Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27050.t1 | XP_024631199.1 | 93.5 | 1069 | 23 | 1 | 1 | 1023 | 1 | 1069 | 0.00E+00 | 1925.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27050.t1 | Q9FQ03 | 67.5 | 911 | 213 | 10 | 1 | 844 | 1 | 895 | 0.0e+00 | 1198.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27050.t1 | A0A396JH84 | 93.5 | 1069 | 23 | 1 | 1 | 1023 | 1 | 1069 | 0.0e+00 | 1925.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene27050 | MS.gene93636 | PPI |
MS.gene27050 | MS.gene069519 | PPI |
MS.gene050503 | MS.gene27050 | PPI |
MS.gene27050 | MS.gene44813 | PPI |
MS.gene27050 | MS.gene44029 | PPI |
MS.gene27050 | MS.gene75866 | PPI |
MS.gene27050 | MS.gene042800 | PPI |
MS.gene27050 | MS.gene026063 | PPI |
MS.gene27050 | MS.gene024595 | PPI |
MS.gene27050 | MS.gene69915 | PPI |
MS.gene27050 | MS.gene83265 | PPI |
MS.gene27050 | MS.gene062648 | PPI |
MS.gene27050 | MS.gene70800 | PPI |
MS.gene27050 | MS.gene033864 | PPI |
MS.gene27050 | MS.gene43700 | PPI |
MS.gene27050 | MS.gene005159 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27050.t1 | MTR_4g051920 | 39.792 | 867 | 315 | 16 | 1 | 799 | 1 | 728 | 0.0 | 569 |
MS.gene27050.t1 | MTR_7g114570 | 60.628 | 414 | 113 | 4 | 1 | 365 | 1 | 413 | 1.64e-155 | 485 |
MS.gene27050.t1 | MTR_7g114570 | 48.429 | 382 | 169 | 6 | 489 | 869 | 439 | 793 | 3.91e-105 | 351 |
MS.gene27050.t1 | MTR_7g114570 | 60.628 | 414 | 113 | 4 | 1 | 365 | 1 | 413 | 2.10e-155 | 485 |
MS.gene27050.t1 | MTR_7g114570 | 52.994 | 334 | 150 | 3 | 489 | 822 | 439 | 765 | 1.71e-109 | 363 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene27050.t1 | AT1G75660 | 61.266 | 1074 | 273 | 16 | 1 | 989 | 1 | 1016 | 0.0 | 1179 |
MS.gene27050.t1 | AT5G42540 | 56.614 | 892 | 301 | 12 | 1 | 826 | 1 | 872 | 0.0 | 946 |
MS.gene27050.t1 | AT5G42540 | 56.836 | 885 | 299 | 11 | 1 | 826 | 1 | 861 | 0.0 | 942 |
MS.gene27050.t1 | AT1G54490 | 61.682 | 428 | 111 | 5 | 1 | 380 | 1 | 423 | 7.26e-162 | 501 |
MS.gene27050.t1 | AT1G54490 | 48.411 | 409 | 190 | 7 | 461 | 868 | 412 | 800 | 3.82e-110 | 364 |
MS.gene27050.t1 | AT1G54490 | 69.486 | 331 | 94 | 4 | 51 | 380 | 41 | 365 | 3.97e-143 | 451 |
MS.gene27050.t1 | AT1G54490 | 48.411 | 409 | 190 | 7 | 461 | 868 | 354 | 742 | 5.42e-111 | 365 |
Find 308 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAAATTTAATACCTTCTT+TGG | 0.154456 | 1.1:+838270 | None:intergenic |
TTGTCATATTCAAGGTTATT+AGG | 0.192550 | 1.1:+846329 | None:intergenic |
GTTTGTAGTTTCTGAATATT+TGG | 0.223066 | 1.1:-843671 | MS.gene27050:intron |
GTTATTAGGGTTGGGTTTGC+TGG | 0.232803 | 1.1:+846343 | None:intergenic |
TCAGGAGAATTTGATGAAAA+AGG | 0.233715 | 1.1:-843807 | MS.gene27050:CDS |
TGCTCGACTCTGCTCAAATT+TGG | 0.250358 | 1.1:+843055 | None:intergenic |
AAACCATTTGACCAGCTTCT+TGG | 0.251621 | 1.1:-839698 | MS.gene27050:CDS |
AACCCACCAGGATCCGTTTC+TGG | 0.251823 | 1.1:-837891 | MS.gene27050:CDS |
AGCAGCGGTCAAGGCGGTTT+AGG | 0.258573 | 1.1:-845258 | MS.gene27050:CDS |
ATTGGATAAAAGTCAATAAT+TGG | 0.272607 | 1.1:+839516 | None:intergenic |
AACCTTGCCCTCCCATCTTC+AGG | 0.302826 | 1.1:-838582 | MS.gene27050:CDS |
TGACCCCTTGGTCCATTATA+AGG | 0.311010 | 1.1:+837771 | None:intergenic |
TCATGCCATGGAACAGGTTC+AGG | 0.320171 | 1.1:+838035 | None:intergenic |
ACTATGAAGGTGTTTGTTCT+TGG | 0.320479 | 1.1:-840669 | MS.gene27050:CDS |
ATCTTCAGGTCCCCTATTGC+AGG | 0.325511 | 1.1:-838568 | MS.gene27050:CDS |
ACTCGTTGCCAATTCCTTAC+AGG | 0.326993 | 1.1:-837841 | MS.gene27050:CDS |
TGATGAAGTGCGTCTTCTTC+AGG | 0.329315 | 1.1:-839245 | MS.gene27050:CDS |
AGACGCACTTCATCAATAAA+AGG | 0.333488 | 1.1:+839253 | None:intergenic |
TGTCATATTCAAGGTTATTA+GGG | 0.334764 | 1.1:+846330 | None:intergenic |
GTTCCATGGCATGAAGATAA+TGG | 0.335746 | 1.1:-838026 | MS.gene27050:CDS |
TTGGACTCTGAGGGAATATC+TGG | 0.336468 | 1.1:-843652 | MS.gene27050:CDS |
AATGATGTGATCTGGGGTTT+TGG | 0.339198 | 1.1:+837529 | None:intergenic |
AAAGTTGCCGACTCCTCTTT+AGG | 0.341764 | 1.1:+844600 | None:intergenic |
CTCTGAACGTGCTGATGTTA+AGG | 0.342982 | 1.1:-838929 | MS.gene27050:CDS |
ATCTGTTTCAAGACTATTCT+CGG | 0.343048 | 1.1:+842123 | None:intergenic |
GCAGCGGTCAAGGCGGTTTA+GGG | 0.344355 | 1.1:-845257 | MS.gene27050:CDS |
CCTGCACCATTTCAACAATC+TGG | 0.349992 | 1.1:-842247 | MS.gene27050:CDS |
CTTTCTGATGCAAATGTTCC+CGG | 0.352759 | 1.1:-844365 | MS.gene27050:CDS |
TTGATCTCAAAAGGAGCATT+AGG | 0.365067 | 1.1:+843612 | None:intergenic |
TAAGGCATCGTTGATCCATT+AGG | 0.366022 | 1.1:+837789 | None:intergenic |
CCGAGGAACTTGATGCTATA+CGG | 0.366750 | 1.1:-840827 | MS.gene27050:CDS |
AGATAACTTAGAAACTTTAC+TGG | 0.366849 | 1.1:+842180 | None:intergenic |
GGATCAACGATGCCTTATAA+TGG | 0.368145 | 1.1:-837783 | MS.gene27050:CDS |
ATCCTTCAAGATTTCTTTGA+AGG | 0.370209 | 1.1:+844309 | None:intergenic |
AACCTTGAGTATTTGAAAAC+CGG | 0.371404 | 1.1:+837439 | None:intergenic |
ATGTCTTCCATGCCTGCAAT+AGG | 0.371620 | 1.1:+838556 | None:intergenic |
CAATGCTGATCAGCTCTATA+TGG | 0.371716 | 1.1:+837360 | None:intergenic |
AGTATACAAGAAGGAACTTA+AGG | 0.372016 | 1.1:-843220 | MS.gene27050:CDS |
TACAGGCAATGTCGTGTATT+CGG | 0.372138 | 1.1:+844281 | None:intergenic |
AAAGTTTCTAAGTTATCTTC+AGG | 0.374317 | 1.1:-842175 | MS.gene27050:CDS |
CACACCTGGAACTGAATTCA+TGG | 0.374752 | 1.1:-844562 | MS.gene27050:CDS |
AGAAATAGCCACTATGTTAA+TGG | 0.377414 | 1.1:-837501 | MS.gene27050:CDS |
CCTAGTGGGTACAGGGAATA+TGG | 0.377973 | 1.1:-837321 | MS.gene27050:CDS |
ATTTCTTTGAAGGCGGATAT+AGG | 0.382834 | 1.1:+844319 | None:intergenic |
GTGCTTCCTGTGTGGTCAAA+TGG | 0.383093 | 1.1:-843871 | MS.gene27050:CDS |
AATAGATACCATCATCCTAA+TGG | 0.384293 | 1.1:-837804 | MS.gene27050:CDS |
TTCTACAGACTGTGACAATT+GGG | 0.384381 | 1.1:-838067 | MS.gene27050:intron |
CGTCCTGACCTGTAAGGAAT+TGG | 0.385471 | 1.1:+837833 | None:intergenic |
TACAGTACTATGTGCATCTT+AGG | 0.385595 | 1.1:-844521 | MS.gene27050:CDS |
TTTCTACAGACTGTGACAAT+TGG | 0.386647 | 1.1:-838068 | MS.gene27050:intron |
CTTAATATTAACTTTGAGTT+GGG | 0.387432 | 1.1:-839731 | MS.gene27050:CDS |
TCTATCAGAATGATGTGATC+TGG | 0.388366 | 1.1:+837521 | None:intergenic |
AATACACGACATTGCCTGTA+TGG | 0.389284 | 1.1:-844278 | MS.gene27050:CDS |
TCTCCATACTATGGGAGTTC+CGG | 0.389495 | 1.1:-846465 | None:intergenic |
GGTATTACAGGTGGAGAGTA+TGG | 0.389915 | 1.1:+837594 | None:intergenic |
CCCCTTTGCGTCTGATCTGA+AGG | 0.393708 | 1.1:-839765 | MS.gene27050:CDS |
CTCTATATGGTTGGAAGTGT+TGG | 0.394684 | 1.1:+837373 | None:intergenic |
GCTGCTCCTACTGCACATTA+TGG | 0.405895 | 1.1:-837627 | MS.gene27050:CDS |
TGATGAGGACTAGGTATTAC+AGG | 0.407354 | 1.1:+837582 | None:intergenic |
CTGTGCACCAACCTTTCAAC+GGG | 0.411150 | 1.1:+838895 | None:intergenic |
TCCGTTTCTGGTCGGGAGCT+TGG | 0.411513 | 1.1:-837879 | MS.gene27050:CDS |
TGATTTGATTATGTTGGGTC+TGG | 0.412472 | 1.1:-844109 | MS.gene27050:CDS |
CGCCTTCAAAGAAATCTTGA+AGG | 0.414724 | 1.1:-844311 | MS.gene27050:CDS |
TATTCAAGGTTATTAGGGTT+GGG | 0.417046 | 1.1:+846335 | None:intergenic |
TACTGTGGAGGAGCTGATAA+AGG | 0.417650 | 1.1:+837663 | None:intergenic |
ACCAGGATCCGTTTCTGGTC+GGG | 0.419690 | 1.1:-837886 | MS.gene27050:CDS |
TGTCTTCCATGCCTGCAATA+GGG | 0.420068 | 1.1:+838557 | None:intergenic |
AATTTATTTGCGATTATGAC+CGG | 0.423872 | 1.1:+837233 | None:intergenic |
TGCGTCTTCTTCAGGAAGTT+CGG | 0.425150 | 1.1:-839237 | MS.gene27050:CDS |
CTCGGCGAGCCACCTGTAGA+AGG | 0.426189 | 1.1:+846442 | None:intergenic |
GTCGTGATGGTGAACTTGAC+GGG | 0.429604 | 1.1:+837410 | None:intergenic |
GGTGGAATTGCAGCATAGCC+TGG | 0.429874 | 1.1:+837687 | None:intergenic |
TTCCATGGCATGAAGATAAT+GGG | 0.430805 | 1.1:-838025 | MS.gene27050:CDS |
ACAGCCATGAATTCAGTTCC+AGG | 0.433026 | 1.1:+844558 | None:intergenic |
TCCAAGCTCCCGACCAGAAA+CGG | 0.434588 | 1.1:+837878 | None:intergenic |
TTATCTTCATGCCATGGAAC+AGG | 0.435052 | 1.1:+838029 | None:intergenic |
AATCTTATGCTCCCCTTCAC+CGG | 0.435640 | 1.1:+844346 | None:intergenic |
AACCTTTACCTTGACATGAA+TGG | 0.439539 | 1.1:-846308 | MS.gene27050:intron |
ACGACATTGCCTGTATGGTT+TGG | 0.439709 | 1.1:-844273 | MS.gene27050:intron |
TTTCAGGTTGTATTTACTCC+TGG | 0.442978 | 1.1:-843903 | MS.gene27050:intron |
GATGCTGATTTGATTATGTT+GGG | 0.443465 | 1.1:-844114 | MS.gene27050:CDS |
AGCTGGTCAAATGGTTTGAA+TGG | 0.444594 | 1.1:+839704 | None:intergenic |
GGAAAGGCTAAAAGGAAGTC+AGG | 0.447502 | 1.1:-843825 | MS.gene27050:CDS |
GAAAAGAGCTCGAATGGAAC+AGG | 0.448592 | 1.1:-842990 | MS.gene27050:intron |
GGATGCTGATTTGATTATGT+TGG | 0.452745 | 1.1:-844115 | MS.gene27050:CDS |
TGGAGTTAAGTTTCCAAAGA+AGG | 0.455328 | 1.1:-838283 | MS.gene27050:intron |
GGTAAAGGTTGTCATATTCA+AGG | 0.455540 | 1.1:+846321 | None:intergenic |
TGGCAAACGCTATGCTTGGC+AGG | 0.456513 | 1.1:-839376 | MS.gene27050:intron |
CTATCAGAATGATGTGATCT+GGG | 0.457390 | 1.1:+837522 | None:intergenic |
TCTGATGTGTTCAACTCAAA+AGG | 0.458187 | 1.1:-841844 | MS.gene27050:CDS |
TCCTGGTTGGAGTAACATAA+AGG | 0.458871 | 1.1:-844487 | MS.gene27050:intron |
CATTCAAAATTGATCTCAAA+AGG | 0.459832 | 1.1:+843603 | None:intergenic |
CATAGATGGTGTTGCGCCTA+GGG | 0.460013 | 1.1:-845293 | MS.gene27050:intron |
ATAATGGACCAAGGGGTCAT+AGG | 0.461625 | 1.1:-837767 | MS.gene27050:CDS |
GCGTCTGATCTGAAGGGCCT+TGG | 0.463297 | 1.1:-839758 | MS.gene27050:CDS |
CAGATCAAGTTGGGAGAACC+AGG | 0.464029 | 1.1:-840894 | MS.gene27050:CDS |
CATTTCCGCCATTAACATAG+TGG | 0.465840 | 1.1:+837493 | None:intergenic |
TGGGAGTTCCGGCCTTCTAC+AGG | 0.466295 | 1.1:-846454 | MS.gene27050:CDS |
GCTATATGTTCATGTGCATC+TGG | 0.467409 | 1.1:+838318 | None:intergenic |
TGCAATAGGGGACCTGAAGA+TGG | 0.469373 | 1.1:+838570 | None:intergenic |
TTATGACCGGGTGGAGGCAT+TGG | 0.470724 | 1.1:+837246 | None:intergenic |
TTGCCAATTCCTTACAGGTC+AGG | 0.472289 | 1.1:-837836 | MS.gene27050:CDS |
CCCTTCAGATCAGACGCAAA+GGG | 0.473297 | 1.1:+839764 | None:intergenic |
TGCTTCCTGTGTGGTCAAAT+GGG | 0.473711 | 1.1:-843870 | MS.gene27050:CDS |
CCATATTCCCTGTACCCACT+AGG | 0.476150 | 1.1:+837321 | None:intergenic |
TAAACCGCCTTGACCGCTGC+TGG | 0.478840 | 1.1:+845260 | None:intergenic |
AATAACCATCGGGTATTTCT+CGG | 0.481607 | 1.1:+846424 | None:intergenic |
CGTGATTCATAGTTATAGCC+AGG | 0.481681 | 1.1:+837711 | None:intergenic |
GGGGTAACCCTAGTGGGTAC+AGG | 0.481749 | 1.1:-837329 | MS.gene27050:CDS |
ATATTCAAGGTTATTAGGGT+TGG | 0.482146 | 1.1:+846334 | None:intergenic |
ACTCCAAGAAGCTGGTCAAA+TGG | 0.483297 | 1.1:+839695 | None:intergenic |
ATGCAAATGTTCCCGGTGAA+GGG | 0.483331 | 1.1:-844358 | MS.gene27050:CDS |
GTGTGGTCAAATGGGTCATA+TGG | 0.483363 | 1.1:-843862 | MS.gene27050:CDS |
GCAAGGTTCTCCACTACATA+AGG | 0.488477 | 1.1:+838597 | None:intergenic |
GTGGGCCCAGATTGTTGAAA+TGG | 0.488546 | 1.1:+842241 | None:intergenic |
TTGGGTTTGCTGGTGTCTAT+CGG | 0.488877 | 1.1:+846353 | None:intergenic |
GCATAGATGGTGTTGCGCCT+AGG | 0.489442 | 1.1:-845294 | MS.gene27050:intron |
CTGCACCATTTCAACAATCT+GGG | 0.489707 | 1.1:-842246 | MS.gene27050:CDS |
CAAGGGGTCATAGGCAATCA+TGG | 0.492537 | 1.1:-837758 | MS.gene27050:CDS |
CAAGAAGGAACTTAAGGGAA+TGG | 0.493096 | 1.1:-843214 | MS.gene27050:CDS |
GTCTTCCATGCCTGCAATAG+GGG | 0.496088 | 1.1:+838558 | None:intergenic |
CCGTATAGCATCAAGTTCCT+CGG | 0.496492 | 1.1:+840827 | None:intergenic |
GCAGTAGGAGCAGCAGCATA+AGG | 0.496495 | 1.1:+837636 | None:intergenic |
CATGATTGCCTATGACCCCT+TGG | 0.500360 | 1.1:+837759 | None:intergenic |
GCTTAATATTAACTTTGAGT+TGG | 0.501013 | 1.1:-839732 | MS.gene27050:CDS |
CGTATAGCATCAAGTTCCTC+GGG | 0.501024 | 1.1:+840828 | None:intergenic |
TTACAGGTGGAGAGTATGGT+TGG | 0.503553 | 1.1:+837598 | None:intergenic |
AAGTCAATAATTGGCGAGGT+TGG | 0.503626 | 1.1:+839525 | None:intergenic |
TCCTTACAGGTCAGGACGGA+TGG | 0.504126 | 1.1:-837828 | MS.gene27050:CDS |
TGCAGGCATGGAAGACATCA+TGG | 0.506225 | 1.1:-838551 | MS.gene27050:CDS |
CAAGAAGAGGAGATGATGTT+GGG | 0.509524 | 1.1:-842342 | MS.gene27050:CDS |
CGATGCGGTCGAAGAGGAAC+CGG | 0.509530 | 1.1:-846399 | MS.gene27050:CDS |
ATCTAATAGAGAATATTGAT+TGG | 0.510599 | 1.1:+837287 | None:intergenic |
CATATAGAGCTGATCAGCAT+TGG | 0.510919 | 1.1:-837359 | MS.gene27050:CDS |
ATCTCTAGTGTAGGCATATG+TGG | 0.512186 | 1.1:+843528 | None:intergenic |
TCAAGTTGGGAGAACCAGGC+TGG | 0.512715 | 1.1:-840890 | MS.gene27050:CDS |
GCAAGAAGAGGAGATGATGT+TGG | 0.513968 | 1.1:-842343 | MS.gene27050:CDS |
GTGGAATTGCAGCATAGCCT+GGG | 0.514736 | 1.1:+837688 | None:intergenic |
TAATACCTCTCTCTCCAGCC+TGG | 0.514988 | 1.1:+840876 | None:intergenic |
CTTAGGTTGAACAATGATCC+TGG | 0.517293 | 1.1:-844504 | MS.gene27050:CDS |
TGTTGAAATGGTGCAGGCGT+TGG | 0.517474 | 1.1:+842253 | None:intergenic |
GTTTCCGATACGGCTCAGGC+AGG | 0.518483 | 1.1:+839559 | None:intergenic |
TTCTGAATATTTGGACTCTG+AGG | 0.518941 | 1.1:-843662 | MS.gene27050:CDS |
CAATATTCTCTATTAGATAG+AGG | 0.519144 | 1.1:-837282 | MS.gene27050:CDS |
TCTCAAACCCTGACCTGGAA+AGG | 0.519340 | 1.1:+843762 | None:intergenic |
TACCATTCATGTCAAGGTAA+AGG | 0.520866 | 1.1:+846306 | None:intergenic |
GATTCAAATGTCATCACACC+TGG | 0.521016 | 1.1:-844576 | MS.gene27050:CDS |
ATGCCCTGCCTGAGCCGTAT+CGG | 0.521180 | 1.1:-839563 | MS.gene27050:CDS |
CCAGATTGTTGAAATGGTGC+AGG | 0.521299 | 1.1:+842247 | None:intergenic |
ACTGTGAAGGAAAGGCTAAA+AGG | 0.521588 | 1.1:-843833 | MS.gene27050:CDS |
TCCATCCGTCCTGACCTGTA+AGG | 0.521872 | 1.1:+837827 | None:intergenic |
TGAACTCCTTCGATAACTAC+CGG | 0.522771 | 1.1:+846380 | None:intergenic |
GTATACAAGAAGGAACTTAA+GGG | 0.522861 | 1.1:-843219 | MS.gene27050:CDS |
AAGAAGGAACTTAAGGGAAT+GGG | 0.523737 | 1.1:-843213 | MS.gene27050:CDS |
ACATGCAGTGGTGGAATGAA+TGG | 0.525756 | 1.1:-838628 | MS.gene27050:CDS |
GACTTTGAAGTGGACATGAA+TGG | 0.526515 | 1.1:-839396 | MS.gene27050:CDS |
AAATGAACCAGCAGCGGTCA+AGG | 0.527447 | 1.1:-845267 | MS.gene27050:CDS |
ATTCCAGAAAAGAGCTCGAA+TGG | 0.528462 | 1.1:-842996 | MS.gene27050:CDS |
TCCCGACCAGAAACGGATCC+TGG | 0.529223 | 1.1:+837885 | None:intergenic |
CTATTTGACAAACGGTAGTA+AGG | 0.529407 | 1.1:-843187 | MS.gene27050:intron |
ATCTTATGCTCCCCTTCACC+GGG | 0.530616 | 1.1:+844347 | None:intergenic |
CTGGAGAGAGAGGTATTATG+AGG | 0.530735 | 1.1:-840871 | MS.gene27050:CDS |
CGTCGTGATGGTGAACTTGA+CGG | 0.531773 | 1.1:+837409 | None:intergenic |
TGACTTGAAAATAAAGCTGA+AGG | 0.531994 | 1.1:-841884 | MS.gene27050:CDS |
GACCTGAAGATGGGAGGGCA+AGG | 0.532251 | 1.1:+838580 | None:intergenic |
ATAAGTTTCCGATACGGCTC+AGG | 0.532311 | 1.1:+839555 | None:intergenic |
TGATCAGCATTGGACTCCAC+GGG | 0.532422 | 1.1:-837349 | MS.gene27050:CDS |
GCTGATCAGCTCTATATGGT+TGG | 0.533005 | 1.1:+837364 | None:intergenic |
CCCTTTGCGTCTGATCTGAA+GGG | 0.533829 | 1.1:-839764 | MS.gene27050:CDS |
TCTGAATATTTGGACTCTGA+GGG | 0.534393 | 1.1:-843661 | MS.gene27050:CDS |
GGGCCCACCTCAGTTAGAAA+AGG | 0.535977 | 1.1:-842226 | MS.gene27050:CDS |
GATGCAAATGTTCCCGGTGA+AGG | 0.536350 | 1.1:-844359 | MS.gene27050:CDS |
CAGGTCCCCTATTGCAGGCA+TGG | 0.538887 | 1.1:-838563 | MS.gene27050:CDS |
CAGAAAACTTCCTCCTAAAG+AGG | 0.540221 | 1.1:-844613 | MS.gene27050:CDS |
CTCCCATTATCTTCATGCCA+TGG | 0.545066 | 1.1:+838023 | None:intergenic |
TTCTGGTCGGGAGCTTGGAG+AGG | 0.545839 | 1.1:-837874 | MS.gene27050:CDS |
GAGTGATGTTGATGAGGACT+AGG | 0.546387 | 1.1:+837573 | None:intergenic |
GAGAACCAGGCTGGAGAGAG+AGG | 0.547290 | 1.1:-840881 | MS.gene27050:CDS |
AACATCAGCACGTTCAGAGT+TGG | 0.547653 | 1.1:+838933 | None:intergenic |
CGAGAGGAATTTGAGAGGGA+GGG | 0.549293 | 1.1:-844636 | MS.gene27050:CDS |
GATAGGCTATTGAAGAATCA+AGG | 0.551651 | 1.1:-844662 | MS.gene27050:intron |
AAGGTGTTTGTTCTTGGCAA+TGG | 0.552821 | 1.1:-840663 | MS.gene27050:intron |
TCGTTGATCCATTAGGATGA+TGG | 0.553524 | 1.1:+837796 | None:intergenic |
GTGATGCATTATTACTATGA+AGG | 0.554988 | 1.1:-840682 | MS.gene27050:CDS |
ACCTTGAGTATTTGAAAACC+GGG | 0.555291 | 1.1:+837440 | None:intergenic |
TGAATGGCAAACGCTATGCT+TGG | 0.558291 | 1.1:-839380 | MS.gene27050:CDS |
CAGGAAACAGTCAGAATCCC+CGG | 0.559629 | 1.1:-837458 | MS.gene27050:CDS |
GGTTGAACAATGATCCTGGT+TGG | 0.559878 | 1.1:-844500 | MS.gene27050:CDS |
CTGATCAGCATTGGACTCCA+CGG | 0.560137 | 1.1:-837350 | MS.gene27050:CDS |
GGGAGGAGATACAACGAAAG+TGG | 0.560155 | 1.1:-838005 | MS.gene27050:CDS |
TTGCGATTATGACCGGGTGG+AGG | 0.560637 | 1.1:+837240 | None:intergenic |
ATGTTAATGGCGGAAATGCA+AGG | 0.561329 | 1.1:-837488 | MS.gene27050:CDS |
AGATATATACCAAACCATAC+AGG | 0.562216 | 1.1:+844264 | None:intergenic |
ACCTTTATGTTACTCCAACC+AGG | 0.564158 | 1.1:+844486 | None:intergenic |
ATGGGTGGCTATTTGACAAA+CGG | 0.564246 | 1.1:-843195 | MS.gene27050:CDS |
CTTCAAGATTTCTTTGAAGG+CGG | 0.564485 | 1.1:+844312 | None:intergenic |
GTTGCAGTTTCTAAATTCCA+CGG | 0.566898 | 1.1:-842295 | MS.gene27050:CDS |
GCAATAGGGGACCTGAAGAT+GGG | 0.566930 | 1.1:+838571 | None:intergenic |
CAGAAGTCACAAGCAAGAAG+AGG | 0.567192 | 1.1:-842355 | MS.gene27050:CDS |
GGAGGAGCTGATAAAGGCGG+TGG | 0.568146 | 1.1:+837669 | None:intergenic |
AGAGACTCGGGTTGAACTTG+AGG | 0.568442 | 1.1:+842319 | None:intergenic |
CACCAGGATCCGTTTCTGGT+CGG | 0.568580 | 1.1:-837887 | MS.gene27050:CDS |
ATACACTGAGGGTCTATGTT+GGG | 0.571340 | 1.1:-840704 | MS.gene27050:CDS |
CCGCATCGACAATAACCATC+GGG | 0.571691 | 1.1:+846414 | None:intergenic |
GGAAATGCAAGGCATTCCTC+AGG | 0.572008 | 1.1:-837477 | MS.gene27050:CDS |
GCCCTTCAGATCAGACGCAA+AGG | 0.572072 | 1.1:+839763 | None:intergenic |
GGCTGCGAACTGTGAAGGAA+AGG | 0.572145 | 1.1:-843841 | MS.gene27050:CDS |
GAATGATACCATTCATGTCA+AGG | 0.576525 | 1.1:+846300 | None:intergenic |
GCTGTGCACCAACCTTTCAA+CGG | 0.578097 | 1.1:+838894 | None:intergenic |
ACTTGAAAATAAAGCTGAAG+GGG | 0.578440 | 1.1:-841882 | MS.gene27050:CDS |
GCGAGCCACCTGTAGAAGGC+CGG | 0.580110 | 1.1:+846446 | None:intergenic |
ATAGATATAAACCTTGCAGC+GGG | 0.580760 | 1.1:+839668 | None:intergenic |
CATATTCCCTGTACCCACTA+GGG | 0.581062 | 1.1:+837322 | None:intergenic |
TAAAACCTGAACCTGTTCCA+TGG | 0.582052 | 1.1:-838040 | MS.gene27050:CDS |
CATATGGCTGCGAACTGTGA+AGG | 0.582332 | 1.1:-843846 | MS.gene27050:CDS |
CTAGTGTAGGCATATGTGGT+AGG | 0.582711 | 1.1:+843532 | None:intergenic |
ACTTCCTCCTAAAGAGGAGT+CGG | 0.582720 | 1.1:-844607 | MS.gene27050:CDS |
TATTGTCGATGCGGTCGAAG+AGG | 0.584594 | 1.1:-846405 | MS.gene27050:CDS |
AGAAACTGCAACTAGAGACT+CGG | 0.585347 | 1.1:+842306 | None:intergenic |
GAAACTGCAACTAGAGACTC+GGG | 0.589294 | 1.1:+842307 | None:intergenic |
GATAACTTAGAAACTTTACT+GGG | 0.589316 | 1.1:+842181 | None:intergenic |
ACGAGAGGAATTTGAGAGGG+AGG | 0.592042 | 1.1:-844637 | MS.gene27050:CDS |
TCAGTCATAAGTTTCCGATA+CGG | 0.592368 | 1.1:+839549 | None:intergenic |
CTTCAGATCAGACGCAAAGG+GGG | 0.592411 | 1.1:+839766 | None:intergenic |
GTTACGAGAGGAATTTGAGA+GGG | 0.595252 | 1.1:-844640 | MS.gene27050:CDS |
GGGTAACCCTAGTGGGTACA+GGG | 0.596327 | 1.1:-837328 | MS.gene27050:CDS |
TATAACTATGAATCACGCCC+AGG | 0.597396 | 1.1:-837705 | MS.gene27050:CDS |
GACTTGAAAATAAAGCTGAA+GGG | 0.597700 | 1.1:-841883 | MS.gene27050:CDS |
TTTGGAAACTTAACTCCATG+TGG | 0.597898 | 1.1:+838288 | None:intergenic |
AGGAAGCACTTGTCTTGACC+AGG | 0.598246 | 1.1:+843885 | None:intergenic |
ATAGGGGACCTGAAGATGGG+AGG | 0.598644 | 1.1:+838574 | None:intergenic |
TGCAAATGTTCCCGGTGAAG+GGG | 0.598957 | 1.1:-844357 | MS.gene27050:CDS |
TAGGGGACCTGAAGATGGGA+GGG | 0.601046 | 1.1:+838575 | None:intergenic |
TTTAGGGATACATGCAGTGG+TGG | 0.601340 | 1.1:-838637 | MS.gene27050:intron |
TCTACAGACTGTGACAATTG+GGG | 0.602618 | 1.1:-838066 | MS.gene27050:intron |
CACTCGAATTCCTTTCCAAG+AGG | 0.606254 | 1.1:-837555 | MS.gene27050:CDS |
TTGTGTGTCAGACTTTGAAG+TGG | 0.606742 | 1.1:-839406 | MS.gene27050:intron |
TTATAACCATAATGTGCAGT+AGG | 0.609849 | 1.1:+837621 | None:intergenic |
TGTGGCGACCAGCGTCGTGA+TGG | 0.610201 | 1.1:+837397 | None:intergenic |
TTTCCGATACGGCTCAGGCA+GGG | 0.611253 | 1.1:+839560 | None:intergenic |
GTACTAATGCATGCAGAGAG+AGG | 0.612253 | 1.1:+838982 | None:intergenic |
TATCAGAATGATGTGATCTG+GGG | 0.613280 | 1.1:+837523 | None:intergenic |
CAACTCAAAAGGTGGTCATG+AGG | 0.614389 | 1.1:-841833 | MS.gene27050:CDS |
CGACCAGAAACGGATCCTGG+TGG | 0.615070 | 1.1:+837888 | None:intergenic |
CATATAGCTCGACCACCACA+TGG | 0.615763 | 1.1:-838303 | MS.gene27050:CDS |
GGTTACATATCCTTATGTAG+TGG | 0.616997 | 1.1:-838607 | MS.gene27050:CDS |
ATTTATTTGCGATTATGACC+GGG | 0.617305 | 1.1:+837234 | None:intergenic |
ATAAAAGTCAATAATTGGCG+AGG | 0.617724 | 1.1:+839521 | None:intergenic |
AGGAAGCCAATGCCTCCACC+CGG | 0.620961 | 1.1:-837252 | MS.gene27050:CDS |
GGAGATACAACGAAAGTGGA+AGG | 0.621816 | 1.1:-838001 | MS.gene27050:intron |
ACCGCATCGACAATAACCAT+CGG | 0.624375 | 1.1:+846413 | None:intergenic |
GGTTACGAGAGGAATTTGAG+AGG | 0.625714 | 1.1:-844641 | MS.gene27050:CDS |
TAGGTCTTGAAATACACTGA+GGG | 0.626137 | 1.1:-840715 | MS.gene27050:CDS |
GAGGAACCGGTAGTTATCGA+AGG | 0.626963 | 1.1:-846386 | MS.gene27050:CDS |
GAATTCGAGTGATGTTGATG+AGG | 0.627584 | 1.1:+837567 | None:intergenic |
AAAAGGTGGTCATGAGGACA+AGG | 0.628899 | 1.1:-841827 | MS.gene27050:intron |
GTTGCCGACTCCTCTTTAGG+AGG | 0.629711 | 1.1:+844603 | None:intergenic |
GAGTTCCGGCCTTCTACAGG+TGG | 0.631407 | 1.1:-846451 | MS.gene27050:CDS |
CCCGATGGTTATTGTCGATG+CGG | 0.633136 | 1.1:-846414 | MS.gene27050:CDS |
GATGCCTTATAATGGACCAA+GGG | 0.633398 | 1.1:-837775 | MS.gene27050:CDS |
GACCAGAAACGGATCCTGGT+GGG | 0.635164 | 1.1:+837889 | None:intergenic |
TGCTAAAGATGCATCTGATG+CGG | 0.635804 | 1.1:-845233 | MS.gene27050:intron |
AAGGAACTTAAGGGAATGGG+TGG | 0.637310 | 1.1:-843210 | MS.gene27050:CDS |
TTATTTAGGGATACATGCAG+TGG | 0.637311 | 1.1:-838640 | MS.gene27050:intron |
TATTAGATAGAGGAGCAAGT+AGG | 0.638249 | 1.1:-837272 | MS.gene27050:CDS |
CGATGCCTTATAATGGACCA+AGG | 0.641113 | 1.1:-837776 | MS.gene27050:CDS |
GCAATAAAGAAGTCTTTGAG+AGG | 0.641433 | 1.1:-842204 | MS.gene27050:CDS |
CAATTCCTTACAGGTCAGGA+CGG | 0.642403 | 1.1:-837832 | MS.gene27050:CDS |
CCTTCAGATCAGACGCAAAG+GGG | 0.642471 | 1.1:+839765 | None:intergenic |
AATACACTGAGGGTCTATGT+TGG | 0.643746 | 1.1:-840705 | MS.gene27050:CDS |
AATAGCCACTATGTTAATGG+CGG | 0.643910 | 1.1:-837498 | MS.gene27050:CDS |
TGTGATTCATAGTTATTGCG+AGG | 0.644234 | 1.1:+837735 | None:intergenic |
ACCTCACGAATCTCTAGTGT+AGG | 0.645633 | 1.1:+843519 | None:intergenic |
CTCCACGGGGTAACCCTAGT+GGG | 0.648427 | 1.1:-837335 | MS.gene27050:CDS |
ATGGTTGGAAGTGTTGGTTG+TGG | 0.653016 | 1.1:+837379 | None:intergenic |
TGAAGAATCAAGGTTACGAG+AGG | 0.653348 | 1.1:-844652 | MS.gene27050:CDS |
GGGCTAAAATGAACCAGCAG+CGG | 0.653379 | 1.1:-845273 | MS.gene27050:CDS |
GGGATTCTGACTGTTTCCTG+AGG | 0.656427 | 1.1:+837461 | None:intergenic |
TTTATATCTACAGCGAACGG+TGG | 0.656934 | 1.1:-842392 | MS.gene27050:intron |
GGGTGCGATTAACTTGCTGA+TGG | 0.660509 | 1.1:-843244 | MS.gene27050:CDS |
CAAGTTCACCATCACGACGC+TGG | 0.661005 | 1.1:-837405 | MS.gene27050:CDS |
GTGATTCATAGTTATAGCCA+GGG | 0.661581 | 1.1:+837712 | None:intergenic |
AATAACTATGAATCACACCC+TGG | 0.662800 | 1.1:-837729 | MS.gene27050:CDS |
GGAAACTTAACTCCATGTGG+TGG | 0.663481 | 1.1:+838291 | None:intergenic |
ACTCCACGGGGTAACCCTAG+TGG | 0.664024 | 1.1:-837336 | MS.gene27050:CDS |
GCTGATGGCAGTATACAAGA+AGG | 0.664640 | 1.1:-843229 | MS.gene27050:CDS |
GCATAAGGTACATACTGTGG+AGG | 0.665026 | 1.1:+837651 | None:intergenic |
GCAGCATAAGGTACATACTG+TGG | 0.666378 | 1.1:+837648 | None:intergenic |
CTGAAGCAAGACGAGAACCG+TGG | 0.670349 | 1.1:+842278 | None:intergenic |
GATAGATATAAACCTTGCAG+CGG | 0.671473 | 1.1:+839667 | None:intergenic |
GATGTGTTCAACTCAAAAGG+TGG | 0.676030 | 1.1:-841841 | MS.gene27050:CDS |
TCGTGATGGTGAACTTGACG+GGG | 0.688386 | 1.1:+837411 | None:intergenic |
GCTCGCCGAGAAATACCCGA+TGG | 0.693787 | 1.1:-846429 | MS.gene27050:CDS |
CATGGCATGAAGATAATGGG+AGG | 0.696112 | 1.1:-838022 | MS.gene27050:CDS |
ATGCCTTATAATGGACCAAG+GGG | 0.704927 | 1.1:-837774 | MS.gene27050:CDS |
CCTTGAGTATTTGAAAACCG+GGG | 0.705287 | 1.1:+837441 | None:intergenic |
TATGACCCATTTGACCACAC+AGG | 0.709086 | 1.1:+843865 | None:intergenic |
TGTGGAGGAGCTGATAAAGG+CGG | 0.710414 | 1.1:+837666 | None:intergenic |
AGTTAATATTAAGCTCACCA+AGG | 0.711240 | 1.1:+839741 | None:intergenic |
TGAGGACTAGGTATTACAGG+TGG | 0.714069 | 1.1:+837585 | None:intergenic |
GCCTACACTAGAGATTCGTG+AGG | 0.723072 | 1.1:-843520 | MS.gene27050:intron |
TGAACCAGCAGCGGTCAAGG+CGG | 0.729515 | 1.1:-845264 | MS.gene27050:CDS |
TTAGGTCTTGAAATACACTG+AGG | 0.734741 | 1.1:-840716 | MS.gene27050:intron |
CAAGACAAGTGCTTCCTGTG+TGG | 0.737486 | 1.1:-843879 | MS.gene27050:CDS |
TACCCACTAGGGTTACCCCG+TGG | 0.748816 | 1.1:+837333 | None:intergenic |
GATCAGCATTGGACTCCACG+GGG | 0.753609 | 1.1:-837348 | MS.gene27050:CDS |
TATTTGCGATTATGACCGGG+TGG | 0.755620 | 1.1:+837237 | None:intergenic |
TGTGCACCAACCTTTCAACG+GGG | 0.823808 | 1.1:+838896 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 837236 | 846477 | 837236 | ID=MS.gene27050 |
chr1.1 | mRNA | 837236 | 846477 | 837236 | ID=MS.gene27050.t1;Parent=MS.gene27050 |
chr1.1 | exon | 846309 | 846477 | 846309 | ID=MS.gene27050.t1.exon1;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 846309 | 846477 | 846309 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 845234 | 845310 | 845234 | ID=MS.gene27050.t1.exon2;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 845234 | 845310 | 845234 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 844488 | 844679 | 844488 | ID=MS.gene27050.t1.exon3;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 844488 | 844679 | 844488 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 844274 | 844393 | 844274 | ID=MS.gene27050.t1.exon4;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 844274 | 844393 | 844274 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 844074 | 844136 | 844074 | ID=MS.gene27050.t1.exon5;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 844074 | 844136 | 844074 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 843776 | 843919 | 843776 | ID=MS.gene27050.t1.exon6;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 843776 | 843919 | 843776 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 843521 | 843685 | 843521 | ID=MS.gene27050.t1.exon7;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 843521 | 843685 | 843521 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 843188 | 843265 | 843188 | ID=MS.gene27050.t1.exon8;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 843188 | 843265 | 843188 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 842991 | 843077 | 842991 | ID=MS.gene27050.t1.exon9;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 842991 | 843077 | 842991 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 842123 | 842401 | 842123 | ID=MS.gene27050.t1.exon10;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 842123 | 842401 | 842123 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 841828 | 841923 | 841828 | ID=MS.gene27050.t1.exon11;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 841828 | 841923 | 841828 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 840818 | 840913 | 840818 | ID=MS.gene27050.t1.exon12;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 840818 | 840913 | 840818 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 840664 | 840734 | 840664 | ID=MS.gene27050.t1.exon13;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 840664 | 840734 | 840664 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 839680 | 839808 | 839680 | ID=MS.gene27050.t1.exon14;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 839680 | 839808 | 839680 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 839514 | 839590 | 839514 | ID=MS.gene27050.t1.exon15;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 839514 | 839590 | 839514 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 839377 | 839417 | 839377 | ID=MS.gene27050.t1.exon16;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 839377 | 839417 | 839377 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 839216 | 839290 | 839216 | ID=MS.gene27050.t1.exon17;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 839216 | 839290 | 839216 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 838907 | 839064 | 838907 | ID=MS.gene27050.t1.exon18;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 838907 | 839064 | 838907 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 838538 | 838654 | 838538 | ID=MS.gene27050.t1.exon19;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 838538 | 838654 | 838538 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 838284 | 838359 | 838284 | ID=MS.gene27050.t1.exon20;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 838284 | 838359 | 838284 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 838002 | 838081 | 838002 | ID=MS.gene27050.t1.exon21;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 838002 | 838081 | 838002 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
chr1.1 | exon | 837236 | 837917 | 837236 | ID=MS.gene27050.t1.exon22;Parent=MS.gene27050.t1 |
chr1.1 | CDS | 837236 | 837917 | 837236 | ID=cds.MS.gene27050.t1;Parent=MS.gene27050.t1 |
Gene Sequence |
Protein sequence |