AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043084.t1 MTR_4g032350 96.712 365 12 0 1 365 1 365 0.0 723
MS.gene043084.t1 MTR_4g032300 80.826 339 61 2 1 338 1 336 0.0 554
MS.gene043084.t1 MTR_4g032220 71.903 331 87 1 10 334 9 339 2.63e-163 461
MS.gene043084.t1 MTR_4g032240 65.465 333 107 2 10 334 9 341 5.81e-150 427
MS.gene043084.t1 MTR_4g032330 77.778 63 14 0 276 338 17 79 2.74e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043084.t1 AT1G33970 58.696 322 129 2 10 331 13 330 5.58e-123 358
MS.gene043084.t1 AT1G33970 58.696 322 129 2 10 331 13 330 5.58e-123 358
MS.gene043084.t1 AT1G33970 58.696 322 129 2 10 331 13 330 5.58e-123 358
MS.gene043084.t1 AT1G33970 58.696 322 129 2 10 331 13 330 5.58e-123 358
MS.gene043084.t1 AT1G33970 58.801 267 106 2 10 276 13 275 4.98e-101 300
MS.gene043084.t1 AT1G33900 47.810 274 142 1 18 291 13 285 1.39e-88 270
MS.gene043084.t1 AT1G33950 48.718 273 139 1 21 293 13 284 3.12e-87 266
MS.gene043084.t1 AT4G09940 47.492 299 151 6 24 319 47 342 4.69e-85 263
MS.gene043084.t1 AT4G09940 47.492 299 151 6 24 319 90 385 3.49e-84 262
MS.gene043084.t1 AT1G33930 45.936 283 149 2 9 291 23 301 4.87e-82 253
MS.gene043084.t1 AT1G33960 49.446 271 134 2 13 283 33 300 1.08e-81 253
MS.gene043084.t1 AT1G33960 49.446 271 134 2 13 283 57 324 2.60e-81 253
MS.gene043084.t1 AT4G09950 44.242 330 169 7 3 329 4 321 1.05e-80 250
MS.gene043084.t1 AT1G33950 46.886 273 138 2 21 293 13 278 2.13e-80 248
MS.gene043084.t1 AT2G26820 43.293 328 166 5 20 338 1 317 2.55e-78 244
MS.gene043084.t1 AT2G26820 43.114 334 170 5 20 344 1 323 9.07e-78 244
MS.gene043084.t1 AT2G26820 43.293 328 166 5 20 338 1 317 2.24e-76 243
MS.gene043084.t1 AT2G26820 43.478 322 170 5 20 329 1 322 8.56e-76 241
MS.gene043084.t1 AT1G33910 46.520 273 140 2 19 291 8 274 1.83e-75 235
MS.gene043084.t1 AT1G33890 42.025 326 161 6 18 341 7 306 7.32e-74 233
MS.gene043084.t1 AT1G33890 42.025 326 161 6 18 341 7 306 7.32e-74 233
MS.gene043084.t1 AT4G09930 42.949 312 167 6 24 333 26 328 3.09e-69 221
MS.gene043084.t1 AT1G33870 43.348 233 130 1 49 281 1 231 1.01e-66 211
MS.gene043084.t1 AT1G33830 47.368 209 110 0 27 235 11 219 9.08e-66 208
MS.gene043084.t1 AT1G33880 40.376 213 121 2 18 230 17 223 1.92e-55 182
MS.gene043084.t1 AT1G33880 40.376 213 121 2 18 230 17 223 1.92e-55 182
MS.gene043084.t1 AT4G09950 42.353 255 142 5 77 329 7 258 1.19e-53 178

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGTCTTGGTGCCGATAAT+TGG 0.262974 4.2:-72905621 MS.gene043084:CDS
TTAAACAACTCATCTGTATA+AGG 0.274695 4.2:+72904476 None:intergenic
CGATTGTCCAGAGCCTTTAA+AGG 0.279472 4.2:-72904968 MS.gene043084:intron
TACATGATTATCGTCTTTAC+CGG 0.324469 4.2:-72905042 MS.gene043084:CDS
AACAGAGAATACTACAATTA+AGG 0.334336 4.2:+72905140 None:intergenic
GGTTGCACTCTTCCCATTCC+CGG 0.338813 4.2:+72905537 None:intergenic
AGAATAGCACACCGATCTTC+TGG 0.341306 4.2:+72903487 None:intergenic
AATAGTCAAGTGCATTGATT+TGG 0.350778 4.2:-72905181 MS.gene043084:CDS
GAAACACTGGACCAGTATTT+AGG 0.362040 4.2:-72904994 MS.gene043084:CDS
GCAACCGGAAATAGTATTCT+TGG 0.364280 4.2:-72905520 MS.gene043084:CDS
AGAAGCAAACTCCCAATTAT+CGG 0.404869 4.2:+72905609 None:intergenic
TACAAGGTTGGAGGAACAAT+TGG 0.406298 4.2:-72903707 MS.gene043084:CDS
GTCGACCGAGGCTAAGACTT+TGG 0.407299 4.2:-72905575 MS.gene043084:CDS
TTGCTTGGACGTACCGGGAA+TGG 0.417653 4.2:-72905550 MS.gene043084:CDS
AGGTCTTGGTGCCGATAATT+GGG 0.419484 4.2:-72905620 MS.gene043084:CDS
ATGTACAAAAGAAGATATAT+TGG 0.429182 4.2:-72904303 MS.gene043084:CDS
CGGAGCGTGCAGAAATTATT+CGG 0.444715 4.2:-72905081 MS.gene043084:CDS
TGCTTGGACGTACCGGGAAT+GGG 0.450806 4.2:-72905549 MS.gene043084:CDS
TGAGTTGTTTAAAGAACTAA+AGG 0.456734 4.2:-72904465 MS.gene043084:intron
GACAATCGCGACCTAAATAC+TGG 0.463624 4.2:+72904983 None:intergenic
TTGGCTTCAGAAACGAGAAA+TGG 0.469540 4.2:-72904366 MS.gene043084:intron
TCGGTTGGAATTGAACTACT+TGG 0.471172 4.2:-72905210 MS.gene043084:CDS
AAGAGAGAAGTTGTTGAACT+TGG 0.473678 4.2:+72904534 None:intergenic
CTAGGTAGAGTCAAAGTTGA+GGG 0.475814 4.2:-72903737 MS.gene043084:intron
CAAACAACTGAGCTTAATGA+TGG 0.498734 4.2:-72905439 MS.gene043084:CDS
TTCTTCCAATTCATCTCCCC+CGG 0.507786 4.2:+72905023 None:intergenic
AAGTCGAGGACTAGCTCTTC+CGG 0.512151 4.2:-72905484 MS.gene043084:CDS
AGGCAATTCTTTCTCTGTGT+GGG 0.516428 4.2:-72904610 MS.gene043084:CDS
TGCATTGATTTGGCAAAGGA+CGG 0.519113 4.2:-72905171 MS.gene043084:CDS
GGGAATGGGAAGAGTGCAAC+CGG 0.533029 4.2:-72905535 MS.gene043084:CDS
AAGCACAAGGAGAACTTCGC+AGG 0.539451 4.2:-72903516 MS.gene043084:CDS
AGGAAGAAGAGAGTGCTCTA+CGG 0.540042 4.2:-72905101 MS.gene043084:CDS
AGTTGTTTGCATTTCGCATG+AGG 0.544861 4.2:+72905453 None:intergenic
ACATGATTATCGTCTTTACC+GGG 0.549360 4.2:-72905041 MS.gene043084:CDS
TCTCAGTAATGCGATTCAGC+TGG 0.552598 4.2:+72904246 None:intergenic
AGTTGAGGGCAGCAACTACA+AGG 0.558512 4.2:-72903723 MS.gene043084:CDS
AGAGAGGCTGATGCATTGAA+AGG 0.561590 4.2:-72904326 MS.gene043084:CDS
TTCGCATGAGGTGGTGACAC+CGG 0.562942 4.2:+72905465 None:intergenic
GAGGGCAGCAACTACAAGGT+TGG 0.566036 4.2:-72903719 MS.gene043084:CDS
CAGGCAATTCTTTCTCTGTG+TGG 0.576595 4.2:-72904611 MS.gene043084:CDS
GGAAGAAAATAATGAAACAC+TGG 0.577525 4.2:-72905007 MS.gene043084:CDS
GTGAATGTTATCGACACTCC+AGG 0.584952 4.2:-72905409 MS.gene043084:intron
CAAAACCAAAGTCTTAGCCT+CGG 0.594491 4.2:+72905570 None:intergenic
GCTGAATCGCATTACTGAGA+TGG 0.594828 4.2:-72904243 MS.gene043084:intron
CAAGTGCATTGATTTGGCAA+AGG 0.599510 4.2:-72905175 MS.gene043084:CDS
GGCAGCAACTACAAGGTTGG+AGG 0.599892 4.2:-72903716 MS.gene043084:CDS
GCAGGCGAGTGCCAGAAGAT+CGG 0.608230 4.2:-72903498 MS.gene043084:CDS
TCTAGGTAGAGTCAAAGTTG+AGG 0.615435 4.2:-72903738 MS.gene043084:intron
TTGTTCTTCTATGTCGACCG+AGG 0.619257 4.2:-72905587 MS.gene043084:CDS
TGTTTGCATTTCGCATGAGG+TGG 0.621167 4.2:+72905456 None:intergenic
ACTCAGAAGAAATCTTGAGA+AGG 0.625364 4.2:-72903605 MS.gene043084:CDS
AGAGCAAGCTGCAAGACTAG+AGG 0.632155 4.2:-72903680 MS.gene043084:CDS
ATGATGTATCATGAGCTCGC+AGG 0.646980 4.2:+72903566 None:intergenic
ATGATTATCGTCTTTACCGG+GGG 0.649473 4.2:-72905039 MS.gene043084:CDS
TGTTAGAACACGCTTTACTG+AGG 0.655556 4.2:-72905121 MS.gene043084:CDS
CATGATTATCGTCTTTACCG+GGG 0.681075 4.2:-72905040 MS.gene043084:CDS
AACGTGGTAATATCACAGAA+TGG 0.694251 4.2:-72904506 MS.gene043084:CDS
AGAATACTACAATTAAGGCG+TGG 0.694461 4.2:+72905145 None:intergenic
TAATATCACAGAATGGTGGA+CGG 0.698141 4.2:-72904499 MS.gene043084:CDS
GTGGTAATATCACAGAATGG+TGG 0.698978 4.2:-72904503 MS.gene043084:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAATAAAAACCTTTAA+AGG + chr4.2:72904165-72904184 None:intergenic 15.0%
!! ATTCTATATTAGATACATTA+TGG - chr4.2:72904906-72904925 MS.gene043084:intron 15.0%
!!! TTTATTACTATCCTTTTTTT+TGG - chr4.2:72904174-72904193 MS.gene043084:intron 15.0%
!! AAAATCAAATAATCCTGTAA+AGG + chr4.2:72903887-72903906 None:intergenic 20.0%
!! AAATAGTATTCTTGGAAAAA+AGG - chr4.2:72903605-72903624 MS.gene043084:CDS 20.0%
!! ATGTACAAAAGAAGATATAT+TGG - chr4.2:72904814-72904833 MS.gene043084:intron 20.0%
!! ATGTTTATTCTCTACAAATA+AGG + chr4.2:72905237-72905256 None:intergenic 20.0%
!! GTAGAGAATAAACATTATTA+GGG - chr4.2:72905242-72905261 MS.gene043084:intron 20.0%
!! TGTAGAGAATAAACATTATT+AGG - chr4.2:72905241-72905260 MS.gene043084:intron 20.0%
!!! CAATTGTTATATGATTTTCT+AGG - chr4.2:72905362-72905381 MS.gene043084:intron 20.0%
!!! TACAGGATTATTTGATTTTT+CGG - chr4.2:72903888-72903907 MS.gene043084:intron 20.0%
! AACAGAGAATACTACAATTA+AGG + chr4.2:72903980-72903999 None:intergenic 25.0%
! AACATTATTAGGGACAATAA+TGG - chr4.2:72905252-72905271 MS.gene043084:intron 25.0%
! AATCCAATGAACCAAAAAAA+AGG + chr4.2:72904188-72904207 None:intergenic 25.0%
! GTTGATGTTAATATTAATGC+AGG - chr4.2:72904487-72904506 MS.gene043084:CDS 25.0%
! TGAGTTGTTTAAAGAACTAA+AGG - chr4.2:72904652-72904671 MS.gene043084:intron 25.0%
! TGTTTATTAGCATGCAAATA+GGG + chr4.2:72904388-72904407 None:intergenic 25.0%
! TTAAACAACTCATCTGTATA+AGG + chr4.2:72904644-72904663 None:intergenic 25.0%
! TTAAATAGGGGAAATTGTAA+CGG - chr4.2:72905043-72905062 MS.gene043084:CDS 25.0%
! TTGTTTATTAGCATGCAAAT+AGG + chr4.2:72904389-72904408 None:intergenic 25.0%
!! GAACATTCTTGTTATATAGT+GGG - chr4.2:72904303-72904322 MS.gene043084:CDS 25.0%
!! GTTTAAAGAACTAAAGGTAT+AGG - chr4.2:72904658-72904677 MS.gene043084:intron 25.0%
!! TATATAGTGGGAAAAAGATA+AGG - chr4.2:72904315-72904334 MS.gene043084:CDS 25.0%
!! TGAACATTCTTGTTATATAG+TGG - chr4.2:72904302-72904321 MS.gene043084:CDS 25.0%
!! TGTTCTAAACATGAAATCTA+TGG - chr4.2:72905287-72905306 MS.gene043084:intron 25.0%
!! TTTTCCAAGAATACTATTTC+CGG + chr4.2:72903604-72903623 None:intergenic 25.0%
!!! GCATAATCTAAGATTGATTT+TGG - chr4.2:72905332-72905351 MS.gene043084:intron 25.0%
!!! GTAGTTTTGGTAGTTAAATA+GGG - chr4.2:72905030-72905049 MS.gene043084:CDS 25.0%
!!! TAGTTTTGGTAGTTAAATAG+GGG - chr4.2:72905031-72905050 MS.gene043084:CDS 25.0%
!!! TATCCTTTTTTTTGGTTCAT+TGG - chr4.2:72904182-72904201 MS.gene043084:intron 25.0%
!!! TCTTAATCCTTTGGTTTTTA+GGG - chr4.2:72905136-72905155 MS.gene043084:CDS 25.0%
ACTTTCTTGTCTTAATCCTT+TGG - chr4.2:72905127-72905146 MS.gene043084:CDS 30.0%
ATATCAATGAATTCGTCGTT+TGG - chr4.2:72904732-72904751 MS.gene043084:intron 30.0%
CAAGTTAAAACATCTTTACC+TGG + chr4.2:72903729-72903748 None:intergenic 30.0%
GCTAAATAAGAACACATACA+AGG + chr4.2:72904262-72904281 None:intergenic 30.0%
GGAAGAAAATAATGAAACAC+TGG - chr4.2:72904110-72904129 MS.gene043084:intron 30.0%
TAAATAGGGGAAATTGTAAC+GGG - chr4.2:72905044-72905063 MS.gene043084:CDS 30.0%
TACATGATTATCGTCTTTAC+CGG - chr4.2:72904075-72904094 MS.gene043084:intron 30.0%
TAGTTGAAACCATTATTGGT+CGG + chr4.2:72905208-72905227 None:intergenic 30.0%
TCTATTAAGAGATTCAGCAA+TGG + chr4.2:72904443-72904462 None:intergenic 30.0%
TTCCTAGTTGAAACCATTAT+TGG + chr4.2:72905212-72905231 None:intergenic 30.0%
! ATAAAAACCTTTAAAGGCTC+TGG + chr4.2:72904159-72904178 None:intergenic 30.0%
! CAAACTTTGTTTACCTTTAC+AGG - chr4.2:72903871-72903890 MS.gene043084:intron 30.0%
! CATGAAATCTATGGTCTTAA+TGG - chr4.2:72905296-72905315 MS.gene043084:intron 30.0%
!! AATAGTCAAGTGCATTGATT+TGG - chr4.2:72903936-72903955 MS.gene043084:intron 30.0%
!! GCAATGGATTTTCAAAAACT+AGG + chr4.2:72904427-72904446 None:intergenic 30.0%
!! GGATTATTTGATTTTTCGGT+TGG - chr4.2:72903892-72903911 MS.gene043084:intron 30.0%
!!! GGTAGTTTTGGTAGTTAAAT+AGG - chr4.2:72905029-72905048 MS.gene043084:CDS 30.0%
!!! GTCTTAATCCTTTGGTTTTT+AGG - chr4.2:72905135-72905154 MS.gene043084:CDS 30.0%
AACGTGGTAATATCACAGAA+TGG - chr4.2:72904611-72904630 MS.gene043084:CDS 35.0%
AAGAGAGAAGTTGTTGAACT+TGG + chr4.2:72904586-72904605 None:intergenic 35.0%
AAGTAAAGTCCGACCAATAA+TGG - chr4.2:72905196-72905215 MS.gene043084:CDS 35.0%
ACATGATTATCGTCTTTACC+GGG - chr4.2:72904076-72904095 MS.gene043084:intron 35.0%
ACTCAGAAGAAATCTTGAGA+AGG - chr4.2:72905512-72905531 MS.gene043084:CDS 35.0%
AGAAGCAAACTCCCAATTAT+CGG + chr4.2:72903511-72903530 None:intergenic 35.0%
AGAATACTACAATTAAGGCG+TGG + chr4.2:72903975-72903994 None:intergenic 35.0%
CAAACAACTGAGCTTAATGA+TGG - chr4.2:72903678-72903697 MS.gene043084:CDS 35.0%
CATCCTTAGTTGGGATATAA+GGG - chr4.2:72905101-72905120 MS.gene043084:CDS 35.0%
GACCAATAATGGTTTCAACT+AGG - chr4.2:72905207-72905226 MS.gene043084:CDS 35.0%
TTAGAACTTTCCCCAAAAGT+TGG + chr4.2:72904235-72904254 None:intergenic 35.0%
! AAAACTGAAGCATCCTTAGT+TGG - chr4.2:72905091-72905110 MS.gene043084:CDS 35.0%
! AAACTGAAGCATCCTTAGTT+GGG - chr4.2:72905092-72905111 MS.gene043084:CDS 35.0%
! GCTTTTCGATAACAAGACTA+AGG - chr4.2:72904541-72904560 MS.gene043084:CDS 35.0%
! TAATATCACAGAATGGTGGA+CGG - chr4.2:72904618-72904637 MS.gene043084:intron 35.0%
! TTATGGTCTGAAAAAGTGTG+CGG - chr4.2:72904923-72904942 MS.gene043084:intron 35.0%
!! ACCTGTTTTTCTCCAACTTT+TGG - chr4.2:72904220-72904239 MS.gene043084:intron 35.0%
!! ATTCACAATACCGACTTGAA+AGG + chr4.2:72904959-72904978 None:intergenic 35.0%
!! CCTGTTTTTCTCCAACTTTT+GGG - chr4.2:72904221-72904240 MS.gene043084:intron 35.0%
!! CTGTTTTTCTCCAACTTTTG+GGG - chr4.2:72904222-72904241 MS.gene043084:intron 35.0%
!! TCTTAATGGTGTTGATCATG+TGG - chr4.2:72905310-72905329 MS.gene043084:intron 35.0%
!!! AATCCTTTGGTTTTTAGGGA+AGG - chr4.2:72905140-72905159 MS.gene043084:CDS 35.0%
!!! ATCCTTTGGTTTTTAGGGAA+GGG - chr4.2:72905141-72905160 MS.gene043084:CDS 35.0%
AGGCAATTCTTTCTCTGTGT+GGG - chr4.2:72904507-72904526 MS.gene043084:CDS 40.0%
AGTTGTTTGCATTTCGCATG+AGG + chr4.2:72903667-72903686 None:intergenic 40.0%
ATACATGTCATAGTGCCAGT+CGG - chr4.2:72905008-72905027 MS.gene043084:CDS 40.0%
ATCCCTTCCCTAAAAACCAA+AGG + chr4.2:72905146-72905165 None:intergenic 40.0%
ATCCCTTGTAATCCAAAGGT+TGG - chr4.2:72905164-72905183 MS.gene043084:CDS 40.0%
ATGATTATCGTCTTTACCGG+GGG - chr4.2:72904078-72904097 MS.gene043084:intron 40.0%
CAAAACCAAAGTCTTAGCCT+CGG + chr4.2:72903550-72903569 None:intergenic 40.0%
CATGATTATCGTCTTTACCG+GGG - chr4.2:72904077-72904096 MS.gene043084:intron 40.0%
CCCAAAAGTTGGAGAAAAAC+AGG + chr4.2:72904224-72904243 None:intergenic 40.0%
CTAGGTAGAGTCAAAGTTGA+GGG - chr4.2:72905380-72905399 MS.gene043084:intron 40.0%
GAAAAAAGGTCTTCAAGTCG+AGG - chr4.2:72903619-72903638 MS.gene043084:CDS 40.0%
GAAACACTGGACCAGTATTT+AGG - chr4.2:72904123-72904142 MS.gene043084:intron 40.0%
GCAACCGGAAATAGTATTCT+TGG - chr4.2:72903597-72903616 MS.gene043084:CDS 40.0%
GCATCCTTAGTTGGGATATA+AGG - chr4.2:72905100-72905119 MS.gene043084:CDS 40.0%
GCTGCAAAAACAACAAAGAG+AGG - chr4.2:72904775-72904794 MS.gene043084:intron 40.0%
GTGGTAATATCACAGAATGG+TGG - chr4.2:72904614-72904633 MS.gene043084:intron 40.0%
GTTCCCTTATATCCCAACTA+AGG + chr4.2:72905107-72905126 None:intergenic 40.0%
TAACTACCAAAACTACCGAC+TGG + chr4.2:72905026-72905045 None:intergenic 40.0%
TACAAGGTTGGAGGAACAAT+TGG - chr4.2:72905410-72905429 MS.gene043084:CDS 40.0%
TCGGTTGGAATTGAACTACT+TGG - chr4.2:72903907-72903926 MS.gene043084:intron 40.0%
TCTAGGTAGAGTCAAAGTTG+AGG - chr4.2:72905379-72905398 MS.gene043084:intron 40.0%
TGTTAGAACACGCTTTACTG+AGG - chr4.2:72903996-72904015 MS.gene043084:intron 40.0%
TTGGCTTCAGAAACGAGAAA+TGG - chr4.2:72904751-72904770 MS.gene043084:intron 40.0%
! ACTTCTCTCTTTTGTGAACG+TGG - chr4.2:72904595-72904614 MS.gene043084:CDS 40.0%
! AGACATTTTGAGCAAGCACA+AGG - chr4.2:72905588-72905607 MS.gene043084:CDS 40.0%
! GTATCACTCACCTTTCAAGT+CGG - chr4.2:72904946-72904965 MS.gene043084:intron 40.0%
! TATGGTCTGAAAAAGTGTGC+GGG - chr4.2:72904924-72904943 MS.gene043084:intron 40.0%
!! CAAGTGCATTGATTTGGCAA+AGG - chr4.2:72903942-72903961 MS.gene043084:intron 40.0%
!! TGCATTGATTTGGCAAAGGA+CGG - chr4.2:72903946-72903965 MS.gene043084:intron 40.0%
!!! GCTAAGACTTTGGTTTTGCT+TGG - chr4.2:72903552-72903571 MS.gene043084:CDS 40.0%
AGAATAGCACACCGATCTTC+TGG + chr4.2:72905633-72905652 None:intergenic 45.0%
AGAGAGGCTGATGCATTGAA+AGG - chr4.2:72904791-72904810 MS.gene043084:intron 45.0%
AGGGATCCCTTGTAATCCAA+AGG - chr4.2:72905160-72905179 MS.gene043084:CDS 45.0%
ATGATGTATCATGAGCTCGC+AGG + chr4.2:72905554-72905573 None:intergenic 45.0%
CAGGCAATTCTTTCTCTGTG+TGG - chr4.2:72904506-72904525 MS.gene043084:CDS 45.0%
CGAGATTTCTGATCAAGTCG+TGG + chr4.2:72903766-72903785 None:intergenic 45.0%
CGATTGTCCAGAGCCTTTAA+AGG - chr4.2:72904149-72904168 MS.gene043084:intron 45.0%
CGGAGCGTGCAGAAATTATT+CGG - chr4.2:72904036-72904055 MS.gene043084:intron 45.0%
GACAATCGCGACCTAAATAC+TGG + chr4.2:72904137-72904156 None:intergenic 45.0%
GCTGAATCGCATTACTGAGA+TGG - chr4.2:72904874-72904893 MS.gene043084:intron 45.0%
GGCCAACCTTTGGATTACAA+GGG + chr4.2:72905169-72905188 None:intergenic 45.0%
GTCGGACTTTACTTAGCTTC+TGG + chr4.2:72905190-72905209 None:intergenic 45.0%
GTGAATGTTATCGACACTCC+AGG - chr4.2:72903708-72903727 MS.gene043084:CDS 45.0%
TCTCAGTAATGCGATTCAGC+TGG + chr4.2:72904874-72904893 None:intergenic 45.0%
TGGCCAACCTTTGGATTACA+AGG + chr4.2:72905170-72905189 None:intergenic 45.0%
TGTTTGCATTTCGCATGAGG+TGG + chr4.2:72903664-72903683 None:intergenic 45.0%
TTCTTCCAATTCATCTCCCC+CGG + chr4.2:72904097-72904116 None:intergenic 45.0%
TTGTTCTTCTATGTCGACCG+AGG - chr4.2:72903530-72903549 MS.gene043084:CDS 45.0%
! ATAGTGCCAGTCGGTAGTTT+TGG - chr4.2:72905017-72905036 MS.gene043084:CDS 45.0%
! GGGAAATTGTAACGGGAATG+TGG - chr4.2:72905051-72905070 MS.gene043084:CDS 45.0%
!! AGGAAGAAGAGAGTGCTCTA+CGG - chr4.2:72904016-72904035 MS.gene043084:intron 45.0%
!! AGGTCTTGGTGCCGATAATT+GGG - chr4.2:72903497-72903516 MS.gene043084:CDS 45.0%
!!! TTGGTTTTGCTTGGACGTAC+CGG - chr4.2:72903561-72903580 MS.gene043084:CDS 45.0%
AAGCACAAGGAGAACTTCGC+AGG - chr4.2:72905601-72905620 MS.gene043084:CDS 50.0%
AGAGCAAGCTGCAAGACTAG+AGG - chr4.2:72905437-72905456 MS.gene043084:CDS 50.0%
AGTTGAGGGCAGCAACTACA+AGG - chr4.2:72905394-72905413 MS.gene043084:intron 50.0%
ATGGGGGAAAGTTCAGGTCT+TGG - chr4.2:72903483-72903502 MS.gene043084:CDS 50.0%
CTTAGCTTCTGGCCAACCTT+TGG + chr4.2:72905179-72905198 None:intergenic 50.0%
CTTTACCGGGGGAGATGAAT+TGG - chr4.2:72904089-72904108 MS.gene043084:intron 50.0%
!! AAGTCGAGGACTAGCTCTTC+CGG - chr4.2:72903633-72903652 MS.gene043084:CDS 50.0%
!! CAGGTCTTGGTGCCGATAAT+TGG - chr4.2:72903496-72903515 MS.gene043084:CDS 50.0%
!! TGGTTTTGCTTGGACGTACC+GGG - chr4.2:72903562-72903581 MS.gene043084:CDS 50.0%
GAGGGCAGCAACTACAAGGT+TGG - chr4.2:72905398-72905417 MS.gene043084:intron 55.0%
GGCAGCAACTACAAGGTTGG+AGG - chr4.2:72905401-72905420 MS.gene043084:intron 55.0%
GGTTGCACTCTTCCCATTCC+CGG + chr4.2:72903583-72903602 None:intergenic 55.0%
GTCGACCGAGGCTAAGACTT+TGG - chr4.2:72903542-72903561 MS.gene043084:CDS 55.0%
TGCTTGGACGTACCGGGAAT+GGG - chr4.2:72903568-72903587 MS.gene043084:CDS 55.0%
TTCGCATGAGGTGGTGACAC+CGG + chr4.2:72903655-72903674 None:intergenic 55.0%
TTGCTTGGACGTACCGGGAA+TGG - chr4.2:72903567-72903586 MS.gene043084:CDS 55.0%
! GGGAATGGGAAGAGTGCAAC+CGG - chr4.2:72903582-72903601 MS.gene043084:CDS 55.0%
! GTAACGGGAATGTGGCGCTT+AGG - chr4.2:72905059-72905078 MS.gene043084:CDS 55.0%
GCAGGCGAGTGCCAGAAGAT+CGG - chr4.2:72905619-72905638 MS.gene043084:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 72903483 72905656 72903483 ID=MS.gene043084
chr4.2 mRNA 72903483 72905656 72903483 ID=MS.gene043084.t1;Parent=MS.gene043084
chr4.2 exon 72905410 72905656 72905410 ID=MS.gene043084.t1.exon1;Parent=MS.gene043084.t1
chr4.2 CDS 72905410 72905656 72905410 ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2 exon 72904969 72905246 72904969 ID=MS.gene043084.t1.exon2;Parent=MS.gene043084.t1
chr4.2 CDS 72904969 72905246 72904969 ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2 exon 72904466 72904630 72904466 ID=MS.gene043084.t1.exon3;Parent=MS.gene043084.t1
chr4.2 CDS 72904466 72904630 72904466 ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2 exon 72904244 72904378 72904244 ID=MS.gene043084.t1.exon4;Parent=MS.gene043084.t1
chr4.2 CDS 72904244 72904378 72904244 ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
chr4.2 exon 72903483 72903755 72903483 ID=MS.gene043084.t1.exon5;Parent=MS.gene043084.t1
chr4.2 CDS 72903483 72903755 72903483 ID=cds.MS.gene043084.t1;Parent=MS.gene043084.t1
Gene Sequence

>MS.gene043084

ATGGGGGAAAGTTCAGGTCTTGGTGCCGATAATTGGGAGTTTGCTTCTTGTTCTTCTATGTCGACCGAGGCTAAGACTTTGGTTTTGCTTGGACGTACCGGGAATGGGAAGAGTGCAACCGGAAATAGTATTCTTGGAAAAAAGGTCTTCAAGTCGAGGACTAGCTCTTCCGGTGTCACCACCTCATGCGAAATGCAAACAACTGAGCTTAATGATGGACAAATTGTGAATGTTATCGACACTCCAGGTAAAGATGTTTTAACTTGTTGCATGCTTTGTTCCACGACTTGATCAGAAATCTCGCGTCTCAATGTTAATCTTGAGAGTTATTGAGTGTGTATGAATTGTGATTACTAATTGTTCAACTATTTTTTTCTTAAAATTCTTGCAAACTTTGTTTACCTTTACAGGATTATTTGATTTTTCGGTTGGAATTGAACTACTTGGCAAAGAAATAGTCAAGTGCATTGATTTGGCAAAGGACGGAATCCACGCCTTAATTGTAGTATTCTCTGTTAGAACACGCTTTACTGAGGAAGAAGAGAGTGCTCTACGGAGCGTGCAGAAATTATTCGGAAGCAAGATTGTTGACTACATGATTATCGTCTTTACCGGGGGAGATGAATTGGAAGAAAATAATGAAACACTGGACCAGTATTTAGGTCGCGATTGTCCAGAGCCTTTAAAGGTTTTTATTACTATCCTTTTTTTTGGTTCATTGGATTTTTTTGTCATAAACCTGTTTTTCTCCAACTTTTGGGGAAAGTTCTAAAATTCCTTGTATGTGTTCTTATTTAGCTTTTCATCTTGTGTTTATTATGAACATTCTTGTTATATAGTGGGAAAAAGATAAGGATACTTAAGCAGCAGAATCTATATTCTTCTTTGTAATGTTTTACTTACCCTATTTGCATGCTAATAAACAATTTAATGTAGCATTTCCTAGTTTTTGAAAATCCATTGCTGAATCTCTTAATAGAAAATTGATAAATTATTGACTTTTAGTTGATGTTAATATTAATGCAGGCAATTCTTTCTCTGTGTGGGAATCGATGTGTGCTTTTCGATAACAAGACTAAGGATGAAAAGAAGCAATCTGACCAAGTTCAACAACTTCTCTCTTTTGTGAACGTGGTAATATCACAGAATGGTGGACGGCCTTATACAGATGAGTTGTTTAAAGAACTAAAGGTATAGGTTTTGCAAATTTCACGTTTTGTTTCTTATATCTTGAAAAAAAATATTGTTGATATCAATGAATTCGTCGTTTGGCTTCAGAAACGAGAAATGGAGCTGCAAAAACAACAAAGAGAGGCTGATGCATTGAAAGGATGTACAAAAGAAGATATATTGGAGCATAAAAAGCAAAGTGAGCAAGCATATAACGACCAGCTGAATCGCATTACTGAGATGGTATGTTTCAATTCTATATTAGATACATTATGGTCTGAAAAAGTGTGCGGGTATCACTCACCTTTCAAGTCGGTATTGTGAATTTGAGTAACGCTCAAATTATATGCTAGTGATACATGTCATAGTGCCAGTCGGTAGTTTTGGTAGTTAAATAGGGGAAATTGTAACGGGAATGTGGCGCTTAGGAAAATAGATAAAACTGAAGCATCCTTAGTTGGGATATAAGGGAACACTTTCTTGTCTTAATCCTTTGGTTTTTAGGGAAGGGATCCCTTGTAATCCAAAGGTTGGCCAGAAGCTAAGTAAAGTCCGACCAATAATGGTTTCAACTAGGAATACCTTATTTGTAGAGAATAAACATTATTAGGGACAATAATGGAATCTATTTAGTTGTTCTAAACATGAAATCTATGGTCTTAATGGTGTTGATCATGTGGCATAATCTAAGATTGATTTTGGTTTTGAACAATTGTTATATGATTTTCTAGGTAGAGTCAAAGTTGAGGGCAGCAACTACAAGGTTGGAGGAACAATTGGCAAAAGAGCAAGCTGCAAGACTAGAGGCAGAAAAGTATGCACATGCTGCTCAAATGAAATCAGATGAAGAAATTATGAAACTCAGAAGAAATCTTGAGAAGGCACATGAAGAACTTCGCCTGCGAGCTCATGATACATCATTTAAGAAACTCAGAAGACATTTTGAGCAAGCACAAGGAGAACTTCGCAGGCGAGTGCCAGAAGATCGGTGTGCTATTCTCTGA
Protein sequence

>MS.gene043084.t1

MGESSGLGADNWEFASCSSMSTEAKTLVLLGRTGNGKSATGNSILGKKVFKSRTSSSGVTTSCEMQTTELNDGQIVNVIDTPGLFDFSVGIELLGKEIVKCIDLAKDGIHALIVVFSVRTRFTEEEESALRSVQKLFGSKIVDYMIIVFTGGDELEENNETLDQYLGRDCPEPLKAILSLCGNRCVLFDNKTKDEKKQSDQVQQLLSFVNVVISQNGGRPYTDELFKELKKREMELQKQQREADALKGCTKEDILEHKKQSEQAYNDQLNRITEMVESKLRAATTRLEEQLAKEQAARLEAEKYAHAAQMKSDEEIMKLRRNLEKAHEELRLRAHDTSFKKLRRHFEQAQGELRRRVPEDRCAIL