AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043083

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043083.t1 MTR_4g032300 96.176 340 12 1 1 339 1 340 0.0 675
MS.gene043083.t1 MTR_4g032350 81.953 338 58 1 1 335 1 338 0.0 557
MS.gene043083.t1 MTR_4g032220 72.414 348 85 2 1 339 2 347 2.91e-171 479
MS.gene043083.t1 MTR_4g032240 66.286 350 104 4 1 339 2 348 4.93e-159 449
MS.gene043083.t1 MTR_4g032330 95.522 67 3 0 273 339 17 83 5.55e-37 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043083.t1 AT1G33970 60.366 328 127 2 1 328 6 330 3.10e-125 363
MS.gene043083.t1 AT1G33970 60.366 328 127 2 1 328 6 330 3.10e-125 363
MS.gene043083.t1 AT1G33970 60.366 328 127 2 1 328 6 330 3.10e-125 363
MS.gene043083.t1 AT1G33970 60.366 328 127 2 1 328 6 330 3.10e-125 363
MS.gene043083.t1 AT1G33970 60.806 273 104 2 1 273 6 275 6.66e-104 306
MS.gene043083.t1 AT1G33950 50.365 274 135 1 17 290 12 284 5.07e-91 275
MS.gene043083.t1 AT1G33900 47.122 278 146 1 11 288 9 285 1.94e-88 268
MS.gene043083.t1 AT1G33930 46.831 284 150 1 5 288 19 301 4.04e-84 258
MS.gene043083.t1 AT1G33950 48.540 274 134 2 17 290 12 278 4.79e-84 256
MS.gene043083.t1 AT1G33960 51.504 266 128 1 15 280 36 300 9.72e-84 258
MS.gene043083.t1 AT1G33960 51.504 266 128 1 15 280 60 324 1.93e-83 258
MS.gene043083.t1 AT4G09940 46.129 310 159 7 3 309 31 335 3.19e-83 258
MS.gene043083.t1 AT4G09950 45.706 326 165 8 4 326 5 321 6.06e-83 255
MS.gene043083.t1 AT4G09940 46.129 310 159 7 3 309 74 378 3.20e-82 256
MS.gene043083.t1 AT1G33890 47.253 273 143 1 13 285 5 276 8.77e-81 249
MS.gene043083.t1 AT1G33890 47.253 273 143 1 13 285 5 276 8.77e-81 249
MS.gene043083.t1 AT2G26820 42.540 315 168 3 16 319 2 314 1.19e-76 239
MS.gene043083.t1 AT2G26820 42.540 315 168 3 16 319 2 314 1.95e-76 240
MS.gene043083.t1 AT1G33910 48.188 276 131 5 15 288 9 274 4.38e-76 236
MS.gene043083.t1 AT2G26820 42.581 310 167 2 21 319 5 314 4.78e-75 239
MS.gene043083.t1 AT2G26820 43.878 294 154 2 21 303 5 298 5.85e-74 236
MS.gene043083.t1 AT4G09930 42.188 320 172 7 22 339 27 335 2.12e-70 223
MS.gene043083.t1 AT1G33870 43.590 234 130 1 46 279 1 232 2.15e-65 207
MS.gene043083.t1 AT1G33830 47.343 207 109 0 21 227 8 214 2.02e-64 204
MS.gene043083.t1 AT1G33880 42.029 207 114 2 21 227 23 223 1.99e-55 181
MS.gene043083.t1 AT1G33880 42.029 207 114 2 21 227 23 223 1.99e-55 181
MS.gene043083.t1 AT4G09950 43.137 255 140 5 74 326 7 258 2.08e-54 179

Find 62 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAAATAAAATACCTTTAA+AGG 0.147645 4.2:+72910560 None:intergenic
CGTAGTGTGCAGAAATTATT+TGG 0.186995 4.2:-72910686 MS.gene043083:CDS
CACATGATTGTGGTCTTTAC+CGG 0.249622 4.2:-72910647 MS.gene043083:CDS
TCTGTTGGAATTGAACTTCT+TGG 0.274494 4.2:-72910815 MS.gene043083:CDS
TTGAATAACTCATCTCTATA+AGG 0.283431 4.2:+72909996 None:intergenic
GAGACTCTGGACGATTATTT+AGG 0.309111 4.2:-72910599 MS.gene043083:CDS
TGACTGTCCAGAGCCTTTAA+AGG 0.319479 4.2:-72910573 MS.gene043083:intron
GCAACTGGTAATAGTATTCT+TGG 0.337733 4.2:-72911176 MS.gene043083:CDS
AATAGTCAAGTGCATTGATT+TGG 0.357598 4.2:-72910786 MS.gene043083:CDS
TGATGTTAAGACATTGGTTT+TGG 0.359869 4.2:-72911225 MS.gene043083:CDS
AGTTGCACTCTTGCCATTGC+CGG 0.395880 4.2:+72911193 None:intergenic
TAAAATACCTTTAAAGGCTC+TGG 0.399861 4.2:+72910566 None:intergenic
AACTCGAGGGCTAGCTCTTC+CGG 0.409222 4.2:-72911140 MS.gene043083:CDS
ATATTCAAAAGAATATATAT+TGG 0.422703 4.2:-72909824 MS.gene043083:CDS
GACAGCATGGATTCCATCCT+TGG 0.423615 4.2:+72910763 None:intergenic
ACCAATGTCTTAACATCATT+AGG 0.430269 4.2:+72911230 None:intergenic
TGAGTTATTCAAAGAACTAA+AGG 0.437815 4.2:-72909985 MS.gene043083:intron
CTCAGTGAATCGTGTTCTTA+CGG 0.439237 4.2:+72910727 None:intergenic
GGCAATGGCAAGAGTGCAAC+TGG 0.443732 4.2:-72911191 MS.gene043083:CDS
TACAAGGCTGGAGCTACAAT+TGG 0.444256 4.2:-72909486 MS.gene043083:CDS
ACATGATTGTGGTCTTTACC+GGG 0.452744 4.2:-72910646 MS.gene043083:CDS
GTAGGTTGAGTCAAAGTTGA+GGG 0.472777 4.2:-72909516 MS.gene043083:intron
TGCATTGATTTGGCCAAGGA+TGG 0.480665 4.2:-72910776 MS.gene043083:CDS
TTCGCTGCAGAAAGGACAAA+TGG 0.490581 4.2:-72909887 MS.gene043083:intron
TTGGTTGGACGTACCGGCAA+TGG 0.492283 4.2:-72911206 MS.gene043083:CDS
ACCTAATGATGTTAAGACAT+TGG 0.498947 4.2:-72911231 MS.gene043083:CDS
TTCTTCCAATTCATCTCCCC+CGG 0.516121 4.2:+72910628 None:intergenic
GAGGGAAGCAACTACAAGGC+TGG 0.525548 4.2:-72909498 MS.gene043083:CDS
GGAAGAAAATGAGGAGACTC+TGG 0.532230 4.2:-72910612 MS.gene043083:CDS
GCTACTAGTATATCAGAGAA+TGG 0.540658 4.2:+72909319 None:intergenic
AGATGAATTGGAAGAAAATG+AGG 0.546063 4.2:-72910621 MS.gene043083:CDS
AGAGAGGCTGATTCCATGAA+AGG 0.551453 4.2:-72909847 MS.gene043083:CDS
TGTCAGTAATTCGAGTCAGC+TGG 0.561062 4.2:+72909767 None:intergenic
TTCACACGAGGTGGTGACAC+CGG 0.575045 4.2:+72911121 None:intergenic
GAGAATGGCACAACTAGTCT+CGG 0.577852 4.2:+72909334 None:intergenic
CAAGTGCATTGATTTGGCCA+AGG 0.581776 4.2:-72910780 MS.gene043083:CDS
AGTTGAGGGAAGCAACTACA+AGG 0.583604 4.2:-72909502 MS.gene043083:CDS
TAGTCTCGGCATCTCGCTTG+CGG 0.584670 4.2:+72909348 None:intergenic
TGTAGGTTGAGTCAAAGTTG+AGG 0.603125 4.2:-72909517 MS.gene043083:intron
GTTAATGTTATCGATAGCCC+AGG 0.610949 4.2:-72911065 MS.gene043083:intron
ACTTGTCTGCATTTCACACG+AGG 0.612967 4.2:+72911109 None:intergenic
AATTGTTGACCACATGATTG+TGG 0.613289 4.2:-72910657 MS.gene043083:CDS
CAGGCAATTCTGTCTTTGTG+TGG 0.615966 4.2:-72910131 MS.gene043083:CDS
AGAACACCACAAGGACAGCA+TGG 0.616006 4.2:+72910750 None:intergenic
ACTAAGAAGACATCTTGAGC+AGG 0.618632 4.2:-72909384 MS.gene043083:CDS
TGGAATCCATGCTGTCCTTG+TGG 0.619644 4.2:-72910756 MS.gene043083:CDS
ATGATTGTGGTCTTTACCGG+GGG 0.624456 4.2:-72910644 MS.gene043083:CDS
AGGCAATTCTGTCTTTGTGT+GGG 0.625043 4.2:-72910130 MS.gene043083:CDS
TGAATTTAAGTAGTGATGGG+TGG 0.628581 4.2:-72911296 None:intergenic
AACATGGTAGTATCACAGAA+TGG 0.631874 4.2:-72910026 MS.gene043083:CDS
AGAGCAAGCTGCAAGACTAG+AGG 0.632155 4.2:-72909459 MS.gene043083:CDS
TGTCTTAACATCATTAGGTG+AGG 0.649897 4.2:+72911235 None:intergenic
CATGATTGTGGTCTTTACCG+GGG 0.664288 4.2:-72910645 MS.gene043083:CDS
TTCTTACGGAGAACACCACA+AGG 0.679464 4.2:+72910741 None:intergenic
TTAAAGGCTCTGGACAGTCA+CGG 0.680275 4.2:+72910576 None:intergenic
TGTCTGCATTTCACACGAGG+TGG 0.683107 4.2:+72911112 None:intergenic
CGGTAAAGACCACAATCATG+TGG 0.683165 4.2:+72910648 None:intergenic
AAGAACACGATTCACTGAGG+AGG 0.684223 4.2:-72910723 MS.gene043083:CDS
ATGGTAGTATCACAGAATGG+TGG 0.686278 4.2:-72910023 MS.gene043083:CDS
CAGACAAGTGAGATGAACGA+TGG 0.694102 4.2:-72911095 MS.gene043083:CDS
GCTGACTCGAATTACTGACA+TGG 0.703069 4.2:-72909764 MS.gene043083:intron
CGTAAGAACACGATTCACTG+AGG 0.738794 4.2:-72910726 MS.gene043083:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAATAAAATACCTTTAA+AGG + chr4.2:72910055-72910074 None:intergenic 10.0%
!! ATATTCAAAAGAATATATAT+TGG - chr4.2:72910788-72910807 MS.gene043083:CDS 10.0%
!!! ATTTTATATGATCAATTATA+TGG - chr4.2:72911069-72911088 MS.gene043083:CDS 10.0%
!!! TTTTAAAATCCATAATTAAA+AGG - chr4.2:72910196-72910215 MS.gene043083:intron 10.0%
!!! AAACTTTAAAAATTTCACTT+TGG - chr4.2:72910300-72910319 MS.gene043083:intron 15.0%
!!! AAATTTTGTACAAAAAACAA+TGG + chr4.2:72910998-72911017 None:intergenic 15.0%
!!! CTTTTCTTTTTATTGTTTAT+TGG - chr4.2:72910104-72910123 MS.gene043083:CDS 15.0%
!!! TTATATTGTCCTTTTAATTA+TGG + chr4.2:72910208-72910227 None:intergenic 15.0%
!!! TTGTTTTTTGTACAAAATTT+TGG - chr4.2:72910998-72911017 MS.gene043083:intron 15.0%
!!! TTTATTGGATTTTAAACATT+TGG - chr4.2:72910119-72910138 MS.gene043083:CDS 15.0%
!! ATCTTAACATAAGTAGTATT+TGG - chr4.2:72909577-72909596 MS.gene043083:intron 20.0%
!! TATAAGCTTTCTTAATCATT+TGG - chr4.2:72910275-72910294 MS.gene043083:intron 20.0%
!!! AAAAACATTTTTCTGGTTAA+AGG + chr4.2:72909759-72909778 None:intergenic 20.0%
! ATAAAATTCGGTTGCTAAAT+AGG + chr4.2:72909681-72909700 None:intergenic 25.0%
! ATGTTAAGATGTATTTACCT+GGG + chr4.2:72909567-72909586 None:intergenic 25.0%
! TATGTTAAGATGTATTTACC+TGG + chr4.2:72909568-72909587 None:intergenic 25.0%
! TGAGTTATTCAAAGAACTAA+AGG - chr4.2:72910627-72910646 MS.gene043083:CDS 25.0%
! TTGAATAACTCATCTCTATA+AGG + chr4.2:72910619-72910638 None:intergenic 25.0%
!! ATCCTGTAAAAACATTTTTC+TGG + chr4.2:72909766-72909785 None:intergenic 25.0%
!! GTTTCTATGGATTTATGTTT+TGG - chr4.2:72910156-72910175 MS.gene043083:intron 25.0%
!! TTCTTTTGAATATCCTTTCA+TGG + chr4.2:72910781-72910800 None:intergenic 25.0%
!!! AACCAGAAAAATGTTTTTAC+AGG - chr4.2:72909761-72909780 MS.gene043083:intron 25.0%
!!! AGTTTTTTCTGTTGATGATT+GGG - chr4.2:72909345-72909364 MS.gene043083:CDS 25.0%
!!! GATCAATTATATGGTTTTGT+AGG - chr4.2:72911078-72911097 MS.gene043083:CDS 25.0%
!!! GGATTATTTGATTTTTCTGT+TGG - chr4.2:72909782-72909801 MS.gene043083:CDS 25.0%
!!! TTGTACAAAATTTTGGAAGT+AGG - chr4.2:72911005-72911024 MS.gene043083:intron 25.0%
AAAAAAAGTCTTCAACTCGA+GGG - chr4.2:72909459-72909478 MS.gene043083:CDS 30.0%
AAAACAATGGACACTTATGT+TGG + chr4.2:72910985-72911004 None:intergenic 30.0%
AAACAATGGACACTTATGTT+GGG + chr4.2:72910984-72911003 None:intergenic 30.0%
AATCATTATATGCACAGAAG+TGG - chr4.2:72910929-72910948 MS.gene043083:intron 30.0%
ACCAATGTCTTAACATCATT+AGG + chr4.2:72909385-72909404 None:intergenic 30.0%
ACCTAATGATGTTAAGACAT+TGG - chr4.2:72909381-72909400 MS.gene043083:CDS 30.0%
AGATGAATTGGAAGAAAATG+AGG - chr4.2:72909991-72910010 MS.gene043083:CDS 30.0%
ATCATTATATGCACAGAAGT+GGG - chr4.2:72910930-72910949 MS.gene043083:intron 30.0%
ATTGGAGCTTAAAAAGCAAA+GGG - chr4.2:72910806-72910825 MS.gene043083:CDS 30.0%
TAGACACCCATCATAAAATT+CGG + chr4.2:72909693-72909712 None:intergenic 30.0%
TAGTACTTTCTCCAAAACTT+GGG + chr4.2:72910356-72910375 None:intergenic 30.0%
TATTGGAGCTTAAAAAGCAA+AGG - chr4.2:72910805-72910824 MS.gene043083:CDS 30.0%
TTAGTACTTTCTCCAAAACT+TGG + chr4.2:72910357-72910376 None:intergenic 30.0%
TTGCCTGCATTATTAACAAA+AGG + chr4.2:72910468-72910487 None:intergenic 30.0%
! ACTTCTCTCTTTTGTAAACA+TGG - chr4.2:72910570-72910589 MS.gene043083:intron 30.0%
! AGTCCTTTTGTTAATAATGC+AGG - chr4.2:72910462-72910481 MS.gene043083:intron 30.0%
! GCTTTTCGATAACAAAACTA+AGG - chr4.2:72910516-72910535 MS.gene043083:intron 30.0%
! TAAAATACCTTTAAAGGCTC+TGG + chr4.2:72910049-72910068 None:intergenic 30.0%
! TAGCAACCGAATTTTATGAT+GGG - chr4.2:72909684-72909703 MS.gene043083:intron 30.0%
! TTAGCAACCGAATTTTATGA+TGG - chr4.2:72909683-72909702 MS.gene043083:intron 30.0%
! TTTTGTATGATACACTTCCT+AGG - chr4.2:72910419-72910438 MS.gene043083:intron 30.0%
!! AATAGTCAAGTGCATTGATT+TGG - chr4.2:72909826-72909845 MS.gene043083:CDS 30.0%
!! TTTATGATGGGTGTCTAAAT+TGG - chr4.2:72909696-72909715 MS.gene043083:intron 30.0%
!!! CAGTTTTTTCTGTTGATGAT+TGG - chr4.2:72909344-72909363 MS.gene043083:CDS 30.0%
!!! TGATGTTAAGACATTGGTTT+TGG - chr4.2:72909387-72909406 MS.gene043083:CDS 30.0%
AACATGGTAGTATCACAGAA+TGG - chr4.2:72910586-72910605 MS.gene043083:CDS 35.0%
AATTGTTGACCACATGATTG+TGG - chr4.2:72909955-72909974 MS.gene043083:intron 35.0%
CAAATGGAGTTCAAAAACCT+AGG + chr4.2:72910439-72910458 None:intergenic 35.0%
CGTAGTGTGCAGAAATTATT+TGG - chr4.2:72909926-72909945 MS.gene043083:intron 35.0%
CTTGCATCGAAAATTCAACA+AGG + chr4.2:72910247-72910266 None:intergenic 35.0%
GAAAAAAAGTCTTCAACTCG+AGG - chr4.2:72909458-72909477 MS.gene043083:CDS 35.0%
GCAACTGGTAATAGTATTCT+TGG - chr4.2:72909436-72909455 MS.gene043083:CDS 35.0%
TAACAAAAGGACTCAGCAAA+TGG + chr4.2:72910455-72910474 None:intergenic 35.0%
TCATTATATGCACAGAAGTG+GGG - chr4.2:72910931-72910950 MS.gene043083:intron 35.0%
TCTGTTGGAATTGAACTTCT+TGG - chr4.2:72909797-72909816 MS.gene043083:CDS 35.0%
TGTCTTAACATCATTAGGTG+AGG + chr4.2:72909380-72909399 None:intergenic 35.0%
TTGGTTGTCAAATGAGTTTG+TGG - chr4.2:72909715-72909734 MS.gene043083:intron 35.0%
! AAACGTGTTTTCCCAAGTTT+TGG - chr4.2:72910342-72910361 MS.gene043083:intron 35.0%
!!! GTTAAGACATTGGTTTTGGT+TGG - chr4.2:72909391-72909410 MS.gene043083:CDS 35.0%
ACATGATTGTGGTCTTTACC+GGG - chr4.2:72909966-72909985 MS.gene043083:intron 40.0%
ACTAAGAAGACATCTTGAGC+AGG - chr4.2:72911228-72911247 MS.gene043083:CDS 40.0%
AGGCAATTCTGTCTTTGTGT+GGG - chr4.2:72910482-72910501 MS.gene043083:intron 40.0%
ATGGTAGTATCACAGAATGG+TGG - chr4.2:72910589-72910608 MS.gene043083:CDS 40.0%
CACATGATTGTGGTCTTTAC+CGG - chr4.2:72909965-72909984 MS.gene043083:intron 40.0%
CAGCGAAACGATGAATTCAT+TGG + chr4.2:72910712-72910731 None:intergenic 40.0%
CTCAGTGAATCGTGTTCTTA+CGG + chr4.2:72909888-72909907 None:intergenic 40.0%
GAGACTCTGGACGATTATTT+AGG - chr4.2:72910013-72910032 MS.gene043083:CDS 40.0%
GCTGCAAAAACAACAAAGAG+AGG - chr4.2:72910749-72910768 MS.gene043083:CDS 40.0%
GTTAATGTTATCGATAGCCC+AGG - chr4.2:72909547-72909566 MS.gene043083:intron 40.0%
! GTAGGTTGAGTCAAAGTTGA+GGG - chr4.2:72911096-72911115 MS.gene043083:CDS 40.0%
! TGTAGGTTGAGTCAAAGTTG+AGG - chr4.2:72911095-72911114 MS.gene043083:CDS 40.0%
!! GCATTGTGAAGCTGTTTCTA+TGG - chr4.2:72910143-72910162 MS.gene043083:intron 40.0%
AAGAACACGATTCACTGAGG+AGG - chr4.2:72909889-72909908 MS.gene043083:intron 45.0%
ACTTGTCTGCATTTCACACG+AGG + chr4.2:72909506-72909525 None:intergenic 45.0%
AGTTGAGGGAAGCAACTACA+AGG - chr4.2:72911110-72911129 MS.gene043083:CDS 45.0%
ATGATTGTGGTCTTTACCGG+GGG - chr4.2:72909968-72909987 MS.gene043083:intron 45.0%
CAGACAAGTGAGATGAACGA+TGG - chr4.2:72909517-72909536 MS.gene043083:intron 45.0%
CAGGCAATTCTGTCTTTGTG+TGG - chr4.2:72910481-72910500 MS.gene043083:intron 45.0%
CATGATTGTGGTCTTTACCG+GGG - chr4.2:72909967-72909986 MS.gene043083:intron 45.0%
CGGTAAAGACCACAATCATG+TGG + chr4.2:72909967-72909986 None:intergenic 45.0%
CGTAAGAACACGATTCACTG+AGG - chr4.2:72909886-72909905 MS.gene043083:intron 45.0%
GCTAAATAGGTCGCTAGCTA+AGG + chr4.2:72909668-72909687 None:intergenic 45.0%
GGAAGAAAATGAGGAGACTC+TGG - chr4.2:72910000-72910019 MS.gene043083:CDS 45.0%
TACAAGGCTGGAGCTACAAT+TGG - chr4.2:72911126-72911145 MS.gene043083:CDS 45.0%
TGACTGTCCAGAGCCTTTAA+AGG - chr4.2:72910039-72910058 MS.gene043083:CDS 45.0%
TGTCAGTAATTCGAGTCAGC+TGG + chr4.2:72910848-72910867 None:intergenic 45.0%
TTCATCGTTTCGCTGCAGAA+AGG - chr4.2:72910717-72910736 MS.gene043083:CDS 45.0%
TTCGCTGCAGAAAGGACAAA+TGG - chr4.2:72910725-72910744 MS.gene043083:CDS 45.0%
TTCTTACGGAGAACACCACA+AGG + chr4.2:72909874-72909893 None:intergenic 45.0%
TTCTTCCAATTCATCTCCCC+CGG + chr4.2:72909987-72910006 None:intergenic 45.0%
! AGAGAGGCTGATTCCATGAA+AGG - chr4.2:72910765-72910784 MS.gene043083:CDS 45.0%
! GAGAATGGCACAACTAGTCT+CGG + chr4.2:72911281-72911300 None:intergenic 45.0%
!! CAAGTGCATTGATTTGGCCA+AGG - chr4.2:72909832-72909851 MS.gene043083:CDS 45.0%
!! GCTGACTCGAATTACTGACA+TGG - chr4.2:72910848-72910867 MS.gene043083:intron 45.0%
!! TGCATTGATTTGGCCAAGGA+TGG - chr4.2:72909836-72909855 MS.gene043083:CDS 45.0%
!! TTAAAGGCTCTGGACAGTCA+CGG + chr4.2:72910039-72910058 None:intergenic 45.0%
!!! TTGGTTTTGGTTGGACGTAC+CGG - chr4.2:72909400-72909419 MS.gene043083:CDS 45.0%
AGAACACCACAAGGACAGCA+TGG + chr4.2:72909865-72909884 None:intergenic 50.0%
AGAGCAAGCTGCAAGACTAG+AGG - chr4.2:72911153-72911172 MS.gene043083:CDS 50.0%
AGTTGCACTCTTGCCATTGC+CGG + chr4.2:72909422-72909441 None:intergenic 50.0%
ATGGACACTTATGTTGGGCG+AGG + chr4.2:72910979-72910998 None:intergenic 50.0%
CTTTACCGGGGGAGATGAAT+TGG - chr4.2:72909979-72909998 MS.gene043083:intron 50.0%
GACAGCATGGATTCCATCCT+TGG + chr4.2:72909852-72909871 None:intergenic 50.0%
TGGAATCCATGCTGTCCTTG+TGG - chr4.2:72909856-72909875 MS.gene043083:CDS 50.0%
TGGACACTTATGTTGGGCGA+GGG + chr4.2:72910978-72910997 None:intergenic 50.0%
TGTCTGCATTTCACACGAGG+TGG + chr4.2:72909503-72909522 None:intergenic 50.0%
ACACTTATGTTGGGCGAGGG+TGG + chr4.2:72910975-72910994 None:intergenic 55.0%
ACTTATGTTGGGCGAGGGTG+GGG + chr4.2:72910973-72910992 None:intergenic 55.0%
CACTTATGTTGGGCGAGGGT+GGG + chr4.2:72910974-72910993 None:intergenic 55.0%
GAGGGAAGCAACTACAAGGC+TGG - chr4.2:72911114-72911133 MS.gene043083:CDS 55.0%
GCACAGAAGTGGGGAGTTGT+GGG - chr4.2:72910940-72910959 MS.gene043083:intron 55.0%
TAGTCTCGGCATCTCGCTTG+CGG + chr4.2:72911267-72911286 None:intergenic 55.0%
TGCACAGAAGTGGGGAGTTG+TGG - chr4.2:72910939-72910958 MS.gene043083:intron 55.0%
TTCACACGAGGTGGTGACAC+CGG + chr4.2:72909494-72909513 None:intergenic 55.0%
! GGCAATGGCAAGAGTGCAAC+TGG - chr4.2:72909421-72909440 MS.gene043083:CDS 55.0%
! TTGGTTGGACGTACCGGCAA+TGG - chr4.2:72909406-72909425 MS.gene043083:CDS 55.0%
!! AACTCGAGGGCTAGCTCTTC+CGG - chr4.2:72909472-72909491 MS.gene043083:CDS 55.0%
CTTATGTTGGGCGAGGGTGG+GGG + chr4.2:72910972-72910991 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 72909331 72911303 72909331 ID=MS.gene043083
chr4.2 mRNA 72909331 72911303 72909331 ID=MS.gene043083.t1;Parent=MS.gene043083
chr4.2 exon 72911066 72911303 72911066 ID=MS.gene043083.t1.exon1;Parent=MS.gene043083.t1
chr4.2 CDS 72911066 72911303 72911066 ID=cds.MS.gene043083.t1;Parent=MS.gene043083.t1
chr4.2 exon 72910574 72910851 72910574 ID=MS.gene043083.t1.exon2;Parent=MS.gene043083.t1
chr4.2 CDS 72910574 72910851 72910574 ID=cds.MS.gene043083.t1;Parent=MS.gene043083.t1
chr4.2 exon 72909986 72910150 72909986 ID=MS.gene043083.t1.exon3;Parent=MS.gene043083.t1
chr4.2 CDS 72909986 72910150 72909986 ID=cds.MS.gene043083.t1;Parent=MS.gene043083.t1
chr4.2 exon 72909765 72909899 72909765 ID=MS.gene043083.t1.exon4;Parent=MS.gene043083.t1
chr4.2 CDS 72909765 72909899 72909765 ID=cds.MS.gene043083.t1;Parent=MS.gene043083.t1
chr4.2 exon 72909331 72909534 72909331 ID=MS.gene043083.t1.exon5;Parent=MS.gene043083.t1
chr4.2 CDS 72909331 72909534 72909331 ID=cds.MS.gene043083.t1;Parent=MS.gene043083.t1
Gene Sequence

>MS.gene043083

ATGGGTGGAAGTTCAGTTTTTTCTGTTGATGATTGGGAGTTTGCATCCTCACCTAATGATGTTAAGACATTGGTTTTGGTTGGACGTACCGGCAATGGCAAGAGTGCAACTGGTAATAGTATTCTTGGAAAAAAAGTCTTCAACTCGAGGGCTAGCTCTTCCGGTGTCACCACCTCGTGTGAAATGCAGACAAGTGAGATGAACGATGGACAGACTGTTAATGTTATCGATAGCCCAGGTAAATACATCTTAACATAAGTAGTATTTGGTGAAATAGCACTGCTAAAAATTTCATTATTTATCGATCAATTGAATAATCGAATCAATTCAGTCTCCTTAGCTAGCGACCTATTTAGCAACCGAATTTTATGATGGGTGTCTAAATTGGTTGTCAAATGAGTTTGTGGCAGAAACTTTGTTGTATACCTTTAACCAGAAAAATGTTTTTACAGGATTATTTGATTTTTCTGTTGGAATTGAACTTCTTGGCAAAGAAATAGTCAAGTGCATTGATTTGGCCAAGGATGGAATCCATGCTGTCCTTGTGGTGTTCTCCGTAAGAACACGATTCACTGAGGAGGAAGAAAATGCTCTGCGTAGTGTGCAGAAATTATTTGGAAGCAAAATTGTTGACCACATGATTGTGGTCTTTACCGGGGGAGATGAATTGGAAGAAAATGAGGAGACTCTGGACGATTATTTAGGCCGTGACTGTCCAGAGCCTTTAAAGGTATTTTATTTTATTATTAATTATAACAAAAATTTAGATACTGCTTTTCTTTTTATTGTTTATTGGATTTTAAACATTTGGTGCATTGTGAAGCTGTTTCTATGGATTTATGTTTTGGTAAAGTTTGACGATGACTTTTAAAATCCATAATTAAAAGGACAATATAAAACTTTCGCAATCATGCCTTGTTGAATTTTCGATGCAAGTCATTAGTTATAAGCTTTCTTAATCATTTGGATAAACTTTAAAAATTTCACTTTGGCGATATAGTTTTTTCTCGTAAACGTGTTTTCCCAAGTTTTGGAGAAAGTACTAAACTTTATTCGATCTGTGTTTTTATTTACTCATGCTAGTATAATTTTGTATGATACACTTCCTAGGTTTTTGAACTCCATTTGCTGAGTCCTTTTGTTAATAATGCAGGCAATTCTGTCTTTGTGTGGGAATCGATGTGTGCTTTTCGATAACAAAACTAAGGATGAAAAGAAGCAAACTGAACAAGTTCAACAACTTCTCTCTTTTGTAAACATGGTAGTATCACAGAATGGTGGACAGCCTTATAGAGATGAGTTATTCAAAGAACTAAAGGTTGAGATTTTACAAAATTTCACAATTGCATTTCTTAAATATTTAAAAAACATTATGACACCAATGAATTCATCGTTTCGCTGCAGAAAGGACAAATGGAGCTGCAAAAACAACAAAGAGAGGCTGATTCCATGAAAGGATATTCAAAAGAATATATATTGGAGCTTAAAAAGCAAAGGGAGCAAGAATATAATGACCAGCTGACTCGAATTACTGACATGGTACTTTTCGTGTCTATATTTTGTCGTATTCATGATTTCGTCTTTCTTGTTTTTTTAACAATCATTATATGCACAGAAGTGGGGAGTTGTGGGTTCGAACCCCCACCCTCGCCCAACATAAGTGTCCATTGTTTTTTGTACAAAATTTTGGAAGTAGGAAACAAAGTATGAGATTGTTTTCATGTGCGCATAATCGAAGATTTTATATGATCAATTATATGGTTTTGTAGGTTGAGTCAAAGTTGAGGGAAGCAACTACAAGGCTGGAGCTACAATTGGCAAAAGAGCAAGCTGCAAGACTAGAGGCAGAAAAGTATGCAAATGCTGCTCAAATGAAATCAAAGTATGAAATTGACAAACTAAGAAGACATCTTGAGCAGGCACACGAAGAACTCCGCAAGCGAGATGCCGAGACTAGTTGTGCCATTCTCTGA
Protein sequence

>MS.gene043083.t1

MGGSSVFSVDDWEFASSPNDVKTLVLVGRTGNGKSATGNSILGKKVFNSRASSSGVTTSCEMQTSEMNDGQTVNVIDSPGLFDFSVGIELLGKEIVKCIDLAKDGIHAVLVVFSVRTRFTEEEENALRSVQKLFGSKIVDHMIVVFTGGDELEENEETLDDYLGRDCPEPLKAILSLCGNRCVLFDNKTKDEKKQTEQVQQLLSFVNMVVSQNGGQPYRDELFKELKKGQMELQKQQREADSMKGYSKEYILELKKQREQEYNDQLTRITDMVESKLREATTRLELQLAKEQAARLEAEKYANAAQMKSKYEIDKLRRHLEQAHEELRKRDAETSCAIL