Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042447.t1 | XP_003624658.1 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 5.30E-130 | 473.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042447.t1 | Q9LFD5 | 40.9 | 247 | 124 | 3 | 2 | 248 | 4 | 228 | 8.6e-36 | 152.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042447.t1 | Q2HVL4 | 97.3 | 259 | 7 | 0 | 1 | 259 | 1 | 259 | 3.8e-130 | 473.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene027939 | MS.gene042447 | PPI |
| MS.gene042447 | MS.gene051314 | PPI |
| MS.gene042447 | MS.gene78939 | PPI |
| MS.gene042447 | MS.gene97723 | PPI |
| MS.gene042447 | MS.gene61014 | PPI |
| MS.gene042447 | MS.gene71213 | PPI |
| MS.gene042447 | MS.gene009024 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042447.t1 | MTR_7g086080 | 98.456 | 259 | 4 | 0 | 1 | 259 | 1 | 259 | 0.0 | 520 |
| MS.gene042447.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 17 | 254 | 8.21e-75 | 230 |
| MS.gene042447.t1 | MTR_8g066460 | 49.606 | 254 | 110 | 3 | 1 | 252 | 1 | 238 | 1.14e-74 | 229 |
| MS.gene042447.t1 | MTR_5g029640 | 46.063 | 254 | 119 | 3 | 1 | 252 | 1 | 238 | 9.41e-63 | 204 |
| MS.gene042447.t1 | MTR_5g029640 | 49.242 | 132 | 67 | 0 | 121 | 252 | 279 | 410 | 4.45e-34 | 128 |
| MS.gene042447.t1 | MTR_8g105910 | 40.964 | 249 | 129 | 2 | 4 | 252 | 32 | 262 | 1.22e-61 | 197 |
| MS.gene042447.t1 | MTR_1g032860 | 41.365 | 249 | 127 | 2 | 4 | 252 | 32 | 261 | 2.06e-60 | 194 |
| MS.gene042447.t1 | MTR_5g039130 | 38.710 | 248 | 131 | 5 | 6 | 244 | 10 | 245 | 1.67e-47 | 158 |
| MS.gene042447.t1 | MTR_7g010100 | 33.597 | 253 | 134 | 7 | 5 | 237 | 7 | 245 | 1.42e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042447.t1 | AT5G32450 | 73.180 | 261 | 68 | 2 | 1 | 259 | 1 | 261 | 8.00e-136 | 384 |
| MS.gene042447.t1 | AT4G17720 | 46.484 | 256 | 117 | 2 | 1 | 252 | 1 | 240 | 2.38e-68 | 214 |
| MS.gene042447.t1 | AT5G16840 | 45.749 | 247 | 113 | 3 | 2 | 248 | 4 | 229 | 3.50e-66 | 207 |
| MS.gene042447.t1 | AT5G16840 | 45.749 | 247 | 112 | 3 | 2 | 248 | 4 | 228 | 7.17e-66 | 206 |
| MS.gene042447.t1 | AT5G16840 | 45.565 | 248 | 113 | 3 | 1 | 248 | 1 | 226 | 9.75e-66 | 206 |
| MS.gene042447.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 9.85e-65 | 204 |
| MS.gene042447.t1 | AT5G46870 | 42.912 | 261 | 123 | 2 | 1 | 252 | 1 | 244 | 9.85e-65 | 204 |
| MS.gene042447.t1 | AT1G67950 | 38.034 | 234 | 128 | 2 | 4 | 237 | 29 | 245 | 2.59e-53 | 174 |
| MS.gene042447.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 29 | 244 | 5.84e-53 | 173 |
| MS.gene042447.t1 | AT1G67950 | 38.462 | 234 | 126 | 2 | 4 | 237 | 30 | 245 | 7.06e-53 | 173 |
| MS.gene042447.t1 | AT1G14340 | 38.494 | 239 | 140 | 3 | 6 | 244 | 9 | 240 | 3.26e-42 | 145 |
| MS.gene042447.t1 | AT1G67950 | 40.000 | 195 | 99 | 2 | 43 | 237 | 9 | 185 | 7.46e-42 | 143 |
| MS.gene042447.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.28e-37 | 133 |
| MS.gene042447.t1 | AT3G01210 | 35.000 | 240 | 130 | 5 | 7 | 233 | 9 | 235 | 1.28e-37 | 133 |
Find 52 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAATTCTTCTCATTCTC+TGG | 0.285143 | 7.2:+21808272 | MS.gene042447:CDS |
| AATGTCACAAATGCAGTCTT+TGG | 0.286462 | 7.2:-21808776 | None:intergenic |
| TTTGCTTGTTGCAGAGAATA+TGG | 0.318014 | 7.2:+21808749 | MS.gene042447:intron |
| GTATTTGACGCGGCATCTTC+AGG | 0.323691 | 7.2:-21809858 | None:intergenic |
| TGAAATTGCGTTATTGTTAT+CGG | 0.324746 | 7.2:+21808817 | MS.gene042447:CDS |
| AACTAGAGAGAAGTTTAATA+TGG | 0.366039 | 7.2:+21810964 | MS.gene042447:CDS |
| GCAAGGGCTGGAAACGTTGC+TGG | 0.377253 | 7.2:+21810935 | MS.gene042447:CDS |
| GCTGGAACAACATGGTTAAC+TGG | 0.389119 | 7.2:+21810896 | MS.gene042447:CDS |
| GAGAGGAAGTTGAATGATAC+TGG | 0.403876 | 7.2:+21810263 | MS.gene042447:CDS |
| AACTATGCTGGCAAAAGGTT+CGG | 0.428867 | 7.2:+21810028 | MS.gene042447:CDS |
| TTTAGCAAGGTGGCAAGGGC+TGG | 0.431556 | 7.2:+21810923 | MS.gene042447:CDS |
| TAACGCAATTTCAAGCGCTC+TGG | 0.432460 | 7.2:-21808807 | None:intergenic |
| TTGAACACATTCAGATCGTT+GGG | 0.448882 | 7.2:+21808300 | MS.gene042447:CDS |
| ATTGAACACATTCAGATCGT+TGG | 0.456764 | 7.2:+21808299 | MS.gene042447:CDS |
| CTTTGATGTCAAGTTTGAAA+CGG | 0.482047 | 7.2:-21810987 | None:intergenic |
| AAGTAATTTATGTAGGAAGT+GGG | 0.492069 | 7.2:+21809807 | MS.gene042447:intron |
| CGTTTCAAACTTGACATCAA+AGG | 0.502962 | 7.2:+21810988 | MS.gene042447:CDS |
| ACTAAGATATACTCTTCCAC+CGG | 0.504930 | 7.2:-21809985 | None:intergenic |
| AACGCAATTTCAAGCGCTCT+GGG | 0.507323 | 7.2:-21808806 | None:intergenic |
| CTCTTTCAGGAGGAGAAACC+CGG | 0.521062 | 7.2:+21809966 | MS.gene042447:intron |
| GTTACAACTATGCTGGCAAA+AGG | 0.522844 | 7.2:+21810023 | MS.gene042447:CDS |
| ACTGACCTTTGCAGATGCAT+TGG | 0.525594 | 7.2:-21810111 | None:intergenic |
| TGTGGCAAACCGTGAGATGC+AGG | 0.527957 | 7.2:+21809716 | MS.gene042447:CDS |
| TGCATTTAGCAAGGTGGCAA+GGG | 0.529790 | 7.2:+21810919 | MS.gene042447:CDS |
| GTGCATTTAGCAAGGTGGCA+AGG | 0.536580 | 7.2:+21810918 | MS.gene042447:CDS |
| TTTGCCACATAGTTCTCGAC+TGG | 0.548888 | 7.2:-21809702 | None:intergenic |
| AGTAATTTATGTAGGAAGTG+GGG | 0.552167 | 7.2:+21809808 | MS.gene042447:intron |
| GCATGCAGATATGTGACTGC+TGG | 0.562534 | 7.2:+21810878 | MS.gene042447:intron |
| AGATGTGGTTACAACTATGC+TGG | 0.563766 | 7.2:+21810016 | MS.gene042447:CDS |
| AGTATCATTCAACTTCCTCT+CGG | 0.584802 | 7.2:-21810261 | None:intergenic |
| TTGAATATTTCAGACAAGGA+CGG | 0.584833 | 7.2:+21808205 | MS.gene042447:intron |
| GACTGCCAATGCATCTGCAA+AGG | 0.597300 | 7.2:+21810106 | MS.gene042447:CDS |
| AAGTGAAGTCTGTGGATCAG+AGG | 0.597757 | 7.2:+21810198 | MS.gene042447:CDS |
| GTACAGCTACCTGCATCTCA+CGG | 0.600081 | 7.2:-21809725 | None:intergenic |
| GTTAACTGGTGCATTTAGCA+AGG | 0.607564 | 7.2:+21810910 | MS.gene042447:CDS |
| GTAATTTATGTAGGAAGTGG+GGG | 0.607927 | 7.2:+21809809 | MS.gene042447:intron |
| TTCAGATCTAGCTACTGAGA+GGG | 0.608323 | 7.2:+21808244 | MS.gene042447:CDS |
| GATCAGCCGTCAAAACAAGC+AGG | 0.610495 | 7.2:+21810285 | MS.gene042447:CDS |
| CTGACAGAGAAATTGACAGT+TGG | 0.610991 | 7.2:+21810155 | MS.gene042447:CDS |
| CTAAGATATACTCTTCCACC+GGG | 0.618426 | 7.2:-21809984 | None:intergenic |
| TCTTAGTAAAGCACAAGATG+TGG | 0.626024 | 7.2:+21810001 | MS.gene042447:CDS |
| CTTCACTTTCTCATTCACCA+CGG | 0.639756 | 7.2:-21810183 | None:intergenic |
| AACTGGTGCATTTAGCAAGG+TGG | 0.655445 | 7.2:+21810913 | MS.gene042447:CDS |
| TTTCAGATCTAGCTACTGAG+AGG | 0.669065 | 7.2:+21808243 | MS.gene042447:CDS |
| CAGCAATATTTGCAGCCGAG+AGG | 0.674375 | 7.2:+21810246 | MS.gene042447:CDS |
| AAGTCCAGTCGAGAACTATG+TGG | 0.688839 | 7.2:+21809698 | MS.gene042447:CDS |
| ACATGTTTCAGATAAAACAA+TGG | 0.699760 | 7.2:+21810223 | MS.gene042447:CDS |
| GAATGAGAAAGTGAAGTCTG+TGG | 0.702365 | 7.2:+21810190 | MS.gene042447:CDS |
| ATTGACAGTTGGACTCTCCG+TGG | 0.704504 | 7.2:+21810166 | MS.gene042447:CDS |
| AGATGCCGCGTCAAATACTG+AGG | 0.716016 | 7.2:+21809863 | MS.gene042447:CDS |
| TTTCAGGAGGAGAAACCCGG+TGG | 0.733275 | 7.2:+21809969 | MS.gene042447:intron |
| ATGTGACTGCTGGAACAACA+TGG | 0.736483 | 7.2:+21810888 | MS.gene042447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAACAAAAACATAAT+GGG | + | chr7.2:21808517-21808536 | MS.gene042447:intron | 10.0% |
| !! | ACTAAAATTAAAAAACAAAA+GGG | - | chr7.2:21808374-21808393 | None:intergenic | 10.0% |
| !! | TAAAATAAACAAAAACATAA+TGG | + | chr7.2:21808516-21808535 | MS.gene042447:intron | 10.0% |
| !!! | GATTTTATATTAAATTGTTA+TGG | + | chr7.2:21810364-21810383 | MS.gene042447:intron | 10.0% |
| !!! | TGTTTTTGTTTATTTTATTT+TGG | - | chr7.2:21808513-21808532 | None:intergenic | 10.0% |
| !! | ATTAAAATGAAAACTACAAA+TGG | + | chr7.2:21810691-21810710 | MS.gene042447:intron | 15.0% |
| !! | CAAAAATAATATACAACATA+GGG | - | chr7.2:21810834-21810853 | None:intergenic | 15.0% |
| !! | CACTAAAATTAAAAAACAAA+AGG | - | chr7.2:21808375-21808394 | None:intergenic | 15.0% |
| !! | CTAAAATTAAAAAACAAAAG+GGG | - | chr7.2:21808373-21808392 | None:intergenic | 15.0% |
| !! | GAAAAAAGAATACAAAAAAT+TGG | - | chr7.2:21811344-21811363 | None:intergenic | 15.0% |
| !! | TCAAAAATAATATACAACAT+AGG | - | chr7.2:21810835-21810854 | None:intergenic | 15.0% |
| !! | TTATCAAAAGTAATTTATGT+AGG | + | chr7.2:21809800-21809819 | MS.gene042447:intron | 15.0% |
| !!! | AATTTTGAATAAAAACTTGT+AGG | + | chr7.2:21808929-21808948 | MS.gene042447:intron | 15.0% |
| !!! | ATTTTGAATAAAAACTTGTA+GGG | + | chr7.2:21808930-21808949 | MS.gene042447:intron | 15.0% |
| !!! | TGAAATTTAAAACAATATGT+GGG | + | chr7.2:21808639-21808658 | MS.gene042447:intron | 15.0% |
| !!! | TTGAAATTTAAAACAATATG+TGG | + | chr7.2:21808638-21808657 | MS.gene042447:intron | 15.0% |
| !!! | TTTGTTTTGAAATTTTTGTT+GGG | + | chr7.2:21808554-21808573 | MS.gene042447:intron | 15.0% |
| !!! | TTTTGTTTTGAAATTTTTGT+TGG | + | chr7.2:21808553-21808572 | MS.gene042447:intron | 15.0% |
| !! | AATTAAGAGCAATTGATATT+TGG | - | chr7.2:21809750-21809769 | None:intergenic | 20.0% |
| !! | TATGAACATTTAGTTAAGAT+TGG | + | chr7.2:21809298-21809317 | MS.gene042447:intron | 20.0% |
| !! | TTGCAATTAAAAATGAAAAC+AGG | - | chr7.2:21810551-21810570 | None:intergenic | 20.0% |
| !!! | CTATTATCTTTAGTTTAACA+CGG | - | chr7.2:21811031-21811050 | None:intergenic | 20.0% |
| !!! | TAATTTGGTTTTTTCTTTCT+GGG | + | chr7.2:21808167-21808186 | MS.gene042447:intron | 20.0% |
| !!! | TATTTTTTTTCGTACCAATT+AGG | + | chr7.2:21810724-21810743 | MS.gene042447:intron | 20.0% |
| !!! | TTGTTTTGAAATTTTTGTTG+GGG | + | chr7.2:21808555-21808574 | MS.gene042447:intron | 20.0% |
| !!! | TTTAATTTTAGTGCCAATTA+AGG | + | chr7.2:21808382-21808401 | MS.gene042447:intron | 20.0% |
| ! | AAAGTAATTTATGTAGGAAG+TGG | + | chr7.2:21809806-21809825 | MS.gene042447:intron | 25.0% |
| ! | AAATATTGAAACATGACCAT+TGG | - | chr7.2:21810750-21810769 | None:intergenic | 25.0% |
| ! | AACTAGAGAGAAGTTTAATA+TGG | + | chr7.2:21810964-21810983 | MS.gene042447:CDS | 25.0% |
| ! | AAGAACATAGAATCATAGAT+AGG | - | chr7.2:21809576-21809595 | None:intergenic | 25.0% |
| ! | AAGATTTGTAAATGAAATCG+TGG | + | chr7.2:21810603-21810622 | MS.gene042447:intron | 25.0% |
| ! | AAGTAATTTATGTAGGAAGT+GGG | + | chr7.2:21809807-21809826 | MS.gene042447:intron | 25.0% |
| ! | AATGATACATCACATATACA+TGG | + | chr7.2:21810785-21810804 | MS.gene042447:intron | 25.0% |
| ! | AATGTTCATAACAAGTCAAA+AGG | - | chr7.2:21809288-21809307 | None:intergenic | 25.0% |
| ! | ACATGTTTCAGATAAAACAA+TGG | + | chr7.2:21810223-21810242 | MS.gene042447:CDS | 25.0% |
| ! | AGAACATAGAATCATAGATA+GGG | - | chr7.2:21809575-21809594 | None:intergenic | 25.0% |
| ! | ATCCATCACAAAATTGAAAA+TGG | - | chr7.2:21809245-21809264 | None:intergenic | 25.0% |
| ! | CAAGAACAAAAAACCTTAAT+TGG | - | chr7.2:21808398-21808417 | None:intergenic | 25.0% |
| ! | GAGTACAAATAAATTCCTTT+GGG | + | chr7.2:21809437-21809456 | MS.gene042447:intron | 25.0% |
| ! | GTAAACCACAAATAAATCAT+GGG | + | chr7.2:21808440-21808459 | MS.gene042447:intron | 25.0% |
| ! | TAAACCACAAATAAATCATG+GGG | + | chr7.2:21808441-21808460 | MS.gene042447:intron | 25.0% |
| ! | TATGTTAAATTGTTACAGTC+TGG | + | chr7.2:21810450-21810469 | MS.gene042447:intron | 25.0% |
| ! | TGAAATTGCGTTATTGTTAT+CGG | + | chr7.2:21808817-21808836 | MS.gene042447:CDS | 25.0% |
| ! | TGTAAACCACAAATAAATCA+TGG | + | chr7.2:21808439-21808458 | MS.gene042447:intron | 25.0% |
| ! | TTTCTTGAATATTTCAGACA+AGG | + | chr7.2:21808201-21808220 | MS.gene042447:intron | 25.0% |
| ! | TTTGTTCTTGAAGGTAAATT+TGG | + | chr7.2:21808408-21808427 | MS.gene042447:intron | 25.0% |
| !! | AAAATGTCTACATTGACTAA+GGG | + | chr7.2:21809163-21809182 | MS.gene042447:intron | 25.0% |
| !! | ATGATGACGAAATGAAATTT+AGG | + | chr7.2:21810499-21810518 | MS.gene042447:intron | 25.0% |
| !! | GAAATTCTTGCATATTGTTT+TGG | + | chr7.2:21808614-21808633 | MS.gene042447:intron | 25.0% |
| !! | GCTTTATTGTCTATATATCA+GGG | + | chr7.2:21809645-21809664 | MS.gene042447:intron | 25.0% |
| !! | TAGATTACCTTCTGTTTTAT+GGG | - | chr7.2:21809122-21809141 | None:intergenic | 25.0% |
| !! | TCTATGATTCTATGTTCTTT+TGG | + | chr7.2:21809577-21809596 | MS.gene042447:intron | 25.0% |
| !! | TGATGACGAAATGAAATTTA+GGG | + | chr7.2:21810500-21810519 | MS.gene042447:intron | 25.0% |
| !! | TTAGATTACCTTCTGTTTTA+TGG | - | chr7.2:21809123-21809142 | None:intergenic | 25.0% |
| !! | TTCCATTTTCAATTTTGTGA+TGG | + | chr7.2:21809240-21809259 | MS.gene042447:intron | 25.0% |
| !!! | AGCTTTATTGTCTATATATC+AGG | + | chr7.2:21809644-21809663 | MS.gene042447:intron | 25.0% |
| !!! | ATCTTTTAAAACAAGAAACC+TGG | - | chr7.2:21810588-21810607 | None:intergenic | 25.0% |
| !!! | CTAATTTGGTTTTTTCTTTC+TGG | + | chr7.2:21808166-21808185 | MS.gene042447:intron | 25.0% |
| !!! | CTATTGTCAAGTTTGATTTT+TGG | + | chr7.2:21808891-21808910 | MS.gene042447:intron | 25.0% |
| !!! | TAAGGGTACAAATTTTCATT+TGG | + | chr7.2:21809180-21809199 | MS.gene042447:intron | 25.0% |
| !!! | TCAATTTTGTGATGGATAAT+TGG | + | chr7.2:21809248-21809267 | MS.gene042447:intron | 25.0% |
| !!! | TCTTTTCAAAAGTTTGTTTG+TGG | + | chr7.2:21808852-21808871 | MS.gene042447:intron | 25.0% |
| !!! | TGTTTTGAAATTTTTGTTGG+GGG | + | chr7.2:21808556-21808575 | MS.gene042447:intron | 25.0% |
| !!! | TTAAGGTTTTTTGTTCTTGA+AGG | + | chr7.2:21808399-21808418 | MS.gene042447:intron | 25.0% |
| !!! | TTTTTAACTCAATGAAGTTG+AGG | - | chr7.2:21808103-21808122 | None:intergenic | 25.0% |
| AATTTAGGGGTCTATTTAGT+TGG | + | chr7.2:21810514-21810533 | MS.gene042447:intron | 30.0% | |
| AGTAATTTATGTAGGAAGTG+GGG | + | chr7.2:21809808-21809827 | MS.gene042447:intron | 30.0% | |
| ATAAGCTGTAAAATGACATC+TGG | - | chr7.2:21809403-21809422 | None:intergenic | 30.0% | |
| ATGATTTCTACAACTCTTTC+AGG | + | chr7.2:21809953-21809972 | MS.gene042447:intron | 30.0% | |
| CCTAATAAACTAAAACCCAA+AGG | - | chr7.2:21809455-21809474 | None:intergenic | 30.0% | |
| CGAGTACAAATAAATTCCTT+TGG | + | chr7.2:21809436-21809455 | MS.gene042447:intron | 30.0% | |
| CTCTAACAAACACGAAAAAA+GGG | - | chr7.2:21808697-21808716 | None:intergenic | 30.0% | |
| CTTTGATGTCAAGTTTGAAA+CGG | - | chr7.2:21810990-21811009 | None:intergenic | 30.0% | |
| GAACATAGAATCATAGATAG+GGG | - | chr7.2:21809574-21809593 | None:intergenic | 30.0% | |
| GATGACGAAATGAAATTTAG+GGG | + | chr7.2:21810501-21810520 | MS.gene042447:intron | 30.0% | |
| GCTTTATGCTAATATTCATC+TGG | + | chr7.2:21809474-21809493 | MS.gene042447:intron | 30.0% | |
| GGAAACTTCATTAGTTGTAT+AGG | + | chr7.2:21811181-21811200 | MS.gene042447:intron | 30.0% | |
| GTTCTAACTTGACTCTAATT+TGG | + | chr7.2:21808152-21808171 | MS.gene042447:intron | 30.0% | |
| TAAGCTGTAAAATGACATCT+GGG | - | chr7.2:21809402-21809421 | None:intergenic | 30.0% | |
| TAGAGAAGTTAAATCCATGA+TGG | + | chr7.2:21808712-21808731 | MS.gene042447:intron | 30.0% | |
| TCTCTAACAAACACGAAAAA+AGG | - | chr7.2:21808698-21808717 | None:intergenic | 30.0% | |
| TCTGGTGGTATTATTCAATT+GGG | + | chr7.2:21810468-21810487 | MS.gene042447:intron | 30.0% | |
| TCTTTCAGAACTGTTATGTA+AGG | + | chr7.2:21811235-21811254 | MS.gene042447:intron | 30.0% | |
| TGGTCATGTTTCAATATTTC+CGG | + | chr7.2:21810751-21810770 | MS.gene042447:intron | 30.0% | |
| TTGAATATTTCAGACAAGGA+CGG | + | chr7.2:21808205-21808224 | MS.gene042447:intron | 30.0% | |
| TTGACATGCAGAAAAACTAT+TGG | - | chr7.2:21809002-21809021 | None:intergenic | 30.0% | |
| ! | ATAGTTTTTCTGCATGTCAA+CGG | + | chr7.2:21809002-21809021 | MS.gene042447:intron | 30.0% |
| ! | CAATGCTCTCTTATAAGTTT+TGG | - | chr7.2:21809061-21809080 | None:intergenic | 30.0% |
| ! | CAGAAAGTAAGAACTTTTGA+AGG | + | chr7.2:21809345-21809364 | MS.gene042447:intron | 30.0% |
| ! | GAAAATGTCTACATTGACTA+AGG | + | chr7.2:21809162-21809181 | MS.gene042447:intron | 30.0% |
| ! | TCTACACACATTTTGTAAAC+AGG | + | chr7.2:21810649-21810668 | MS.gene042447:intron | 30.0% |
| ! | TTTTCATAATGACCAAAACC+TGG | - | chr7.2:21809147-21809166 | None:intergenic | 30.0% |
| !! | AATTTTTCATGCATTGATGC+AGG | + | chr7.2:21811160-21811179 | MS.gene042447:intron | 30.0% |
| !!! | CCTTTGGGTTTTAGTTTATT+AGG | + | chr7.2:21809452-21809471 | MS.gene042447:intron | 30.0% |
| !!! | TCAAGTTTGATTTTTGGAGT+CGG | + | chr7.2:21808897-21808916 | MS.gene042447:intron | 30.0% |
| AACACCCCATGATTTATTTG+TGG | - | chr7.2:21808448-21808467 | None:intergenic | 35.0% | |
| AATGTCACAAATGCAGTCTT+TGG | - | chr7.2:21808779-21808798 | None:intergenic | 35.0% | |
| ACTAAGATATACTCTTCCAC+CGG | - | chr7.2:21809988-21810007 | None:intergenic | 35.0% | |
| AGTATCATTCAACTTCCTCT+CGG | - | chr7.2:21810264-21810283 | None:intergenic | 35.0% | |
| AGTTGTAGAAATCATGATCG+TGG | - | chr7.2:21809948-21809967 | None:intergenic | 35.0% | |
| ATTGAACACATTCAGATCGT+TGG | + | chr7.2:21808299-21808318 | MS.gene042447:CDS | 35.0% | |
| ATTTCTACAACTCTTTCAGG+AGG | + | chr7.2:21809956-21809975 | MS.gene042447:intron | 35.0% | |
| CAAAATGTGTGTAGAATCAG+TGG | - | chr7.2:21810644-21810663 | None:intergenic | 35.0% | |
| CATGAATTCTTCTCATTCTC+TGG | + | chr7.2:21808272-21808291 | MS.gene042447:CDS | 35.0% | |
| CGTTTCAAACTTGACATCAA+AGG | + | chr7.2:21810988-21811007 | MS.gene042447:CDS | 35.0% | |
| GTAATTTATGTAGGAAGTGG+GGG | + | chr7.2:21809809-21809828 | MS.gene042447:intron | 35.0% | |
| GTCAAATTAATACAGCCACA+AGG | - | chr7.2:21810812-21810831 | None:intergenic | 35.0% | |
| GTCTGGTGGTATTATTCAAT+TGG | + | chr7.2:21810467-21810486 | MS.gene042447:intron | 35.0% | |
| GTTAAATTGTTACAGTCTGG+TGG | + | chr7.2:21810453-21810472 | MS.gene042447:intron | 35.0% | |
| GTTCTTGAAGGTAAATTTGG+AGG | + | chr7.2:21808411-21808430 | MS.gene042447:intron | 35.0% | |
| TCAAACTTGACATCAAAGGT+TGG | + | chr7.2:21810992-21811011 | MS.gene042447:intron | 35.0% | |
| TCTTAGTAAAGCACAAGATG+TGG | + | chr7.2:21810001-21810020 | MS.gene042447:CDS | 35.0% | |
| TGTTTCAATATTTCCGGAGT+AGG | + | chr7.2:21810757-21810776 | MS.gene042447:intron | 35.0% | |
| TTAACTCAATGAAGTTGAGG+AGG | - | chr7.2:21808100-21808119 | None:intergenic | 35.0% | |
| TTGAACACATTCAGATCGTT+GGG | + | chr7.2:21808300-21808319 | MS.gene042447:CDS | 35.0% | |
| TTGAAGGTAAATTTGGAGGA+GGG | + | chr7.2:21808415-21808434 | MS.gene042447:intron | 35.0% | |
| ! | AACATAATGGGACAGTTACT+AGG | + | chr7.2:21808529-21808548 | MS.gene042447:intron | 35.0% |
| ! | AGTTCTTTTGACAAGAGAGT+TGG | + | chr7.2:21810131-21810150 | MS.gene042447:CDS | 35.0% |
| ! | TTTGCTTGTTGCAGAGAATA+TGG | + | chr7.2:21808749-21808768 | MS.gene042447:intron | 35.0% |
| ! | TTTTACCTCAGTATTTGACG+CGG | - | chr7.2:21809871-21809890 | None:intergenic | 35.0% |
| !!! | AGTTTTGGTTGTGAAGAAGT+CGG | - | chr7.2:21809046-21809065 | None:intergenic | 35.0% |
| !!! | TTGATTTTTGGAGTCGGTTT+GGG | + | chr7.2:21808903-21808922 | MS.gene042447:intron | 35.0% |
| !!! | TTTGATTTTTGGAGTCGGTT+TGG | + | chr7.2:21808902-21808921 | MS.gene042447:intron | 35.0% |
| AAAACAAGCAGGTTTGGACT+TGG | + | chr7.2:21810296-21810315 | MS.gene042447:intron | 40.0% | |
| AAACAAGCAGGTTTGGACTT+GGG | + | chr7.2:21810297-21810316 | MS.gene042447:intron | 40.0% | |
| AACAGAAGGTAATCTAAGCC+AGG | + | chr7.2:21809126-21809145 | MS.gene042447:intron | 40.0% | |
| AACTATGCTGGCAAAAGGTT+CGG | + | chr7.2:21810028-21810047 | MS.gene042447:CDS | 40.0% | |
| AGAAGCTCCCATAAAACAGA+AGG | + | chr7.2:21809112-21809131 | MS.gene042447:intron | 40.0% | |
| AGATGTGGTTACAACTATGC+TGG | + | chr7.2:21810016-21810035 | MS.gene042447:CDS | 40.0% | |
| CAGATGCTGCAATGAAGATA+AGG | - | chr7.2:21810335-21810354 | None:intergenic | 40.0% | |
| CTAAGATATACTCTTCCACC+GGG | - | chr7.2:21809987-21810006 | None:intergenic | 40.0% | |
| CTGACAGAGAAATTGACAGT+TGG | + | chr7.2:21810155-21810174 | MS.gene042447:CDS | 40.0% | |
| CTTCACTTTCTCATTCACCA+CGG | - | chr7.2:21810186-21810205 | None:intergenic | 40.0% | |
| CTTGAAGGTAAATTTGGAGG+AGG | + | chr7.2:21808414-21808433 | MS.gene042447:intron | 40.0% | |
| GAATGAGAAAGTGAAGTCTG+TGG | + | chr7.2:21810190-21810209 | MS.gene042447:CDS | 40.0% | |
| GAGAGGAAGTTGAATGATAC+TGG | + | chr7.2:21810263-21810282 | MS.gene042447:CDS | 40.0% | |
| GTATAGGCCAGAATTTCAGA+AGG | + | chr7.2:21811197-21811216 | MS.gene042447:intron | 40.0% | |
| GTATCATTTCTCACCTACTC+CGG | - | chr7.2:21810773-21810792 | None:intergenic | 40.0% | |
| GTTAACTGGTGCATTTAGCA+AGG | + | chr7.2:21810910-21810929 | MS.gene042447:CDS | 40.0% | |
| GTTACAACTATGCTGGCAAA+AGG | + | chr7.2:21810023-21810042 | MS.gene042447:CDS | 40.0% | |
| TCACATATACATGGACCTTG+TGG | + | chr7.2:21810794-21810813 | MS.gene042447:intron | 40.0% | |
| TCGAGAGAACTTATATCGAG+TGG | + | chr7.2:21811077-21811096 | MS.gene042447:intron | 40.0% | |
| TGTTGGGGGTTACATATGTA+GGG | + | chr7.2:21808570-21808589 | MS.gene042447:intron | 40.0% | |
| TTCAGATCTAGCTACTGAGA+GGG | + | chr7.2:21808244-21808263 | MS.gene042447:CDS | 40.0% | |
| TTGTTGGGGGTTACATATGT+AGG | + | chr7.2:21808569-21808588 | MS.gene042447:intron | 40.0% | |
| TTTCAGAAGGTCTCAAGTGA+AGG | + | chr7.2:21811210-21811229 | MS.gene042447:intron | 40.0% | |
| TTTCAGATCTAGCTACTGAG+AGG | + | chr7.2:21808243-21808262 | MS.gene042447:CDS | 40.0% | |
| TTTCGTACCAATTAGGCCAA+TGG | + | chr7.2:21810731-21810750 | MS.gene042447:intron | 40.0% | |
| ! | AAAGTTTGTTTGTGGAGCTG+TGG | + | chr7.2:21808860-21808879 | MS.gene042447:intron | 40.0% |
| ! | AACATGACCATTGGCCTAAT+TGG | - | chr7.2:21810741-21810760 | None:intergenic | 40.0% |
| ! | AGGTAATCTAAGCCAGGTTT+TGG | + | chr7.2:21809132-21809151 | MS.gene042447:intron | 40.0% |
| !! | CTTGAGACCTTCTGAAATTC+TGG | - | chr7.2:21811207-21811226 | None:intergenic | 40.0% |
| !!! | TCCAAACCTGCTTGTTTTGA+CGG | - | chr7.2:21810294-21810313 | None:intergenic | 40.0% |
| AACGCAATTTCAAGCGCTCT+GGG | - | chr7.2:21808809-21808828 | None:intergenic | 45.0% | |
| AACTGGTGCATTTAGCAAGG+TGG | + | chr7.2:21810913-21810932 | MS.gene042447:CDS | 45.0% | |
| AAGTCCAGTCGAGAACTATG+TGG | + | chr7.2:21809698-21809717 | MS.gene042447:CDS | 45.0% | |
| AAGTGAAGTCTGTGGATCAG+AGG | + | chr7.2:21810198-21810217 | MS.gene042447:CDS | 45.0% | |
| ACACATTCAGATCGTTGGGT+TGG | + | chr7.2:21808304-21808323 | MS.gene042447:intron | 45.0% | |
| ACTGACCTTTGCAGATGCAT+TGG | - | chr7.2:21810114-21810133 | None:intergenic | 45.0% | |
| ATCGTGGTTAACTGCTCATC+AGG | - | chr7.2:21809932-21809951 | None:intergenic | 45.0% | |
| ATGTGACTGCTGGAACAACA+TGG | + | chr7.2:21810888-21810907 | MS.gene042447:CDS | 45.0% | |
| CACAACATGAGCAACCATCA+TGG | - | chr7.2:21808729-21808748 | None:intergenic | 45.0% | |
| GCTGGAACAACATGGTTAAC+TGG | + | chr7.2:21810896-21810915 | MS.gene042447:CDS | 45.0% | |
| TAACGCAATTTCAAGCGCTC+TGG | - | chr7.2:21808810-21808829 | None:intergenic | 45.0% | |
| TGCATTTAGCAAGGTGGCAA+GGG | + | chr7.2:21810919-21810938 | MS.gene042447:CDS | 45.0% | |
| TTTGCCACATAGTTCTCGAC+TGG | - | chr7.2:21809705-21809724 | None:intergenic | 45.0% | |
| !! | GCAAAACGCTTGTTTTCACC+AGG | + | chr7.2:21810567-21810586 | MS.gene042447:intron | 45.0% |
| !!! | AAAATTTTATATTTGTATTT+TGG | - | chr7.2:21809895-21809914 | None:intergenic | 5.0% |
| AGATGCCGCGTCAAATACTG+AGG | + | chr7.2:21809863-21809882 | MS.gene042447:CDS | 50.0% | |
| ATTGACAGTTGGACTCTCCG+TGG | + | chr7.2:21810166-21810185 | MS.gene042447:CDS | 50.0% | |
| CAGCAATATTTGCAGCCGAG+AGG | + | chr7.2:21810246-21810265 | MS.gene042447:CDS | 50.0% | |
| CTCTTTCAGGAGGAGAAACC+CGG | + | chr7.2:21809966-21809985 | MS.gene042447:intron | 50.0% | |
| GACTGCCAATGCATCTGCAA+AGG | + | chr7.2:21810106-21810125 | MS.gene042447:CDS | 50.0% | |
| GATCAGCCGTCAAAACAAGC+AGG | + | chr7.2:21810285-21810304 | MS.gene042447:CDS | 50.0% | |
| GCATGCAGATATGTGACTGC+TGG | + | chr7.2:21810878-21810897 | MS.gene042447:intron | 50.0% | |
| GCCGTCAAAACAAGCAGGTT+TGG | + | chr7.2:21810290-21810309 | MS.gene042447:intron | 50.0% | |
| GTACAGCTACCTGCATCTCA+CGG | - | chr7.2:21809728-21809747 | None:intergenic | 50.0% | |
| GTATTTGACGCGGCATCTTC+AGG | - | chr7.2:21809861-21809880 | None:intergenic | 50.0% | |
| GTGCATTTAGCAAGGTGGCA+AGG | + | chr7.2:21810918-21810937 | MS.gene042447:CDS | 50.0% | |
| TGTGGCAAACCGTGAGATGC+AGG | + | chr7.2:21809716-21809735 | MS.gene042447:CDS | 55.0% | |
| TTTAGCAAGGTGGCAAGGGC+TGG | + | chr7.2:21810923-21810942 | MS.gene042447:CDS | 55.0% | |
| TTTCAGGAGGAGAAACCCGG+TGG | + | chr7.2:21809969-21809988 | MS.gene042447:intron | 55.0% | |
| GCAAGGGCTGGAAACGTTGC+TGG | + | chr7.2:21810935-21810954 | MS.gene042447:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 21808084 | 21811397 | 21808084 | ID=MS.gene042447 |
| chr7.2 | mRNA | 21808084 | 21811397 | 21808084 | ID=MS.gene042447.t1;Parent=MS.gene042447 |
| chr7.2 | exon | 21808084 | 21808089 | 21808084 | ID=MS.gene042447.t1.exon1;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21808084 | 21808089 | 21808084 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21808218 | 21808321 | 21808218 | ID=MS.gene042447.t1.exon2;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21808218 | 21808321 | 21808218 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21808763 | 21808838 | 21808763 | ID=MS.gene042447.t1.exon3;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21808763 | 21808838 | 21808763 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21809666 | 21809737 | 21809666 | ID=MS.gene042447.t1.exon4;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21809666 | 21809737 | 21809666 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21809822 | 21809884 | 21809822 | ID=MS.gene042447.t1.exon5;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21809822 | 21809884 | 21809822 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21809975 | 21810306 | 21809975 | ID=MS.gene042447.t1.exon6;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21809975 | 21810306 | 21809975 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21810886 | 21811009 | 21810886 | ID=MS.gene042447.t1.exon7;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21810886 | 21811009 | 21810886 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| chr7.2 | exon | 21811371 | 21811397 | 21811371 | ID=MS.gene042447.t1.exon8;Parent=MS.gene042447.t1 |
| chr7.2 | CDS | 21811371 | 21811397 | 21811371 | ID=cds.MS.gene042447.t1;Parent=MS.gene042447.t1 |
| Gene Sequence |
| Protein sequence |
