Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43476.t1 | XP_013458710.1 | 94.6 | 276 | 9 | 1 | 6 | 275 | 90 | 365 | 4.20E-53 | 218.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43476.t1 | O64722 | 63.3 | 240 | 58 | 1 | 17 | 256 | 75 | 284 | 8.5e-31 | 135.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43476.t1 | A0A072USW0 | 94.6 | 276 | 9 | 1 | 6 | 275 | 90 | 365 | 3.0e-53 | 218.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene43476.t1 | TF | zf-HD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43476 | MS.gene79601 | PPI |
| MS.gene012789 | MS.gene43476 | PPI |
| MS.gene042050 | MS.gene43476 | PPI |
| MS.gene021696 | MS.gene43476 | PPI |
| MS.gene43476 | MS.gene95053 | PPI |
| MS.gene043241 | MS.gene43476 | PPI |
| MS.gene43476 | MS.gene012789 | PPI |
| MS.gene91521 | MS.gene43476 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43476.t1 | MTR_4g134580 | 93.950 | 281 | 11 | 2 | 1 | 275 | 85 | 365 | 0.0 | 546 |
| MS.gene43476.t1 | MTR_1g077020 | 44.017 | 234 | 81 | 4 | 25 | 258 | 5 | 188 | 1.19e-62 | 196 |
| MS.gene43476.t1 | MTR_5g020510 | 42.194 | 237 | 106 | 5 | 22 | 258 | 92 | 297 | 2.27e-55 | 181 |
| MS.gene43476.t1 | MTR_3g100650 | 41.772 | 237 | 104 | 5 | 20 | 256 | 71 | 273 | 6.04e-53 | 174 |
| MS.gene43476.t1 | MTR_5g065440 | 42.149 | 242 | 98 | 7 | 27 | 256 | 56 | 267 | 8.67e-51 | 168 |
| MS.gene43476.t1 | MTR_7g010300 | 38.889 | 234 | 106 | 7 | 26 | 257 | 85 | 283 | 3.44e-44 | 153 |
| MS.gene43476.t1 | MTR_2g076780 | 38.494 | 239 | 113 | 8 | 21 | 256 | 29 | 236 | 1.46e-42 | 145 |
| MS.gene43476.t1 | MTR_8g069080 | 33.610 | 241 | 127 | 6 | 14 | 251 | 52 | 262 | 1.89e-34 | 125 |
| MS.gene43476.t1 | MTR_5g032600 | 73.016 | 63 | 17 | 0 | 194 | 256 | 209 | 271 | 1.17e-25 | 102 |
| MS.gene43476.t1 | MTR_6g012280 | 52.874 | 87 | 40 | 1 | 183 | 269 | 211 | 296 | 3.77e-25 | 102 |
| MS.gene43476.t1 | MTR_8g467340 | 58.824 | 68 | 28 | 0 | 194 | 261 | 271 | 338 | 1.24e-22 | 96.3 |
| MS.gene43476.t1 | MTR_8g467340 | 63.934 | 61 | 20 | 1 | 22 | 80 | 57 | 117 | 2.19e-18 | 84.3 |
| MS.gene43476.t1 | MTR_3g039810 | 56.757 | 74 | 30 | 1 | 12 | 83 | 1 | 74 | 1.97e-20 | 83.6 |
| MS.gene43476.t1 | MTR_8g069380 | 58.730 | 63 | 26 | 0 | 194 | 256 | 52 | 114 | 1.49e-19 | 82.0 |
| MS.gene43476.t1 | MTR_6g073013 | 55.000 | 60 | 26 | 1 | 194 | 252 | 101 | 160 | 8.66e-19 | 82.0 |
| MS.gene43476.t1 | MTR_6g073013 | 60.000 | 50 | 19 | 1 | 29 | 77 | 19 | 68 | 8.76e-15 | 71.2 |
| MS.gene43476.t1 | MTR_8g051480 | 59.677 | 62 | 24 | 1 | 195 | 256 | 68 | 128 | 4.44e-18 | 78.6 |
| MS.gene43476.t1 | MTR_6g012220 | 61.538 | 52 | 16 | 1 | 26 | 77 | 18 | 65 | 2.53e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43476.t1 | AT2G02540 | 47.581 | 248 | 84 | 5 | 17 | 256 | 75 | 284 | 5.30e-69 | 216 |
| MS.gene43476.t1 | AT2G02540 | 47.581 | 248 | 84 | 5 | 17 | 256 | 75 | 284 | 5.30e-69 | 216 |
| MS.gene43476.t1 | AT1G14440 | 47.436 | 234 | 80 | 5 | 26 | 256 | 87 | 280 | 1.06e-62 | 200 |
| MS.gene43476.t1 | AT1G14440 | 47.436 | 234 | 80 | 5 | 26 | 256 | 87 | 280 | 1.06e-62 | 200 |
| MS.gene43476.t1 | AT2G18350 | 39.464 | 261 | 88 | 7 | 10 | 258 | 60 | 262 | 5.16e-49 | 163 |
| MS.gene43476.t1 | AT1G69600 | 38.075 | 239 | 96 | 7 | 27 | 259 | 29 | 221 | 2.34e-45 | 153 |
| MS.gene43476.t1 | AT5G60480 | 32.751 | 229 | 95 | 5 | 25 | 251 | 33 | 204 | 7.32e-36 | 128 |
| MS.gene43476.t1 | AT3G50890 | 31.004 | 229 | 114 | 4 | 27 | 255 | 58 | 242 | 1.27e-28 | 110 |
| MS.gene43476.t1 | AT1G75240 | 78.571 | 56 | 12 | 0 | 26 | 81 | 73 | 128 | 1.48e-26 | 105 |
| MS.gene43476.t1 | AT4G24660 | 64.516 | 62 | 22 | 0 | 195 | 256 | 158 | 219 | 5.36e-24 | 97.1 |
| MS.gene43476.t1 | AT4G24660 | 72.222 | 54 | 15 | 0 | 27 | 80 | 47 | 100 | 3.67e-23 | 94.7 |
| MS.gene43476.t1 | AT5G65410 | 60.317 | 63 | 25 | 0 | 193 | 255 | 190 | 252 | 3.45e-23 | 96.3 |
| MS.gene43476.t1 | AT5G65410 | 71.154 | 52 | 15 | 0 | 28 | 79 | 74 | 125 | 2.79e-21 | 90.9 |
| MS.gene43476.t1 | AT4G24660 | 72.222 | 54 | 15 | 0 | 27 | 80 | 47 | 100 | 3.96e-23 | 95.1 |
| MS.gene43476.t1 | AT4G24660 | 56.164 | 73 | 32 | 0 | 195 | 267 | 158 | 230 | 4.09e-23 | 95.1 |
| MS.gene43476.t1 | AT5G39760 | 51.220 | 82 | 38 | 1 | 194 | 273 | 200 | 281 | 8.95e-22 | 93.2 |
| MS.gene43476.t1 | AT1G74660 | 66.667 | 57 | 19 | 0 | 27 | 83 | 37 | 93 | 2.61e-21 | 86.3 |
| MS.gene43476.t1 | AT5G15210 | 63.158 | 57 | 21 | 0 | 194 | 250 | 179 | 235 | 2.85e-21 | 90.9 |
| MS.gene43476.t1 | AT5G15210 | 61.818 | 55 | 19 | 1 | 26 | 78 | 53 | 107 | 2.26e-16 | 77.4 |
| MS.gene43476.t1 | AT1G74660 | 66.667 | 57 | 19 | 0 | 27 | 83 | 37 | 93 | 3.22e-21 | 86.3 |
| MS.gene43476.t1 | AT3G28920 | 60.000 | 60 | 24 | 0 | 194 | 253 | 192 | 251 | 1.63e-20 | 89.4 |
| MS.gene43476.t1 | AT3G28917 | 65.517 | 58 | 19 | 1 | 27 | 83 | 31 | 88 | 3.47e-20 | 83.6 |
| MS.gene43476.t1 | AT1G18835 | 63.158 | 57 | 18 | 1 | 27 | 83 | 24 | 77 | 5.91e-17 | 74.3 |
| MS.gene43476.t1 | AT5G42780 | 59.259 | 54 | 20 | 1 | 29 | 82 | 64 | 115 | 2.28e-13 | 68.6 |
| MS.gene43476.t1 | AT5G42780 | 45.763 | 59 | 32 | 0 | 195 | 253 | 180 | 238 | 7.85e-13 | 67.0 |
Find 62 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATCAGGCTCTTGGTCT+TGG | 0.311106 | 8.4:-277025 | MS.gene43476:CDS |
| CTCTTCTTGTTCATCAGATT+CGG | 0.338219 | 8.4:+276862 | None:intergenic |
| AATGGTTCCTTGTTCACCAC+TGG | 0.354032 | 8.4:+277210 | None:intergenic |
| GTTGCTGCTGATGCTGTATT+AGG | 0.369444 | 8.4:+276980 | None:intergenic |
| CCTCTTCCTGATCAGGCTCT+TGG | 0.375629 | 8.4:-277031 | MS.gene43476:CDS |
| CATGTTACCTCTTCCTGATC+AGG | 0.387160 | 8.4:-277038 | MS.gene43476:CDS |
| CCTTCAACTTCAACTTCAAC+AGG | 0.390687 | 8.4:-277087 | MS.gene43476:CDS |
| CCTGTTGAAGTTGAAGTTGA+AGG | 0.398274 | 8.4:+277087 | None:intergenic |
| AGAGCAGTTGAGTGCTTCAA+TGG | 0.440838 | 8.4:+277192 | None:intergenic |
| AAAGAAGAGTGCTCAAGGTT+TGG | 0.446033 | 8.4:-276655 | MS.gene43476:CDS |
| GAAGGTATGTTGTAGTTGAA+TGG | 0.452483 | 8.4:+276884 | None:intergenic |
| CCTGATCCTCAGTCTCACCT+TGG | 0.455452 | 8.4:+277131 | None:intergenic |
| CCAAGACCAAGAGCCTGATC+AGG | 0.460517 | 8.4:+277025 | None:intergenic |
| CCAAGGTGAGACTGAGGATC+AGG | 0.460530 | 8.4:-277131 | MS.gene43476:CDS |
| AACTGATGACGATTTCTTGT+AGG | 0.461489 | 8.4:+277315 | None:intergenic |
| AGCAGGTAGTGATGAAGAAA+AGG | 0.463951 | 8.4:-276802 | MS.gene43476:CDS |
| TAGTGATGAAGAAAAGGTTC+AGG | 0.467781 | 8.4:-276796 | MS.gene43476:CDS |
| CAACAGTTCTGCCAAGAGAT+TGG | 0.479137 | 8.4:-276683 | MS.gene43476:CDS |
| TAGGAGTAGAGTGGTGGTGT+TGG | 0.483759 | 8.4:+276999 | None:intergenic |
| AATACAGCATCAGCAGCAAC+AGG | 0.487107 | 8.4:-276977 | MS.gene43476:CDS |
| AAGAATCATGCAGCTGCAAT+GGG | 0.493612 | 8.4:-277268 | MS.gene43476:CDS |
| ATGGTTCCTTGTTCACCACT+GGG | 0.498200 | 8.4:+277211 | None:intergenic |
| AAAGAATCATGCAGCTGCAA+TGG | 0.500219 | 8.4:-277269 | MS.gene43476:CDS |
| GGCAGCACCACCACAGCATG+AGG | 0.512800 | 8.4:-277066 | MS.gene43476:CDS |
| CAAGCAGCAGCTGTTAGTAC+TGG | 0.515000 | 8.4:-277364 | MS.gene43476:CDS |
| AGAGCTGTAGCGCCACCTCA+TGG | 0.521678 | 8.4:-276926 | MS.gene43476:CDS |
| GGTGGCGCTACAGCTCTAGA+AGG | 0.538474 | 8.4:+276932 | None:intergenic |
| CGAATCTGATGAACAAGAAG+AGG | 0.550515 | 8.4:-276861 | MS.gene43476:CDS |
| GAAGTTTCTGTGACAATGGC+AGG | 0.555632 | 8.4:+277168 | None:intergenic |
| CCAAGAGCCTGATCAGGAAG+AGG | 0.556475 | 8.4:+277031 | None:intergenic |
| TCTTGTTCATCAGATTCGGA+AGG | 0.560538 | 8.4:+276866 | None:intergenic |
| CTAACAGCTGCTGCTTGCAT+AGG | 0.566961 | 8.4:+277370 | None:intergenic |
| AAAATTCACACAGGAACAGA+AGG | 0.568057 | 8.4:-276771 | MS.gene43476:CDS |
| TTCATGCCCAGTGGTGAACA+AGG | 0.570431 | 8.4:-277217 | MS.gene43476:CDS |
| TGTGGAAGTTTCTGTGACAA+TGG | 0.570726 | 8.4:+277164 | None:intergenic |
| CAAGAAATCGTCATCAGTTG+TGG | 0.580092 | 8.4:-277311 | MS.gene43476:CDS |
| GATGAACAAGAAGAGGCAGC+AGG | 0.580135 | 8.4:-276854 | MS.gene43476:CDS |
| TGATGACGATTTCTTGTAGG+AGG | 0.584121 | 8.4:+277318 | None:intergenic |
| AATCATGCAGCTGCAATGGG+AGG | 0.592565 | 8.4:-277265 | MS.gene43476:CDS |
| GTAGCGCCACCTCATGGACA+TGG | 0.593213 | 8.4:-276920 | MS.gene43476:CDS |
| TGAATTTCCTCATGCTGTGG+TGG | 0.602127 | 8.4:+277059 | None:intergenic |
| TGTGAAAAGAAGAGTGCTCA+AGG | 0.602235 | 8.4:-276660 | MS.gene43476:CDS |
| ATCATGCAGCTGCAATGGGA+GGG | 0.602761 | 8.4:-277264 | MS.gene43476:CDS |
| ATGGAAATTTCAGAAGCAAG+AGG | 0.613533 | 8.4:-276717 | MS.gene43476:CDS |
| GGGAATGCCACAGATGGCTG+TGG | 0.614228 | 8.4:-277244 | MS.gene43476:CDS |
| TGAAGTTGAAGGCTGAGTGA+TGG | 0.622721 | 8.4:+277098 | None:intergenic |
| AGTTGAAGGCTGAGTGATGG+TGG | 0.623553 | 8.4:+277101 | None:intergenic |
| ATGGGAGGGAATGCCACAGA+TGG | 0.625053 | 8.4:-277250 | MS.gene43476:CDS |
| AGAAGTCCAAGGTGAGACTG+AGG | 0.639644 | 8.4:-277137 | MS.gene43476:CDS |
| AGCAGCTGTTAGTACTGGTG+TGG | 0.641970 | 8.4:-277359 | MS.gene43476:CDS |
| TTCCACAGAAAAGAAGTCCA+AGG | 0.650236 | 8.4:-277148 | MS.gene43476:CDS |
| TCAGAAGCAAGAGGAATCTG+TGG | 0.650938 | 8.4:-276708 | MS.gene43476:CDS |
| AGTTGAATGGCATGATGATG+TGG | 0.657862 | 8.4:+276897 | None:intergenic |
| ATGTGGCCATGTCCATGAGG+TGG | 0.659218 | 8.4:+276914 | None:intergenic |
| ACATGAATTTCCTCATGCTG+TGG | 0.665457 | 8.4:+277056 | None:intergenic |
| AATCGTCATCAGTTGTGGTG+AGG | 0.674142 | 8.4:-277306 | MS.gene43476:CDS |
| CTGTATTAGGAGTAGAGTGG+TGG | 0.678813 | 8.4:+276993 | None:intergenic |
| TGTGGTGAGTTCATGCCCAG+TGG | 0.682320 | 8.4:-277226 | MS.gene43476:CDS |
| GAACTCACCACAGCCATCTG+TGG | 0.688684 | 8.4:+277237 | None:intergenic |
| GTTCAGGACAAAATTCACAC+AGG | 0.704613 | 8.4:-276780 | MS.gene43476:CDS |
| ATGCTGTATTAGGAGTAGAG+TGG | 0.716681 | 8.4:+276990 | None:intergenic |
| ATGATGTGGCCATGTCCATG+AGG | 0.730801 | 8.4:+276911 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATGTTGAAGTTGTTTTT+TGG | + | chr8.4:277325-277344 | None:intergenic | 25.0% |
| ! | TTCAATTTTGCTGAGAAAGT+TGG | - | chr8.4:277189-277208 | MS.gene43476:CDS | 30.0% |
| AAAATTCACACAGGAACAGA+AGG | - | chr8.4:277158-277177 | MS.gene43476:CDS | 35.0% | |
| ATGGAAATTTCAGAAGCAAG+AGG | - | chr8.4:277212-277231 | MS.gene43476:CDS | 35.0% | |
| CTCTTCTTGTTCATCAGATT+CGG | + | chr8.4:277070-277089 | None:intergenic | 35.0% | |
| TAGTGATGAAGAAAAGGTTC+AGG | - | chr8.4:277133-277152 | MS.gene43476:CDS | 35.0% | |
| ! | AACTGATGACGATTTCTTGT+AGG | + | chr8.4:276617-276636 | None:intergenic | 35.0% |
| ! | ATTTTGCTGAGAAAGTTGGA+TGG | - | chr8.4:277193-277212 | MS.gene43476:CDS | 35.0% |
| ! | GAAGGTATGTTGTAGTTGAA+TGG | + | chr8.4:277048-277067 | None:intergenic | 35.0% |
| ! | TTCTTTTCACACCAATCTCT+TGG | + | chr8.4:277260-277279 | None:intergenic | 35.0% |
| AAAGAATCATGCAGCTGCAA+TGG | - | chr8.4:276660-276679 | MS.gene43476:CDS | 40.0% | |
| AAGAATCATGCAGCTGCAAT+GGG | - | chr8.4:276661-276680 | MS.gene43476:CDS | 40.0% | |
| ACATGAATTTCCTCATGCTG+TGG | + | chr8.4:276876-276895 | None:intergenic | 40.0% | |
| AGCAGGTAGTGATGAAGAAA+AGG | - | chr8.4:277127-277146 | MS.gene43476:CDS | 40.0% | |
| ATGCTGTATTAGGAGTAGAG+TGG | + | chr8.4:276942-276961 | None:intergenic | 40.0% | |
| CAAGAAATCGTCATCAGTTG+TGG | - | chr8.4:276618-276637 | MS.gene43476:CDS | 40.0% | |
| CCTGTTGAAGTTGAAGTTGA+AGG | + | chr8.4:276845-276864 | None:intergenic | 40.0% | |
| CCTTCAACTTCAACTTCAAC+AGG | - | chr8.4:276842-276861 | MS.gene43476:CDS | 40.0% | |
| CGAATCTGATGAACAAGAAG+AGG | - | chr8.4:277068-277087 | MS.gene43476:CDS | 40.0% | |
| GTTCAGGACAAAATTCACAC+AGG | - | chr8.4:277149-277168 | MS.gene43476:CDS | 40.0% | |
| TCTTGTTCATCAGATTCGGA+AGG | + | chr8.4:277066-277085 | None:intergenic | 40.0% | |
| TGTGGAAGTTTCTGTGACAA+TGG | + | chr8.4:276768-276787 | None:intergenic | 40.0% | |
| TTCCACAGAAAAGAAGTCCA+AGG | - | chr8.4:276781-276800 | MS.gene43476:CDS | 40.0% | |
| ! | AGTTGAATGGCATGATGATG+TGG | + | chr8.4:277035-277054 | None:intergenic | 40.0% |
| ! | TGATGACGATTTCTTGTAGG+AGG | + | chr8.4:276614-276633 | None:intergenic | 40.0% |
| !! | AAAGAAGAGTGCTCAAGGTT+TGG | - | chr8.4:277274-277293 | MS.gene43476:CDS | 40.0% |
| !! | TGTGAAAAGAAGAGTGCTCA+AGG | - | chr8.4:277269-277288 | MS.gene43476:CDS | 40.0% |
| AATACAGCATCAGCAGCAAC+AGG | - | chr8.4:276952-276971 | MS.gene43476:CDS | 45.0% | |
| AATCGTCATCAGTTGTGGTG+AGG | - | chr8.4:276623-276642 | MS.gene43476:CDS | 45.0% | |
| AATGGTTCCTTGTTCACCAC+TGG | + | chr8.4:276722-276741 | None:intergenic | 45.0% | |
| AGAGCAGTTGAGTGCTTCAA+TGG | + | chr8.4:276740-276759 | None:intergenic | 45.0% | |
| ATGGTTCCTTGTTCACCACT+GGG | + | chr8.4:276721-276740 | None:intergenic | 45.0% | |
| CAACAGTTCTGCCAAGAGAT+TGG | - | chr8.4:277246-277265 | MS.gene43476:CDS | 45.0% | |
| CATGTTACCTCTTCCTGATC+AGG | - | chr8.4:276891-276910 | MS.gene43476:CDS | 45.0% | |
| CTGTATTAGGAGTAGAGTGG+TGG | + | chr8.4:276939-276958 | None:intergenic | 45.0% | |
| GAAGTTTCTGTGACAATGGC+AGG | + | chr8.4:276764-276783 | None:intergenic | 45.0% | |
| GTTGCTGCTGATGCTGTATT+AGG | + | chr8.4:276952-276971 | None:intergenic | 45.0% | |
| TCAGAAGCAAGAGGAATCTG+TGG | - | chr8.4:277221-277240 | MS.gene43476:CDS | 45.0% | |
| TCATCATCATCATCAGCAGC+AGG | - | chr8.4:277110-277129 | MS.gene43476:CDS | 45.0% | |
| TGAAGTTGAAGGCTGAGTGA+TGG | + | chr8.4:276834-276853 | None:intergenic | 45.0% | |
| TGAATTTCCTCATGCTGTGG+TGG | + | chr8.4:276873-276892 | None:intergenic | 45.0% | |
| ! | CACCTTGGACTTCTTTTCTG+TGG | + | chr8.4:276786-276805 | None:intergenic | 45.0% |
| AATCATGCAGCTGCAATGGG+AGG | - | chr8.4:276664-276683 | MS.gene43476:CDS | 50.0% | |
| AGAAGTCCAAGGTGAGACTG+AGG | - | chr8.4:276792-276811 | MS.gene43476:CDS | 50.0% | |
| AGTTGAAGGCTGAGTGATGG+TGG | + | chr8.4:276831-276850 | None:intergenic | 50.0% | |
| ATCATGCAGCTGCAATGGGA+GGG | - | chr8.4:276665-276684 | MS.gene43476:CDS | 50.0% | |
| ATGATGTGGCCATGTCCATG+AGG | + | chr8.4:277021-277040 | None:intergenic | 50.0% | |
| CAAGCAGCAGCTGTTAGTAC+TGG | - | chr8.4:276565-276584 | MS.gene43476:CDS | 50.0% | |
| GATGAACAAGAAGAGGCAGC+AGG | - | chr8.4:277075-277094 | MS.gene43476:CDS | 50.0% | |
| TTCATGCCCAGTGGTGAACA+AGG | - | chr8.4:276712-276731 | MS.gene43476:CDS | 50.0% | |
| ! | TAGGAGTAGAGTGGTGGTGT+TGG | + | chr8.4:276933-276952 | None:intergenic | 50.0% |
| !! | AGCAGCTGTTAGTACTGGTG+TGG | - | chr8.4:276570-276589 | MS.gene43476:CDS | 50.0% |
| ATGGGAGGGAATGCCACAGA+TGG | - | chr8.4:276679-276698 | MS.gene43476:CDS | 55.0% | |
| ATGTGGCCATGTCCATGAGG+TGG | + | chr8.4:277018-277037 | None:intergenic | 55.0% | |
| CCAAGACCAAGAGCCTGATC+AGG | + | chr8.4:276907-276926 | None:intergenic | 55.0% | |
| CCAAGAGCCTGATCAGGAAG+AGG | + | chr8.4:276901-276920 | None:intergenic | 55.0% | |
| CCAAGGTGAGACTGAGGATC+AGG | - | chr8.4:276798-276817 | MS.gene43476:CDS | 55.0% | |
| CCTCTTCCTGATCAGGCTCT+TGG | - | chr8.4:276898-276917 | MS.gene43476:CDS | 55.0% | |
| CCTGATCAGGCTCTTGGTCT+TGG | - | chr8.4:276904-276923 | MS.gene43476:CDS | 55.0% | |
| CCTGATCCTCAGTCTCACCT+TGG | + | chr8.4:276801-276820 | None:intergenic | 55.0% | |
| GAACTCACCACAGCCATCTG+TGG | + | chr8.4:276695-276714 | None:intergenic | 55.0% | |
| TGTGGTGAGTTCATGCCCAG+TGG | - | chr8.4:276703-276722 | MS.gene43476:CDS | 55.0% | |
| AGAGCTGTAGCGCCACCTCA+TGG | - | chr8.4:277003-277022 | MS.gene43476:CDS | 60.0% | |
| GGGAATGCCACAGATGGCTG+TGG | - | chr8.4:276685-276704 | MS.gene43476:CDS | 60.0% | |
| GTAGCGCCACCTCATGGACA+TGG | - | chr8.4:277009-277028 | MS.gene43476:CDS | 60.0% | |
| !! | GGTGGCGCTACAGCTCTAGA+AGG | + | chr8.4:277000-277019 | None:intergenic | 60.0% |
| GGCAGCACCACCACAGCATG+AGG | - | chr8.4:276863-276882 | MS.gene43476:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 276562 | 277389 | 276562 | ID=MS.gene43476 |
| chr8.4 | mRNA | 276562 | 277389 | 276562 | ID=MS.gene43476.t1;Parent=MS.gene43476 |
| chr8.4 | exon | 276562 | 277389 | 276562 | ID=MS.gene43476.t1.exon1;Parent=MS.gene43476.t1 |
| chr8.4 | CDS | 276562 | 277389 | 276562 | ID=cds.MS.gene43476.t1;Parent=MS.gene43476.t1 |
| Gene Sequence |
| Protein sequence |
