGG | 0.586626 | 1.2:+55513936 | MS.gene32077:CDS |
| CGAAACAGATTATACACGGT+GGG | 0.586630 | 1.2:+55512591 | MS.gene32077:intron |
| CGGTCGGACAGCCCAAAACA+TGG | 0.589504 | 1.2:-55511657 | None:intergenic |
| ATGTATCATATGTTTGATCA+GGG | 0.589770 | 1.2:-55514226 | None:intergenic |
| TCCGCATGGGTGGAACCCCA+TGG | 0.592731 | 1.2:+55511941 | MS.gene32077:CDS |
| TGTTTCAGCTTCCGCATGGG+TGG | 0.593550 | 1.2:+55511931 | MS.gene32077:CDS |
| GAGGCCTTCACAACTGCTGA+GGG | 0.595335 | 1.2:+55514719 | MS.gene32077:CDS |
| CATGATGATGATAATGATGA+TGG | 0.598644 | 1.2:+55513756 | MS.gene32077:CDS |
| GATGATGATAATGATGATGG+TGG | 0.599702 | 1.2:+55513759 | MS.gene32077:CDS |
| TATACCCTCAGCAGTTGTGA+AGG | 0.600362 | 1.2:-55514723 | None:intergenic |
| GCTGGTCAGAAGAAGGATAC+GGG | 0.601383 | 1.2:+55514756 | MS.gene32077:CDS |
| ACTTGCAGGAATGGAAGAAG+AGG | 0.601561 | 1.2:+55514700 | MS.gene32077:CDS |
| CACCTATCTCCTGTTAGAGG+AGG | 0.602664 | 1.2:+55515343 | MS.gene32077:CDS |
| ATATGGGCAGGTGTGACCTA+CGG | 0.602987 | 1.2:+55514659 | MS.gene32077:CDS |
| GCGTAACAGCAAAAGGAATG+TGG | 0.603596 | 1.2:+55511685 | MS.gene32077:CDS |
| CTCTCCTTCCATCTTCACAC+AGG | 0.603646 | 1.2:-55513917 | None:intergenic |
| ATTTGGGGACACATGATCCA+TGG | 0.607898 | 1.2:+55514000 | MS.gene32077:CDS |
| CTCCTCTAACAGGAGATAGG+TGG | 0.608598 | 1.2:-55515342 | None:intergenic |
| GTAATTATGTGGTATGAAAG+GGG | 0.610838 | 1.2:-55508490 | None:intergenic |
| AGCAGGAAAGCTGATGATCA+GGG | 0.611643 | 1.2:+55508259 | MS.gene32077:CDS |
| GGGTTAGTAACAGTGTGAAG+AGG | 0.611676 | 1.2:-55515487 | None:intergenic |
| TATGCCAAAGGCAGTACTTG+AGG | 0.611801 | 1.2:+55515291 | MS.gene32077:CDS |
| AGAGGCCTTCACAACTGCTG+AGG | 0.613758 | 1.2:+55514718 | MS.gene32077:CDS |
| GGTGTGAGTGCTTACTGTGG+TGG | 0.615502 | 1.2:+55514260 | MS.gene32077:CDS |
| TCCTAGGGGACATAGTCACT+TGG | 0.616516 | 1.2:+55513626 | MS.gene32077:CDS |
| TCCAAGTGACTATGTCCCCT+AGG | 0.619743 | 1.2:-55513627 | None:intergenic |
| GATTTGGAAAGAATGGTTAG+CGG | 0.622055 | 1.2:+55504812 | None:intergenic |
| CACAGTAAGCACTCACACCA+TGG | 0.625608 | 1.2:-55514256 | None:intergenic |
| GGAAGAGGCTTCTCATGGAA+GGG | 0.626324 | 1.2:+55505762 | MS.gene32077:CDS |
| ACATTCATGATACTAGCAAG+TGG | 0.630589 | 1.2:+55514042 | MS.gene32077:CDS |
| TGGTTGGCCATGACAGGTGA+TGG | 0.630994 | 1.2:-55506264 | None:intergenic |
| ATGAGGCCACTGTCAATTTG+GGG | 0.631387 | 1.2:+55515250 | MS.gene32077:CDS |
| AGGATGAGAAGCTACCAGAA+TGG | 0.634200 | 1.2:+55512650 | MS.gene32077:CDS |
| AATGTGGACTAAAATGGTGA+AGG | 0.634442 | 1.2:+55511701 | MS.gene32077:CDS |
| GGGCTGTCCCACATGATTTG+GGG | 0.634911 | 1.2:+55513985 | MS.gene32077:CDS |
| CTGTCCTGTGTGAAGATGGA+AGG | 0.636012 | 1.2:+55513913 | MS.gene32077:CDS |
| TATGATACATGGACTGTCCA+TGG | 0.636500 | 1.2:+55514239 | MS.gene32077:CDS |
| CAAGCCATCTGCATCTCAAG+GGG | 0.636690 | 1.2:+55505968 | MS.gene32077:CDS |
| TGTATATTTAATTCAATACG+AGG | 0.637943 | 1.2:-55513873 | None:intergenic |
| GGAACCCCTTGAGATGCAGA+TGG | 0.638569 | 1.2:-55505972 | None:intergenic |
| CAGTGGCCTCATATATATGA+GGG | 0.641376 | 1.2:-55515239 | None:intergenic |
| TTCGATTAGGTATACGCATG+TGG | 0.644863 | 1.2:+55505728 | MS.gene32077:CDS |
| TATATCCCATGAAAATGGAA+CGG | 0.646364 | 1.2:+55513668 | MS.gene32077:CDS |
| TCATACCCCATCCCTCCAAG+TGG | 0.648533 | 1.2:-55505993 | None:intergenic |
| CTTGTGCAGAATTCTATTGG+TGG | 0.648579 | 1.2:+55509515 | MS.gene32077:intron |
| TCATGTGTCCCCAAATCATG+TGG | 0.650108 | 1.2:-55513993 | None:intergenic |
| ATATGCATTAACTATGCCAA+AGG | 0.651288 | 1.2:+55515279 | MS.gene32077:CDS |
| CATTGTTGCAGCAACACCGT+AGG | 0.654279 | 1.2:-55514675 | None:intergenic |
| ATGATAATGATGATGGTGGA+AGG | 0.654300 | 1.2:+55513763 | MS.gene32077:CDS |
| AAGCTCTTGGAAACAAAGCA+TGG | 0.659885 | 1.2:-55508327 | None:intergenic |
| CAATTCGATAGAGATGCTGA+TGG | 0.661858 | 1.2:+55514182 | MS.gene32077:CDS |
| AGGAGTGGCAGCATATCAAG+AGG | 0.664942 | 1.2:+55506192 | MS.gene32077:intron |
| TACAAGTTACAACTGAACCC+CGG | 0.668319 | 1.2:-55515551 | None:intergenic |
| GGGAACTCGTAAGGTTTATG+GGG | 0.669077 | 1.2:+55513965 | MS.gene32077:CDS |
| TCCATGGGGTTCCACCCATG+CGG | 0.669209 | 1.2:-55511942 | None:intergenic |
| GTAAATGGCATGCATCCCAA+CGG | 0.671633 | 1.2:+55514602 | MS.gene32077:CDS |
| CAGTATATGAACAAAAGCTG+TGG | 0.672417 | 1.2:+55514384 | MS.gene32077:CDS |
| TTAGAGGTGAATTCAGACAA+TGG | 0.673231 | 1.2:+55506217 | MS.gene32077:CDS |
| AATGGTATACAGCATCCTCA+GGG | 0.677357 | 1.2:+55514483 | MS.gene32077:CDS |
| CATGTGTCCCCAAATCATGT+GGG | 0.677655 | 1.2:-55513992 | None:intergenic |
| GATCAGGGTATATCATCATG+GGG | 0.682964 | 1.2:+55508274 | MS.gene32077:CDS |
| GGTGATGGTTCACATAGACC+AGG | 0.689207 | 1.2:-55506249 | None:intergenic |
| ATAACATACCAACTGTAAGG+TGG | 0.689223 | 1.2:-55504891 | None:intergenic |
| GAGACTCACAGAGAACTGGT+TGG | 0.689270 | 1.2:-55506280 | None:intergenic |
| GAATCGAAACAGATTATACA+CGG | 0.692636 | 1.2:+55512587 | MS.gene32077:intron |
| TGCATGCCCCAAATTGACAG+TGG | 0.696126 | 1.2:-55515256 | None:intergenic |
| CATGGTGTGAGTGCTTACTG+TGG | 0.707900 | 1.2:+55514257 | MS.gene32077:CDS |
| CTTGTGATATAGAAGTACGC+CGG | 0.716435 | 1.2:-55509697 | None:intergenic |
| AATGTGATGAAAGTTAAAGG+CGG | 0.717612 | 1.2:+55514566 | MS.gene32077:CDS |
| TTTCTGGCAGAGGGAAACTG+GGG | 0.722226 | 1.2:+55513945 | MS.gene32077:CDS |
| TCGAAACAGATTATACACGG+TGG | 0.728849 | 1.2:+55512590 | MS.gene32077:intron |
| TATGATTCTACTGCTCCTAG+GGG | 0.747175 | 1.2:+55513612 | MS.gene32077:CDS |
| ATACTGGTTTCAGACTCCAG+AGG | 0.761858 | 1.2:+55515189 | MS.gene32077:CDS |
| AAGGTGTGGAATATGTCATG+TGG | 0.762463 | 1.2:+55513799 | MS.gene32077:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 55504824 | 55515574 | 55504824 | ID=MS.gene32077 |
| chr1.2 | mRNA | 55504824 | 55515574 | 55504824 | ID=MS.gene32077.t1;Parent=MS.gene32077 |
| chr1.2 | exon | 55504824 | 55504904 | 55504824 | ID=MS.gene32077.t1.exon1;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55504824 | 55504904 | 55504824 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55505436 | 55505546 | 55505436 | ID=MS.gene32077.t1.exon2;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55505436 | 55505546 | 55505436 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55505727 | 55505783 | 55505727 | ID=MS.gene32077.t1.exon3;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55505727 | 55505783 | 55505727 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55505933 | 55506009 | 55505933 | ID=MS.gene32077.t1.exon4;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55505933 | 55506009 | 55505933 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55506194 | 55506293 | 55506194 | ID=MS.gene32077.t1.exon5;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55506194 | 55506293 | 55506194 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55507312 | 55507385 | 55507312 | ID=MS.gene32077.t1.exon6;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55507312 | 55507385 | 55507312 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55508255 | 55508364 | 55508255 | ID=MS.gene32077.t1.exon7;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55508255 | 55508364 | 55508255 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55508448 | 55508551 | 55508448 | ID=MS.gene32077.t1.exon8;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55508448 | 55508551 | 55508448 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55509377 | 55509430 | 55509377 | ID=MS.gene32077.t1.exon9;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55509377 | 55509430 | 55509377 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55509524 | 55509579 | 55509524 | ID=MS.gene32077.t1.exon10;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55509524 | 55509579 | 55509524 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55509680 | 55509718 | 55509680 | ID=MS.gene32077.t1.exon11;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55509680 | 55509718 | 55509680 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55511581 | 55511722 | 55511581 | ID=MS.gene32077.t1.exon12;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55511581 | 55511722 | 55511581 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55511854 | 55512038 | 55511854 | ID=MS.gene32077.t1.exon13;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55511854 | 55512038 | 55511854 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55512369 | 55512436 | 55512369 | ID=MS.gene32077.t1.exon14;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55512369 | 55512436 | 55512369 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55512599 | 55512671 | 55512599 | ID=MS.gene32077.t1.exon15;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55512599 | 55512671 | 55512599 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55513282 | 55513343 | 55513282 | ID=MS.gene32077.t1.exon16;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55513282 | 55513343 | 55513282 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55513472 | 55514777 | 55513472 | ID=MS.gene32077.t1.exon17;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55513472 | 55514777 | 55513472 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55515189 | 55515382 | 55515189 | ID=MS.gene32077.t1.exon18;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55515189 | 55515382 | 55515189 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| chr1.2 | exon | 55515483 | 55515574 | 55515483 | ID=MS.gene32077.t1.exon19;Parent=MS.gene32077.t1 |
| chr1.2 | CDS | 55515483 | 55515574 | 55515483 | ID=cds.MS.gene32077.t1;Parent=MS.gene32077.t1 |
| Gene Sequence |
| Protein sequence |
