Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97723.t1 | XP_024640259.1 | 92.9 | 281 | 19 | 1 | 10 | 289 | 2 | 282 | 1.80E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97723.t1 | Q9LFD5 | 60.9 | 258 | 87 | 5 | 11 | 263 | 5 | 253 | 1.5e-57 | 224.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97723.t1 | A0A396HQQ7 | 92.9 | 281 | 19 | 1 | 10 | 289 | 2 | 282 | 1.3e-115 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene41753 | MS.gene97723 | PPI |
| MS.gene97723 | MS.gene08184 | PPI |
| MS.gene067833 | MS.gene97723 | PPI |
| MS.gene042447 | MS.gene97723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97723.t1 | MTR_5g029640 | 96.029 | 277 | 10 | 1 | 10 | 285 | 2 | 278 | 0.0 | 528 |
| MS.gene97723.t1 | MTR_5g029640 | 95.513 | 156 | 7 | 0 | 115 | 270 | 279 | 434 | 3.49e-96 | 291 |
| MS.gene97723.t1 | MTR_8g066460 | 79.643 | 280 | 55 | 1 | 10 | 289 | 2 | 279 | 9.25e-158 | 441 |
| MS.gene97723.t1 | MTR_8g066460 | 78.723 | 282 | 58 | 1 | 8 | 289 | 16 | 295 | 6.67e-157 | 439 |
| MS.gene97723.t1 | MTR_1g032860 | 53.793 | 290 | 116 | 5 | 2 | 278 | 21 | 305 | 9.15e-96 | 285 |
| MS.gene97723.t1 | MTR_8g105910 | 55.678 | 273 | 109 | 3 | 2 | 266 | 21 | 289 | 1.35e-95 | 284 |
| MS.gene97723.t1 | MTR_7g086080 | 45.418 | 251 | 119 | 3 | 12 | 246 | 4 | 252 | 4.50e-63 | 200 |
| MS.gene97723.t1 | MTR_5g039130 | 39.419 | 241 | 125 | 3 | 14 | 238 | 10 | 245 | 8.80e-47 | 157 |
| MS.gene97723.t1 | MTR_7g010100 | 33.077 | 260 | 126 | 8 | 13 | 238 | 7 | 252 | 8.33e-32 | 119 |
| MS.gene97723.t1 | MTR_5g038107 | 85.246 | 61 | 9 | 0 | 10 | 70 | 2 | 62 | 9.63e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene97723.t1 | AT4G17720 | 68.657 | 268 | 81 | 2 | 10 | 274 | 2 | 269 | 1.41e-124 | 358 |
| MS.gene97723.t1 | AT5G46870 | 64.875 | 279 | 89 | 3 | 10 | 279 | 2 | 280 | 6.72e-113 | 328 |
| MS.gene97723.t1 | AT5G46870 | 64.875 | 279 | 89 | 3 | 10 | 279 | 2 | 280 | 6.72e-113 | 328 |
| MS.gene97723.t1 | AT5G16840 | 63.248 | 234 | 79 | 4 | 11 | 244 | 5 | 231 | 4.46e-98 | 289 |
| MS.gene97723.t1 | AT5G16840 | 62.128 | 235 | 81 | 4 | 10 | 244 | 2 | 228 | 2.66e-97 | 286 |
| MS.gene97723.t1 | AT5G16840 | 62.393 | 234 | 80 | 4 | 11 | 244 | 5 | 230 | 3.99e-97 | 286 |
| MS.gene97723.t1 | AT1G67950 | 53.279 | 244 | 104 | 2 | 11 | 254 | 28 | 261 | 4.10e-82 | 249 |
| MS.gene97723.t1 | AT1G67950 | 53.689 | 244 | 102 | 3 | 11 | 254 | 29 | 261 | 1.88e-81 | 247 |
| MS.gene97723.t1 | AT1G67950 | 53.689 | 244 | 102 | 3 | 11 | 254 | 28 | 260 | 1.97e-81 | 247 |
| MS.gene97723.t1 | AT5G32450 | 47.154 | 246 | 115 | 2 | 12 | 242 | 5 | 250 | 1.61e-65 | 206 |
| MS.gene97723.t1 | AT1G67950 | 51.415 | 212 | 92 | 3 | 43 | 254 | 1 | 201 | 1.26e-63 | 199 |
| MS.gene97723.t1 | AT1G14340 | 38.559 | 236 | 130 | 2 | 14 | 238 | 9 | 240 | 9.39e-41 | 142 |
| MS.gene97723.t1 | AT3G01210 | 34.274 | 248 | 138 | 4 | 7 | 236 | 4 | 244 | 8.25e-32 | 119 |
| MS.gene97723.t1 | AT3G01210 | 34.274 | 248 | 138 | 4 | 7 | 236 | 4 | 244 | 8.25e-32 | 119 |
Find 66 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTTACTGCTGCTGCTTT+TGG | 0.172080 | 5.1:+20215960 | None:intergenic |
| AGAAGTGGATCAAAAGTTTC+TGG | 0.237272 | 5.1:-20216222 | MS.gene97723:CDS |
| TACATAGCGATTCTTCATTA+TGG | 0.279605 | 5.1:+20216136 | None:intergenic |
| GCCTGGTCCTGCTCCTGCTC+AGG | 0.286119 | 5.1:-20215922 | MS.gene97723:CDS |
| CTGAGGCTTTCGATGATAAC+TGG | 0.317547 | 5.1:+20216327 | None:intergenic |
| GCAGCCAAAGGCTTTATCTT+AGG | 0.324517 | 5.1:-20216392 | MS.gene97723:CDS |
| AAGAATCGCTATGTACTTAC+TGG | 0.334978 | 5.1:-20216128 | MS.gene97723:CDS |
| ACTGGGGCCTCTTGGGTAAC+GGG | 0.340405 | 5.1:-20216110 | MS.gene97723:CDS |
| CTTGGGCTTAGTGAGAAAAT+AGG | 0.358546 | 5.1:-20216278 | MS.gene97723:CDS |
| TCAGGTGGAAGCTGGTAATC+TGG | 0.379435 | 5.1:+20216589 | None:intergenic |
| TTCTTGTCAGTACGCTATAA+TGG | 0.380865 | 5.1:+20218542 | None:intergenic |
| GGAAACGTTGCTGACTTTAA+CGG | 0.389154 | 5.1:+20218398 | None:intergenic |
| TGTACTTACTGGGGCCTCTT+GGG | 0.389213 | 5.1:-20216117 | MS.gene97723:CDS |
| CCAGCTTCCACCTGATGTCC+TGG | 0.402216 | 5.1:-20216581 | MS.gene97723:CDS |
| AACTGCTTATGTTACCTTCA+AGG | 0.409901 | 5.1:-20218175 | MS.gene97723:CDS |
| TACTGGGGCCTCTTGGGTAA+CGG | 0.411141 | 5.1:-20216111 | MS.gene97723:CDS |
| ATGTACTTACTGGGGCCTCT+TGG | 0.411693 | 5.1:-20216118 | MS.gene97723:CDS |
| TTTGCCTAAGATAAAGCCTT+TGG | 0.412306 | 5.1:+20216388 | None:intergenic |
| TAAAGTCAGCAACGTTTCCT+TGG | 0.428384 | 5.1:-20218394 | MS.gene97723:CDS |
| AAAGTCAGCAACGTTTCCTT+GGG | 0.448315 | 5.1:-20218393 | MS.gene97723:CDS |
| CTCTGCTTTGCGGAAGGCAG+AGG | 0.460878 | 5.1:-20216432 | MS.gene97723:CDS |
| AGCTCCCTGTGAGTCCTTGA+AGG | 0.464993 | 5.1:+20218161 | None:intergenic |
| AGCAGGAGCAGGACCAGGCT+TGG | 0.466748 | 5.1:+20215926 | None:intergenic |
| TCAGAAAACAAAAGAGAAAG+TGG | 0.468617 | 5.1:-20216048 | MS.gene97723:CDS |
| ACTGGTGAAACCAGGACATC+AGG | 0.472184 | 5.1:+20216571 | None:intergenic |
| CCTGGTCCTGCTCCTGCTCA+GGG | 0.474520 | 5.1:-20215921 | MS.gene97723:CDS |
| GTCCCGATCGGTTGCTCCCA+AGG | 0.478047 | 5.1:+20218377 | None:intergenic |
| GATAAAGCCTTTGGCTGCCA+TGG | 0.490356 | 5.1:+20216397 | None:intergenic |
| CAAAGGATCAAACCCTGAGC+AGG | 0.508481 | 5.1:+20215909 | None:intergenic |
| CCCTGAGCAGGAGCAGGACC+AGG | 0.511908 | 5.1:+20215921 | None:intergenic |
| GAGCAGCAGTCTTCCAAGCC+TGG | 0.512092 | 5.1:-20215939 | MS.gene97723:CDS |
| ATCAAACCCTGAGCAGGAGC+AGG | 0.514850 | 5.1:+20215915 | None:intergenic |
| TTCCTTGGGAGCAACCGATC+GGG | 0.521537 | 5.1:-20218379 | MS.gene97723:CDS |
| TGTTACCTTCAAGGACTCAC+AGG | 0.527292 | 5.1:-20218166 | MS.gene97723:CDS |
| CCAGGACATCAGGTGGAAGC+TGG | 0.539426 | 5.1:+20216581 | None:intergenic |
| TGCTGACTCTGCTTTGCGGA+AGG | 0.545827 | 5.1:-20216438 | MS.gene97723:CDS |
| AAAGCAGAGTCAGCACCACC+AGG | 0.550514 | 5.1:+20216446 | None:intergenic |
| AGAATCGCTATGTACTTACT+GGG | 0.560460 | 5.1:-20216127 | MS.gene97723:CDS |
| GTAAGTGAAAGTAAAACTCC+TGG | 0.566343 | 5.1:-20216464 | MS.gene97723:CDS |
| TTTCCTTGGGAGCAACCGAT+CGG | 0.567350 | 5.1:-20218380 | MS.gene97723:CDS |
| TGAGACTGCAGTGTTGCTAT+CGG | 0.569142 | 5.1:-20218139 | MS.gene97723:intron |
| TCTAAGGCAGCTGTAGAAGT+AGG | 0.569408 | 5.1:-20216071 | MS.gene97723:CDS |
| GAGTGATAAAGTTCGAGAAG+TGG | 0.574003 | 5.1:-20216237 | MS.gene97723:CDS |
| CCAGAGTTATTGTAACCGAC+AGG | 0.574661 | 5.1:+20216614 | None:intergenic |
| GTGGTGCTGACTCTGCTTTG+CGG | 0.575762 | 5.1:-20216442 | MS.gene97723:CDS |
| CCTGTCGGTTACAATAACTC+TGG | 0.579610 | 5.1:-20216614 | MS.gene97723:CDS |
| GTCTCCACCATGGCAGCCAA+AGG | 0.583043 | 5.1:-20216404 | MS.gene97723:CDS |
| GAACAGACAGTCAGTACCGC+TGG | 0.585550 | 5.1:-20216164 | MS.gene97723:CDS |
| AAAATCAGCATTTGCAGCTG+CGG | 0.587626 | 5.1:-20216186 | MS.gene97723:CDS |
| AACAGATGCAACTGTTGCTG+AGG | 0.591922 | 5.1:+20216310 | None:intergenic |
| GGTTGAAGATCAATATGCAC+AGG | 0.603498 | 5.1:-20215997 | MS.gene97723:CDS |
| AGAACAGCAAGAGAAGCGAC+AGG | 0.607277 | 5.1:-20216018 | MS.gene97723:CDS |
| AAAGCCTTTGGCTGCCATGG+TGG | 0.608702 | 5.1:+20216400 | None:intergenic |
| ACAGGCTCACTGGTGAAACC+AGG | 0.608732 | 5.1:+20216563 | None:intergenic |
| ACATTGCATATGTTGAACTA+CGG | 0.613252 | 5.1:-20218326 | MS.gene97723:CDS |
| CTTCATTATGGCAGAACCAG+CGG | 0.621990 | 5.1:+20216148 | None:intergenic |
| GAACTCTTGAATGTCCCGAT+CGG | 0.630975 | 5.1:+20218365 | None:intergenic |
| CTTAGTGAGAAAATAGGTGC+TGG | 0.632545 | 5.1:-20216272 | MS.gene97723:CDS |
| AAAAGCACCCGTTACCCAAG+AGG | 0.634112 | 5.1:+20216103 | None:intergenic |
| AGCAACAATCGTCGACCTGT+CGG | 0.648969 | 5.1:-20216629 | MS.gene97723:CDS |
| GGTGAAACCAGGACATCAGG+TGG | 0.653918 | 5.1:+20216574 | None:intergenic |
| GTTACCTTCAAGGACTCACA+GGG | 0.654621 | 5.1:-20218165 | MS.gene97723:CDS |
| TTGCATATGTTGAACTACGG+AGG | 0.697074 | 5.1:-20218323 | MS.gene97723:intron |
| AGTGAAAGTAAAACTCCTGG+TGG | 0.700864 | 5.1:-20216461 | MS.gene97723:CDS |
| GAATCGCTATGTACTTACTG+GGG | 0.704674 | 5.1:-20216126 | MS.gene97723:CDS |
| AGAGGATGTAGTCTCCACCA+TGG | 0.712456 | 5.1:-20216414 | MS.gene97723:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTTTTTT+TGG | - | chr5.1:20216762-20216781 | MS.gene97723:intron | 0.0% |
| !! | ATATATATATAAAATCACTA+CGG | - | chr5.1:20216617-20216636 | MS.gene97723:CDS | 10.0% |
| !! | AACAATAATGACAAATTATA+TGG | + | chr5.1:20217180-20217199 | None:intergenic | 15.0% |
| !! | AAGATAAAAAAGCAAATTAA+AGG | + | chr5.1:20217052-20217071 | None:intergenic | 15.0% |
| !! | AGATTGAATATGAATATAAA+TGG | - | chr5.1:20217538-20217557 | MS.gene97723:intron | 15.0% |
| !! | GTATCAATATATAGAAATTA+GGG | + | chr5.1:20216255-20216274 | None:intergenic | 15.0% |
| !! | TATATATATAAAATCACTAC+GGG | - | chr5.1:20216618-20216637 | MS.gene97723:CDS | 15.0% |
| !! | TGTATCAATATATAGAAATT+AGG | + | chr5.1:20216256-20216275 | None:intergenic | 15.0% |
| !!! | AAATTATATTTGTTAACTAC+TGG | - | chr5.1:20216476-20216495 | MS.gene97723:intron | 15.0% |
| !!! | ATGTTATATTTGTTTTATTC+GGG | - | chr5.1:20216792-20216811 | MS.gene97723:intron | 15.0% |
| !!! | CATGTTATATTTGTTTTATT+CGG | - | chr5.1:20216791-20216810 | MS.gene97723:intron | 15.0% |
| !! | AATATGATTTGAATGTAGAT+AGG | - | chr5.1:20215994-20216013 | MS.gene97723:CDS | 20.0% |
| !! | AATTGACGATAATACTAATA+TGG | + | chr5.1:20217104-20217123 | None:intergenic | 20.0% |
| !! | ATTGACGATAATACTAATAT+GGG | + | chr5.1:20217103-20217122 | None:intergenic | 20.0% |
| !! | TAACAAAGTTTATAAACGAA+AGG | + | chr5.1:20216223-20216242 | None:intergenic | 20.0% |
| !! | TATATATATATGAAACTACC+AGG | + | chr5.1:20216733-20216752 | None:intergenic | 20.0% |
| !! | TTGAATATGAATATAAATGG+AGG | - | chr5.1:20217541-20217560 | MS.gene97723:intron | 20.0% |
| !!! | CAAATATTTTCATGTTTGTA+AGG | + | chr5.1:20217983-20218002 | None:intergenic | 20.0% |
| !!! | TGTTATATTTGTTTTATTCG+GGG | - | chr5.1:20216793-20216812 | MS.gene97723:intron | 20.0% |
| ! | AATAAGAGTTTCAGTAATGT+GGG | + | chr5.1:20217355-20217374 | None:intergenic | 25.0% |
| ! | ACAAACATGAAAATATTTGC+AGG | - | chr5.1:20217984-20218003 | MS.gene97723:intron | 25.0% |
| ! | ACTGACAAGAAATACTATAT+GGG | - | chr5.1:20215940-20215959 | MS.gene97723:CDS | 25.0% |
| ! | ATAGAATCATCTTCTAACAA+TGG | - | chr5.1:20217482-20217501 | MS.gene97723:intron | 25.0% |
| ! | ATGCATAGTAGAGTATAATA+GGG | - | chr5.1:20216519-20216538 | MS.gene97723:intron | 25.0% |
| ! | CATGCAATAAAAATTACAGA+GGG | + | chr5.1:20217939-20217958 | None:intergenic | 25.0% |
| ! | CATTAGAATAATACAATCAG+AGG | + | chr5.1:20217703-20217722 | None:intergenic | 25.0% |
| ! | TAATAAGAGTTTCAGTAATG+TGG | + | chr5.1:20217356-20217375 | None:intergenic | 25.0% |
| ! | TACTGACAAGAAATACTATA+TGG | - | chr5.1:20215939-20215958 | MS.gene97723:CDS | 25.0% |
| ! | TCTCATAAATCACTATATAG+AGG | - | chr5.1:20217199-20217218 | MS.gene97723:intron | 25.0% |
| ! | TTCTAATGTAACAGTATGTT+TGG | - | chr5.1:20217715-20217734 | MS.gene97723:intron | 25.0% |
| !! | AAGAGTTCTTTTCTTTTTCT+GGG | - | chr5.1:20216120-20216139 | MS.gene97723:CDS | 25.0% |
| !!! | AATGTCATTTAATTTGTGAC+TGG | - | chr5.1:20216898-20216917 | MS.gene97723:intron | 25.0% |
| AAACACAATGCAGTATTAAC+GGG | - | chr5.1:20217294-20217313 | MS.gene97723:intron | 30.0% | |
| AAATCACTATATAGAGGTCA+AGG | - | chr5.1:20217205-20217224 | MS.gene97723:intron | 30.0% | |
| AAGGATAGCGTATTAAGTAA+TGG | + | chr5.1:20216368-20216387 | None:intergenic | 30.0% | |
| ACATTGCATATGTTGAACTA+CGG | - | chr5.1:20216144-20216163 | MS.gene97723:CDS | 30.0% | |
| ACCAGGAAAAAACTTCAAAT+TGG | + | chr5.1:20216716-20216735 | None:intergenic | 30.0% | |
| ACTATTTGTCTGTGGTAATT+GGG | - | chr5.1:20217641-20217660 | MS.gene97723:intron | 30.0% | |
| ATGTGAAACTGCGTTATATT+TGG | + | chr5.1:20217812-20217831 | None:intergenic | 30.0% | |
| CATATTCAATCTTGTACTGA+AGG | + | chr5.1:20217530-20217549 | None:intergenic | 30.0% | |
| CCAGGAAAAAACTTCAAATT+GGG | + | chr5.1:20216715-20216734 | None:intergenic | 30.0% | |
| CCTAAATTAAGTGACACTTA+AGG | - | chr5.1:20216388-20216407 | MS.gene97723:CDS | 30.0% | |
| GAAAAAACTTCAAATTGGGA+GGG | + | chr5.1:20216711-20216730 | None:intergenic | 30.0% | |
| GAAACACAATGCAGTATTAA+CGG | - | chr5.1:20217293-20217312 | MS.gene97723:intron | 30.0% | |
| GATGCATAGTAGAGTATAAT+AGG | - | chr5.1:20216518-20216537 | MS.gene97723:intron | 30.0% | |
| GCATGCAATAAAAATTACAG+AGG | + | chr5.1:20217940-20217959 | None:intergenic | 30.0% | |
| TACATAGCGATTCTTCATTA+TGG | + | chr5.1:20218337-20218356 | None:intergenic | 30.0% | |
| TCAGAAAACAAAAGAGAAAG+TGG | - | chr5.1:20218422-20218441 | MS.gene97723:intron | 30.0% | |
| TGTCAGAATAATAGTGTTCA+GGG | - | chr5.1:20216661-20216680 | MS.gene97723:intron | 30.0% | |
| TTGTCAGAATAATAGTGTTC+AGG | - | chr5.1:20216660-20216679 | MS.gene97723:intron | 30.0% | |
| TTTATTGCATGCAAGTAAGT+AGG | - | chr5.1:20217948-20217967 | MS.gene97723:intron | 30.0% | |
| ! | AGAGTTCTTTTCTTTTTCTG+GGG | - | chr5.1:20216121-20216140 | MS.gene97723:CDS | 30.0% |
| ! | CAAGAGTTCTTTTCTTTTTC+TGG | - | chr5.1:20216119-20216138 | MS.gene97723:CDS | 30.0% |
| ! | TGAAGGACTATCGAAATTTT+AGG | + | chr5.1:20217513-20217532 | None:intergenic | 30.0% |
| ! | TGACTTTAACGGTTTTTATC+TGG | + | chr5.1:20216064-20216083 | None:intergenic | 30.0% |
| ! | TGGAGGAGTATATATTAGTA+GGG | - | chr5.1:20216918-20216937 | MS.gene97723:intron | 30.0% |
| !! | AAGTGTCACTTAATTTAGGA+AGG | + | chr5.1:20216387-20216406 | None:intergenic | 30.0% |
| !! | CCTTAAGTGTCACTTAATTT+AGG | + | chr5.1:20216391-20216410 | None:intergenic | 30.0% |
| AACGCAGTTTCACATATTTC+AGG | - | chr5.1:20217817-20217836 | MS.gene97723:intron | 35.0% | |
| AACTGCTTATGTTACCTTCA+AGG | - | chr5.1:20216295-20216314 | MS.gene97723:CDS | 35.0% | |
| AAGAATCGCTATGTACTTAC+TGG | - | chr5.1:20218342-20218361 | MS.gene97723:CDS | 35.0% | |
| ACCTAGAAAGAAACATCTAG+TGG | + | chr5.1:20217618-20217637 | None:intergenic | 35.0% | |
| ACGCAGTTTCACATATTTCA+GGG | - | chr5.1:20217818-20217837 | MS.gene97723:intron | 35.0% | |
| ACTCTCAATAGTGATATCTG+AGG | + | chr5.1:20217146-20217165 | None:intergenic | 35.0% | |
| AGAAGTGGATCAAAAGTTTC+TGG | - | chr5.1:20218248-20218267 | MS.gene97723:intron | 35.0% | |
| AGAATCGCTATGTACTTACT+GGG | - | chr5.1:20218343-20218362 | MS.gene97723:CDS | 35.0% | |
| ATTCTATCCAGAGCAGTAAA+AGG | + | chr5.1:20217469-20217488 | None:intergenic | 35.0% | |
| CAAGGTAAAACTACAGGATT+TGG | - | chr5.1:20217223-20217242 | MS.gene97723:intron | 35.0% | |
| CATCTGTTGACCAAAAACTT+GGG | - | chr5.1:20218175-20218194 | MS.gene97723:CDS | 35.0% | |
| CCTAGAAAGAAACATCTAGT+GGG | + | chr5.1:20217617-20217636 | None:intergenic | 35.0% | |
| GACTATTTGTCTGTGGTAAT+TGG | - | chr5.1:20217640-20217659 | MS.gene97723:intron | 35.0% | |
| GGAAAAAACTTCAAATTGGG+AGG | + | chr5.1:20216712-20216731 | None:intergenic | 35.0% | |
| GTAAGTGAAAGTAAAACTCC+TGG | - | chr5.1:20218006-20218025 | MS.gene97723:intron | 35.0% | |
| TACTGCATTGTGTTTCCAAA+AGG | + | chr5.1:20217289-20217308 | None:intergenic | 35.0% | |
| TAGTGATATCTGAGGACAAT+TGG | + | chr5.1:20217138-20217157 | None:intergenic | 35.0% | |
| TCCAAAAGGCTGAATATTTC+AGG | + | chr5.1:20217275-20217294 | None:intergenic | 35.0% | |
| TGAATGTAGATAGGTACTCA+TGG | - | chr5.1:20216003-20216022 | MS.gene97723:CDS | 35.0% | |
| TTCTTGTCAGTACGCTATAA+TGG | + | chr5.1:20215931-20215950 | None:intergenic | 35.0% | |
| TTTGCCTAAGATAAAGCCTT+TGG | + | chr5.1:20218085-20218104 | None:intergenic | 35.0% | |
| ! | AACTTTTCCTTTTACTGCTC+TGG | - | chr5.1:20217459-20217478 | MS.gene97723:intron | 35.0% |
| ! | AGGACTATCGAAATTTTAGG+CGG | + | chr5.1:20217510-20217529 | None:intergenic | 35.0% |
| ! | CTGGAGGAGTATATATTAGT+AGG | - | chr5.1:20216917-20216936 | MS.gene97723:intron | 35.0% |
| ! | GGGCATTTTGCTTTAATAGT+CGG | - | chr5.1:20215960-20215979 | MS.gene97723:CDS | 35.0% |
| ! | TGCAAGTAAGTAGGCTATTT+TGG | - | chr5.1:20217957-20217976 | MS.gene97723:intron | 35.0% |
| ! | TGCTTTTAACAGGGTTTCTA+AGG | - | chr5.1:20218383-20218402 | MS.gene97723:CDS | 35.0% |
| ! | TTCACTAGTCTCTCTATTTG+TGG | - | chr5.1:20217384-20217403 | MS.gene97723:intron | 35.0% |
| !! | GTCATTTAATTTGTGACTGG+AGG | - | chr5.1:20216901-20216920 | MS.gene97723:intron | 35.0% |
| !! | TGTTCCATAACGGATTACAT+TGG | - | chr5.1:20217249-20217268 | MS.gene97723:intron | 35.0% |
| !!! | CCCAATTTGAAGTTTTTTCC+TGG | - | chr5.1:20216712-20216731 | MS.gene97723:intron | 35.0% |
| AAAATCAGCATTTGCAGCTG+CGG | - | chr5.1:20218284-20218303 | MS.gene97723:intron | 40.0% | |
| AAAGTCAGCAACGTTTCCTT+GGG | - | chr5.1:20216077-20216096 | MS.gene97723:CDS | 40.0% | |
| AAGAATAGCCACCTATGGTA+TGG | - | chr5.1:20217664-20217683 | MS.gene97723:intron | 40.0% | |
| AGAATAGCCACCTATGGTAT+GGG | - | chr5.1:20217665-20217684 | MS.gene97723:intron | 40.0% | |
| AGAGGTCAAGGTAAAACTAC+AGG | - | chr5.1:20217217-20217236 | MS.gene97723:intron | 40.0% | |
| AGTGAAAGTAAAACTCCTGG+TGG | - | chr5.1:20218009-20218028 | MS.gene97723:intron | 40.0% | |
| CAGTTACTACTTACTGCACT+TGG | - | chr5.1:20216171-20216190 | MS.gene97723:CDS | 40.0% | |
| CCCACTAGATGTTTCTTTCT+AGG | - | chr5.1:20217614-20217633 | MS.gene97723:intron | 40.0% | |
| CGAAAGGAATCTAAGAGAAG+TGG | + | chr5.1:20216207-20216226 | None:intergenic | 40.0% | |
| CTCTATTTGTGGAGACACAT+TGG | - | chr5.1:20217395-20217414 | MS.gene97723:intron | 40.0% | |
| CTTAGTGAGAAAATAGGTGC+TGG | - | chr5.1:20218198-20218217 | MS.gene97723:intron | 40.0% | |
| CTTGGGCTTAGTGAGAAAAT+AGG | - | chr5.1:20218192-20218211 | MS.gene97723:CDS | 40.0% | |
| GAATCGCTATGTACTTACTG+GGG | - | chr5.1:20218344-20218363 | MS.gene97723:CDS | 40.0% | |
| GAGTGATAAAGTTCGAGAAG+TGG | - | chr5.1:20218233-20218252 | MS.gene97723:intron | 40.0% | |
| GCATCTGTTGACCAAAAACT+TGG | - | chr5.1:20218174-20218193 | MS.gene97723:CDS | 40.0% | |
| GGTTGAAGATCAATATGCAC+AGG | - | chr5.1:20218473-20218492 | MS.gene97723:intron | 40.0% | |
| TAAAATCACTACGGGCCATA+TGG | - | chr5.1:20216626-20216645 | MS.gene97723:CDS | 40.0% | |
| TAAAGTCAGCAACGTTTCCT+TGG | - | chr5.1:20216076-20216095 | MS.gene97723:CDS | 40.0% | |
| TAGGTGAGACTATTTGTCTG+TGG | - | chr5.1:20217633-20217652 | MS.gene97723:intron | 40.0% | |
| TTATTCTGACAACGTCGATC+TGG | + | chr5.1:20216652-20216671 | None:intergenic | 40.0% | |
| TTGCATATGTTGAACTACGG+AGG | - | chr5.1:20216147-20216166 | MS.gene97723:CDS | 40.0% | |
| ! | AATTACAGAGGGTCTAAGAC+AGG | + | chr5.1:20217928-20217947 | None:intergenic | 40.0% |
| ! | GATTTGGTCGTGTTCCATAA+CGG | - | chr5.1:20217239-20217258 | MS.gene97723:intron | 40.0% |
| ! | GCCTGAAATATTCAGCCTTT+TGG | - | chr5.1:20217271-20217290 | MS.gene97723:intron | 40.0% |
| ! | TCTCACTAAGCCCAAGTTTT+TGG | + | chr5.1:20218188-20218207 | None:intergenic | 40.0% |
| !! | GGAAACGTTGCTGACTTTAA+CGG | + | chr5.1:20216075-20216094 | None:intergenic | 40.0% |
| AACAGATGCAACTGTTGCTG+AGG | + | chr5.1:20218163-20218182 | None:intergenic | 45.0% | |
| ATATGGGACACGCTAACTAG+TGG | + | chr5.1:20217087-20217106 | None:intergenic | 45.0% | |
| CAGGCCAATGTAATCCGTTA+TGG | + | chr5.1:20217256-20217275 | None:intergenic | 45.0% | |
| CCAGAGTTATTGTAACCGAC+AGG | + | chr5.1:20217859-20217878 | None:intergenic | 45.0% | |
| CTGAGGCTTTCGATGATAAC+TGG | + | chr5.1:20218146-20218165 | None:intergenic | 45.0% | |
| CTTCATTATGGCAGAACCAG+CGG | + | chr5.1:20218325-20218344 | None:intergenic | 45.0% | |
| GAACTCTTGAATGTCCCGAT+CGG | + | chr5.1:20216108-20216127 | None:intergenic | 45.0% | |
| GTTACCTTCAAGGACTCACA+GGG | - | chr5.1:20216305-20216324 | MS.gene97723:CDS | 45.0% | |
| TAATAGTGTTCAGGGCCTAG+CGG | - | chr5.1:20216669-20216688 | MS.gene97723:intron | 45.0% | |
| TATGGGACACGCTAACTAGT+GGG | + | chr5.1:20217086-20217105 | None:intergenic | 45.0% | |
| TGTCCTACATCCCATACCAT+AGG | + | chr5.1:20217678-20217697 | None:intergenic | 45.0% | |
| TGTTACCTTCAAGGACTCAC+AGG | - | chr5.1:20216304-20216323 | MS.gene97723:CDS | 45.0% | |
| TTGGGAAGAATAGCCACCTA+TGG | - | chr5.1:20217659-20217678 | MS.gene97723:intron | 45.0% | |
| ! | CCTGTCGGTTACAATAACTC+TGG | - | chr5.1:20217856-20217875 | MS.gene97723:intron | 45.0% |
| ! | GCAGCCAAAGGCTTTATCTT+AGG | - | chr5.1:20218078-20218097 | MS.gene97723:intron | 45.0% |
| ! | TCTAAGGCAGCTGTAGAAGT+AGG | - | chr5.1:20218399-20218418 | MS.gene97723:CDS | 45.0% |
| ! | TGAGACTGCAGTGTTGCTAT+CGG | - | chr5.1:20216331-20216350 | MS.gene97723:CDS | 45.0% |
| !!! | ACTTACTGCTGCTGCTTTTG+GGG | + | chr5.1:20218511-20218530 | None:intergenic | 45.0% |
| !!! | CACTTACTGCTGCTGCTTTT+GGG | + | chr5.1:20218512-20218531 | None:intergenic | 45.0% |
| !!! | GGTAACGGGTGCTTTTAACA+GGG | - | chr5.1:20218374-20218393 | MS.gene97723:CDS | 45.0% |
| !!! | TCACTTACTGCTGCTGCTTT+TGG | + | chr5.1:20218513-20218532 | None:intergenic | 45.0% |
| ACAACGTCGATCTGGCCATA+TGG | + | chr5.1:20216644-20216663 | None:intergenic | 50.0% | |
| ACTGGTGAAACCAGGACATC+AGG | + | chr5.1:20217902-20217921 | None:intergenic | 50.0% | |
| AGAACAGCAAGAGAAGCGAC+AGG | - | chr5.1:20218452-20218471 | MS.gene97723:intron | 50.0% | |
| AGAGGATGTAGTCTCCACCA+TGG | - | chr5.1:20218056-20218075 | MS.gene97723:intron | 50.0% | |
| AGCAACAATCGTCGACCTGT+CGG | - | chr5.1:20217841-20217860 | MS.gene97723:intron | 50.0% | |
| ATGTACTTACTGGGGCCTCT+TGG | - | chr5.1:20218352-20218371 | MS.gene97723:CDS | 50.0% | |
| CAAAGGATCAAACCCTGAGC+AGG | + | chr5.1:20218564-20218583 | None:intergenic | 50.0% | |
| CCACCTATGGTATGGGATGT+AGG | - | chr5.1:20217672-20217691 | MS.gene97723:intron | 50.0% | |
| CCTACATCCCATACCATAGG+TGG | + | chr5.1:20217675-20217694 | None:intergenic | 50.0% | |
| GATAAAGCCTTTGGCTGCCA+TGG | + | chr5.1:20218076-20218095 | None:intergenic | 50.0% | |
| GATCGCATTCCTAATCCGCT+AGG | + | chr5.1:20216687-20216706 | None:intergenic | 50.0% | |
| TCAGGTGGAAGCTGGTAATC+TGG | + | chr5.1:20217884-20217903 | None:intergenic | 50.0% | |
| TGTACTTACTGGGGCCTCTT+GGG | - | chr5.1:20218353-20218372 | MS.gene97723:CDS | 50.0% | |
| TTTCCTTGGGAGCAACCGAT+CGG | - | chr5.1:20216090-20216109 | MS.gene97723:CDS | 50.0% | |
| !! | AAAAGCACCCGTTACCCAAG+AGG | + | chr5.1:20218370-20218389 | None:intergenic | 50.0% |
| !!! | CTTACTGCTGCTGCTTTTGG+GGG | + | chr5.1:20218510-20218529 | None:intergenic | 50.0% |
| !!! | GGGTAACGGGTGCTTTTAAC+AGG | - | chr5.1:20218373-20218392 | MS.gene97723:CDS | 50.0% |
| AAAGCAGAGTCAGCACCACC+AGG | + | chr5.1:20218027-20218046 | None:intergenic | 55.0% | |
| AAAGCCTTTGGCTGCCATGG+TGG | + | chr5.1:20218073-20218092 | None:intergenic | 55.0% | |
| ACAGGCTCACTGGTGAAACC+AGG | + | chr5.1:20217910-20217929 | None:intergenic | 55.0% | |
| AGCTCCCTGTGAGTCCTTGA+AGG | + | chr5.1:20216312-20216331 | None:intergenic | 55.0% | |
| ATCAAACCCTGAGCAGGAGC+AGG | + | chr5.1:20218558-20218577 | None:intergenic | 55.0% | |
| GAACAGACAGTCAGTACCGC+TGG | - | chr5.1:20218306-20218325 | MS.gene97723:intron | 55.0% | |
| GGTGAAACCAGGACATCAGG+TGG | + | chr5.1:20217899-20217918 | None:intergenic | 55.0% | |
| TACTGGGGCCTCTTGGGTAA+CGG | - | chr5.1:20218359-20218378 | MS.gene97723:CDS | 55.0% | |
| TTCCTTGGGAGCAACCGATC+GGG | - | chr5.1:20216091-20216110 | MS.gene97723:CDS | 55.0% | |
| ! | AGGGTCTAAGACAGGCTCAC+TGG | + | chr5.1:20217920-20217939 | None:intergenic | 55.0% |
| !! | CTGCTTTTGGGGGCTCAGAA+AGG | + | chr5.1:20218500-20218519 | None:intergenic | 55.0% |
| !! | GTGGTGCTGACTCTGCTTTG+CGG | - | chr5.1:20218028-20218047 | MS.gene97723:intron | 55.0% |
| !! | TGCTGACTCTGCTTTGCGGA+AGG | - | chr5.1:20218032-20218051 | MS.gene97723:intron | 55.0% |
| !! | TGTTCAGGGCCTAGCGGATT+AGG | - | chr5.1:20216675-20216694 | MS.gene97723:intron | 55.0% |
| ACTGGGGCCTCTTGGGTAAC+GGG | - | chr5.1:20218360-20218379 | MS.gene97723:CDS | 60.0% | |
| CCAGCTTCCACCTGATGTCC+TGG | - | chr5.1:20217889-20217908 | MS.gene97723:intron | 60.0% | |
| CCAGGACATCAGGTGGAAGC+TGG | + | chr5.1:20217892-20217911 | None:intergenic | 60.0% | |
| CTCTGCTTTGCGGAAGGCAG+AGG | - | chr5.1:20218038-20218057 | MS.gene97723:intron | 60.0% | |
| GAGCAGCAGTCTTCCAAGCC+TGG | - | chr5.1:20218531-20218550 | MS.gene97723:intron | 60.0% | |
| GTCTCCACCATGGCAGCCAA+AGG | - | chr5.1:20218066-20218085 | MS.gene97723:intron | 60.0% | |
| AGCAGGAGCAGGACCAGGCT+TGG | + | chr5.1:20218547-20218566 | None:intergenic | 65.0% | |
| CCTGGTCCTGCTCCTGCTCA+GGG | - | chr5.1:20218549-20218568 | MS.gene97723:intron | 65.0% | |
| GTCCCGATCGGTTGCTCCCA+AGG | + | chr5.1:20216096-20216115 | None:intergenic | 65.0% | |
| CCCTGAGCAGGAGCAGGACC+AGG | + | chr5.1:20218552-20218571 | None:intergenic | 70.0% | |
| GCCTGGTCCTGCTCCTGCTC+AGG | - | chr5.1:20218548-20218567 | MS.gene97723:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 20215908 | 20218584 | 20215908 | ID=MS.gene97723 |
| chr5.1 | mRNA | 20215908 | 20218584 | 20215908 | ID=MS.gene97723.t1;Parent=MS.gene97723 |
| chr5.1 | exon | 20218555 | 20218584 | 20218555 | ID=MS.gene97723.t1.exon1;Parent=MS.gene97723.t1 |
| chr5.1 | CDS | 20218555 | 20218584 | 20218555 | ID=cds.MS.gene97723.t1;Parent=MS.gene97723.t1 |
| chr5.1 | exon | 20218324 | 20218427 | 20218324 | ID=MS.gene97723.t1.exon2;Parent=MS.gene97723.t1 |
| chr5.1 | CDS | 20218324 | 20218427 | 20218324 | ID=cds.MS.gene97723.t1;Parent=MS.gene97723.t1 |
| chr5.1 | exon | 20218140 | 20218215 | 20218140 | ID=MS.gene97723.t1.exon3;Parent=MS.gene97723.t1 |
| chr5.1 | CDS | 20218140 | 20218215 | 20218140 | ID=cds.MS.gene97723.t1;Parent=MS.gene97723.t1 |
| chr5.1 | exon | 20216573 | 20216653 | 20216573 | ID=MS.gene97723.t1.exon4;Parent=MS.gene97723.t1 |
| chr5.1 | CDS | 20216573 | 20216653 | 20216573 | ID=cds.MS.gene97723.t1;Parent=MS.gene97723.t1 |
| chr5.1 | exon | 20215908 | 20216486 | 20215908 | ID=MS.gene97723.t1.exon5;Parent=MS.gene97723.t1 |
| chr5.1 | CDS | 20215908 | 20216486 | 20215908 | ID=cds.MS.gene97723.t1;Parent=MS.gene97723.t1 |
| Gene Sequence |
| Protein sequence |
