Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042800.t1 | XP_003619759.1 | 99.6 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 4.70E-133 | 483.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042800.t1 | Q9M060 | 87.8 | 245 | 30 | 0 | 1 | 245 | 1 | 245 | 5.9e-124 | 444.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042800.t1 | G7KPA2 | 99.6 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 3.4e-133 | 483.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene46845 | MS.gene042800 | PPI |
| MS.gene042800 | MS.gene64202 | PPI |
| MS.gene019784 | MS.gene042800 | PPI |
| MS.gene64000 | MS.gene042800 | PPI |
| MS.gene042800 | MS.gene03315 | PPI |
| MS.gene85722 | MS.gene042800 | PPI |
| MS.gene39725 | MS.gene042800 | PPI |
| MS.gene24174 | MS.gene042800 | PPI |
| MS.gene80364 | MS.gene042800 | PPI |
| MS.gene042800 | MS.gene48145 | PPI |
| MS.gene27050 | MS.gene042800 | PPI |
| MS.gene03346 | MS.gene042800 | PPI |
| MS.gene57277 | MS.gene042800 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042800.t1 | MTR_6g065670 | 99.592 | 245 | 1 | 0 | 1 | 245 | 1 | 245 | 0.0 | 497 |
| MS.gene042800.t1 | MTR_1g077160 | 86.066 | 244 | 34 | 0 | 1 | 244 | 245 | 488 | 4.62e-158 | 447 |
| MS.gene042800.t1 | MTR_1g077160 | 83.556 | 225 | 37 | 0 | 1 | 225 | 1 | 225 | 6.17e-140 | 402 |
| MS.gene042800.t1 | MTR_6g065670 | 97.115 | 208 | 6 | 0 | 38 | 245 | 11 | 218 | 1.27e-147 | 410 |
| MS.gene042800.t1 | MTR_4g020470 | 56.828 | 227 | 97 | 1 | 1 | 226 | 1 | 227 | 5.58e-88 | 260 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042800.t1 | AT3G55620 | 87.755 | 245 | 30 | 0 | 1 | 245 | 1 | 245 | 6.33e-166 | 458 |
| MS.gene042800.t1 | AT2G39820 | 68.421 | 247 | 76 | 2 | 1 | 245 | 1 | 247 | 1.48e-124 | 353 |
Find 54 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAGAATAATTGTGATAT+TGG | 0.268648 | 6.3:+65254054 | MS.gene042800:CDS |
| CTTCAAGTTCCTTTGGTTGC+CGG | 0.291650 | 6.3:+65255902 | MS.gene042800:CDS |
| TACACTTCTTCAAGTTCCTT+TGG | 0.320574 | 6.3:+65255895 | MS.gene042800:CDS |
| AAGTTCGTCCAAATCTTCTA+TGG | 0.366027 | 6.3:-65255870 | None:intergenic |
| TCACACATCCATAGAAGATT+TGG | 0.368751 | 6.3:+65255862 | MS.gene042800:CDS |
| GAGATAATTGCAGATGTTCT+AGG | 0.386492 | 6.3:+65255668 | MS.gene042800:CDS |
| AGTGTATTTGAATCTGAGTT+AGG | 0.408530 | 6.3:+65254273 | MS.gene042800:intron |
| TCTCTCCAACAGAGGTGGTT+TGG | 0.412289 | 6.3:+65255748 | MS.gene042800:CDS |
| ATCGTTGGTCGTCTTTGTGC+TGG | 0.443039 | 6.3:+65254339 | MS.gene042800:CDS |
| CTCTGAACAACAACTTGATC+AGG | 0.445103 | 6.3:-65255065 | None:intergenic |
| TCACTCACACCGATCTTGAC+AGG | 0.453197 | 6.3:+65255147 | MS.gene042800:CDS |
| ACTACCTCTGTTAACTGTTC+CGG | 0.454403 | 6.3:-65255921 | None:intergenic |
| ATTGCTGGCAACATTCTTGT+TGG | 0.471557 | 6.3:+65255713 | MS.gene042800:CDS |
| GTGGTGAAGACATCTATTGC+TGG | 0.480770 | 6.3:+65254309 | MS.gene042800:CDS |
| TATTGTATGGTTGCCATTGG+AGG | 0.485440 | 6.3:+65254102 | MS.gene042800:CDS |
| TTCTGTGCTCTCTCCAACAG+AGG | 0.487293 | 6.3:+65255740 | MS.gene042800:CDS |
| CCTTGATCTGTGGTGGTATG+AGG | 0.488742 | 6.3:-65254555 | None:intergenic |
| ACTCACCAATGGCTATTGTA+TGG | 0.495688 | 6.3:+65254089 | MS.gene042800:CDS |
| ACTCACCAAACCACCTCTGT+TGG | 0.499764 | 6.3:-65255753 | None:intergenic |
| CCTCATACCACCACAGATCA+AGG | 0.502719 | 6.3:+65254555 | MS.gene042800:CDS |
| GAGGCTCTGAAAGCTTCTAC+AGG | 0.505269 | 6.3:+65254121 | MS.gene042800:CDS |
| GGTAGTGAAGTGATAGGTGC+TGG | 0.508313 | 6.3:+65255938 | MS.gene042800:CDS |
| GCAATAGATGTCTTCACCAC+AGG | 0.510708 | 6.3:-65254306 | None:intergenic |
| GGCTATTGTATGGTTGCCAT+TGG | 0.513966 | 6.3:+65254099 | MS.gene042800:CDS |
| CTGGAATGATAGTTAACGAT+TGG | 0.523514 | 6.3:+65255957 | MS.gene042800:CDS |
| AACAAGAATGTTGCCAGCAA+TGG | 0.532746 | 6.3:-65255711 | None:intergenic |
| GTGTCATCGTCGACGAGATG+AGG | 0.533091 | 6.3:+65256062 | MS.gene042800:CDS |
| AACAGAGGTAGTGAAGTGAT+AGG | 0.536192 | 6.3:+65255932 | MS.gene042800:CDS |
| TGTGCTCTCTCCAACAGAGG+TGG | 0.541463 | 6.3:+65255743 | MS.gene042800:CDS |
| ATTGCTGGCACTCGCATCGT+TGG | 0.543075 | 6.3:+65254324 | MS.gene042800:CDS |
| GTCTCACTTACTAGTTGCCA+TGG | 0.548761 | 6.3:-65253922 | None:intergenic |
| CTGATCAAGTTGTTGTTCAG+AGG | 0.557204 | 6.3:+65255066 | MS.gene042800:CDS |
| GGCAACCATACAATAGCCAT+TGG | 0.578367 | 6.3:-65254094 | None:intergenic |
| AGACAATACCCTGTCAAGAT+CGG | 0.580796 | 6.3:-65255156 | None:intergenic |
| CACTCACACCGATCTTGACA+GGG | 0.591246 | 6.3:+65255148 | MS.gene042800:CDS |
| TTAACTGTTCCGGCAACCAA+AGG | 0.600236 | 6.3:-65255911 | None:intergenic |
| TGACTCATAGGAAACAAGAA+TGG | 0.602241 | 6.3:+65254522 | MS.gene042800:intron |
| TGGTGGTATGAGGCAAGAGA+AGG | 0.604750 | 6.3:-65254545 | None:intergenic |
| CAATAGATGTCTTCACCACA+GGG | 0.605043 | 6.3:-65254305 | None:intergenic |
| GGAATTACCTTGATCTGTGG+TGG | 0.608310 | 6.3:-65254562 | None:intergenic |
| ATAATTTGTTCAGGAAACTG+AGG | 0.616944 | 6.3:+65255646 | MS.gene042800:intron |
| ATCTCGTCGACGATGACACT+AGG | 0.625842 | 6.3:-65256058 | None:intergenic |
| GTGTTCTCTAAACTCACCAA+TGG | 0.639959 | 6.3:+65254078 | MS.gene042800:CDS |
| CTTCTATGGATGTGTGAGGG+TGG | 0.640894 | 6.3:-65255856 | None:intergenic |
| ATAGGAATTACCTTGATCTG+TGG | 0.648429 | 6.3:-65254565 | None:intergenic |
| CGGTGTGAGTGAGAGCCACA+TGG | 0.649183 | 6.3:-65255136 | None:intergenic |
| GAAGCTTTCAGAGCCTCCAA+TGG | 0.650732 | 6.3:-65254115 | None:intergenic |
| AACAGAGAGTTCTGTTGCTG+TGG | 0.652234 | 6.3:-65256002 | None:intergenic |
| AAATCTTCTATGGATGTGTG+AGG | 0.657448 | 6.3:-65255860 | None:intergenic |
| GTATTTGAATCTGAGTTAGG+TGG | 0.687187 | 6.3:+65254276 | MS.gene042800:CDS |
| AATCTTCTATGGATGTGTGA+GGG | 0.705765 | 6.3:-65255859 | None:intergenic |
| GTTGCCGGAACAGTTAACAG+AGG | 0.724935 | 6.3:+65255917 | MS.gene042800:CDS |
| GTTAGGTGGTGTTATCCCTG+TGG | 0.725866 | 6.3:+65254290 | MS.gene042800:CDS |
| TATAGCATGTAATGACCATG+TGG | 0.744225 | 6.3:+65255121 | MS.gene042800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATAAATTTATGTATAA+AGG | - | chr6.3:65255581-65255600 | None:intergenic | 10.0% |
| !! | ACTAAATGAATAAAGTAATA+TGG | + | chr6.3:65254240-65254259 | MS.gene042800:intron | 15.0% |
| !! | ATAAAGGAAAAAATATTGAA+AGG | - | chr6.3:65254866-65254885 | None:intergenic | 15.0% |
| !! | TAATGGTTATGATTTAAAAA+TGG | - | chr6.3:65254473-65254492 | None:intergenic | 15.0% |
| !! | TTACTATATTGAATGATTAT+TGG | + | chr6.3:65254013-65254032 | MS.gene042800:intron | 15.0% |
| !!! | TATATGTTGTTGATTATTTT+TGG | + | chr6.3:65254594-65254613 | MS.gene042800:intron | 15.0% |
| !!! | TTGTAAAATATAATTTGTTC+AGG | + | chr6.3:65255637-65255656 | MS.gene042800:intron | 15.0% |
| !!! | TTTTTAATTTGTATGAATCT+CGG | + | chr6.3:65255598-65255617 | MS.gene042800:intron | 15.0% |
| !! | AAATACAATCAATACCATAT+TGG | - | chr6.3:65255001-65255020 | None:intergenic | 20.0% |
| !! | AACTAATGAAAATAAGTTCT+TGG | + | chr6.3:65254160-65254179 | MS.gene042800:intron | 20.0% |
| !! | ACGGTTAAAATTATAAAACA+AGG | - | chr6.3:65255381-65255400 | None:intergenic | 20.0% |
| !! | ACTAATGAAAATAAGTTCTT+GGG | + | chr6.3:65254161-65254180 | MS.gene042800:intron | 20.0% |
| !! | ATATGGTTTGAAGATATAAT+GGG | - | chr6.3:65255555-65255574 | None:intergenic | 20.0% |
| !! | ATCAATATCAGCAAAAATAA+AGG | - | chr6.3:65254882-65254901 | None:intergenic | 20.0% |
| !! | CAACAACATATAATAACAAT+AGG | - | chr6.3:65254586-65254605 | None:intergenic | 20.0% |
| !! | CGGTTAAAATTATAAAACAA+GGG | - | chr6.3:65255380-65255399 | None:intergenic | 20.0% |
| !! | GTATAACTATAATCAAAAGA+CGG | - | chr6.3:65255823-65255842 | None:intergenic | 20.0% |
| !! | TTTATGTATAAAGGAAGATA+TGG | - | chr6.3:65255572-65255591 | None:intergenic | 20.0% |
| !! | TTTGAGAATAATTGTGATAT+TGG | + | chr6.3:65254054-65254073 | MS.gene042800:CDS | 20.0% |
| !!! | CAATTTAAGTTACTTGAATT+TGG | + | chr6.3:65254185-65254204 | MS.gene042800:intron | 20.0% |
| !!! | GATTGAGTTGTTAAAATTTA+TGG | - | chr6.3:65255350-65255369 | None:intergenic | 20.0% |
| !!! | TTTTGTTATGTTCATAGAAA+CGG | - | chr6.3:65254772-65254791 | None:intergenic | 20.0% |
| ! | AAATTCTCTATGATTTAGGA+TGG | + | chr6.3:65254928-65254947 | MS.gene042800:intron | 25.0% |
| ! | AAGACCAACAAAACTTTATA+AGG | - | chr6.3:65255428-65255447 | None:intergenic | 25.0% |
| ! | AATCTCTCATTTATAGAGTA+GGG | + | chr6.3:65255491-65255510 | MS.gene042800:intron | 25.0% |
| ! | AATGAAAAGGTAAGTTAGTT+AGG | - | chr6.3:65254503-65254522 | None:intergenic | 25.0% |
| ! | AATGTTGTTGAATAAGGAAA+TGG | + | chr6.3:65255280-65255299 | MS.gene042800:intron | 25.0% |
| ! | AATTACAAATGTGTTCGAAT+AGG | - | chr6.3:65254656-65254675 | None:intergenic | 25.0% |
| ! | AGAAGAAAAATTATCTGCTT+TGG | + | chr6.3:65255091-65255110 | MS.gene042800:CDS | 25.0% |
| ! | GAAGAAAAATTATCTGCTTT+GGG | + | chr6.3:65255092-65255111 | MS.gene042800:CDS | 25.0% |
| ! | GATATGGTTTGAAGATATAA+TGG | - | chr6.3:65255556-65255575 | None:intergenic | 25.0% |
| ! | GTGAAACATAAGATACAAAA+GGG | - | chr6.3:65254979-65254998 | None:intergenic | 25.0% |
| ! | TAATCTCTCATTTATAGAGT+AGG | + | chr6.3:65255490-65255509 | MS.gene042800:intron | 25.0% |
| ! | TATCTTATGTTTCACCAATA+TGG | + | chr6.3:65254984-65255003 | MS.gene042800:intron | 25.0% |
| ! | TATGTTAATATGATGTAGCA+TGG | + | chr6.3:65254630-65254649 | MS.gene042800:intron | 25.0% |
| ! | TGAAACATAAGATACAAAAG+GGG | - | chr6.3:65254978-65254997 | None:intergenic | 25.0% |
| ! | TGAATAACTGATAATAAGAG+AGG | - | chr6.3:65255206-65255225 | None:intergenic | 25.0% |
| !! | CAGTTATTCATGTTTAAGAT+TGG | + | chr6.3:65255216-65255235 | MS.gene042800:intron | 25.0% |
| !! | TTTGTTATGTTCATAGAAAC+GGG | - | chr6.3:65254771-65254790 | None:intergenic | 25.0% |
| !!! | AATGATTATTGGTTTTCTTC+AGG | + | chr6.3:65254024-65254043 | MS.gene042800:intron | 25.0% |
| !!! | AGAACCTTATAAAGTTTTGT+TGG | + | chr6.3:65255421-65255440 | MS.gene042800:intron | 25.0% |
| !!! | ATGGAAAAGGTATGAATTTT+AGG | - | chr6.3:65255795-65255814 | None:intergenic | 25.0% |
| !!! | TGGAAAAGGTATGAATTTTA+GGG | - | chr6.3:65255794-65255813 | None:intergenic | 25.0% |
| !!! | TGGTATTGATTGTATTTTCA+TGG | + | chr6.3:65255004-65255023 | MS.gene042800:intron | 25.0% |
| AAATATGACAAAACCATCTC+AGG | - | chr6.3:65254416-65254435 | None:intergenic | 30.0% | |
| AACGAATCAATAGCAAATGA+GGG | - | chr6.3:65254379-65254398 | None:intergenic | 30.0% | |
| AGCACAAATGTTGTTGAATA+AGG | + | chr6.3:65255274-65255293 | MS.gene042800:intron | 30.0% | |
| AGTGTATTTGAATCTGAGTT+AGG | + | chr6.3:65254273-65254292 | MS.gene042800:intron | 30.0% | |
| ATAAGATCTTCAGAGGAAAA+AGG | - | chr6.3:65254680-65254699 | None:intergenic | 30.0% | |
| ATCTCTCATTTATAGAGTAG+GGG | + | chr6.3:65255492-65255511 | MS.gene042800:intron | 30.0% | |
| GAAACATAAGATACAAAAGG+GGG | - | chr6.3:65254977-65254996 | None:intergenic | 30.0% | |
| GGACAAATTCTCTATGATTT+AGG | + | chr6.3:65254924-65254943 | MS.gene042800:intron | 30.0% | |
| GGTGAAACATAAGATACAAA+AGG | - | chr6.3:65254980-65254999 | None:intergenic | 30.0% | |
| GTCCAAATGAAAACATGTTA+CGG | - | chr6.3:65254908-65254927 | None:intergenic | 30.0% | |
| GTTAGTTAGGTACGATATAA+TGG | - | chr6.3:65254490-65254509 | None:intergenic | 30.0% | |
| TAACGAATCAATAGCAAATG+AGG | - | chr6.3:65254380-65254399 | None:intergenic | 30.0% | |
| TAATCAAAAGACGGTATACA+TGG | - | chr6.3:65255814-65255833 | None:intergenic | 30.0% | |
| TTGTTATGTTCATAGAAACG+GGG | - | chr6.3:65254770-65254789 | None:intergenic | 30.0% | |
| TTTCCTATGAGTCAATGAAA+AGG | - | chr6.3:65254516-65254535 | None:intergenic | 30.0% | |
| ! | CGAACAGTTTGAAATTGTTA+TGG | + | chr6.3:65254211-65254230 | MS.gene042800:intron | 30.0% |
| !! | ATAATTTGTTCAGGAAACTG+AGG | + | chr6.3:65255646-65255665 | MS.gene042800:intron | 30.0% |
| !! | CATTTGCTATTGATTCGTTA+AGG | + | chr6.3:65254380-65254399 | MS.gene042800:intron | 30.0% |
| !! | GGAAAAGGTATGAATTTTAG+GGG | - | chr6.3:65255793-65255812 | None:intergenic | 30.0% |
| !!! | TTACCTTTTCATTGACTCAT+AGG | + | chr6.3:65254510-65254529 | MS.gene042800:intron | 30.0% |
| AAAGACGGTATACATGGAAA+AGG | - | chr6.3:65255808-65255827 | None:intergenic | 35.0% | |
| AAATCTTCTATGGATGTGTG+AGG | - | chr6.3:65255863-65255882 | None:intergenic | 35.0% | |
| AAGTTCGTCCAAATCTTCTA+TGG | - | chr6.3:65255873-65255892 | None:intergenic | 35.0% | |
| AATCTTCTATGGATGTGTGA+GGG | - | chr6.3:65255862-65255881 | None:intergenic | 35.0% | |
| AGGATTATTCATTCCTGAGA+TGG | + | chr6.3:65254400-65254419 | MS.gene042800:intron | 35.0% | |
| ATAGGAATTACCTTGATCTG+TGG | - | chr6.3:65254568-65254587 | None:intergenic | 35.0% | |
| CAGACAACAATCAGAATCAT+TGG | - | chr6.3:65254725-65254744 | None:intergenic | 35.0% | |
| CTGGAATGATAGTTAACGAT+TGG | + | chr6.3:65255957-65255976 | MS.gene042800:CDS | 35.0% | |
| GAGATAATTGCAGATGTTCT+AGG | + | chr6.3:65255668-65255687 | MS.gene042800:CDS | 35.0% | |
| GTATTTGAATCTGAGTTAGG+TGG | + | chr6.3:65254276-65254295 | MS.gene042800:CDS | 35.0% | |
| GTTTGACATAAGATCTTCAG+AGG | - | chr6.3:65254687-65254706 | None:intergenic | 35.0% | |
| TATAGCATGTAATGACCATG+TGG | + | chr6.3:65255121-65255140 | MS.gene042800:CDS | 35.0% | |
| TATAGTTATACGCATGATGC+AGG | + | chr6.3:65255832-65255851 | MS.gene042800:intron | 35.0% | |
| TCACACATCCATAGAAGATT+TGG | + | chr6.3:65255862-65255881 | MS.gene042800:CDS | 35.0% | |
| TGACTCATAGGAAACAAGAA+TGG | + | chr6.3:65254522-65254541 | MS.gene042800:intron | 35.0% | |
| ! | AACGATTGGACATCATTTTG+CGG | + | chr6.3:65255971-65255990 | MS.gene042800:CDS | 35.0% |
| ! | AGCCGTAACATGTTTTCATT+TGG | + | chr6.3:65254903-65254922 | MS.gene042800:intron | 35.0% |
| ! | TACACTTCTTCAAGTTCCTT+TGG | + | chr6.3:65255895-65255914 | MS.gene042800:CDS | 35.0% |
| !! | CATGTGTGTGTGTTACTTAA+TGG | + | chr6.3:65253966-65253985 | MS.gene042800:intron | 35.0% |
| !! | TTCTAGGAGTAGAAGTTTTC+AGG | + | chr6.3:65255684-65255703 | MS.gene042800:CDS | 35.0% |
| !!! | TGAGAGTGTTTTCAAGTTGA+GGG | + | chr6.3:65256027-65256046 | MS.gene042800:CDS | 35.0% |
| !!! | TTGAGAGTGTTTTCAAGTTG+AGG | + | chr6.3:65256026-65256045 | MS.gene042800:CDS | 35.0% |
| AACAAGAATGTTGCCAGCAA+TGG | - | chr6.3:65255714-65255733 | None:intergenic | 40.0% | |
| AACAGAGGTAGTGAAGTGAT+AGG | + | chr6.3:65255932-65255951 | MS.gene042800:CDS | 40.0% | |
| ACTACCTCTGTTAACTGTTC+CGG | - | chr6.3:65255924-65255943 | None:intergenic | 40.0% | |
| ACTCACCAATGGCTATTGTA+TGG | + | chr6.3:65254089-65254108 | MS.gene042800:CDS | 40.0% | |
| AGACAATACCCTGTCAAGAT+CGG | - | chr6.3:65255159-65255178 | None:intergenic | 40.0% | |
| ATTGCGATTTGTGATGCATG+TGG | + | chr6.3:65255464-65255483 | MS.gene042800:intron | 40.0% | |
| ATTGCTGGCAACATTCTTGT+TGG | + | chr6.3:65255713-65255732 | MS.gene042800:CDS | 40.0% | |
| CAATAGATGTCTTCACCACA+GGG | - | chr6.3:65254308-65254327 | None:intergenic | 40.0% | |
| CTCTGAACAACAACTTGATC+AGG | - | chr6.3:65255068-65255087 | None:intergenic | 40.0% | |
| GTGTTCTCTAAACTCACCAA+TGG | + | chr6.3:65254078-65254097 | MS.gene042800:CDS | 40.0% | |
| TATTGTATGGTTGCCATTGG+AGG | + | chr6.3:65254102-65254121 | MS.gene042800:CDS | 40.0% | |
| TTATCAACGCTCTAGTCTCT+AGG | + | chr6.3:65254838-65254857 | MS.gene042800:intron | 40.0% | |
| ! | AGCAGAGAACTGAAGTACTA+CGG | - | chr6.3:65255400-65255419 | None:intergenic | 40.0% |
| ! | CTGATCAAGTTGTTGTTCAG+AGG | + | chr6.3:65255066-65255085 | MS.gene042800:CDS | 40.0% |
| ! | TTGGACATCATTTTGCGGTT+CGG | + | chr6.3:65255976-65255995 | MS.gene042800:CDS | 40.0% |
| AACAGAGAGTTCTGTTGCTG+TGG | - | chr6.3:65256005-65256024 | None:intergenic | 45.0% | |
| GCAATAGATGTCTTCACCAC+AGG | - | chr6.3:65254309-65254328 | None:intergenic | 45.0% | |
| GGAATTACCTTGATCTGTGG+TGG | - | chr6.3:65254565-65254584 | None:intergenic | 45.0% | |
| GGCAACCATACAATAGCCAT+TGG | - | chr6.3:65254097-65254116 | None:intergenic | 45.0% | |
| GGCTATTGTATGGTTGCCAT+TGG | + | chr6.3:65254099-65254118 | MS.gene042800:CDS | 45.0% | |
| GTGGTGAAGACATCTATTGC+TGG | + | chr6.3:65254309-65254328 | MS.gene042800:CDS | 45.0% | |
| TTAACTGTTCCGGCAACCAA+AGG | - | chr6.3:65255914-65255933 | None:intergenic | 45.0% | |
| ! | CTTCAAGTTCCTTTGGTTGC+CGG | + | chr6.3:65255902-65255921 | MS.gene042800:CDS | 45.0% |
| ACTCACCAAACCACCTCTGT+TGG | - | chr6.3:65255756-65255775 | None:intergenic | 50.0% | |
| ATCGTTGGTCGTCTTTGTGC+TGG | + | chr6.3:65254339-65254358 | MS.gene042800:CDS | 50.0% | |
| ATCTCGTCGACGATGACACT+AGG | - | chr6.3:65256061-65256080 | None:intergenic | 50.0% | |
| CACTCACACCGATCTTGACA+GGG | + | chr6.3:65255148-65255167 | MS.gene042800:CDS | 50.0% | |
| CCTCATACCACCACAGATCA+AGG | + | chr6.3:65254555-65254574 | MS.gene042800:CDS | 50.0% | |
| CCTTGATCTGTGGTGGTATG+AGG | - | chr6.3:65254558-65254577 | None:intergenic | 50.0% | |
| CTTCTATGGATGTGTGAGGG+TGG | - | chr6.3:65255859-65255878 | None:intergenic | 50.0% | |
| GAAGCTTTCAGAGCCTCCAA+TGG | - | chr6.3:65254118-65254137 | None:intergenic | 50.0% | |
| GGTAGTGAAGTGATAGGTGC+TGG | + | chr6.3:65255938-65255957 | MS.gene042800:CDS | 50.0% | |
| GTTGCCGGAACAGTTAACAG+AGG | + | chr6.3:65255917-65255936 | MS.gene042800:CDS | 50.0% | |
| TCACTCACACCGATCTTGAC+AGG | + | chr6.3:65255147-65255166 | MS.gene042800:CDS | 50.0% | |
| TCTCTCCAACAGAGGTGGTT+TGG | + | chr6.3:65255748-65255767 | MS.gene042800:CDS | 50.0% | |
| TGGTGGTATGAGGCAAGAGA+AGG | - | chr6.3:65254548-65254567 | None:intergenic | 50.0% | |
| TTCTGTGCTCTCTCCAACAG+AGG | + | chr6.3:65255740-65255759 | MS.gene042800:CDS | 50.0% | |
| !! | GAGGCTCTGAAAGCTTCTAC+AGG | + | chr6.3:65254121-65254140 | MS.gene042800:CDS | 50.0% |
| !! | GTTAGGTGGTGTTATCCCTG+TGG | + | chr6.3:65254290-65254309 | MS.gene042800:CDS | 50.0% |
| !! | GTTTTCAGGCAGACCATTGC+TGG | + | chr6.3:65255698-65255717 | MS.gene042800:CDS | 50.0% |
| ATTGCTGGCACTCGCATCGT+TGG | + | chr6.3:65254324-65254343 | MS.gene042800:CDS | 55.0% | |
| GTGTCATCGTCGACGAGATG+AGG | + | chr6.3:65256062-65256081 | MS.gene042800:CDS | 55.0% | |
| TGTGCTCTCTCCAACAGAGG+TGG | + | chr6.3:65255743-65255762 | MS.gene042800:CDS | 55.0% | |
| CGGTGTGAGTGAGAGCCACA+TGG | - | chr6.3:65255139-65255158 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 65253924 | 65256111 | 65253924 | ID=MS.gene042800 |
| chr6.3 | mRNA | 65253924 | 65256111 | 65253924 | ID=MS.gene042800.t1;Parent=MS.gene042800 |
| chr6.3 | exon | 65253924 | 65253933 | 65253924 | ID=MS.gene042800.t1.exon1;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65253924 | 65253933 | 65253924 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65254046 | 65254142 | 65254046 | ID=MS.gene042800.t1.exon2;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65254046 | 65254142 | 65254046 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65254275 | 65254360 | 65254275 | ID=MS.gene042800.t1.exon3;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65254275 | 65254360 | 65254275 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65254532 | 65254576 | 65254532 | ID=MS.gene042800.t1.exon4;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65254532 | 65254576 | 65254532 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65255039 | 65255169 | 65255039 | ID=MS.gene042800.t1.exon5;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65255039 | 65255169 | 65255039 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65255659 | 65255769 | 65255659 | ID=MS.gene042800.t1.exon6;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65255659 | 65255769 | 65255659 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| chr6.3 | exon | 65255854 | 65256111 | 65255854 | ID=MS.gene042800.t1.exon7;Parent=MS.gene042800.t1 |
| chr6.3 | CDS | 65255854 | 65256111 | 65255854 | ID=cds.MS.gene042800.t1;Parent=MS.gene042800.t1 |
| Gene Sequence |
| Protein sequence |
