Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051314.t1 | XP_024640259.1 | 92.6 | 282 | 20 | 1 | 1 | 281 | 1 | 282 | 3.90E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051314.t1 | Q9LFD5 | 60.9 | 258 | 87 | 5 | 3 | 255 | 5 | 253 | 1.9e-57 | 224.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051314.t1 | A0A396HQQ7 | 92.6 | 282 | 20 | 1 | 1 | 281 | 1 | 282 | 2.8e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene042447 | MS.gene051314 | PPI |
| MS.gene08184 | MS.gene051314 | PPI |
| MS.gene41753 | MS.gene051314 | PPI |
| MS.gene067833 | MS.gene051314 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051314.t1 | MTR_5g029640 | 95.683 | 278 | 11 | 1 | 1 | 277 | 1 | 278 | 0.0 | 529 |
| MS.gene051314.t1 | MTR_5g029640 | 95.513 | 156 | 7 | 0 | 107 | 262 | 279 | 434 | 3.84e-96 | 291 |
| MS.gene051314.t1 | MTR_8g066460 | 79.359 | 281 | 56 | 1 | 1 | 281 | 1 | 279 | 9.48e-158 | 440 |
| MS.gene051314.t1 | MTR_8g066460 | 79.004 | 281 | 57 | 1 | 1 | 281 | 17 | 295 | 1.20e-156 | 438 |
| MS.gene051314.t1 | MTR_1g032860 | 56.977 | 258 | 99 | 3 | 3 | 253 | 31 | 283 | 1.92e-94 | 281 |
| MS.gene051314.t1 | MTR_8g105910 | 56.274 | 263 | 104 | 2 | 3 | 258 | 31 | 289 | 4.11e-94 | 280 |
| MS.gene051314.t1 | MTR_7g086080 | 45.276 | 254 | 121 | 3 | 1 | 238 | 1 | 252 | 1.30e-63 | 201 |
| MS.gene051314.t1 | MTR_5g039130 | 39.419 | 241 | 125 | 3 | 6 | 230 | 10 | 245 | 3.84e-47 | 158 |
| MS.gene051314.t1 | MTR_7g010100 | 33.077 | 260 | 126 | 8 | 5 | 230 | 7 | 252 | 4.67e-32 | 119 |
| MS.gene051314.t1 | MTR_5g038107 | 83.871 | 62 | 10 | 0 | 1 | 62 | 1 | 62 | 6.03e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051314.t1 | AT4G17720 | 68.773 | 269 | 81 | 2 | 1 | 266 | 1 | 269 | 1.62e-125 | 360 |
| MS.gene051314.t1 | AT5G46870 | 64.643 | 280 | 90 | 3 | 1 | 271 | 1 | 280 | 3.28e-113 | 328 |
| MS.gene051314.t1 | AT5G46870 | 64.643 | 280 | 90 | 3 | 1 | 271 | 1 | 280 | 3.28e-113 | 328 |
| MS.gene051314.t1 | AT5G16840 | 63.248 | 234 | 79 | 4 | 3 | 236 | 5 | 231 | 2.06e-98 | 289 |
| MS.gene051314.t1 | AT5G16840 | 62.288 | 236 | 81 | 4 | 1 | 236 | 1 | 228 | 3.91e-98 | 288 |
| MS.gene051314.t1 | AT5G16840 | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 2.25e-97 | 286 |
| MS.gene051314.t1 | AT1G67950 | 53.942 | 241 | 101 | 2 | 3 | 243 | 28 | 258 | 2.71e-82 | 249 |
| MS.gene051314.t1 | AT1G67950 | 53.689 | 244 | 102 | 3 | 3 | 246 | 28 | 260 | 1.33e-81 | 247 |
| MS.gene051314.t1 | AT1G67950 | 54.357 | 241 | 99 | 3 | 3 | 243 | 29 | 258 | 1.74e-81 | 247 |
| MS.gene051314.t1 | AT5G32450 | 47.154 | 246 | 115 | 2 | 4 | 234 | 5 | 250 | 1.50e-65 | 206 |
| MS.gene051314.t1 | AT1G67950 | 52.153 | 209 | 89 | 3 | 35 | 243 | 1 | 198 | 8.87e-64 | 200 |
| MS.gene051314.t1 | AT1G14340 | 38.559 | 236 | 130 | 2 | 6 | 230 | 9 | 240 | 6.74e-41 | 142 |
| MS.gene051314.t1 | AT3G01210 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.35e-32 | 119 |
| MS.gene051314.t1 | AT3G01210 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.35e-32 | 119 |
Find 64 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5.4:+19936967 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5.4:-19937229 | MS.gene051314:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5.4:+19937143 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5.4:-19936929 | MS.gene051314:CDS |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5.4:+19937334 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5.4:-19937399 | MS.gene051314:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5.4:-19937135 | MS.gene051314:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5.4:-19937117 | MS.gene051314:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5.4:-19937285 | MS.gene051314:CDS |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5.4:+19937596 | None:intergenic |
| AACTGCTTATGTTACCTTCA+AGG | 0.380884 | 5.4:-19939172 | MS.gene051314:CDS |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5.4:+19939395 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5.4:-19937124 | MS.gene051314:CDS |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5.4:-19937588 | MS.gene051314:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5.4:-19937118 | MS.gene051314:CDS |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5.4:-19937125 | MS.gene051314:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5.4:+19937395 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5.4:-19939391 | MS.gene051314:CDS |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5.4:-19939390 | MS.gene051314:CDS |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5.4:-19937439 | MS.gene051314:CDS |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5.4:+19936933 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5.4:-19937055 | MS.gene051314:CDS |
| ACAGGTGAAACCAGGACATC+AGG | 0.473780 | 5.4:+19937578 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5.4:-19936928 | MS.gene051314:CDS |
| TGTTACCTTCAAGGATTCAC+AGG | 0.482190 | 5.4:-19939163 | MS.gene051314:CDS |
| AGCTCCCTGTGAATCCTTGA+AGG | 0.485851 | 5.4:+19939158 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5.4:+19937404 | None:intergenic |
| TTCCTTGGGAGCAACTGATC+GGG | 0.493040 | 5.4:-19939376 | MS.gene051314:CDS |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5.4:+19936916 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5.4:+19936928 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5.4:-19936946 | MS.gene051314:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5.4:+19936922 | None:intergenic |
| GTCCCGATCAGTTGCTCCCA+AGG | 0.520488 | 5.4:+19939374 | None:intergenic |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5.4:+19937588 | None:intergenic |
| TTTCCTTGGGAGCAACTGAT+CGG | 0.539904 | 5.4:-19939377 | MS.gene051314:CDS |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5.4:-19937445 | MS.gene051314:CDS |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5.4:+19937453 | None:intergenic |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5.4:-19937134 | MS.gene051314:CDS |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5.4:-19937471 | MS.gene051314:CDS |
| TGAGACTGCAGTGTTGCTAT+CGG | 0.569142 | 5.4:-19939136 | MS.gene051314:intron |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5.4:-19937078 | MS.gene051314:CDS |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5.4:-19937244 | MS.gene051314:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5.4:+19937621 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5.4:-19937449 | MS.gene051314:CDS |
| AAAATCAGCATTTGCTGCTG+CGG | 0.576733 | 5.4:-19937193 | MS.gene051314:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5.4:-19937621 | MS.gene051314:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5.4:-19937411 | MS.gene051314:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5.4:-19937171 | MS.gene051314:CDS |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5.4:+19937317 | None:intergenic |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5.4:-19937004 | MS.gene051314:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5.4:-19937025 | MS.gene051314:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5.4:+19937407 | None:intergenic |
| ACAGGCTCACAGGTGAAACC+AGG | 0.611215 | 5.4:+19937570 | None:intergenic |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5.4:-19939323 | MS.gene051314:CDS |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5.4:+19937155 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5.4:-19937279 | MS.gene051314:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5.4:+19937110 | None:intergenic |
| GTTACCTTCAAGGATTCACA+GGG | 0.642161 | 5.4:-19939162 | MS.gene051314:CDS |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5.4:-19937636 | MS.gene051314:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5.4:+19937581 | None:intergenic |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5.4:-19939320 | MS.gene051314:intron |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5.4:-19937468 | MS.gene051314:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5.4:-19937133 | MS.gene051314:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5.4:-19937421 | MS.gene051314:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAATTGTGTATAATATA+AGG | - | chr5.4:19937134-19937153 | MS.gene051314:CDS | 10.0% |
| !! | ATATATATATATAATCACTA+CGG | - | chr5.4:19938067-19938086 | MS.gene051314:intron | 10.0% |
| !!! | ATATTATACACAATTTTATT+TGG | + | chr5.4:19937133-19937152 | None:intergenic | 10.0% |
| !!! | ATGTTATATTTGTTTTATTT+GGG | - | chr5.4:19938277-19938296 | MS.gene051314:intron | 10.0% |
| !! | AACAATAATGACAAATTATA+TGG | + | chr5.4:19938665-19938684 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | + | chr5.4:19938537-19938556 | None:intergenic | 15.0% |
| !! | AATTGAAGATAATACTAATA+TGG | + | chr5.4:19938589-19938608 | None:intergenic | 15.0% |
| !! | AGATTGAATATGAATATAAA+TGG | - | chr5.4:19939023-19939042 | MS.gene051314:intron | 15.0% |
| !! | ATTGAAGATAATACTAATAT+GGG | + | chr5.4:19938588-19938607 | None:intergenic | 15.0% |
| !! | CAAAAATTTACATGTTTATA+AGG | + | chr5.4:19939468-19939487 | None:intergenic | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | + | chr5.4:19937750-19937769 | None:intergenic | 15.0% |
| !! | TATATATATATAATCACTAC+GGG | - | chr5.4:19938068-19938087 | MS.gene051314:intron | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | + | chr5.4:19937751-19937770 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | - | chr5.4:19937971-19937990 | MS.gene051314:intron | 15.0% |
| !!! | CATGTTATATTTGTTTTATT+TGG | - | chr5.4:19938276-19938295 | MS.gene051314:intron | 15.0% |
| !!! | TGTTATATTTGTTTTATTTG+GGG | - | chr5.4:19938278-19938297 | MS.gene051314:intron | 15.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | - | chr5.4:19937489-19937508 | MS.gene051314:intron | 20.0% |
| !! | TAACAAAGTTTATAAACGAA+AGG | + | chr5.4:19937718-19937737 | None:intergenic | 20.0% |
| !! | TATAAAATTACAGGTAAACA+AGG | + | chr5.4:19937365-19937384 | None:intergenic | 20.0% |
| !! | TATATATATATGAAACTTCC+AGG | + | chr5.4:19938183-19938202 | None:intergenic | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | - | chr5.4:19939026-19939045 | MS.gene051314:intron | 20.0% |
| !!! | ATAAACATGTAAATTTTTGC+AGG | - | chr5.4:19939469-19939488 | MS.gene051314:intron | 20.0% |
| !!! | ATGTTATGATTCTTTTAACT+TGG | - | chr5.4:19937323-19937342 | MS.gene051314:CDS | 20.0% |
| ! | AATAAGAGTTTCAGTAATGT+AGG | + | chr5.4:19938840-19938859 | None:intergenic | 25.0% |
| ! | ACCTAAAGATGATAAACATA+AGG | - | chr5.4:19937196-19937215 | MS.gene051314:CDS | 25.0% |
| ! | ACCTTATGTTTATCATCTTT+AGG | + | chr5.4:19937200-19937219 | None:intergenic | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | - | chr5.4:19937435-19937454 | MS.gene051314:CDS | 25.0% |
| ! | ATAGAAACATCTTCTAACAA+TGG | - | chr5.4:19938967-19938986 | MS.gene051314:intron | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | - | chr5.4:19938014-19938033 | MS.gene051314:intron | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | + | chr5.4:19939424-19939443 | None:intergenic | 25.0% |
| ! | CATTAGAATAATACAATCAG+AGG | + | chr5.4:19939188-19939207 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | - | chr5.4:19937434-19937453 | MS.gene051314:CDS | 25.0% |
| ! | TGATATCATATCATCATCAT+AGG | + | chr5.4:19937100-19937119 | None:intergenic | 25.0% |
| ! | TGTCAAAATAATAGTGTTCA+GGG | - | chr5.4:19938111-19938130 | MS.gene051314:intron | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | - | chr5.4:19939200-19939219 | MS.gene051314:intron | 25.0% |
| ! | TTGTCAAAATAATAGTGTTC+AGG | - | chr5.4:19938110-19938129 | MS.gene051314:intron | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | - | chr5.4:19937615-19937634 | MS.gene051314:CDS | 25.0% |
| !! | TTTAGGTAACCTCTTTTAAA+AGG | + | chr5.4:19937183-19937202 | None:intergenic | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | - | chr5.4:19938383-19938402 | MS.gene051314:intron | 25.0% |
| !!! | ATGACTTATCCTTTTAAAAG+AGG | - | chr5.4:19937171-19937190 | MS.gene051314:CDS | 25.0% |
| !!! | ATTTTTAGACATTGCATTAG+CGG | - | chr5.4:19936980-19936999 | MS.gene051314:CDS | 25.0% |
| !!! | CTTAAGTGTCACTTAATTTA+GGG | + | chr5.4:19937885-19937904 | None:intergenic | 25.0% |
| AAACACAATGCAGTATTAAC+GGG | - | chr5.4:19938779-19938798 | MS.gene051314:intron | 30.0% | |
| ACATTGCATATGTTGAACTA+CGG | - | chr5.4:19937639-19937658 | MS.gene051314:CDS | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | - | chr5.4:19939126-19939145 | MS.gene051314:intron | 30.0% | |
| ATGTGAAACTGCGTTATATT+TGG | + | chr5.4:19939297-19939316 | None:intergenic | 30.0% | |
| CATATTCAATCTTGTACTGA+AGG | + | chr5.4:19939015-19939034 | None:intergenic | 30.0% | |
| CCTAAATTAAGTGACACTTA+AGG | - | chr5.4:19937883-19937902 | MS.gene051314:intron | 30.0% | |
| GAAACACAATGCAGTATTAA+CGG | - | chr5.4:19938778-19938797 | MS.gene051314:intron | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | - | chr5.4:19938013-19938032 | MS.gene051314:intron | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | + | chr5.4:19939425-19939444 | None:intergenic | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | + | chr5.4:19939822-19939841 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | - | chr5.4:19939907-19939926 | MS.gene051314:intron | 30.0% | |
| TCTCATAAATCACTATCTAG+AGG | - | chr5.4:19938684-19938703 | MS.gene051314:intron | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | - | chr5.4:19939433-19939452 | MS.gene051314:intron | 30.0% | |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | - | chr5.4:19937616-19937635 | MS.gene051314:CDS | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | - | chr5.4:19937614-19937633 | MS.gene051314:CDS | 30.0% |
| ! | TATTCCGCTATAGCATTTTA+GGG | - | chr5.4:19937004-19937023 | MS.gene051314:CDS | 30.0% |
| ! | TGAAGGACTATCGAAATTTT+AGG | + | chr5.4:19938998-19939017 | None:intergenic | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | + | chr5.4:19937559-19937578 | None:intergenic | 30.0% |
| ! | TGGAGGAGTATATATTAGTA+GGG | - | chr5.4:19938403-19938422 | MS.gene051314:intron | 30.0% |
| !! | CCTTAAGTGTCACTTAATTT+AGG | + | chr5.4:19937886-19937905 | None:intergenic | 30.0% |
| !!! | TTCTTGCTCCTGTTTTTAAA+AGG | - | chr5.4:19937238-19937257 | MS.gene051314:CDS | 30.0% |
| AAAAACAGGAGCAAGAAAAG+AGG | + | chr5.4:19937235-19937254 | None:intergenic | 35.0% | |
| AAATCACTATCTAGAGGTCA+AGG | - | chr5.4:19938690-19938709 | MS.gene051314:intron | 35.0% | |
| AACGCAGTTTCACATATTTC+AGG | - | chr5.4:19939302-19939321 | MS.gene051314:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | - | chr5.4:19937790-19937809 | MS.gene051314:intron | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | - | chr5.4:19939827-19939846 | MS.gene051314:intron | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | + | chr5.4:19939103-19939122 | None:intergenic | 35.0% | |
| ACGCAGTTTCACATATTTCA+GGG | - | chr5.4:19939303-19939322 | MS.gene051314:intron | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | - | chr5.4:19939733-19939752 | MS.gene051314:intron | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | - | chr5.4:19939828-19939847 | MS.gene051314:intron | 35.0% | |
| ATATGGGACATGCTAATTAG+TGG | + | chr5.4:19938572-19938591 | None:intergenic | 35.0% | |
| CAAGGTAAAACTACAGGATT+TGG | - | chr5.4:19938708-19938727 | MS.gene051314:intron | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | - | chr5.4:19939660-19939679 | MS.gene051314:intron | 35.0% | |
| CCAGGAAAAAACTTCGAATT+GGG | + | chr5.4:19938165-19938184 | None:intergenic | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | + | chr5.4:19939102-19939121 | None:intergenic | 35.0% | |
| GAAAAAACTTCGAATTGGGA+GGG | + | chr5.4:19938161-19938180 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | - | chr5.4:19939125-19939144 | MS.gene051314:intron | 35.0% | |
| GAGGATAGCGTATTAAGTAA+TGG | + | chr5.4:19937863-19937882 | None:intergenic | 35.0% | |
| GTAAGTGAAAGTAAAACTCC+TGG | - | chr5.4:19939491-19939510 | MS.gene051314:intron | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | + | chr5.4:19938774-19938793 | None:intergenic | 35.0% | |
| TATGGGACATGCTAATTAGT+GGG | + | chr5.4:19938571-19938590 | None:intergenic | 35.0% | |
| TCCAAAAGGCTGAATATTTC+AGG | + | chr5.4:19938760-19938779 | None:intergenic | 35.0% | |
| TCCAGGAAAAAACTTCGAAT+TGG | + | chr5.4:19938166-19938185 | None:intergenic | 35.0% | |
| TGAATGTAGATAGGTACTCA+TGG | - | chr5.4:19937498-19937517 | MS.gene051314:intron | 35.0% | |
| TTCTTGTCAGTACGCTATAA+TGG | + | chr5.4:19937426-19937445 | None:intergenic | 35.0% | |
| TTTCTATCCAGAGCAGTAAA+AGG | + | chr5.4:19938954-19938973 | None:intergenic | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | + | chr5.4:19939570-19939589 | None:intergenic | 35.0% | |
| ! | AACTTTTCCTTTTACTGCTC+TGG | - | chr5.4:19938944-19938963 | MS.gene051314:intron | 35.0% |
| ! | AGGACTATCGAAATTTTAGG+CGG | + | chr5.4:19938995-19939014 | None:intergenic | 35.0% |
| ! | ATTCCGCTATAGCATTTTAG+GGG | - | chr5.4:19937005-19937024 | MS.gene051314:CDS | 35.0% |
| ! | CTATTCCGCTATAGCATTTT+AGG | - | chr5.4:19937003-19937022 | MS.gene051314:CDS | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | - | chr5.4:19938402-19938421 | MS.gene051314:intron | 35.0% |
| ! | GGGCATTTTGCTTTAATAGT+CGG | - | chr5.4:19937455-19937474 | MS.gene051314:CDS | 35.0% |
| ! | TGCAAGTAAGTAGGCTATTT+TGG | - | chr5.4:19939442-19939461 | MS.gene051314:intron | 35.0% |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | - | chr5.4:19939868-19939887 | MS.gene051314:intron | 35.0% |
| ! | TTCACTAGTCTCTCTATTTG+TGG | - | chr5.4:19938869-19938888 | MS.gene051314:intron | 35.0% |
| !! | AAGTGTCACTTAATTTAGGG+AGG | + | chr5.4:19937882-19937901 | None:intergenic | 35.0% |
| !! | CGTGTGTTCCTTTTAAAAAC+AGG | + | chr5.4:19937249-19937268 | None:intergenic | 35.0% |
| !! | GTCATTTAATTTGTGACTGG+AGG | - | chr5.4:19938386-19938405 | MS.gene051314:intron | 35.0% |
| !! | TGTTCCATAACGGATTACAT+TGG | - | chr5.4:19938734-19938753 | MS.gene051314:intron | 35.0% |
| !!! | TTATTTTGACAACGTCGATC+TGG | + | chr5.4:19938102-19938121 | None:intergenic | 35.0% |
| AAAGTCAGCAACGTTTCCTT+GGG | - | chr5.4:19937572-19937591 | MS.gene051314:intron | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | - | chr5.4:19939149-19939168 | MS.gene051314:CDS | 40.0% | |
| ACTCTCAATAGCGATATCTG+AGG | + | chr5.4:19938631-19938650 | None:intergenic | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | - | chr5.4:19939150-19939169 | MS.gene051314:CDS | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | - | chr5.4:19938702-19938721 | MS.gene051314:intron | 40.0% | |
| AGTGAAAGTAAAACTCCTGG+TGG | - | chr5.4:19939494-19939513 | MS.gene051314:intron | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | - | chr5.4:19937666-19937685 | MS.gene051314:intron | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | - | chr5.4:19939099-19939118 | MS.gene051314:intron | 40.0% | |
| CTCTATTTGTGGAGACACAT+TGG | - | chr5.4:19938880-19938899 | MS.gene051314:intron | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | - | chr5.4:19939683-19939702 | MS.gene051314:intron | 40.0% | |
| CTTGGGCTTAGTGAGAAAAT+AGG | - | chr5.4:19939677-19939696 | MS.gene051314:intron | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | - | chr5.4:19939829-19939848 | MS.gene051314:intron | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | - | chr5.4:19939718-19939737 | MS.gene051314:intron | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | - | chr5.4:19939659-19939678 | MS.gene051314:intron | 40.0% | |
| GGAAAAAACTTCGAATTGGG+AGG | + | chr5.4:19938162-19938181 | None:intergenic | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | - | chr5.4:19939958-19939977 | MS.gene051314:intron | 40.0% | |
| GTTACCTTCAAGGATTCACA+GGG | - | chr5.4:19937800-19937819 | MS.gene051314:intron | 40.0% | |
| TAAAGTCAGCAACGTTTCCT+TGG | - | chr5.4:19937571-19937590 | MS.gene051314:intron | 40.0% | |
| TAGCGATATCTGAGGACAAT+TGG | + | chr5.4:19938623-19938642 | None:intergenic | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | - | chr5.4:19939118-19939137 | MS.gene051314:intron | 40.0% | |
| TATAATCACTACGGGCCATA+TGG | - | chr5.4:19938076-19938095 | MS.gene051314:intron | 40.0% | |
| TGTTACCTTCAAGGATTCAC+AGG | - | chr5.4:19937799-19937818 | MS.gene051314:intron | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | - | chr5.4:19937642-19937661 | MS.gene051314:intron | 40.0% | |
| ! | AAAATCAGCATTTGCTGCTG+CGG | - | chr5.4:19939769-19939788 | MS.gene051314:intron | 40.0% |
| ! | AATTACAGAGGGTCTAAGAC+AGG | + | chr5.4:19939413-19939432 | None:intergenic | 40.0% |
| ! | GATTTGGTCGTGTTCCATAA+CGG | - | chr5.4:19938724-19938743 | MS.gene051314:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | - | chr5.4:19938756-19938775 | MS.gene051314:intron | 40.0% |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | + | chr5.4:19939673-19939692 | None:intergenic | 40.0% |
| ! | TTCCGCTATAGCATTTTAGG+GGG | - | chr5.4:19937006-19937025 | MS.gene051314:CDS | 40.0% |
| !! | GGAAACGTTGCTGACTTTAA+CGG | + | chr5.4:19937570-19937589 | None:intergenic | 40.0% |
| !!! | CCCAATTCGAAGTTTTTTCC+TGG | - | chr5.4:19938162-19938181 | MS.gene051314:intron | 40.0% |
| AACAGATGCAACTGTTGCTG+AGG | + | chr5.4:19939648-19939667 | None:intergenic | 45.0% | |
| ACAGGAGCAAGAAAAGAGGA+AGG | + | chr5.4:19937231-19937250 | None:intergenic | 45.0% | |
| CAGGCCAATGTAATCCGTTA+TGG | + | chr5.4:19938741-19938760 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | + | chr5.4:19939344-19939363 | None:intergenic | 45.0% | |
| CTATTCCACAATCAGACACG+TGG | + | chr5.4:19937070-19937089 | None:intergenic | 45.0% | |
| CTGAGGCTTTCGATGATAAC+TGG | + | chr5.4:19939631-19939650 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | + | chr5.4:19939810-19939829 | None:intergenic | 45.0% | |
| GACCCCCTAAAATGCTATAG+CGG | + | chr5.4:19937011-19937030 | None:intergenic | 45.0% | |
| TAATAGTGTTCAGGGCCTAG+CGG | - | chr5.4:19938119-19938138 | MS.gene051314:intron | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | + | chr5.4:19939163-19939182 | None:intergenic | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | - | chr5.4:19939144-19939163 | MS.gene051314:CDS | 45.0% | |
| TTTCCTTGGGAGCAACTGAT+CGG | - | chr5.4:19937585-19937604 | MS.gene051314:CDS | 45.0% | |
| ! | CCTGTCGGTTACAATAACTC+TGG | - | chr5.4:19939341-19939360 | MS.gene051314:CDS | 45.0% |
| ! | CGAAAGGACTCTAAGAGAAG+TGG | + | chr5.4:19937702-19937721 | None:intergenic | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | - | chr5.4:19939563-19939582 | MS.gene051314:intron | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | - | chr5.4:19939884-19939903 | MS.gene051314:intron | 45.0% |
| ! | TGAGACTGCAGTGTTGCTAT+CGG | - | chr5.4:19937826-19937845 | MS.gene051314:intron | 45.0% |
| !! | GCTATAGCATTTTAGGGGGT+CGG | - | chr5.4:19937010-19937029 | MS.gene051314:CDS | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | + | chr5.4:19939996-19940015 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | + | chr5.4:19939997-19940016 | None:intergenic | 45.0% |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | - | chr5.4:19939859-19939878 | MS.gene051314:intron | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | + | chr5.4:19939998-19940017 | None:intergenic | 45.0% |
| !! | TATATGTATATATATATATT+TGG | - | chr5.4:19938247-19938266 | MS.gene051314:intron | 5.0% |
| !! | TTATAAATTTATAAAATTAC+AGG | + | chr5.4:19937374-19937393 | None:intergenic | 5.0% |
| ACAACGTCGATCTGGCCATA+TGG | + | chr5.4:19938094-19938113 | None:intergenic | 50.0% | |
| ACAGGTGAAACCAGGACATC+AGG | + | chr5.4:19939387-19939406 | None:intergenic | 50.0% | |
| AGAACAGCAAGAGAAGCGAC+AGG | - | chr5.4:19939937-19939956 | MS.gene051314:intron | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | - | chr5.4:19939541-19939560 | MS.gene051314:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | - | chr5.4:19939326-19939345 | MS.gene051314:CDS | 50.0% | |
| AGCTCCCTGTGAATCCTTGA+AGG | + | chr5.4:19937807-19937826 | None:intergenic | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | - | chr5.4:19939837-19939856 | MS.gene051314:intron | 50.0% | |
| CAAAGGATCAAACCCTGAGC+AGG | + | chr5.4:19940049-19940068 | None:intergenic | 50.0% | |
| CATAGCCACGTGTCTGATTG+TGG | - | chr5.4:19937062-19937081 | MS.gene051314:CDS | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | - | chr5.4:19939157-19939176 | MS.gene051314:CDS | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | + | chr5.4:19939160-19939179 | None:intergenic | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | + | chr5.4:19939561-19939580 | None:intergenic | 50.0% | |
| GATCGCATTCCTAATCCGCT+AGG | + | chr5.4:19938137-19938156 | None:intergenic | 50.0% | |
| GGAGCAAGAAAAGAGGAAGG+AGG | + | chr5.4:19937228-19937247 | None:intergenic | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | + | chr5.4:19939369-19939388 | None:intergenic | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | - | chr5.4:19939838-19939857 | MS.gene051314:intron | 50.0% | |
| TTCCTTGGGAGCAACTGATC+GGG | - | chr5.4:19937586-19937605 | MS.gene051314:CDS | 50.0% | |
| ! | GGTGCTATGCGGCATTATCT+TGG | - | chr5.4:19937031-19937050 | MS.gene051314:CDS | 50.0% |
| !! | AAAAGCACCCGTTACCCAAG+AGG | + | chr5.4:19939855-19939874 | None:intergenic | 50.0% |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | + | chr5.4:19939995-19940014 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | - | chr5.4:19939858-19939877 | MS.gene051314:intron | 50.0% |
| AAAGCAGAGTCAGCACCACC+AGG | + | chr5.4:19939512-19939531 | None:intergenic | 55.0% | |
| AAAGCCTTTGGCTGCCATGG+TGG | + | chr5.4:19939558-19939577 | None:intergenic | 55.0% | |
| ACAGGCTCACAGGTGAAACC+AGG | + | chr5.4:19939395-19939414 | None:intergenic | 55.0% | |
| ATCAAACCCTGAGCAGGAGC+AGG | + | chr5.4:19940043-19940062 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | - | chr5.4:19939791-19939810 | MS.gene051314:intron | 55.0% | |
| GGTGAAACCAGGACATCAGG+TGG | + | chr5.4:19939384-19939403 | None:intergenic | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | - | chr5.4:19939844-19939863 | MS.gene051314:intron | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+AGG | + | chr5.4:19939405-19939424 | None:intergenic | 55.0% |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | + | chr5.4:19939985-19940004 | None:intergenic | 55.0% |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | - | chr5.4:19939513-19939532 | MS.gene051314:intron | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | - | chr5.4:19939517-19939536 | MS.gene051314:intron | 55.0% |
| !! | TGTTCAGGGCCTAGCGGATT+AGG | - | chr5.4:19938125-19938144 | MS.gene051314:intron | 55.0% |
| !! | TTTAGGGGGTCGGTGCTATG+CGG | - | chr5.4:19937020-19937039 | MS.gene051314:CDS | 55.0% |
| ACTGGGGCCTCTTGGGTAAC+GGG | - | chr5.4:19939845-19939864 | MS.gene051314:intron | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | - | chr5.4:19939374-19939393 | MS.gene051314:CDS | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | + | chr5.4:19939377-19939396 | None:intergenic | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | - | chr5.4:19939523-19939542 | MS.gene051314:intron | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | - | chr5.4:19940016-19940035 | MS.gene051314:intron | 60.0% | |
| GTCCCGATCAGTTGCTCCCA+AGG | + | chr5.4:19937591-19937610 | None:intergenic | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | - | chr5.4:19939551-19939570 | MS.gene051314:intron | 60.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | + | chr5.4:19940032-19940051 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | - | chr5.4:19940034-19940053 | MS.gene051314:intron | 65.0% | |
| CCCTGAGCAGGAGCAGGACC+AGG | + | chr5.4:19940037-19940056 | None:intergenic | 70.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | - | chr5.4:19940033-19940052 | MS.gene051314:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 19936915 | 19940069 | 19936915 | ID=MS.gene051314 |
| chr5.4 | mRNA | 19936915 | 19940069 | 19936915 | ID=MS.gene051314.t1;Parent=MS.gene051314 |
| chr5.4 | exon | 19940064 | 19940069 | 19940064 | ID=MS.gene051314.t1.exon1;Parent=MS.gene051314.t1 |
| chr5.4 | CDS | 19940064 | 19940069 | 19940064 | ID=cds.MS.gene051314.t1;Parent=MS.gene051314.t1 |
| chr5.4 | exon | 19939321 | 19939424 | 19939321 | ID=MS.gene051314.t1.exon2;Parent=MS.gene051314.t1 |
| chr5.4 | CDS | 19939321 | 19939424 | 19939321 | ID=cds.MS.gene051314.t1;Parent=MS.gene051314.t1 |
| chr5.4 | exon | 19939137 | 19939212 | 19939137 | ID=MS.gene051314.t1.exon3;Parent=MS.gene051314.t1 |
| chr5.4 | CDS | 19939137 | 19939212 | 19939137 | ID=cds.MS.gene051314.t1;Parent=MS.gene051314.t1 |
| chr5.4 | exon | 19937580 | 19937660 | 19937580 | ID=MS.gene051314.t1.exon4;Parent=MS.gene051314.t1 |
| chr5.4 | CDS | 19937580 | 19937660 | 19937580 | ID=cds.MS.gene051314.t1;Parent=MS.gene051314.t1 |
| chr5.4 | exon | 19936915 | 19937493 | 19936915 | ID=MS.gene051314.t1.exon5;Parent=MS.gene051314.t1 |
| chr5.4 | CDS | 19936915 | 19937493 | 19936915 | ID=cds.MS.gene051314.t1;Parent=MS.gene051314.t1 |
| Gene Sequence |
| Protein sequence |
