AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043241

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043241.t1 MTR_7g010300 94.785 326 12 3 17 341 20 341 0.0 513
MS.gene043241.t1 MTR_6g012280 63.218 261 80 6 35 287 36 288 3.63e-78 243
MS.gene043241.t1 MTR_1g077020 44.390 205 88 6 83 283 4 186 6.24e-53 173
MS.gene043241.t1 MTR_3g100650 43.541 209 96 5 85 283 77 273 1.15e-48 165
MS.gene043241.t1 MTR_5g020510 43.062 209 100 7 86 284 97 296 4.84e-48 164
MS.gene043241.t1 MTR_5g032600 44.811 212 83 7 88 283 78 271 1.95e-46 159
MS.gene043241.t1 MTR_5g065440 37.175 269 123 7 40 283 20 267 1.00e-44 154
MS.gene043241.t1 MTR_4g134580 40.928 237 98 9 88 284 113 347 1.03e-44 157
MS.gene043241.t1 MTR_2g076780 37.500 224 108 6 78 283 27 236 2.84e-40 142
MS.gene043241.t1 MTR_6g073013 38.860 193 66 5 88 279 19 160 2.27e-37 132
MS.gene043241.t1 MTR_8g069080 35.345 232 108 7 73 279 49 263 2.07e-36 132
MS.gene043241.t1 MTR_8g467340 74.194 62 16 0 84 145 60 121 4.31e-27 110
MS.gene043241.t1 MTR_8g069380 55.224 67 30 0 217 283 48 114 7.74e-20 84.0
MS.gene043241.t1 MTR_8g051480 59.701 67 26 1 217 283 63 128 2.71e-19 83.2
MS.gene043241.t1 MTR_3g039810 56.338 71 23 2 86 156 18 80 1.12e-17 77.4
MS.gene043241.t1 MTR_6g012220 61.111 54 15 1 85 138 18 65 8.61e-17 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043241.t1 AT5G15210 50.000 272 100 9 22 285 3 246 3.99e-71 223
MS.gene043241.t1 AT1G69600 52.885 208 70 5 83 280 26 215 6.49e-66 208
MS.gene043241.t1 AT3G28920 50.000 294 97 9 32 299 12 281 2.03e-62 201
MS.gene043241.t1 AT5G39760 46.863 271 110 7 32 288 17 267 2.61e-56 186
MS.gene043241.t1 AT1G14440 43.498 223 103 5 86 299 88 296 1.35e-51 173
MS.gene043241.t1 AT1G14440 43.498 223 103 5 86 299 88 296 1.35e-51 173
MS.gene043241.t1 AT2G02540 41.964 224 109 6 84 295 83 297 3.87e-51 172
MS.gene043241.t1 AT2G02540 41.964 224 109 6 84 295 83 297 3.87e-51 172
MS.gene043241.t1 AT4G24660 45.455 198 83 4 86 283 47 219 4.12e-50 167
MS.gene043241.t1 AT4G24660 45.641 195 81 4 86 280 47 216 2.84e-49 165
MS.gene043241.t1 AT5G60480 43.284 201 81 5 82 277 31 203 6.50e-49 164
MS.gene043241.t1 AT5G65410 43.655 197 94 5 86 282 73 252 1.17e-44 154
MS.gene043241.t1 AT1G75240 38.462 234 103 4 85 282 73 301 2.45e-43 152
MS.gene043241.t1 AT2G18350 39.899 198 100 4 88 284 82 261 4.44e-41 144
MS.gene043241.t1 AT3G50890 39.252 214 99 8 88 294 60 249 1.97e-35 129
MS.gene043241.t1 AT5G42780 35.204 196 103 5 88 280 64 238 4.12e-28 110
MS.gene043241.t1 AT1G14687 28.283 198 106 4 83 278 2 165 1.14e-19 85.1
MS.gene043241.t1 AT1G74660 53.521 71 25 2 86 156 37 99 3.41e-19 82.0
MS.gene043241.t1 AT1G74660 61.111 54 19 1 86 139 37 88 8.00e-19 80.9
MS.gene043241.t1 AT1G18835 54.930 71 21 2 86 156 24 83 1.23e-17 77.4
MS.gene043241.t1 AT3G28917 61.404 57 21 1 85 141 30 85 2.68e-17 76.6

Find 95 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGTGTTGGTGTTGGAGTT+GGG 0.196157 7.2:-87132194 None:intergenic
ACAATTCTAGAAAGCGTTTC+AGG 0.216225 7.2:+87132829 MS.gene043241:CDS
GTGGAAAGTGGTGGCTCTTC+AGG 0.239612 7.2:-87132594 None:intergenic
TTGAGAACACCATTTGAAAA+AGG 0.255600 7.2:-87132345 None:intergenic
GGTGGTGTTGGTGTTGGAGT+TGG 0.272963 7.2:-87132195 None:intergenic
AGGGGCGGAGGGGTAGTAAG+AGG 0.274253 7.2:-87132724 None:intergenic
TGCTCTCTCCGCCGCCTTAC+CGG 0.274469 7.2:+87132758 MS.gene043241:CDS
GGTGGTGGTGAGGAGGAATT+TGG 0.278567 7.2:-87132693 None:intergenic
TCAGTTTCATGTTGTTGTTC+TGG 0.293454 7.2:-87132276 None:intergenic
TGTTGTTGAGGTTGTAAATA+TGG 0.305738 7.2:-87132238 None:intergenic
GAGACATTCTTTGTAGGTTA+TGG 0.313584 7.2:-87132430 None:intergenic
TAATATTCTCATTGTTGTTA+AGG 0.328995 7.2:-87133031 None:intergenic
TGGTGTTGGAGTTGGGGTTA+AGG 0.330499 7.2:-87132187 None:intergenic
ATCGTAGTGTTCTTAAGGTT+TGG 0.334173 7.2:+87132970 MS.gene043241:CDS
GGTTGAAGTGGTGGTGGTGG+TGG 0.346158 7.2:-87132377 None:intergenic
TTCATCAACATGGTTTGGTT+TGG 0.350778 7.2:-87132795 None:intergenic
TGTTGATCGTAGTGTTCTTA+AGG 0.355414 7.2:+87132965 MS.gene043241:CDS
TGTAGGTTATGGTGAGTTGA+TGG 0.368698 7.2:-87132419 None:intergenic
CAGAATGAAGGTGGAGTTGT+TGG 0.373866 7.2:+87133140 MS.gene043241:CDS
GGAGTAACTGTTCGTGCTAA+TGG 0.375764 7.2:+87133161 MS.gene043241:CDS
AAGAAGCATGTGAGGGGCGG+AGG 0.375917 7.2:-87132736 None:intergenic
GAGAATTCATCAACATGGTT+TGG 0.380377 7.2:-87132800 None:intergenic
CACAAGAATGTTGAGATTCA+TGG 0.386670 7.2:+87133098 MS.gene043241:CDS
ATTTGGGCTCCGGTGGGAAA+AGG 0.392682 7.2:-87132676 None:intergenic
GTTGGTGGTGGTGTTGGTGT+TGG 0.400036 7.2:-87132201 None:intergenic
TGGTGTTGGTGTTGGAGTTG+GGG 0.405042 7.2:-87132193 None:intergenic
CTGAAATTTGCTGAGAAAGT+TGG 0.415196 7.2:+87132885 MS.gene043241:CDS
GCTCTTCAGGTTCACGGCGG+TGG 0.421733 7.2:-87132581 None:intergenic
TGAATTCACCACAACCATCT+AGG 0.423468 7.2:-87132485 None:intergenic
TATGGTGAGTTGATGGTTGT+TGG 0.424329 7.2:-87132412 None:intergenic
ATTGATGTTGGTGGTGGTGT+TGG 0.426088 7.2:-87132207 None:intergenic
CGGTGGGAAAAGGGTGGTGG+TGG 0.426898 7.2:-87132666 None:intergenic
GAAAAGGGTGGTGGTGGAAG+TGG 0.427112 7.2:-87132660 None:intergenic
TTGTTCTGGTGATTTAGTTA+AGG 0.427703 7.2:-87132262 None:intergenic
CTCCGGTGGGAAAAGGGTGG+TGG 0.429757 7.2:-87132669 None:intergenic
GGTGGTTGAAGTGGTGGTGG+TGG 0.435301 7.2:-87132380 None:intergenic
GGAGGAGATCGGTGGTGGTG+AGG 0.437213 7.2:-87132703 None:intergenic
GGGTAGTAAGAGGAGGAGAT+CGG 0.438670 7.2:-87132714 None:intergenic
GGCGGAGGGGTAGTAAGAGG+AGG 0.440166 7.2:-87132721 None:intergenic
GTGGTGGTGAGGAGGAATTT+GGG 0.444504 7.2:-87132692 None:intergenic
CTAGGTGGTCATGCCCTAGA+TGG 0.446320 7.2:+87132471 MS.gene043241:CDS
GGGCTCCGGTGGGAAAAGGG+TGG 0.457386 7.2:-87132672 None:intergenic
GTTCACGGCGGTGGAAGTTA+CGG 0.458240 7.2:-87132572 None:intergenic
TTTAAGGATGTTGGGTCGGT+TGG 0.464594 7.2:-87132528 None:intergenic
TGAAATTTGCTGAGAAAGTT+GGG 0.467964 7.2:+87132886 MS.gene043241:CDS
TTCAATGACATGGGTGGTTG+TGG 0.469669 7.2:-87132613 None:intergenic
GGGTCGGTTGGTGTTGCTGT+GGG 0.476226 7.2:-87132516 None:intergenic
TGTGGTGGTTGAAGTGGTGG+TGG 0.478966 7.2:-87132383 None:intergenic
ACATGGGTGGTTGTGGAAAG+TGG 0.487507 7.2:-87132606 None:intergenic
GTTGAGGTTGTAAATATGGT+TGG 0.487702 7.2:-87132234 None:intergenic
GGAGATCGGTGGTGGTGAGG+AGG 0.490231 7.2:-87132700 None:intergenic
CACAATCATTATCAGAATGA+AGG 0.494541 7.2:+87133128 MS.gene043241:CDS
AGAAGCATGTGAGGGGCGGA+GGG 0.495592 7.2:-87132735 None:intergenic
GGTTGTTGGTGTTGTTGTGG+TGG 0.497322 7.2:-87132398 None:intergenic
TAAGAGGAGGAGATCGGTGG+TGG 0.498462 7.2:-87132708 None:intergenic
TGGGGTTAAGGTTATGTCCA+TGG 0.499789 7.2:-87132175 None:intergenic
GTGAGGAGGAATTTGGGCTC+CGG 0.500275 7.2:-87132686 None:intergenic
GTGGTGGAAGTGGTTGATGA+CGG 0.500583 7.2:-87132650 None:intergenic
TTTAGTTAAGGTTGTTGTTG+AGG 0.502769 7.2:-87132250 None:intergenic
AGGAGGAATTTGGGCTCCGG+TGG 0.505710 7.2:-87132683 None:intergenic
TTTGGGCTCCGGTGGGAAAA+GGG 0.507171 7.2:-87132675 None:intergenic
GGTGCTATTGATGTTGGTGG+TGG 0.518237 7.2:-87132213 None:intergenic
GTGGTGGCTCTTCAGGTTCA+CGG 0.521077 7.2:-87132587 None:intergenic
GTTGGTGCTATTGATGTTGG+TGG 0.524202 7.2:-87132216 None:intergenic
AACAATGAGAATATTAATGA+TGG 0.527160 7.2:+87133038 MS.gene043241:CDS
TGTTGTTGTGGTGGTTGAAG+TGG 0.528276 7.2:-87132389 None:intergenic
GACCACCTAGGTTTGCTGCA+TGG 0.528612 7.2:-87132458 None:intergenic
TGTTGTGGTGGTTGAAGTGG+TGG 0.528860 7.2:-87132386 None:intergenic
ATGGTTGGTGCTATTGATGT+TGG 0.529625 7.2:-87132219 None:intergenic
GATGGTTGTTGGTGTTGTTG+TGG 0.533088 7.2:-87132401 None:intergenic
GAATTCACCACAACCATCTA+GGG 0.539304 7.2:-87132484 None:intergenic
GAGAGAGCAAGAAGCATGTG+AGG 0.550052 7.2:-87132744 None:intergenic
GAAGCATGTGAGGGGCGGAG+GGG 0.553313 7.2:-87132734 None:intergenic
TGGGTCGGTTGGTGTTGCTG+TGG 0.558596 7.2:-87132517 None:intergenic
TCCTTAAAATGTGCTGCTTG+TGG 0.574232 7.2:+87132543 MS.gene043241:CDS
GGTCATGCCCTAGATGGTTG+TGG 0.575703 7.2:+87132477 MS.gene043241:CDS
TAGTAAGAGGAGGAGATCGG+TGG 0.577001 7.2:-87132711 None:intergenic
TTGTGTTCTTCATCTTCAAG+AGG 0.585430 7.2:-87133080 None:intergenic
AGCAAGAAGCATGTGAGGGG+CGG 0.594492 7.2:-87132739 None:intergenic
AGAGAGCAAGAAGCATGTGA+GGG 0.597359 7.2:-87132743 None:intergenic
AATCATTATCAGAATGAAGG+TGG 0.598316 7.2:+87133131 MS.gene043241:CDS
GTGGAAGTGGTTGATGACGG+TGG 0.599219 7.2:-87132647 None:intergenic
GAGAGCAAGAAGCATGTGAG+GGG 0.602424 7.2:-87132742 None:intergenic
AGTGGTTGATGACGGTGGTG+AGG 0.625162 7.2:-87132642 None:intergenic
GGAGGAATTTGGGCTCCGGT+GGG 0.630361 7.2:-87132682 None:intergenic
TGGGTGGTTGTGGAAAGTGG+TGG 0.636395 7.2:-87132603 None:intergenic
AGAGTGAGAATTCATCAACA+TGG 0.636406 7.2:-87132805 None:intergenic
CATCTAGGGCATGACCACCT+AGG 0.648371 7.2:-87132470 None:intergenic
CACGGCGGTGGAAGTTACGG+TGG 0.670619 7.2:-87132569 None:intergenic
AACCATGCAGCAAACCTAGG+TGG 0.685477 7.2:+87132456 MS.gene043241:CDS
GAGGTTGATATTCAATGACA+TGG 0.686425 7.2:-87132623 None:intergenic
AATTTGCTGAGAAAGTTGGG+TGG 0.726025 7.2:+87132889 MS.gene043241:CDS
AGGTTGATATTCAATGACAT+GGG 0.727348 7.2:-87132622 None:intergenic
TTGATATTCAATGACATGGG+TGG 0.731584 7.2:-87132619 None:intergenic
GTGGCTCTTCAGGTTCACGG+CGG 0.764896 7.2:-87132584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATGAGAATATTAATGA+TGG + chr7.2:87133038-87133057 MS.gene043241:CDS 20.0%
!!! TAATATTCTCATTGTTGTTA+AGG - chr7.2:87133034-87133053 None:intergenic 20.0%
!! TTTGAAAAAGGTGAGATTTT+TGG - chr7.2:87132336-87132355 None:intergenic 25.0%
!!! AAAATCTCACCTTTTTCAAA+TGG + chr7.2:87132336-87132355 MS.gene043241:CDS 25.0%
AATCATTATCAGAATGAAGG+TGG + chr7.2:87133131-87133150 MS.gene043241:CDS 30.0%
CACAATCATTATCAGAATGA+AGG + chr7.2:87133128-87133147 MS.gene043241:CDS 30.0%
TGTTGTTGAGGTTGTAAATA+TGG - chr7.2:87132241-87132260 None:intergenic 30.0%
TTGAGAACACCATTTGAAAA+AGG - chr7.2:87132348-87132367 None:intergenic 30.0%
TTGTTCTGGTGATTTAGTTA+AGG - chr7.2:87132265-87132284 None:intergenic 30.0%
! TTTAGTTAAGGTTGTTGTTG+AGG - chr7.2:87132253-87132272 None:intergenic 30.0%
!! AGGTTGATATTCAATGACAT+GGG - chr7.2:87132625-87132644 None:intergenic 30.0%
!! CATGAGTTTTGTAATGAGAT+TGG + chr7.2:87132942-87132961 MS.gene043241:CDS 30.0%
!! TGAAATTTGCTGAGAAAGTT+GGG + chr7.2:87132886-87132905 MS.gene043241:CDS 30.0%
!!! GTTTTTGAGACATTCTTTGT+AGG - chr7.2:87132439-87132458 None:intergenic 30.0%
AGAGTGAGAATTCATCAACA+TGG - chr7.2:87132808-87132827 None:intergenic 35.0%
ATCGTAGTGTTCTTAAGGTT+TGG + chr7.2:87132970-87132989 MS.gene043241:CDS 35.0%
CACAAGAATGTTGAGATTCA+TGG + chr7.2:87133098-87133117 MS.gene043241:CDS 35.0%
GAGAATTCATCAACATGGTT+TGG - chr7.2:87132803-87132822 None:intergenic 35.0%
GAGACATTCTTTGTAGGTTA+TGG - chr7.2:87132433-87132452 None:intergenic 35.0%
GTTGAGGTTGTAAATATGGT+TGG - chr7.2:87132237-87132256 None:intergenic 35.0%
TGTTGATCGTAGTGTTCTTA+AGG + chr7.2:87132965-87132984 MS.gene043241:CDS 35.0%
TTGATATTCAATGACATGGG+TGG - chr7.2:87132622-87132641 None:intergenic 35.0%
TTGTGTTCTTCATCTTCAAG+AGG - chr7.2:87133083-87133102 None:intergenic 35.0%
! GTTGTTAAGGTTTTCTCGTT+TGG - chr7.2:87133021-87133040 None:intergenic 35.0%
! TCAGTTTCATGTTGTTGTTC+TGG - chr7.2:87132279-87132298 None:intergenic 35.0%
!! ACAATTCTAGAAAGCGTTTC+AGG + chr7.2:87132829-87132848 MS.gene043241:CDS 35.0%
!! ACATTTTAAGGATGTTGGGT+CGG - chr7.2:87132535-87132554 None:intergenic 35.0%
!! CAGCACATTTTAAGGATGTT+GGG - chr7.2:87132539-87132558 None:intergenic 35.0%
!! CTGAAATTTGCTGAGAAAGT+TGG + chr7.2:87132885-87132904 MS.gene043241:CDS 35.0%
!! GAGGTTGATATTCAATGACA+TGG - chr7.2:87132626-87132645 None:intergenic 35.0%
!! TTCATCAACATGGTTTGGTT+TGG - chr7.2:87132798-87132817 None:intergenic 35.0%
!!! ATTTTTGGTGTTGTTGAGGT+TGG - chr7.2:87132321-87132340 None:intergenic 35.0%
!!! TGAGATTTTTGGTGTTGTTG+AGG - chr7.2:87132325-87132344 None:intergenic 35.0%
!!! TTTTTGGTGTTGTTGAGGTT+GGG - chr7.2:87132320-87132339 None:intergenic 35.0%
AAAAACCATGCAGCAAACCT+AGG + chr7.2:87132453-87132472 MS.gene043241:CDS 40.0%
GAATTCACCACAACCATCTA+GGG - chr7.2:87132487-87132506 None:intergenic 40.0%
TGAATTCACCACAACCATCT+AGG - chr7.2:87132488-87132507 None:intergenic 40.0%
! TGAGGTTGGGAATTTTGTTG+TGG - chr7.2:87132307-87132326 None:intergenic 40.0%
! TGTAGGTTATGGTGAGTTGA+TGG - chr7.2:87132422-87132441 None:intergenic 40.0%
!! AATTTGCTGAGAAAGTTGGG+TGG + chr7.2:87132889-87132908 MS.gene043241:CDS 40.0%
!! ATGGTTGGTGCTATTGATGT+TGG - chr7.2:87132222-87132241 None:intergenic 40.0%
!! GAGGTTGGGAATTTTGTTGT+GGG - chr7.2:87132306-87132325 None:intergenic 40.0%
!! GCAGCACATTTTAAGGATGT+TGG - chr7.2:87132540-87132559 None:intergenic 40.0%
!! TATGGTGAGTTGATGGTTGT+TGG - chr7.2:87132415-87132434 None:intergenic 40.0%
!! TCCTTAAAATGTGCTGCTTG+TGG + chr7.2:87132543-87132562 MS.gene043241:CDS 40.0%
CAGAATGAAGGTGGAGTTGT+TGG + chr7.2:87133140-87133159 MS.gene043241:CDS 45.0%
GGAGTAACTGTTCGTGCTAA+TGG + chr7.2:87133161-87133180 MS.gene043241:CDS 45.0%
TGTTGTTGTGGTGGTTGAAG+TGG - chr7.2:87132392-87132411 None:intergenic 45.0%
TTCAATGACATGGGTGGTTG+TGG - chr7.2:87132616-87132635 None:intergenic 45.0%
TTTAAGGATGTTGGGTCGGT+TGG - chr7.2:87132531-87132550 None:intergenic 45.0%
! AGAGAGCAAGAAGCATGTGA+GGG - chr7.2:87132746-87132765 None:intergenic 45.0%
! GCCACAAGCAGCACATTTTA+AGG - chr7.2:87132547-87132566 None:intergenic 45.0%
!! ATTGATGTTGGTGGTGGTGT+TGG - chr7.2:87132210-87132229 None:intergenic 45.0%
!! GATGGTTGTTGGTGTTGTTG+TGG - chr7.2:87132404-87132423 None:intergenic 45.0%
!! GTTGGTGCTATTGATGTTGG+TGG - chr7.2:87132219-87132238 None:intergenic 45.0%
!! TTTGGAGCTGCAACGTTTTC+CGG - chr7.2:87132780-87132799 None:intergenic 45.0%
AACCATGCAGCAAACCTAGG+TGG + chr7.2:87132456-87132475 MS.gene043241:CDS 50.0%
ACATGGGTGGTTGTGGAAAG+TGG - chr7.2:87132609-87132628 None:intergenic 50.0%
GGGTAGTAAGAGGAGGAGAT+CGG - chr7.2:87132717-87132736 None:intergenic 50.0%
TAGTAAGAGGAGGAGATCGG+TGG - chr7.2:87132714-87132733 None:intergenic 50.0%
TGTTGTGGTGGTTGAAGTGG+TGG - chr7.2:87132389-87132408 None:intergenic 50.0%
! AGCTGCAACGTTTTCCGGTA+AGG - chr7.2:87132775-87132794 None:intergenic 50.0%
! GAGAGAGCAAGAAGCATGTG+AGG - chr7.2:87132747-87132766 None:intergenic 50.0%
! GAGAGCAAGAAGCATGTGAG+GGG - chr7.2:87132745-87132764 None:intergenic 50.0%
! GTGGTGGTGAGGAGGAATTT+GGG - chr7.2:87132695-87132714 None:intergenic 50.0%
! TGCAACGTTTTCCGGTAAGG+CGG - chr7.2:87132772-87132791 None:intergenic 50.0%
! TGGTGTTGGAGTTGGGGTTA+AGG - chr7.2:87132190-87132209 None:intergenic 50.0%
!! GGTGCTATTGATGTTGGTGG+TGG - chr7.2:87132216-87132235 None:intergenic 50.0%
!! GGTTGTTGGTGTTGTTGTGG+TGG - chr7.2:87132401-87132420 None:intergenic 50.0%
!! GTGGTGGAAGTGGTTGATGA+CGG - chr7.2:87132653-87132672 None:intergenic 50.0%
!! GTGGTGTTGGTGTTGGAGTT+GGG - chr7.2:87132197-87132216 None:intergenic 50.0%
!! TGGTGTTGGTGTTGGAGTTG+GGG - chr7.2:87132196-87132215 None:intergenic 50.0%
ATTTGGGCTCCGGTGGGAAA+AGG - chr7.2:87132679-87132698 None:intergenic 55.0%
CTAGGTGGTCATGCCCTAGA+TGG + chr7.2:87132471-87132490 MS.gene043241:CDS 55.0%
GGTCATGCCCTAGATGGTTG+TGG + chr7.2:87132477-87132496 MS.gene043241:CDS 55.0%
GTGAGGAGGAATTTGGGCTC+CGG - chr7.2:87132689-87132708 None:intergenic 55.0%
GTGGAAAGTGGTGGCTCTTC+AGG - chr7.2:87132597-87132616 None:intergenic 55.0%
GTTCACGGCGGTGGAAGTTA+CGG - chr7.2:87132575-87132594 None:intergenic 55.0%
TAAGAGGAGGAGATCGGTGG+TGG - chr7.2:87132711-87132730 None:intergenic 55.0%
TGGGTGGTTGTGGAAAGTGG+TGG - chr7.2:87132606-87132625 None:intergenic 55.0%
TGTGGTGGTTGAAGTGGTGG+TGG - chr7.2:87132386-87132405 None:intergenic 55.0%
TTTGGGCTCCGGTGGGAAAA+GGG - chr7.2:87132678-87132697 None:intergenic 55.0%
! AACGTTTTCCGGTAAGGCGG+CGG - chr7.2:87132769-87132788 None:intergenic 55.0%
! AGCAAGAAGCATGTGAGGGG+CGG - chr7.2:87132742-87132761 None:intergenic 55.0%
! CATCTAGGGCATGACCACCT+AGG - chr7.2:87132473-87132492 None:intergenic 55.0%
! GGTGGTGGTGAGGAGGAATT+TGG - chr7.2:87132696-87132715 None:intergenic 55.0%
! GTGGTGGCTCTTCAGGTTCA+CGG - chr7.2:87132590-87132609 None:intergenic 55.0%
!! AGTGGTTGATGACGGTGGTG+AGG - chr7.2:87132645-87132664 None:intergenic 55.0%
!! GAAAAGGGTGGTGGTGGAAG+TGG - chr7.2:87132663-87132682 None:intergenic 55.0%
!! GACCACCTAGGTTTGCTGCA+TGG - chr7.2:87132461-87132480 None:intergenic 55.0%
!! GGTGGTGTTGGTGTTGGAGT+TGG - chr7.2:87132198-87132217 None:intergenic 55.0%
!! GTGGAAGTGGTTGATGACGG+TGG - chr7.2:87132650-87132669 None:intergenic 55.0%
!! GTTGGTGGTGGTGTTGGTGT+TGG - chr7.2:87132204-87132223 None:intergenic 55.0%
AGGAGGAATTTGGGCTCCGG+TGG - chr7.2:87132686-87132705 None:intergenic 60.0%
GGAGGAATTTGGGCTCCGGT+GGG - chr7.2:87132685-87132704 None:intergenic 60.0%
! AAGAAGCATGTGAGGGGCGG+AGG - chr7.2:87132739-87132758 None:intergenic 60.0%
! AGAAGCATGTGAGGGGCGGA+GGG - chr7.2:87132738-87132757 None:intergenic 60.0%
! CACCACCACCCTTTTCCCAC+CGG + chr7.2:87132667-87132686 MS.gene043241:CDS 60.0%
! GTGGCTCTTCAGGTTCACGG+CGG - chr7.2:87132587-87132606 None:intergenic 60.0%
!! GGGTCGGTTGGTGTTGCTGT+GGG - chr7.2:87132519-87132538 None:intergenic 60.0%
!! GGTGGTTGAAGTGGTGGTGG+TGG - chr7.2:87132383-87132402 None:intergenic 60.0%
!! GGTTGAAGTGGTGGTGGTGG+TGG - chr7.2:87132380-87132399 None:intergenic 60.0%
!! TGAAGTGGTGGTGGTGGTGG+TGG - chr7.2:87132377-87132396 None:intergenic 60.0%
!! TGGGTCGGTTGGTGTTGCTG+TGG - chr7.2:87132520-87132539 None:intergenic 60.0%
AGGGGCGGAGGGGTAGTAAG+AGG - chr7.2:87132727-87132746 None:intergenic 65.0%
CACGGCGGTGGAAGTTACGG+TGG - chr7.2:87132572-87132591 None:intergenic 65.0%
CTCCGGTGGGAAAAGGGTGG+TGG - chr7.2:87132672-87132691 None:intergenic 65.0%
GAAGCATGTGAGGGGCGGAG+GGG - chr7.2:87132737-87132756 None:intergenic 65.0%
GGCGGAGGGGTAGTAAGAGG+AGG - chr7.2:87132724-87132743 None:intergenic 65.0%
TGCTCTCTCCGCCGCCTTAC+CGG + chr7.2:87132758-87132777 MS.gene043241:CDS 65.0%
! CGGTGGGAAAAGGGTGGTGG+TGG - chr7.2:87132669-87132688 None:intergenic 65.0%
! GCTCTTCAGGTTCACGGCGG+TGG - chr7.2:87132584-87132603 None:intergenic 65.0%
! GGAGATCGGTGGTGGTGAGG+AGG - chr7.2:87132703-87132722 None:intergenic 65.0%
! GGAGGAGATCGGTGGTGGTG+AGG - chr7.2:87132706-87132725 None:intergenic 65.0%
GGGCTCCGGTGGGAAAAGGG+TGG - chr7.2:87132675-87132694 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 87132177 87133202 87132177 ID=MS.gene043241
chr7.2 mRNA 87132177 87133202 87132177 ID=MS.gene043241.t1;Parent=MS.gene043241
chr7.2 exon 87132177 87133202 87132177 ID=MS.gene043241.t1.exon1;Parent=MS.gene043241.t1
chr7.2 CDS 87132177 87133202 87132177 ID=cds.MS.gene043241.t1;Parent=MS.gene043241.t1
Gene Sequence

>MS.gene043241

ATGGACATAACCTTAACCCCAACTCCAACACCAACACCACCACCAACATCAATAGCACCAACCATATTTACAACCTCAACAACAACCTTAACTAAATCACCAGAACAACAACATGAAACTGAAACACCCACAACAAAATTCCCAACCTCAACAACACCAAAAATCTCACCTTTTTCAAATGGTGTTCTCAAACGTTTCCACCACCACCACCACCACTTCAACCACCACAACAACACCAACAACCATCAACTCACCATAACCTACAAAGAATGTCTCAAAAACCATGCAGCAAACCTAGGTGGTCATGCCCTAGATGGTTGTGGTGAATTCATGACATCACCCACAGCAACACCAACCGACCCAACATCCTTAAAATGTGCTGCTTGTGGCTGCCACCGTAACTTCCACCGCCGTGAACCTGAAGAGCCACCACTTTCCACAACCACCCATGTCATTGAATATCAACCTCACCACCGTCATCAACCACTTCCACCACCACCCTTTTCCCACCGGAGCCCAAATTCCTCCTCACCACCACCGATCTCCTCCTCTTACTACCCCTCCGCCCCTCACATGCTTCTTGCTCTCTCCGCCGCCTTACCGGAAAACGTTGCAGCTCCAAACCAAACCATGTTGATGAATTCTCACTCTAACAATTCTAGAAAGCGTTTCAGGACAAAGTTTACACAAGATCAGAAAGATAAGATGCTGAAATTTGCTGAGAAAGTTGGGTGGAAGATGCAGAAAAAAGATGATGAATTTGTTCATGAGTTTTGTAATGAGATTGGTGTTGATCGTAGTGTTCTTAAGGTTTGGATGCATAACAACAAGAACACTTTAGCCAAACGAGAAAACCTTAACAACAATGAGAATATTAATGATGGTGTTAAGAGTTTTCAGCTACCTCTTGAAGATGAAGAACACAAGAATGTTGAGATTCATGGTCTTAATCACAATCATTATCAGAATGAAGGTGGAGTTGTTGGAGTAACTGTTCGTGCTAATGGTTCATCATCATCTTCTTAA
Protein sequence

>MS.gene043241.t1

MDITLTPTPTPTPPPTSIAPTIFTTSTTTLTKSPEQQHETETPTTKFPTSTTPKISPFSNGVLKRFHHHHHHFNHHNNTNNHQLTITYKECLKNHAANLGGHALDGCGEFMTSPTATPTDPTSLKCAACGCHRNFHRREPEEPPLSTTTHVIEYQPHHRHQPLPPPPFSHRSPNSSSPPPISSSYYPSAPHMLLALSAALPENVAAPNQTMLMNSHSNNSRKRFRTKFTQDQKDKMLKFAEKVGWKMQKKDDEFVHEFCNEIGVDRSVLKVWMHNNKNTLAKRENLNNNENINDGVKSFQLPLEDEEHKNVEIHGLNHNHYQNEGGVVGVTVRANGSSSSS