AlfalfaGEDB | MS.gene043084

M. sativa cultivar XinJiangDaYe / MS.gene043084

KEGG: -
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF04548.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043084.t1	AES87697.1	97.3	365	10	0	1	365	1	365	1.50E-175	625.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043084.t1	F4HT21	59.8	296	115	2	10	305	13	304	8.8e-92	338.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043084.t1	G7JN60	97.3	365	10	0	1	365	1	365	1.1e-175	625.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene009458	MS.gene043084	PPI
MS.gene51627	MS.gene043084	PPI
MS.gene56256	MS.gene043084	PPI
MS.gene63514	MS.gene043084	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043084.t1	MTR_4g032350	96.712	365	12	0	1	365	1	365	0.0	723
MS.gene043084.t1	MTR_4g032300	80.826	339	61	2	1	338	1	336	0.0	554
MS.gene043084.t1	MTR_4g032220	71.903	331	87	1	10	334	9	339	2.63e-163	461
MS.gene043084.t1	MTR_4g032240	65.465	333	107	2	10	334	9	341	5.81e-150	427
MS.gene043084.t1	MTR_4g032330	77.778	63	14	0	276	338	17	79	2.74e-21	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043084.t1	AT1G33970	58.696	322	129	2	10	331	13	330	5.58e-123	358
MS.gene043084.t1	AT1G33970	58.696	322	129	2	10	331	13	330	5.58e-123	358
MS.gene043084.t1	AT1G33970	58.696	322	129	2	10	331	13	330	5.58e-123	358
MS.gene043084.t1	AT1G33970	58.696	322	129	2	10	331	13	330	5.58e-123	358
MS.gene043084.t1	AT1G33970	58.801	267	106	2	10	276	13	275	4.98e-101	300
MS.gene043084.t1	AT1G33900	47.810	274	142	1	18	291	13	285	1.39e-88	270
MS.gene043084.t1	AT1G33950	48.718	273	139	1	21	293	13	284	3.12e-87	266
MS.gene043084.t1	AT4G09940	47.492	299	151	6	24	319	47	342	4.69e-85	263
MS.gene043084.t1	AT4G09940	47.492	299	151	6	24	319	90	385	3.49e-84	262
MS.gene043084.t1	AT1G33930	45.936	283	149	2	9	291	23	301	4.87e-82	253

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Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGAGAATACTACAATTA+AGG	0.334336	4.2:+72905140	None:intergenic
AACGTGGTAATATCACAGAA+TGG	0.694251	4.2:-72904506	MS.gene043084:CDS
AAGAGAGAAGTTGTTGAACT+TGG	0.473678	4.2:+72904534	None:intergenic
AAGCACAAGGAGAACTTCGC+AGG	0.539451	4.2:-72903516	MS.gene043084:CDS
AAGTCGAGGACTAGCTCTTC+CGG	0.512151	4.2:-72905484	MS.gene043084:CDS
AATAGTCAAGTGCATTGATT+TGG	0.350778	4.2:-72905181	MS.gene043084:CDS
ACATGATTATCGTCTTTACC+GGG	0.549360	4.2:-72905041	MS.gene043084:CDS
ACTCAGAAGAAATCTTGAGA+AGG	0.625364	4.2:-72903605	MS.gene043084:CDS
AGAAGCAAACTCCCAATTAT+CGG	0.404869	4.2:+72905609	None:intergenic
AGAATACTACAATTAAGGCG+TGG	0.694461	4.2:+72905145	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTCTTGTCTTAATCCTT+TGG	-	chr4.2:72905127-72905146	MS.gene043084:CDS	30.0%
ATATCAATGAATTCGTCGTT+TGG	-	chr4.2:72904732-72904751	MS.gene043084:intron	30.0%
CAAGTTAAAACATCTTTACC+TGG	+	chr4.2:72903729-72903748	None:intergenic	30.0%
GCTAAATAAGAACACATACA+AGG	+	chr4.2:72904262-72904281	None:intergenic	30.0%
GGAAGAAAATAATGAAACAC+TGG	-	chr4.2:72904110-72904129	MS.gene043084:intron	30.0%
TAAATAGGGGAAATTGTAAC+GGG	-	chr4.2:72905044-72905063	MS.gene043084:CDS	30.0%
TACATGATTATCGTCTTTAC+CGG	-	chr4.2:72904075-72904094	MS.gene043084:intron	30.0%
TAGTTGAAACCATTATTGGT+CGG	+	chr4.2:72905208-72905227	None:intergenic	30.0%
TCTATTAAGAGATTCAGCAA+TGG	+	chr4.2:72904443-72904462	None:intergenic	30.0%
TTCCTAGTTGAAACCATTAT+TGG	+	chr4.2:72905212-72905231	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	72903483	72905656	72903483	ID=MS.gene043084
chr4.2	mRNA	72903483	72905656	72903483	ID=MS.gene043084.t1;Parent=MS.gene043084
chr4.2	exon	72905410	72905656	72905410	ID=MS.gene043084.t1.exon1;Parent=MS.gene043084.t1
chr4.2	CDS	72905410	72905656	72905410	ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2	exon	72904969	72905246	72904969	ID=MS.gene043084.t1.exon2;Parent=MS.gene043084.t1
chr4.2	CDS	72904969	72905246	72904969	ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2	exon	72904466	72904630	72904466	ID=MS.gene043084.t1.exon3;Parent=MS.gene043084.t1
chr4.2	CDS	72904466	72904630	72904466	ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2	exon	72904244	72904378	72904244	ID=MS.gene043084.t1.exon4;Parent=MS.gene043084.t1
chr4.2	CDS	72904244	72904378	72904244	ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2	exon	72903483	72903755	72903483	ID=MS.gene043084.t1.exon5;Parent=MS.gene043084.t1
chr4.2	CDS	72903483	72903755	72903483	ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1

Gene Sequence

>MS.gene043084

ATGGGGGAAAGTTCAGGTCTTGGTGCCGATAATTGGGAGTTTGCTTCTTGTTCTTCTATGTCGACCGAGGCTAAGACTTTGGTTTTGCTTGGACGTACCGGGAATGGGAAGAGTGCAACCGGAAATAGTATTCTTGGAAAAAAGGTCTTCAAGTCGAGGACTAGCTCTTCCGGTGTCACCACCTCATGCGAAATGCAAACAACTGAGCTTAATGATGGACAAATTGTGAATGTTATCGACACTCCAGGTAAAGATGTTTTAACTTGTTGCATGCTTTGTTCCACGACTTGATCAGAAATCTCGCGTCTCAATGTTAATCTTGAGAGTTATTGAGTGTGTATGAATTGTGATTACTAATTGTTCAACTATTTTTTTCTTAAAATTCTTGCAAACTTTGTTTACCTTTACAGGATTATTTGATTTTTCGGTTGGAATTGAACTACTTGGCAAAGAAATAGTCAAGTGCATTGATTTGGCAAAGGACGGAATCCACGCCTTAATTGTAGTATTCTCTGTTAGAACACGCTTTACTGAGGAAGAAGAGAGTGCTCTACGGAGCGTGCAGAAATTATTCGGAAGCAAGATTGTTGACTACATGATTATCGTCTTTACCGGGGGAGATGAATTGGAAGAAAATAATGAAACACTGGACCAGTATTTAGGTCGCGATTGTCCAGAGCCTTTAAAGGTTTTTATTACTATCCTTTTTTTTGGTTCATTGGATTTTTTTGTCATAAACCTGTTTTTCTCCAACTTTTGGGGAAAGTTCTAAAATTCCTTGTATGTGTTCTTATTTAGCTTTTCATCTTGTGTTTATTATGAACATTCTTGTTATATAGTGGGAAAAAGATAAGGATACTTAAGCAGCAGAATCTATATTCTTCTTTGTAATGTTTTACTTACCCTATTTGCATGCTAATAAACAATTTAATGTAGCATTTCCTAGTTTTTGAAAATCCATTGCTGAATCTCTTAATAGAAAATTGATAAATTATTGACTTTTAGTTGATGTTAATATTAATGCAGGCAATTCTTTCTCTGTGTGGGAATCGATGTGTGCTTTTCGATAACAAGACTAAGGATGAAAAGAAGCAATCTGACCAAGTTCAACAACTTCTCTCTTTTGTGAACGTGGTAATATCACAGAATGGTGGACGGCCTTATACAGATGAGTTGTTTAAAGAACTAAAGGTATAGGTTTTGCAAATTTCACGTTTTGTTTCTTATATCTTGAAAAAAAATATTGTTGATATCAATGAATTCGTCGTTTGGCTTCAGAAACGAGAAATGGAGCTGCAAAAACAACAAAGAGAGGCTGATGCATTGAAAGGATGTACAAAAGAAGATATATTGGAGCATAAAAAGCAAAGTGAGCAAGCATATAACGACCAGCTGAATCGCATTACTGAGATGGTATGTTTCAATTCTATATTAGATACATTATGGTCTGAAAAAGTGTGCGGGTATCACTCACCTTTCAAGTCGGTATTGTGAATTTGAGTAACGCTCAAATTATATGCTAGTGATACATGTCATAGTGCCAGTCGGTAGTTTTGGTAGTTAAATAGGGGAAATTGTAACGGGAATGTGGCGCTTAGGAAAATAGATAAAACTGAAGCATCCTTAGTTGGGATATAAGGGAACACTTTCTTGTCTTAATCCTTTGGTTTTTAGGGAAGGGATCCCTTGTAATCCAAAGGTTGGCCAGAAGCTAAGTAAAGTCCGACCAATAATGGTTTCAACTAGGAATACCTTATTTGTAGAGAATAAACATTATTAGGGACAATAATGGAATCTATTTAGTTGTTCTAAACATGAAATCTATGGTCTTAATGGTGTTGATCATGTGGCATAATCTAAGATTGATTTTGGTTTTGAACAATTGTTATATGATTTTCTAGGTAGAGTCAAAGTTGAGGGCAGCAACTACAAGGTTGGAGGAACAATTGGCAAAAGAGCAAGCTGCAAGACTAGAGGCAGAAAAGTATGCACATGCTGCTCAAATGAAATCAGATGAAGAAATTATGAAACTCAGAAGAAATCTTGAGAAGGCACATGAAGAACTTCGCCTGCGAGCTCATGATACATCATTTAAGAAACTCAGAAGACATTTTGAGCAAGCACAAGGAGAACTTCGCAGGCGAGTGCCAGAAGATCGGTGTGCTATTCTCTGA

Protein sequence

>MS.gene043084.t1

MGESSGLGADNWEFASCSSMSTEAKTLVLLGRTGNGKSATGNSILGKKVFKSRTSSSGVTTSCEMQTTELNDGQIVNVIDTPGLFDFSVGIELLGKEIVKCIDLAKDGIHALIVVFSVRTRFTEEEESALRSVQKLFGSKIVDYMIIVFTGGDELEENNETLDQYLGRDCPEPLKAILSLCGNRCVLFDNKTKDEKKQSDQVQQLLSFVNVVISQNGGRPYTDELFKELKKREMELQKQQREADALKGCTKEDILEHKKQSEQAYNDQLNRITEMVESKLRAATTRLEEQLAKEQAARLEAEKYAHAAQMKSDEEIMKLRRNLEKAHEELRLRAHDTSFKKLRRHFEQAQGELRRRVPEDRCAIL