Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78939.t1 | XP_024640259.1 | 92.9 | 282 | 19 | 1 | 1 | 281 | 1 | 282 | 6.00E-116 | 427.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78939.t1 | Q9LFD5 | 60.9 | 258 | 87 | 5 | 3 | 255 | 5 | 253 | 2.4e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78939.t1 | A0A396HQQ7 | 92.9 | 282 | 19 | 1 | 1 | 281 | 1 | 282 | 4.3e-116 | 427.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058783 | MS.gene78939 | 0.800455 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78939 | MS.gene08184 | PPI |
| MS.gene042447 | MS.gene78939 | PPI |
| MS.gene41753 | MS.gene78939 | PPI |
| MS.gene78939 | MS.gene067833 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78939.t1 | MTR_5g029640 | 96.043 | 278 | 10 | 1 | 1 | 277 | 1 | 278 | 0.0 | 531 |
| MS.gene78939.t1 | MTR_5g029640 | 95.513 | 156 | 7 | 0 | 107 | 262 | 279 | 434 | 4.01e-96 | 290 |
| MS.gene78939.t1 | MTR_8g066460 | 79.715 | 281 | 55 | 1 | 1 | 281 | 1 | 279 | 1.09e-158 | 442 |
| MS.gene78939.t1 | MTR_8g066460 | 79.004 | 281 | 57 | 1 | 1 | 281 | 17 | 295 | 6.47e-157 | 439 |
| MS.gene78939.t1 | MTR_1g032860 | 56.977 | 258 | 99 | 3 | 3 | 253 | 31 | 283 | 1.79e-94 | 281 |
| MS.gene78939.t1 | MTR_8g105910 | 56.274 | 263 | 104 | 2 | 3 | 258 | 31 | 289 | 3.85e-94 | 280 |
| MS.gene78939.t1 | MTR_7g086080 | 45.276 | 254 | 121 | 3 | 1 | 238 | 1 | 252 | 7.68e-64 | 201 |
| MS.gene78939.t1 | MTR_5g039130 | 39.419 | 241 | 125 | 3 | 6 | 230 | 10 | 245 | 3.97e-47 | 158 |
| MS.gene78939.t1 | MTR_7g010100 | 33.077 | 260 | 126 | 8 | 5 | 230 | 7 | 252 | 4.29e-32 | 119 |
| MS.gene78939.t1 | MTR_5g038107 | 85.484 | 62 | 9 | 0 | 1 | 62 | 1 | 62 | 5.38e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78939.t1 | AT4G17720 | 68.773 | 269 | 81 | 2 | 1 | 266 | 1 | 269 | 1.11e-125 | 360 |
| MS.gene78939.t1 | AT5G46870 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.55e-114 | 330 |
| MS.gene78939.t1 | AT5G46870 | 65.000 | 280 | 89 | 3 | 1 | 271 | 1 | 280 | 4.55e-114 | 330 |
| MS.gene78939.t1 | AT5G16840 | 63.248 | 234 | 79 | 4 | 3 | 236 | 5 | 231 | 2.08e-98 | 289 |
| MS.gene78939.t1 | AT5G16840 | 62.288 | 236 | 81 | 4 | 1 | 236 | 1 | 228 | 2.88e-98 | 289 |
| MS.gene78939.t1 | AT5G16840 | 62.393 | 234 | 80 | 4 | 3 | 236 | 5 | 230 | 1.86e-97 | 287 |
| MS.gene78939.t1 | AT1G67950 | 53.942 | 241 | 101 | 2 | 3 | 243 | 28 | 258 | 3.09e-82 | 249 |
| MS.gene78939.t1 | AT1G67950 | 53.689 | 244 | 102 | 3 | 3 | 246 | 28 | 260 | 1.47e-81 | 247 |
| MS.gene78939.t1 | AT1G67950 | 53.689 | 244 | 102 | 3 | 3 | 246 | 29 | 261 | 1.65e-81 | 247 |
| MS.gene78939.t1 | AT5G32450 | 47.154 | 246 | 115 | 2 | 4 | 234 | 5 | 250 | 1.86e-65 | 206 |
| MS.gene78939.t1 | AT1G67950 | 52.153 | 209 | 89 | 3 | 35 | 243 | 1 | 198 | 8.78e-64 | 200 |
| MS.gene78939.t1 | AT1G14340 | 38.559 | 236 | 130 | 2 | 6 | 230 | 9 | 240 | 5.74e-41 | 142 |
| MS.gene78939.t1 | AT3G01210 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.21e-32 | 119 |
| MS.gene78939.t1 | AT3G01210 | 34.583 | 240 | 135 | 3 | 7 | 228 | 9 | 244 | 6.21e-32 | 119 |
Find 66 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5.3:+18587296 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5.3:-18587558 | MS.gene78939:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5.3:+18587472 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5.3:-18587258 | MS.gene78939:CDS |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5.3:+18587663 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5.3:-18587728 | MS.gene78939:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5.3:-18587464 | MS.gene78939:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5.3:-18587446 | MS.gene78939:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5.3:-18587614 | MS.gene78939:CDS |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5.3:+18587925 | None:intergenic |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5.3:+18589698 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5.3:-18587453 | MS.gene78939:CDS |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5.3:-18587917 | MS.gene78939:CDS |
| AACTGCTTATGTTACCTTCA+AGG | 0.409901 | 5.3:-18589475 | MS.gene78939:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5.3:-18587447 | MS.gene78939:CDS |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5.3:-18587454 | MS.gene78939:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5.3:+18587724 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5.3:-18589694 | MS.gene78939:CDS |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5.3:-18589693 | MS.gene78939:CDS |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5.3:-18587768 | MS.gene78939:CDS |
| AGCTCCCTGTGAGTCCTTGA+AGG | 0.464993 | 5.3:+18589461 | None:intergenic |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5.3:+18587262 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5.3:-18587384 | MS.gene78939:CDS |
| ACTGGTGAAACCAGGACATC+AGG | 0.472184 | 5.3:+18587907 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5.3:-18587257 | MS.gene78939:CDS |
| GTCCCGATCGGTTGCTCCCA+AGG | 0.478047 | 5.3:+18589677 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5.3:+18587733 | None:intergenic |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5.3:+18587245 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5.3:+18587257 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5.3:-18587275 | MS.gene78939:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5.3:+18587251 | None:intergenic |
| TTCCTTGGGAGCAACCGATC+GGG | 0.521537 | 5.3:-18589679 | MS.gene78939:CDS |
| TGTTACCTTCAAGGACTCAC+AGG | 0.527292 | 5.3:-18589466 | MS.gene78939:CDS |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5.3:+18587917 | None:intergenic |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5.3:-18587774 | MS.gene78939:CDS |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5.3:+18587782 | None:intergenic |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5.3:-18587463 | MS.gene78939:CDS |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5.3:-18587800 | MS.gene78939:CDS |
| TTTCCTTGGGAGCAACCGAT+CGG | 0.567350 | 5.3:-18589680 | MS.gene78939:CDS |
| TGAGACTGCAGTGTTGCTAT+CGG | 0.569142 | 5.3:-18589439 | MS.gene78939:intron |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5.3:-18587407 | MS.gene78939:CDS |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5.3:-18587573 | MS.gene78939:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5.3:+18587950 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5.3:-18587778 | MS.gene78939:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5.3:-18587950 | MS.gene78939:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5.3:-18587740 | MS.gene78939:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5.3:-18587500 | MS.gene78939:CDS |
| AAAATCAGCATTTGCAGCTG+CGG | 0.587626 | 5.3:-18587522 | MS.gene78939:CDS |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5.3:+18587646 | None:intergenic |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5.3:-18587333 | MS.gene78939:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5.3:-18587354 | MS.gene78939:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5.3:+18587736 | None:intergenic |
| ACAGGCTCACTGGTGAAACC+AGG | 0.608732 | 5.3:+18587899 | None:intergenic |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5.3:-18589626 | MS.gene78939:CDS |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5.3:+18587484 | None:intergenic |
| GAACTCTTGAATGTCCCGAT+CGG | 0.630975 | 5.3:+18589665 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5.3:-18587608 | MS.gene78939:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5.3:+18587439 | None:intergenic |
| GAGAGAGAACTGACCGACAT+CGG | 0.635770 | 5.3:+18591829 | None:intergenic |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5.3:-18587965 | MS.gene78939:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5.3:+18587910 | None:intergenic |
| GTTACCTTCAAGGACTCACA+GGG | 0.654621 | 5.3:-18589465 | MS.gene78939:CDS |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5.3:-18589623 | MS.gene78939:intron |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5.3:-18587797 | MS.gene78939:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5.3:-18587462 | MS.gene78939:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5.3:-18587750 | MS.gene78939:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTTTTTTTTTTT+TGG | - | chr5.3:18590026-18590045 | MS.gene78939:intron | 0.0% |
| !! | ATAAAATTGTGTATAATATA+AGG | - | chr5.3:18588937-18588956 | MS.gene78939:intron | 10.0% |
| !! | ATATATATATATAATCACTA+CGG | - | chr5.3:18589877-18589896 | MS.gene78939:intron | 10.0% |
| !!! | ATATTATACACAATTTTATT+TGG | + | chr5.3:18588936-18588955 | None:intergenic | 10.0% |
| !! | AACAATAATGACAAATTATA+TGG | + | chr5.3:18590444-18590463 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | + | chr5.3:18590316-18590335 | None:intergenic | 15.0% |
| !! | AGATTGAATATGAATATAAA+TGG | - | chr5.3:18590802-18590821 | MS.gene78939:intron | 15.0% |
| !! | ATTCATACTCTTAAAAAAAT+TGG | + | chr5.3:18588534-18588553 | None:intergenic | 15.0% |
| !! | CATTTATACTCTTAAAAAAA+GGG | + | chr5.3:18588511-18588530 | None:intergenic | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | + | chr5.3:18589555-18589574 | None:intergenic | 15.0% |
| !! | TATATATATATAATCACTAC+GGG | - | chr5.3:18589878-18589897 | MS.gene78939:intron | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | + | chr5.3:18589556-18589575 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | - | chr5.3:18589776-18589795 | MS.gene78939:intron | 15.0% |
| !!! | ATGTTATATTTGTTTTATTC+GGG | - | chr5.3:18590056-18590075 | MS.gene78939:intron | 15.0% |
| !!! | CATGTTATATTTGTTTTATT+CGG | - | chr5.3:18590055-18590074 | MS.gene78939:intron | 15.0% |
| !!! | GAATTCATTTTTTTTTTGTT+AGG | - | chr5.3:18587270-18587289 | MS.gene78939:CDS | 15.0% |
| !! | AAAAAAAAATGAATTCAGAG+AGG | + | chr5.3:18587266-18587285 | None:intergenic | 20.0% |
| !! | AATACAACATTATCCTTAAA+AGG | + | chr5.3:18588569-18588588 | None:intergenic | 20.0% |
| !! | AATATGATACTGAAATGAAA+TGG | - | chr5.3:18587584-18587603 | MS.gene78939:CDS | 20.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | - | chr5.3:18589294-18589313 | MS.gene78939:intron | 20.0% |
| !! | AATTGACGATAATACTAATA+TGG | + | chr5.3:18590368-18590387 | None:intergenic | 20.0% |
| !! | ATACAACATTATCCTTAAAA+GGG | + | chr5.3:18588568-18588587 | None:intergenic | 20.0% |
| !! | ATTGACGATAATACTAATAT+GGG | + | chr5.3:18590367-18590386 | None:intergenic | 20.0% |
| !! | CATAGGTTGTTTATAAAATT+AGG | - | chr5.3:18587561-18587580 | MS.gene78939:CDS | 20.0% |
| !! | CTTAAAAAAAGGGTTAAAAA+AGG | + | chr5.3:18588501-18588520 | None:intergenic | 20.0% |
| !! | CTTATTCATACTAAGAAATA+AGG | - | chr5.3:18588161-18588180 | MS.gene78939:intron | 20.0% |
| !! | GCATTTATACTCTTAAAAAA+AGG | + | chr5.3:18588512-18588531 | None:intergenic | 20.0% |
| !! | GGTTCTTTAATTATTAACTA+TGG | - | chr5.3:18588699-18588718 | MS.gene78939:intron | 20.0% |
| !! | TAACAAAGTTTATAAACGAA+AGG | + | chr5.3:18589523-18589542 | None:intergenic | 20.0% |
| !! | TATAAAATTACAGGTAAACA+AGG | + | chr5.3:18589170-18589189 | None:intergenic | 20.0% |
| !! | TATATATATATGAAACTACC+AGG | + | chr5.3:18589993-18590012 | None:intergenic | 20.0% |
| !! | TCTTTAATTATTAACTATGG+TGG | - | chr5.3:18588702-18588721 | MS.gene78939:intron | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | - | chr5.3:18590805-18590824 | MS.gene78939:intron | 20.0% |
| !!! | AAATGATATCAAGTATTGAA+TGG | - | chr5.3:18587984-18588003 | MS.gene78939:intron | 20.0% |
| !!! | ATGTTATGATTCTTTTAACT+TGG | - | chr5.3:18589128-18589147 | MS.gene78939:intron | 20.0% |
| !!! | ATTTATTGTTTGAGGATTTT+TGG | - | chr5.3:18587945-18587964 | MS.gene78939:CDS | 20.0% |
| !!! | CAAATATTTTCATGTTTGTA+AGG | + | chr5.3:18591247-18591266 | None:intergenic | 20.0% |
| !!! | CTTATTTCTTAGTATGAATA+AGG | + | chr5.3:18588163-18588182 | None:intergenic | 20.0% |
| !!! | GATCTTTTATTTATTGTTTG+AGG | - | chr5.3:18587937-18587956 | MS.gene78939:CDS | 20.0% |
| !!! | TGTTATATTTGTTTTATTCG+GGG | - | chr5.3:18590057-18590076 | MS.gene78939:intron | 20.0% |
| !!! | TTCTTTTTGATTATGTGAAT+GGG | - | chr5.3:18587524-18587543 | MS.gene78939:CDS | 20.0% |
| !!! | TTTCTTTTTGATTATGTGAA+TGG | - | chr5.3:18587523-18587542 | MS.gene78939:CDS | 20.0% |
| !!! | TTTTTGGTAATGGAATTAAT+TGG | - | chr5.3:18587961-18587980 | MS.gene78939:CDS | 20.0% |
| ! | AATAAGAGTTTCAGTAATGT+GGG | + | chr5.3:18590619-18590638 | None:intergenic | 25.0% |
| ! | ACAAACATGAAAATATTTGC+AGG | - | chr5.3:18591248-18591267 | MS.gene78939:intron | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | - | chr5.3:18589240-18589259 | MS.gene78939:intron | 25.0% |
| ! | ATAGAATCATCTTCTAACAA+TGG | - | chr5.3:18590746-18590765 | MS.gene78939:intron | 25.0% |
| ! | ATGAACGTATATTTAGTGTT+TGG | - | chr5.3:18587331-18587350 | MS.gene78939:CDS | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | - | chr5.3:18589819-18589838 | MS.gene78939:intron | 25.0% |
| ! | CAAAATGCTTGAATACTTAT+CGG | + | chr5.3:18587751-18587770 | None:intergenic | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | + | chr5.3:18591203-18591222 | None:intergenic | 25.0% |
| ! | CATTAGAATAATACAATCAG+AGG | + | chr5.3:18590967-18590986 | None:intergenic | 25.0% |
| ! | GCAATAAAACTTAAAAAGAG+AGG | + | chr5.3:18588668-18588687 | None:intergenic | 25.0% |
| ! | TAATAAGAGTTTCAGTAATG+TGG | + | chr5.3:18590620-18590639 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | - | chr5.3:18589239-18589258 | MS.gene78939:intron | 25.0% |
| ! | TATTTAGTGTTTGGTATCTT+AGG | - | chr5.3:18587340-18587359 | MS.gene78939:CDS | 25.0% |
| ! | TCTCATAAATCACTATATAG+AGG | - | chr5.3:18590463-18590482 | MS.gene78939:intron | 25.0% |
| ! | TGATATCATATCATCATCAT+AGG | + | chr5.3:18588903-18588922 | None:intergenic | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | - | chr5.3:18590979-18590998 | MS.gene78939:intron | 25.0% |
| ! | TTCTGACAATTAATTTCCTT+TGG | - | chr5.3:18587299-18587318 | MS.gene78939:CDS | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | - | chr5.3:18589420-18589439 | MS.gene78939:intron | 25.0% |
| !! | TTTAGGTAACCTCTTTTAAA+AGG | + | chr5.3:18588986-18589005 | None:intergenic | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | - | chr5.3:18590162-18590181 | MS.gene78939:intron | 25.0% |
| !!! | ATGACTTATCCTTTTAAAAG+AGG | - | chr5.3:18588974-18588993 | MS.gene78939:intron | 25.0% |
| !!! | ATTTTTAGACATTGCAATAG+CGG | - | chr5.3:18588783-18588802 | MS.gene78939:intron | 25.0% |
| !!! | TTACGATTCTTGTTTTCAAT+TGG | - | chr5.3:18587409-18587428 | MS.gene78939:CDS | 25.0% |
| AAACACAATGCAGTATTAAC+GGG | - | chr5.3:18590558-18590577 | MS.gene78939:intron | 30.0% | |
| AAATCACTATATAGAGGTCA+AGG | - | chr5.3:18590469-18590488 | MS.gene78939:intron | 30.0% | |
| AAGGATAGCGTATTAAGTAA+TGG | + | chr5.3:18589668-18589687 | None:intergenic | 30.0% | |
| AAGGGTTAAAAAAGGAATTG+AGG | + | chr5.3:18588493-18588512 | None:intergenic | 30.0% | |
| ACATTGCATATGTTGAACTA+CGG | - | chr5.3:18589444-18589463 | MS.gene78939:CDS | 30.0% | |
| ACCAGGAAAAAACTTCAAAT+TGG | + | chr5.3:18589976-18589995 | None:intergenic | 30.0% | |
| ACCTAAAGATGATAAACCTA+AGG | - | chr5.3:18588999-18589018 | MS.gene78939:intron | 30.0% | |
| ACCTTAGGTTTATCATCTTT+AGG | + | chr5.3:18589003-18589022 | None:intergenic | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | - | chr5.3:18590905-18590924 | MS.gene78939:intron | 30.0% | |
| ATCTCTTAATTACTACCAAC+AGG | + | chr5.3:18587872-18587891 | None:intergenic | 30.0% | |
| ATGTGAAACTGCGTTATATT+TGG | + | chr5.3:18591076-18591095 | None:intergenic | 30.0% | |
| ATTACTACCAACAGGTATTT+CGG | + | chr5.3:18587864-18587883 | None:intergenic | 30.0% | |
| ATTTCGGTATTATGGTAGTA+TGG | + | chr5.3:18587848-18587867 | None:intergenic | 30.0% | |
| CATATTCAATCTTGTACTGA+AGG | + | chr5.3:18590794-18590813 | None:intergenic | 30.0% | |
| CCAGGAAAAAACTTCAAATT+GGG | + | chr5.3:18589975-18589994 | None:intergenic | 30.0% | |
| CCTAAATTAAGTGACACTTA+AGG | - | chr5.3:18589688-18589707 | MS.gene78939:CDS | 30.0% | |
| CGTTCATAATCAAAATCCAA+AGG | + | chr5.3:18587318-18587337 | None:intergenic | 30.0% | |
| GAAAAAACTTCAAATTGGGA+GGG | + | chr5.3:18589971-18589990 | None:intergenic | 30.0% | |
| GAAACACAATGCAGTATTAA+CGG | - | chr5.3:18590557-18590576 | MS.gene78939:intron | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | - | chr5.3:18589818-18589837 | MS.gene78939:intron | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | + | chr5.3:18591204-18591223 | None:intergenic | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | + | chr5.3:18591601-18591620 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | - | chr5.3:18591686-18591705 | MS.gene78939:intron | 30.0% | |
| TCATCATCTGAAAACATTCA+AGG | - | chr5.3:18587608-18587627 | MS.gene78939:CDS | 30.0% | |
| TGCTCAGTGAAGTAATTAAA+TGG | + | chr5.3:18587823-18587842 | None:intergenic | 30.0% | |
| TGTCAGAATAATAGTGTTCA+GGG | - | chr5.3:18589921-18589940 | MS.gene78939:intron | 30.0% | |
| TTGTCAGAATAATAGTGTTC+AGG | - | chr5.3:18589920-18589939 | MS.gene78939:intron | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | - | chr5.3:18591212-18591231 | MS.gene78939:intron | 30.0% | |
| TTTCGGTATTATGGTAGTAT+GGG | + | chr5.3:18587847-18587866 | None:intergenic | 30.0% | |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | - | chr5.3:18589421-18589440 | MS.gene78939:intron | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | - | chr5.3:18589419-18589438 | MS.gene78939:intron | 30.0% |
| ! | TATTCCGCTATAGCATTTTA+GGG | - | chr5.3:18588807-18588826 | MS.gene78939:intron | 30.0% |
| ! | TGAAGGACTATCGAAATTTT+AGG | + | chr5.3:18590777-18590796 | None:intergenic | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | + | chr5.3:18589364-18589383 | None:intergenic | 30.0% |
| ! | TGGAGGAGTATATATTAGTA+GGG | - | chr5.3:18590182-18590201 | MS.gene78939:intron | 30.0% |
| !! | AAGTGTCACTTAATTTAGGA+AGG | + | chr5.3:18589687-18589706 | None:intergenic | 30.0% |
| !! | CCTTAAGTGTCACTTAATTT+AGG | + | chr5.3:18589691-18589710 | None:intergenic | 30.0% |
| !! | GTTTTATTGCTTTGTAGCTT+AGG | - | chr5.3:18588678-18588697 | MS.gene78939:intron | 30.0% |
| !! | TCTAGCAACTTTAAAATACC+TGG | - | chr5.3:18588292-18588311 | MS.gene78939:intron | 30.0% |
| !! | TTTTGATTATGTGAATGGGA+TGG | - | chr5.3:18587528-18587547 | MS.gene78939:CDS | 30.0% |
| !!! | AAAACTGCTACGTTTTTTCT+TGG | - | chr5.3:18587441-18587460 | MS.gene78939:CDS | 30.0% |
| !!! | TGTTTGAGGATTTTTGGTAA+TGG | - | chr5.3:18587951-18587970 | MS.gene78939:CDS | 30.0% |
| !!! | TTCTTGCTCCTGTTTTTAAA+AGG | - | chr5.3:18589041-18589060 | MS.gene78939:intron | 30.0% |
| AAAAACAGGAGCAAGAAAAG+AGG | + | chr5.3:18589038-18589057 | None:intergenic | 35.0% | |
| AACGCAGTTTCACATATTTC+AGG | - | chr5.3:18591081-18591100 | MS.gene78939:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | - | chr5.3:18589595-18589614 | MS.gene78939:intron | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | - | chr5.3:18591606-18591625 | MS.gene78939:intron | 35.0% | |
| AATGCTTGAATACTTATCGG+TGG | + | chr5.3:18587748-18587767 | None:intergenic | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | + | chr5.3:18590882-18590901 | None:intergenic | 35.0% | |
| ACGCAGTTTCACATATTTCA+GGG | - | chr5.3:18591082-18591101 | MS.gene78939:intron | 35.0% | |
| ACTCTCAATAGTGATATCTG+AGG | + | chr5.3:18590410-18590429 | None:intergenic | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | - | chr5.3:18591512-18591531 | MS.gene78939:intron | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | - | chr5.3:18591607-18591626 | MS.gene78939:intron | 35.0% | |
| ATGCTTGAATACTTATCGGT+GGG | + | chr5.3:18587747-18587766 | None:intergenic | 35.0% | |
| ATTCTATCCAGAGCAGTAAA+AGG | + | chr5.3:18590733-18590752 | None:intergenic | 35.0% | |
| CAACAGGTATTTCGGTATTA+TGG | + | chr5.3:18587856-18587875 | None:intergenic | 35.0% | |
| CAAGGTAAAACTACAGGATT+TGG | - | chr5.3:18590487-18590506 | MS.gene78939:intron | 35.0% | |
| CATAATACCGAAATACCTGT+TGG | - | chr5.3:18587854-18587873 | MS.gene78939:intron | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | - | chr5.3:18591439-18591458 | MS.gene78939:intron | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | + | chr5.3:18590881-18590900 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | - | chr5.3:18590904-18590923 | MS.gene78939:intron | 35.0% | |
| GGAAAAAACTTCAAATTGGG+AGG | + | chr5.3:18589972-18589991 | None:intergenic | 35.0% | |
| GTAAGTGAAAGTAAAACTCC+TGG | - | chr5.3:18591270-18591289 | MS.gene78939:intron | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | + | chr5.3:18590553-18590572 | None:intergenic | 35.0% | |
| TAGTGATATCTGAGGACAAT+TGG | + | chr5.3:18590402-18590421 | None:intergenic | 35.0% | |
| TCCAAAAGGCTGAATATTTC+AGG | + | chr5.3:18590539-18590558 | None:intergenic | 35.0% | |
| TGAATGTAGATAGGTACTCA+TGG | - | chr5.3:18589303-18589322 | MS.gene78939:intron | 35.0% | |
| TGTTCACTATTAGGGTTTCA+GGG | - | chr5.3:18588460-18588479 | MS.gene78939:intron | 35.0% | |
| TTCTTGTCAGTACGCTATAA+TGG | + | chr5.3:18589231-18589250 | None:intergenic | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | + | chr5.3:18591349-18591368 | None:intergenic | 35.0% | |
| ! | AACTTTTCCTTTTACTGCTC+TGG | - | chr5.3:18590723-18590742 | MS.gene78939:intron | 35.0% |
| ! | ACTATAGTGGAATTGCATAG+CGG | - | chr5.3:18588335-18588354 | MS.gene78939:intron | 35.0% |
| ! | AGGACTATCGAAATTTTAGG+CGG | + | chr5.3:18590774-18590793 | None:intergenic | 35.0% |
| ! | AGTATTGAATGGTGATAAGC+TGG | - | chr5.3:18587995-18588014 | MS.gene78939:intron | 35.0% |
| ! | ATTCCGCTATAGCATTTTAG+GGG | - | chr5.3:18588808-18588827 | MS.gene78939:intron | 35.0% |
| ! | CTATTCCGCTATAGCATTTT+AGG | - | chr5.3:18588806-18588825 | MS.gene78939:intron | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | - | chr5.3:18590181-18590200 | MS.gene78939:intron | 35.0% |
| ! | GGGCATTTTGCTTTAATAGT+CGG | - | chr5.3:18589260-18589279 | MS.gene78939:intron | 35.0% |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | - | chr5.3:18591647-18591666 | MS.gene78939:intron | 35.0% |
| ! | TTCACTAGTCTCTCTATTTG+TGG | - | chr5.3:18590648-18590667 | MS.gene78939:intron | 35.0% |
| !! | CAAGGTTGTGTTGTTTAGTT+CGG | - | chr5.3:18587626-18587645 | MS.gene78939:CDS | 35.0% |
| !! | CGTGTGTTCCTTTTAAAAAC+AGG | + | chr5.3:18589052-18589071 | None:intergenic | 35.0% |
| !! | GTCATTTAATTTGTGACTGG+AGG | - | chr5.3:18590165-18590184 | MS.gene78939:intron | 35.0% |
| !! | TGTTCCATAACGGATTACAT+TGG | - | chr5.3:18590513-18590532 | MS.gene78939:intron | 35.0% |
| !!! | CCCAATTTGAAGTTTTTTCC+TGG | - | chr5.3:18589972-18589991 | MS.gene78939:intron | 35.0% |
| !!! | TCGTGATAGCTAGCTTTTAA+GGG | + | chr5.3:18587782-18587801 | None:intergenic | 35.0% |
| !!! | TGTCGATTCAAACCCTTTTA+AGG | - | chr5.3:18588553-18588572 | MS.gene78939:intron | 35.0% |
| AAAATCAGCATTTGCAGCTG+CGG | - | chr5.3:18591548-18591567 | MS.gene78939:intron | 40.0% | |
| AAAGTCAGCAACGTTTCCTT+GGG | - | chr5.3:18589377-18589396 | MS.gene78939:intron | 40.0% | |
| AACCTTCTCTGGACAGTTAA+AGG | - | chr5.3:18587689-18587708 | MS.gene78939:CDS | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | - | chr5.3:18590928-18590947 | MS.gene78939:intron | 40.0% | |
| ACCCTAATAGTGAACACAGT+AGG | + | chr5.3:18588456-18588475 | None:intergenic | 40.0% | |
| ACCTTCTCTGGACAGTTAAA+GGG | - | chr5.3:18587690-18587709 | MS.gene78939:CDS | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | - | chr5.3:18590929-18590948 | MS.gene78939:intron | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | - | chr5.3:18590481-18590500 | MS.gene78939:intron | 40.0% | |
| AGGAAGGAGGTAAAAACCTT+AGG | + | chr5.3:18589018-18589037 | None:intergenic | 40.0% | |
| AGTGAAAGTAAAACTCCTGG+TGG | - | chr5.3:18591273-18591292 | MS.gene78939:intron | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | - | chr5.3:18589471-18589490 | MS.gene78939:CDS | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | - | chr5.3:18590878-18590897 | MS.gene78939:intron | 40.0% | |
| CCCTAATAGTGAACACAGTA+GGG | + | chr5.3:18588455-18588474 | None:intergenic | 40.0% | |
| CCCTACTGTGTTCACTATTA+GGG | - | chr5.3:18588452-18588471 | MS.gene78939:intron | 40.0% | |
| CCTAATAGTGAACACAGTAG+GGG | + | chr5.3:18588454-18588473 | None:intergenic | 40.0% | |
| CGAAAGGAATCTAAGAGAAG+TGG | + | chr5.3:18589507-18589526 | None:intergenic | 40.0% | |
| CTCTATTTGTGGAGACACAT+TGG | - | chr5.3:18590659-18590678 | MS.gene78939:intron | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | - | chr5.3:18591462-18591481 | MS.gene78939:intron | 40.0% | |
| CTTGGGCTTAGTGAGAAAAT+AGG | - | chr5.3:18591456-18591475 | MS.gene78939:intron | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | - | chr5.3:18591608-18591627 | MS.gene78939:intron | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | - | chr5.3:18591497-18591516 | MS.gene78939:intron | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | - | chr5.3:18591438-18591457 | MS.gene78939:intron | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | - | chr5.3:18591737-18591756 | MS.gene78939:intron | 40.0% | |
| GTGTTCACTATTAGGGTTTC+AGG | - | chr5.3:18588459-18588478 | MS.gene78939:intron | 40.0% | |
| TAAAGTCAGCAACGTTTCCT+TGG | - | chr5.3:18589376-18589395 | MS.gene78939:intron | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | - | chr5.3:18590897-18590916 | MS.gene78939:intron | 40.0% | |
| TATAATCACTACGGGCCATA+TGG | - | chr5.3:18589886-18589905 | MS.gene78939:intron | 40.0% | |
| TCTATGACAACATAGACACC+AGG | + | chr5.3:18588313-18588332 | None:intergenic | 40.0% | |
| TGCTTGAATACTTATCGGTG+GGG | + | chr5.3:18587746-18587765 | None:intergenic | 40.0% | |
| TTATTCTGACAACGTCGATC+TGG | + | chr5.3:18589912-18589931 | None:intergenic | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | - | chr5.3:18589447-18589466 | MS.gene78939:CDS | 40.0% | |
| ! | AATTACAGAGGGTCTAAGAC+AGG | + | chr5.3:18591192-18591211 | None:intergenic | 40.0% |
| ! | GATTTGGTCGTGTTCCATAA+CGG | - | chr5.3:18590503-18590522 | MS.gene78939:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | - | chr5.3:18590535-18590554 | MS.gene78939:intron | 40.0% |
| ! | GTTGTCATAGAGCACTATAG+TGG | - | chr5.3:18588322-18588341 | MS.gene78939:intron | 40.0% |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | + | chr5.3:18591452-18591471 | None:intergenic | 40.0% |
| ! | TTCCGCTATAGCATTTTAGG+GGG | - | chr5.3:18588809-18588828 | MS.gene78939:intron | 40.0% |
| !! | ATTTTAGCAGCCGGTAATTG+CGG | - | chr5.3:18588409-18588428 | MS.gene78939:intron | 40.0% |
| !! | GGAAACGTTGCTGACTTTAA+CGG | + | chr5.3:18589375-18589394 | None:intergenic | 40.0% |
| !!! | GTCGTGATAGCTAGCTTTTA+AGG | + | chr5.3:18587783-18587802 | None:intergenic | 40.0% |
| AAAATCACAATCGCCGAAGG+TGG | + | chr5.3:18588394-18588413 | None:intergenic | 45.0% | |
| AACAGATGCAACTGTTGCTG+AGG | + | chr5.3:18591427-18591446 | None:intergenic | 45.0% | |
| ACAGGAGCAAGAAAAGAGGA+AGG | + | chr5.3:18589034-18589053 | None:intergenic | 45.0% | |
| ATATGGGACACGCTAACTAG+TGG | + | chr5.3:18590351-18590370 | None:intergenic | 45.0% | |
| CAAGGTTACACAACCTTCTC+TGG | - | chr5.3:18587678-18587697 | MS.gene78939:CDS | 45.0% | |
| CAGGCCAATGTAATCCGTTA+TGG | + | chr5.3:18590520-18590539 | None:intergenic | 45.0% | |
| CCAACATGCAAACCTAGCTA+GGG | + | chr5.3:18587653-18587672 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | + | chr5.3:18591123-18591142 | None:intergenic | 45.0% | |
| CCCCTACTGTGTTCACTATT+AGG | - | chr5.3:18588451-18588470 | MS.gene78939:intron | 45.0% | |
| CCTAGCTAGGTTTGCATGTT+GGG | - | chr5.3:18587651-18587670 | MS.gene78939:CDS | 45.0% | |
| CTAGCTAGGTTTGCATGTTG+GGG | - | chr5.3:18587652-18587671 | MS.gene78939:CDS | 45.0% | |
| CTATTCCACAATCAGACACG+TGG | + | chr5.3:18588873-18588892 | None:intergenic | 45.0% | |
| CTGAGGCTTTCGATGATAAC+TGG | + | chr5.3:18591410-18591429 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | + | chr5.3:18591589-18591608 | None:intergenic | 45.0% | |
| GAACTCTTGAATGTCCCGAT+CGG | + | chr5.3:18589408-18589427 | None:intergenic | 45.0% | |
| GACCCCCTAAAATGCTATAG+CGG | + | chr5.3:18588814-18588833 | None:intergenic | 45.0% | |
| GCTAAAATCACAATCGCCGA+AGG | + | chr5.3:18588397-18588416 | None:intergenic | 45.0% | |
| GTTACCTTCAAGGACTCACA+GGG | - | chr5.3:18589605-18589624 | MS.gene78939:intron | 45.0% | |
| GTTTGCATGTTGGGGATACA+AGG | - | chr5.3:18587660-18587679 | MS.gene78939:CDS | 45.0% | |
| TAATAGTGTTCAGGGCCTAG+CGG | - | chr5.3:18589929-18589948 | MS.gene78939:intron | 45.0% | |
| TATGGGACACGCTAACTAGT+GGG | + | chr5.3:18590350-18590369 | None:intergenic | 45.0% | |
| TCCCTTTAACTGTCCAGAGA+AGG | + | chr5.3:18587694-18587713 | None:intergenic | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | + | chr5.3:18590942-18590961 | None:intergenic | 45.0% | |
| TGTTACCTTCAAGGACTCAC+AGG | - | chr5.3:18589604-18589623 | MS.gene78939:intron | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | - | chr5.3:18590923-18590942 | MS.gene78939:intron | 45.0% | |
| ! | ATAGTGGAATTGCATAGCGG+TGG | - | chr5.3:18588338-18588357 | MS.gene78939:intron | 45.0% |
| ! | CCTGTCGGTTACAATAACTC+TGG | - | chr5.3:18591120-18591139 | MS.gene78939:intron | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | - | chr5.3:18591342-18591361 | MS.gene78939:intron | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | - | chr5.3:18591663-18591682 | MS.gene78939:intron | 45.0% |
| ! | TGAGACTGCAGTGTTGCTAT+CGG | - | chr5.3:18589631-18589650 | MS.gene78939:CDS | 45.0% |
| !! | GCGATTGTGATTTTAGCAGC+CGG | - | chr5.3:18588400-18588419 | MS.gene78939:intron | 45.0% |
| !! | GCTATAGCATTTTAGGGGGT+CGG | - | chr5.3:18588813-18588832 | MS.gene78939:intron | 45.0% |
| !! | GGGATGGTAGAAGTGTTCAT+AGG | - | chr5.3:18587544-18587563 | MS.gene78939:CDS | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | + | chr5.3:18591775-18591794 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | + | chr5.3:18591776-18591795 | None:intergenic | 45.0% |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | - | chr5.3:18591638-18591657 | MS.gene78939:intron | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | + | chr5.3:18591777-18591796 | None:intergenic | 45.0% |
| !! | TTATAAATTTATAAAATTAC+AGG | + | chr5.3:18589179-18589198 | None:intergenic | 5.0% |
| AAGCTAGCTATCACGACACG+AGG | - | chr5.3:18587786-18587805 | MS.gene78939:CDS | 50.0% | |
| ACAACGTCGATCTGGCCATA+TGG | + | chr5.3:18589904-18589923 | None:intergenic | 50.0% | |
| ACTGGTGAAACCAGGACATC+AGG | + | chr5.3:18591166-18591185 | None:intergenic | 50.0% | |
| AGAACAGCAAGAGAAGCGAC+AGG | - | chr5.3:18591716-18591735 | MS.gene78939:intron | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | - | chr5.3:18591320-18591339 | MS.gene78939:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | - | chr5.3:18591105-18591124 | MS.gene78939:intron | 50.0% | |
| AGCTAGCTATCACGACACGA+GGG | - | chr5.3:18587787-18587806 | MS.gene78939:CDS | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | - | chr5.3:18591616-18591635 | MS.gene78939:intron | 50.0% | |
| CAAAGGATCAAACCCTGAGC+AGG | + | chr5.3:18591828-18591847 | None:intergenic | 50.0% | |
| CATAGCCACGTGTCTGATTG+TGG | - | chr5.3:18588865-18588884 | MS.gene78939:intron | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | - | chr5.3:18590936-18590955 | MS.gene78939:intron | 50.0% | |
| CCCAACATGCAAACCTAGCT+AGG | + | chr5.3:18587654-18587673 | None:intergenic | 50.0% | |
| CCCTAGCTAGGTTTGCATGT+TGG | - | chr5.3:18587650-18587669 | MS.gene78939:CDS | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | + | chr5.3:18590939-18590958 | None:intergenic | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | + | chr5.3:18591340-18591359 | None:intergenic | 50.0% | |
| GATCGCATTCCTAATCCGCT+AGG | + | chr5.3:18589947-18589966 | None:intergenic | 50.0% | |
| GGAATTGCATAGCGGTGGTA+GGG | - | chr5.3:18588343-18588362 | MS.gene78939:intron | 50.0% | |
| GGAGCAAGAAAAGAGGAAGG+AGG | + | chr5.3:18589031-18589050 | None:intergenic | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | + | chr5.3:18591148-18591167 | None:intergenic | 50.0% | |
| TGGAATTGCATAGCGGTGGT+AGG | - | chr5.3:18588342-18588361 | MS.gene78939:intron | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | - | chr5.3:18591617-18591636 | MS.gene78939:intron | 50.0% | |
| TTTCCTTGGGAGCAACCGAT+CGG | - | chr5.3:18589390-18589409 | MS.gene78939:intron | 50.0% | |
| ! | GGTGCTATGCGGCATTATCT+TGG | - | chr5.3:18588834-18588853 | MS.gene78939:intron | 50.0% |
| ! | GTTTAGTTCGGTCCCTAGCT+AGG | - | chr5.3:18587638-18587657 | MS.gene78939:CDS | 50.0% |
| !! | AAAAGCACCCGTTACCCAAG+AGG | + | chr5.3:18591634-18591653 | None:intergenic | 50.0% |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | + | chr5.3:18591774-18591793 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | - | chr5.3:18591637-18591656 | MS.gene78939:intron | 50.0% |
| AAAGCAGAGTCAGCACCACC+AGG | + | chr5.3:18591291-18591310 | None:intergenic | 55.0% | |
| AAAGCCTTTGGCTGCCATGG+TGG | + | chr5.3:18591337-18591356 | None:intergenic | 55.0% | |
| ACAATCGCCGAAGGTGGCTT+GGG | + | chr5.3:18588388-18588407 | None:intergenic | 55.0% | |
| ACAGGCTCACTGGTGAAACC+AGG | + | chr5.3:18591174-18591193 | None:intergenic | 55.0% | |
| AGCTCCCTGTGAGTCCTTGA+AGG | + | chr5.3:18589612-18589631 | None:intergenic | 55.0% | |
| ATCAAACCCTGAGCAGGAGC+AGG | + | chr5.3:18591822-18591841 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | - | chr5.3:18591570-18591589 | MS.gene78939:intron | 55.0% | |
| GGTGAAACCAGGACATCAGG+TGG | + | chr5.3:18591163-18591182 | None:intergenic | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | - | chr5.3:18591623-18591642 | MS.gene78939:intron | 55.0% | |
| TGCATAGCGGTGGTAGGGTT+TGG | - | chr5.3:18588348-18588367 | MS.gene78939:intron | 55.0% | |
| TTCCTTGGGAGCAACCGATC+GGG | - | chr5.3:18589391-18589410 | MS.gene78939:intron | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+TGG | + | chr5.3:18591184-18591203 | None:intergenic | 55.0% |
| ! | AGGGTTTGGCACGACGCTTT+TGG | - | chr5.3:18588362-18588381 | MS.gene78939:intron | 55.0% |
| ! | CTTTTGGCCCAAGCCACCTT+CGG | - | chr5.3:18588378-18588397 | MS.gene78939:intron | 55.0% |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | + | chr5.3:18591764-18591783 | None:intergenic | 55.0% |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | - | chr5.3:18591292-18591311 | MS.gene78939:intron | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | - | chr5.3:18591296-18591315 | MS.gene78939:intron | 55.0% |
| !! | TGTTCAGGGCCTAGCGGATT+AGG | - | chr5.3:18589935-18589954 | MS.gene78939:intron | 55.0% |
| !! | TTTAGGGGGTCGGTGCTATG+CGG | - | chr5.3:18588823-18588842 | MS.gene78939:intron | 55.0% |
| ACTGGGGCCTCTTGGGTAAC+GGG | - | chr5.3:18591624-18591643 | MS.gene78939:intron | 60.0% | |
| CACAATCGCCGAAGGTGGCT+TGG | + | chr5.3:18588389-18588408 | None:intergenic | 60.0% | |
| CACAGTAGGGGACGCGATAG+CGG | + | chr5.3:18588442-18588461 | None:intergenic | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | - | chr5.3:18591153-18591172 | MS.gene78939:intron | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | + | chr5.3:18591156-18591175 | None:intergenic | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | - | chr5.3:18591302-18591321 | MS.gene78939:intron | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | - | chr5.3:18591795-18591814 | MS.gene78939:intron | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | - | chr5.3:18591330-18591349 | MS.gene78939:intron | 60.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | + | chr5.3:18591811-18591830 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | - | chr5.3:18591813-18591832 | MS.gene78939:intron | 65.0% | |
| CGGCATGGGGCCGCAATTAC+CGG | + | chr5.3:18588422-18588441 | None:intergenic | 65.0% | |
| GTCCCGATCGGTTGCTCCCA+AGG | + | chr5.3:18589396-18589415 | None:intergenic | 65.0% | |
| ! | AGGGGACGCGATAGCGGCAT+GGG | + | chr5.3:18588436-18588455 | None:intergenic | 65.0% |
| ! | TAGGGGACGCGATAGCGGCA+TGG | + | chr5.3:18588437-18588456 | None:intergenic | 65.0% |
| CCCTGAGCAGGAGCAGGACC+AGG | + | chr5.3:18591816-18591835 | None:intergenic | 70.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | - | chr5.3:18591812-18591831 | MS.gene78939:intron | 70.0% | |
| ! | GGGGACGCGATAGCGGCATG+GGG | + | chr5.3:18588435-18588454 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 18587244 | 18591848 | 18587244 | ID=MS.gene78939 |
| chr5.3 | mRNA | 18587244 | 18591848 | 18587244 | ID=MS.gene78939.t1;Parent=MS.gene78939 |
| chr5.3 | exon | 18591843 | 18591848 | 18591843 | ID=MS.gene78939.t1.exon1;Parent=MS.gene78939.t1 |
| chr5.3 | CDS | 18591843 | 18591848 | 18591843 | ID=cds.MS.gene78939.t1;Parent=MS.gene78939.t1 |
| chr5.3 | exon | 18589624 | 18589727 | 18589624 | ID=MS.gene78939.t1.exon2;Parent=MS.gene78939.t1 |
| chr5.3 | CDS | 18589624 | 18589727 | 18589624 | ID=cds.MS.gene78939.t1;Parent=MS.gene78939.t1 |
| chr5.3 | exon | 18589440 | 18589515 | 18589440 | ID=MS.gene78939.t1.exon3;Parent=MS.gene78939.t1 |
| chr5.3 | CDS | 18589440 | 18589515 | 18589440 | ID=cds.MS.gene78939.t1;Parent=MS.gene78939.t1 |
| chr5.3 | exon | 18587909 | 18587989 | 18587909 | ID=MS.gene78939.t1.exon4;Parent=MS.gene78939.t1 |
| chr5.3 | CDS | 18587909 | 18587989 | 18587909 | ID=cds.MS.gene78939.t1;Parent=MS.gene78939.t1 |
| chr5.3 | exon | 18587244 | 18587822 | 18587244 | ID=MS.gene78939.t1.exon5;Parent=MS.gene78939.t1 |
| chr5.3 | CDS | 18587244 | 18587822 | 18587244 | ID=cds.MS.gene78939.t1;Parent=MS.gene78939.t1 |
| Gene Sequence |
| Protein sequence |
