AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012789

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012789.t1 MTR_4g134580 86.721 369 43 4 1 367 1 365 0.0 534
MS.gene012789.t1 MTR_1g077020 42.500 240 82 5 111 350 5 188 5.03e-61 194
MS.gene012789.t1 MTR_5g020510 41.633 245 102 7 108 350 92 297 3.51e-53 178
MS.gene012789.t1 MTR_3g100650 40.741 243 104 5 106 348 71 273 2.14e-51 172
MS.gene012789.t1 MTR_5g065440 41.057 246 101 7 113 348 56 267 7.08e-50 168
MS.gene012789.t1 MTR_2g076780 37.959 245 112 8 107 348 29 236 8.44e-43 149
MS.gene012789.t1 MTR_7g010300 70.312 64 19 0 286 349 220 283 3.57e-26 107
MS.gene012789.t1 MTR_6g012280 59.211 76 30 1 286 361 222 296 1.52e-24 102
MS.gene012789.t1 MTR_6g012280 57.692 52 20 1 115 164 91 142 2.39e-13 70.5
MS.gene012789.t1 MTR_5g032600 74.510 51 13 0 114 164 77 127 1.45e-22 96.3
MS.gene012789.t1 MTR_8g467340 58.824 68 28 0 286 353 271 338 2.26e-22 97.8
MS.gene012789.t1 MTR_3g039810 56.757 74 30 1 98 169 1 74 3.62e-20 84.3
MS.gene012789.t1 MTR_8g069080 53.731 67 29 1 100 164 52 118 2.51e-19 87.0
MS.gene012789.t1 MTR_8g069380 58.730 63 26 0 286 348 52 114 2.52e-19 83.2
MS.gene012789.t1 MTR_6g073013 55.000 60 26 1 286 344 101 160 1.04e-18 83.2
MS.gene012789.t1 MTR_6g073013 60.000 50 19 1 115 163 19 68 1.74e-14 71.2
MS.gene012789.t1 MTR_8g051480 59.677 62 24 1 287 348 68 128 5.39e-18 79.7
MS.gene012789.t1 MTR_6g012220 61.538 52 16 1 112 163 18 65 5.23e-14 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012789.t1 AT2G02540 47.581 248 90 4 103 348 75 284 1.09e-68 218
MS.gene012789.t1 AT2G02540 47.581 248 90 4 103 348 75 284 1.09e-68 218
MS.gene012789.t1 AT1G14440 48.571 245 67 7 112 348 87 280 6.59e-62 201
MS.gene012789.t1 AT1G14440 48.571 245 67 7 112 348 87 280 6.59e-62 201
MS.gene012789.t1 AT2G18350 37.234 282 101 7 81 350 45 262 6.66e-48 163
MS.gene012789.t1 AT1G69600 37.143 245 96 7 113 351 29 221 3.59e-43 150
MS.gene012789.t1 AT5G60480 31.489 235 96 5 111 343 33 204 7.24e-34 125
MS.gene012789.t1 AT1G75240 78.571 56 12 0 112 167 73 128 3.13e-26 107
MS.gene012789.t1 AT4G24660 64.516 62 22 0 287 348 158 219 8.29e-24 98.6
MS.gene012789.t1 AT4G24660 72.222 54 15 0 113 166 47 100 8.62e-23 95.5
MS.gene012789.t1 AT4G24660 56.164 73 32 0 287 359 158 230 4.67e-23 96.7
MS.gene012789.t1 AT4G24660 72.222 54 15 0 113 166 47 100 8.92e-23 95.9
MS.gene012789.t1 AT5G65410 60.317 63 25 0 285 347 190 252 1.04e-22 96.7
MS.gene012789.t1 AT5G65410 69.811 53 16 0 113 165 73 125 5.25e-21 92.0
MS.gene012789.t1 AT5G39760 51.220 82 38 1 286 365 200 281 2.42e-21 94.0
MS.gene012789.t1 AT5G15210 63.158 57 21 0 286 342 179 235 3.88e-21 92.4
MS.gene012789.t1 AT5G15210 61.818 55 19 1 112 164 53 107 6.87e-16 77.4
MS.gene012789.t1 AT1G74660 66.667 57 19 0 113 169 37 93 5.60e-21 87.0
MS.gene012789.t1 AT1G74660 67.857 56 18 0 113 168 37 92 7.34e-21 86.7
MS.gene012789.t1 AT3G28917 66.667 57 18 1 113 168 31 87 2.49e-20 85.5
MS.gene012789.t1 AT3G28920 60.000 60 24 0 286 345 192 251 2.53e-20 90.9
MS.gene012789.t1 AT3G50890 65.455 55 19 0 113 167 58 112 7.66e-20 88.2
MS.gene012789.t1 AT3G50890 47.368 57 30 0 291 347 186 242 1.97e-14 72.8
MS.gene012789.t1 AT1G18835 63.158 57 18 1 113 169 24 77 8.42e-17 75.1
MS.gene012789.t1 AT5G42780 60.784 51 18 1 115 165 64 112 4.26e-13 68.9
MS.gene012789.t1 AT5G42780 41.176 68 38 1 278 345 173 238 9.95e-13 67.8

Find 84 sgRNAs with CRISPR-Local

Find 95 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCATTAACTGAAGGGTTT+TGG 0.183475 8.1:+269892 None:intergenic
TTATTATTATTGTGGTTTAT+TGG 0.190415 8.1:+270083 None:intergenic
TATTATTATTGTGGTTTATT+GGG 0.222211 8.1:+270084 None:intergenic
CCCCAAAACCCTTCAGTTAA+TGG 0.254181 8.1:-269894 MS.gene012789:CDS
CCTGATCAGGCTCTTGGTCT+TGG 0.311106 8.1:-269516 MS.gene012789:CDS
CTCTTCTTGTTCATCAGATT+CGG 0.338219 8.1:+269353 None:intergenic
AATGGTTCCTTGTTCACCAC+TGG 0.354032 8.1:+269701 None:intergenic
TTATTGGGATTTCTCCATCT+TGG 0.359976 8.1:+270099 None:intergenic
GTTGCTGCTGATGCTGTATT+AGG 0.369444 8.1:+269471 None:intergenic
CCTCTTCCTGATCAGGCTCT+TGG 0.375629 8.1:-269522 MS.gene012789:CDS
CATGTTACCTCTTCCTGATC+AGG 0.387160 8.1:-269529 MS.gene012789:CDS
CCTTCAACTTCAACTTCAAC+AGG 0.390687 8.1:-269578 MS.gene012789:CDS
CCTGTTGAAGTTGAAGTTGA+AGG 0.398274 8.1:+269578 None:intergenic
GGTACTACTGCCACTGGTAC+TGG 0.421288 8.1:+269915 None:intergenic
TGGTGTAGTGGAGGAGGATG+AGG 0.421641 8.1:+269984 None:intergenic
GATTTCTCCATCTTGGCTGT+TGG 0.421739 8.1:+270106 None:intergenic
AGAGCAGTTGAGTGCTTCAA+TGG 0.440838 8.1:+269683 None:intergenic
AATAATTATGGTACTAGTAA+TGG 0.445222 8.1:-270050 MS.gene012789:CDS
AAAGAAGAGTGCTCAAGGTT+TGG 0.446033 8.1:-269128 MS.gene012789:CDS
GAAGGTATGTTGTAGTTGAA+TGG 0.452483 8.1:+269375 None:intergenic
CCTGATCCTCAGTCTCACCT+TGG 0.455452 8.1:+269622 None:intergenic
CCAAGACCAAGAGCCTGATC+AGG 0.460517 8.1:+269516 None:intergenic
CCAAGGTGAGACTGAGGATC+AGG 0.460530 8.1:-269622 MS.gene012789:CDS
AACTGATGACGATTTCTTGT+AGG 0.461489 8.1:+269806 None:intergenic
AGCAGGTAGTGATGAAGAAA+AGG 0.463951 8.1:-269275 MS.gene012789:CDS
TAGTGATGAAGAAAAGGTTC+AGG 0.467781 8.1:-269269 MS.gene012789:CDS
CAACAGTTCTGCCAAGAGAT+TGG 0.479137 8.1:-269156 MS.gene012789:CDS
TAGGAGTAGAGTGGTGGTGT+TGG 0.483759 8.1:+269490 None:intergenic
AATACAGCATCAGCAGCAAC+AGG 0.487107 8.1:-269468 MS.gene012789:CDS
AAGAATCATGCAGCTGCAAT+GGG 0.493612 8.1:-269759 MS.gene012789:CDS
ATGGTTCCTTGTTCACCACT+GGG 0.498200 8.1:+269702 None:intergenic
AAAGAATCATGCAGCTGCAA+TGG 0.500219 8.1:-269760 MS.gene012789:CDS
CGCAGTAGTGCCAGTACCAG+TGG 0.506274 8.1:-269925 MS.gene012789:CDS
GGCAGCACCACCACAGCATG+AGG 0.512800 8.1:-269557 MS.gene012789:CDS
GAACTTTCCAACAGCCAAGA+TGG 0.514451 8.1:-270113 MS.gene012789:CDS
CAAGCAGCAGCTGTTAGTAC+TGG 0.515000 8.1:-269855 MS.gene012789:CDS
AGAGCTGTAGCGCCACCTCA+TGG 0.521678 8.1:-269417 MS.gene012789:CDS
GGTGTAGTGGAGGAGGATGA+GGG 0.535345 8.1:+269985 None:intergenic
GGTGGCGCTACAGCTCTAGA+AGG 0.538474 8.1:+269423 None:intergenic
CGAATCTGATGAACAAGAAG+AGG 0.550515 8.1:-269352 MS.gene012789:CDS
ATATAATATTACTGTGATTG+TGG 0.551597 8.1:+269964 None:intergenic
GAAGTTTCTGTGACAATGGC+AGG 0.555632 8.1:+269659 None:intergenic
CCAAGAGCCTGATCAGGAAG+AGG 0.556475 8.1:+269522 None:intergenic
TCTTGTTCATCAGATTCGGA+AGG 0.560538 8.1:+269357 None:intergenic
CTAACAGCTGCTGCTTGCAT+AGG 0.566961 8.1:+269861 None:intergenic
AAAATTCACACAGGAACAGA+AGG 0.568057 8.1:-269244 MS.gene012789:CDS
GTGGTTGTGCCATTAACTGA+AGG 0.568135 8.1:+269885 None:intergenic
TGATTGTGGTGTAGTGGAGG+AGG 0.569506 8.1:+269978 None:intergenic
TTCATGCCCAGTGGTGAACA+AGG 0.570431 8.1:-269708 MS.gene012789:CDS
TGTGGAAGTTTCTGTGACAA+TGG 0.570726 8.1:+269655 None:intergenic
CAAGAAATCGTCATCAGTTG+TGG 0.580092 8.1:-269802 MS.gene012789:CDS
GATGAACAAGAAGAGGCAGC+AGG 0.580135 8.1:-269345 MS.gene012789:CDS
TGGTTGTGCCATTAACTGAA+GGG 0.581647 8.1:+269886 None:intergenic
TGATGACGATTTCTTGTAGG+AGG 0.584121 8.1:+269809 None:intergenic
CTGTGATTGTGGTGTAGTGG+AGG 0.591651 8.1:+269975 None:intergenic
AATCATGCAGCTGCAATGGG+AGG 0.592565 8.1:-269756 MS.gene012789:CDS
GTAGCGCCACCTCATGGACA+TGG 0.593213 8.1:-269411 MS.gene012789:CDS
TGAATTTCCTCATGCTGTGG+TGG 0.602127 8.1:+269550 None:intergenic
TGTGAAAAGAAGAGTGCTCA+AGG 0.602235 8.1:-269133 MS.gene012789:CDS
ATCATGCAGCTGCAATGGGA+GGG 0.602761 8.1:-269755 MS.gene012789:CDS
ATGGAAATTTCAGAAGCAAG+AGG 0.613533 8.1:-269190 MS.gene012789:CDS
GGGAATGCCACAGATGGCTG+TGG 0.614228 8.1:-269735 MS.gene012789:CDS
TTACTGTGATTGTGGTGTAG+TGG 0.616570 8.1:+269972 None:intergenic
TGAAGTTGAAGGCTGAGTGA+TGG 0.622721 8.1:+269589 None:intergenic
AGTTGAAGGCTGAGTGATGG+TGG 0.623553 8.1:+269592 None:intergenic
ATGGGAGGGAATGCCACAGA+TGG 0.625053 8.1:-269741 MS.gene012789:CDS
AGCTGCTGCTTGCATAGGAG+TGG 0.626710 8.1:+269866 None:intergenic
AGAAGTCCAAGGTGAGACTG+AGG 0.639644 8.1:-269628 MS.gene012789:CDS
GGTGTTCATGAACATGATGA+TGG 0.640624 8.1:+270006 None:intergenic
AGCAGCTGTTAGTACTGGTG+TGG 0.641970 8.1:-269850 MS.gene012789:CDS
CACTGGTACTGGCACTACTG+CGG 0.649774 8.1:+269926 None:intergenic
TTCCACAGAAAAGAAGTCCA+AGG 0.650236 8.1:-269639 MS.gene012789:CDS
TCAGAAGCAAGAGGAATCTG+TGG 0.650938 8.1:-269181 MS.gene012789:CDS
AGTTGAATGGCATGATGATG+TGG 0.657862 8.1:+269388 None:intergenic
ATGTGGCCATGTCCATGAGG+TGG 0.659218 8.1:+269405 None:intergenic
ACATGAATTTCCTCATGCTG+TGG 0.665457 8.1:+269547 None:intergenic
AATCGTCATCAGTTGTGGTG+AGG 0.674142 8.1:-269797 MS.gene012789:CDS
CTGTATTAGGAGTAGAGTGG+TGG 0.678813 8.1:+269484 None:intergenic
TGTGGTGAGTTCATGCCCAG+TGG 0.682320 8.1:-269717 MS.gene012789:CDS
TATGGTACTAGTAATGGACA+TGG 0.682582 8.1:-270044 MS.gene012789:CDS
GAACTCACCACAGCCATCTG+TGG 0.688684 8.1:+269728 None:intergenic
GTTCAGGACAAAATTCACAC+AGG 0.704613 8.1:-269253 MS.gene012789:CDS
ATGCTGTATTAGGAGTAGAG+TGG 0.716681 8.1:+269481 None:intergenic
ATGATGTGGCCATGTCCATG+AGG 0.730801 8.1:+269402 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATTA+TGG - chr8.1:269089-269108 MS.gene012789:CDS 0.0%
!! TATTATTATTGTGGTTTATT+GGG + chr8.1:269070-269089 None:intergenic 15.0%
!! TTATTATTATTGTGGTTTAT+TGG + chr8.1:269071-269090 None:intergenic 15.0%
!! AATAATTATGGTACTAGTAA+TGG - chr8.1:269101-269120 MS.gene012789:CDS 20.0%
!! ATATAATATTACTGTGATTG+TGG + chr8.1:269190-269209 None:intergenic 20.0%
!!! TTCATGTTGAAGTTGTTTTT+TGG + chr8.1:270074-270093 None:intergenic 25.0%
! TTCAATTTTGCTGAGAAAGT+TGG - chr8.1:269938-269957 MS.gene012789:CDS 30.0%
AAAATTCACACAGGAACAGA+AGG - chr8.1:269907-269926 MS.gene012789:CDS 35.0%
ATGGAAATTTCAGAAGCAAG+AGG - chr8.1:269961-269980 MS.gene012789:CDS 35.0%
CTCTTCTTGTTCATCAGATT+CGG + chr8.1:269801-269820 None:intergenic 35.0%
TAGTGATGAAGAAAAGGTTC+AGG - chr8.1:269882-269901 MS.gene012789:CDS 35.0%
TTATTGGGATTTCTCCATCT+TGG + chr8.1:269055-269074 None:intergenic 35.0%
! AACTGATGACGATTTCTTGT+AGG + chr8.1:269348-269367 None:intergenic 35.0%
! ATTTTGCTGAGAAAGTTGGA+TGG - chr8.1:269942-269961 MS.gene012789:CDS 35.0%
! GAAGGTATGTTGTAGTTGAA+TGG + chr8.1:269779-269798 None:intergenic 35.0%
! TTCTTTTCACACCAATCTCT+TGG + chr8.1:270009-270028 None:intergenic 35.0%
!! TATGGTACTAGTAATGGACA+TGG - chr8.1:269107-269126 MS.gene012789:CDS 35.0%
AAAGAATCATGCAGCTGCAA+TGG - chr8.1:269391-269410 MS.gene012789:CDS 40.0%
AAGAATCATGCAGCTGCAAT+GGG - chr8.1:269392-269411 MS.gene012789:CDS 40.0%
ACATGAATTTCCTCATGCTG+TGG + chr8.1:269607-269626 None:intergenic 40.0%
AGCAGGTAGTGATGAAGAAA+AGG - chr8.1:269876-269895 MS.gene012789:CDS 40.0%
ATGCTGTATTAGGAGTAGAG+TGG + chr8.1:269673-269692 None:intergenic 40.0%
CAAGAAATCGTCATCAGTTG+TGG - chr8.1:269349-269368 MS.gene012789:CDS 40.0%
CCTGTTGAAGTTGAAGTTGA+AGG + chr8.1:269576-269595 None:intergenic 40.0%
CCTTCAACTTCAACTTCAAC+AGG - chr8.1:269573-269592 MS.gene012789:CDS 40.0%
CGAATCTGATGAACAAGAAG+AGG - chr8.1:269799-269818 MS.gene012789:CDS 40.0%
GGTGTTCATGAACATGATGA+TGG + chr8.1:269148-269167 None:intergenic 40.0%
GTTCAGGACAAAATTCACAC+AGG - chr8.1:269898-269917 MS.gene012789:CDS 40.0%
TCTTGTTCATCAGATTCGGA+AGG + chr8.1:269797-269816 None:intergenic 40.0%
TGTGGAAGTTTCTGTGACAA+TGG + chr8.1:269499-269518 None:intergenic 40.0%
TTACTGTGATTGTGGTGTAG+TGG + chr8.1:269182-269201 None:intergenic 40.0%
TTCCACAGAAAAGAAGTCCA+AGG - chr8.1:269512-269531 MS.gene012789:CDS 40.0%
! AGTTGAATGGCATGATGATG+TGG + chr8.1:269766-269785 None:intergenic 40.0%
! CCATTAACTGAAGGGTTTTG+GGG + chr8.1:269260-269279 None:intergenic 40.0%
! GCCATTAACTGAAGGGTTTT+GGG + chr8.1:269261-269280 None:intergenic 40.0%
! TGATGACGATTTCTTGTAGG+AGG + chr8.1:269345-269364 None:intergenic 40.0%
! TGCCATTAACTGAAGGGTTT+TGG + chr8.1:269262-269281 None:intergenic 40.0%
! TGGTTGTGCCATTAACTGAA+GGG + chr8.1:269268-269287 None:intergenic 40.0%
!! AAAGAAGAGTGCTCAAGGTT+TGG - chr8.1:270023-270042 MS.gene012789:CDS 40.0%
!! TGTGAAAAGAAGAGTGCTCA+AGG - chr8.1:270018-270037 MS.gene012789:CDS 40.0%
AATACAGCATCAGCAGCAAC+AGG - chr8.1:269683-269702 MS.gene012789:CDS 45.0%
AATCGTCATCAGTTGTGGTG+AGG - chr8.1:269354-269373 MS.gene012789:CDS 45.0%
AATGGTTCCTTGTTCACCAC+TGG + chr8.1:269453-269472 None:intergenic 45.0%
AGAGCAGTTGAGTGCTTCAA+TGG + chr8.1:269471-269490 None:intergenic 45.0%
ATGGTTCCTTGTTCACCACT+GGG + chr8.1:269452-269471 None:intergenic 45.0%
CAACAGTTCTGCCAAGAGAT+TGG - chr8.1:269995-270014 MS.gene012789:CDS 45.0%
CATGTTACCTCTTCCTGATC+AGG - chr8.1:269622-269641 MS.gene012789:CDS 45.0%
CCCCAAAACCCTTCAGTTAA+TGG - chr8.1:269257-269276 MS.gene012789:CDS 45.0%
CTGTATTAGGAGTAGAGTGG+TGG + chr8.1:269670-269689 None:intergenic 45.0%
GAACTTTCCAACAGCCAAGA+TGG - chr8.1:269038-269057 MS.gene012789:CDS 45.0%
GAAGTTTCTGTGACAATGGC+AGG + chr8.1:269495-269514 None:intergenic 45.0%
GATTTCTCCATCTTGGCTGT+TGG + chr8.1:269048-269067 None:intergenic 45.0%
GTTGCTGCTGATGCTGTATT+AGG + chr8.1:269683-269702 None:intergenic 45.0%
TCAGAAGCAAGAGGAATCTG+TGG - chr8.1:269970-269989 MS.gene012789:CDS 45.0%
TGAAGTTGAAGGCTGAGTGA+TGG + chr8.1:269565-269584 None:intergenic 45.0%
TGAATTTCCTCATGCTGTGG+TGG + chr8.1:269604-269623 None:intergenic 45.0%
! CACCTTGGACTTCTTTTCTG+TGG + chr8.1:269517-269536 None:intergenic 45.0%
! GTGGTTGTGCCATTAACTGA+AGG + chr8.1:269269-269288 None:intergenic 45.0%
!! TATTATTATTATTATTATTG+TGG + chr8.1:269079-269098 None:intergenic 5.0%
AATCATGCAGCTGCAATGGG+AGG - chr8.1:269395-269414 MS.gene012789:CDS 50.0%
AGAAGTCCAAGGTGAGACTG+AGG - chr8.1:269523-269542 MS.gene012789:CDS 50.0%
AGTTGAAGGCTGAGTGATGG+TGG + chr8.1:269562-269581 None:intergenic 50.0%
ATCATGCAGCTGCAATGGGA+GGG - chr8.1:269396-269415 MS.gene012789:CDS 50.0%
ATGATGTGGCCATGTCCATG+AGG + chr8.1:269752-269771 None:intergenic 50.0%
CAAGCAGCAGCTGTTAGTAC+TGG - chr8.1:269296-269315 MS.gene012789:CDS 50.0%
CTGTGATTGTGGTGTAGTGG+AGG + chr8.1:269179-269198 None:intergenic 50.0%
GATGAACAAGAAGAGGCAGC+AGG - chr8.1:269806-269825 MS.gene012789:CDS 50.0%
TTCATGCCCAGTGGTGAACA+AGG - chr8.1:269443-269462 MS.gene012789:CDS 50.0%
! CTAACAGCTGCTGCTTGCAT+AGG + chr8.1:269293-269312 None:intergenic 50.0%
! TAGGAGTAGAGTGGTGGTGT+TGG + chr8.1:269664-269683 None:intergenic 50.0%
! TGATTGTGGTGTAGTGGAGG+AGG + chr8.1:269176-269195 None:intergenic 50.0%
!! AGCAGCTGTTAGTACTGGTG+TGG - chr8.1:269301-269320 MS.gene012789:CDS 50.0%
!!! TTTTGGGGTACTACTGCCAC+TGG + chr8.1:269245-269264 None:intergenic 50.0%
ATGGGAGGGAATGCCACAGA+TGG - chr8.1:269410-269429 MS.gene012789:CDS 55.0%
ATGTGGCCATGTCCATGAGG+TGG + chr8.1:269749-269768 None:intergenic 55.0%
CCAAGACCAAGAGCCTGATC+AGG + chr8.1:269638-269657 None:intergenic 55.0%
CCAAGAGCCTGATCAGGAAG+AGG + chr8.1:269632-269651 None:intergenic 55.0%
CCAAGGTGAGACTGAGGATC+AGG - chr8.1:269529-269548 MS.gene012789:CDS 55.0%
CCTCTTCCTGATCAGGCTCT+TGG - chr8.1:269629-269648 MS.gene012789:CDS 55.0%
CCTGATCAGGCTCTTGGTCT+TGG - chr8.1:269635-269654 MS.gene012789:CDS 55.0%
CCTGATCCTCAGTCTCACCT+TGG + chr8.1:269532-269551 None:intergenic 55.0%
GAACTCACCACAGCCATCTG+TGG + chr8.1:269426-269445 None:intergenic 55.0%
GGTACTACTGCCACTGGTAC+TGG + chr8.1:269239-269258 None:intergenic 55.0%
TGTGGTGAGTTCATGCCCAG+TGG - chr8.1:269434-269453 MS.gene012789:CDS 55.0%
! AGCTGCTGCTTGCATAGGAG+TGG + chr8.1:269288-269307 None:intergenic 55.0%
! GGTGTAGTGGAGGAGGATGA+GGG + chr8.1:269169-269188 None:intergenic 55.0%
! TGGTGTAGTGGAGGAGGATG+AGG + chr8.1:269170-269189 None:intergenic 55.0%
!! CACTGGTACTGGCACTACTG+CGG + chr8.1:269228-269247 None:intergenic 55.0%
AGAGCTGTAGCGCCACCTCA+TGG - chr8.1:269734-269753 MS.gene012789:CDS 60.0%
CGCAGTAGTGCCAGTACCAG+TGG - chr8.1:269226-269245 MS.gene012789:CDS 60.0%
GGGAATGCCACAGATGGCTG+TGG - chr8.1:269416-269435 MS.gene012789:CDS 60.0%
GTAGCGCCACCTCATGGACA+TGG - chr8.1:269740-269759 MS.gene012789:CDS 60.0%
!! GGTGGCGCTACAGCTCTAGA+AGG + chr8.1:269731-269750 None:intergenic 60.0%
GGCAGCACCACCACAGCATG+AGG - chr8.1:269594-269613 MS.gene012789:CDS 65.0%
GCAGCAGCAGCAGCAGCAGC+AGG - chr8.1:269856-269875 MS.gene012789:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 269035 270138 269035 ID=MS.gene012789
chr8.1 mRNA 269035 270138 269035 ID=MS.gene012789.t1;Parent=MS.gene012789
chr8.1 exon 269035 270138 269035 ID=MS.gene012789.t1.exon1;Parent=MS.gene012789.t1
chr8.1 CDS 269035 270138 269035 ID=cds.MS.gene012789.t1;Parent=MS.gene012789.t1
Gene Sequence

>MS.gene012789

ATGGAACTTTCCAACAGCCAAGATGGAGAAATCCCAATAAACCACAATAATAATAATAATAATAATAATAATTATGGTACTAGTAATGGACATGGTCATCACATGATTCACCATCATCATGTTCATGAACACCCTCATCCTCCTCCACTACACCACAATCACAGTAATATTATATCATCATCTTCTTCAGCCGCAGTAGTGCCAGTACCAGTGGCAGTAGTACCCCAAAACCCTTCAGTTAATGGCACAACCACTCCTATGCAAGCAGCAGCTGTTAGTACTGGTGTGGAATTAGATCATGATCAGTCCTCCTACAAGAAATCGTCATCAGTTGTGGTGAGGTACAGAGAATGTCTAAAGAATCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGCTGTGGTGAGTTCATGCCCAGTGGTGAACAAGGAACCATTGAAGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTCCAAGGTGAGACTGAGGATCAGGAAAACTACCACCATCACTCAGCCTTCAACTTCAACTTCAACAGGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAGGCTCTTGGTCTTGGCTACCAACACCACCACTCTACTCCTAATACAGCATCAGCAGCAACAGGTAACAACAACAACAACATTCTTCCTTCTAGAGCTGTAGCGCCACCTCATGGACATGGCCACATCATCATGCCATTCAACTACAACATACCTTCCGAATCTGATGAACAAGAAGAGGCAGCAGGTAGACTACATATTCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGGTAGTGATGAAGAAAAGGTTCAGGACAAAATTCACACAGGAACAGAAGGACAAAATGTTCAATTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAGCAAGAGGAATCTGTGGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAACTTCAACATGAACATATTACTGCTAGTGCTAGTGCTAATCATCTCCCAACTCCATAA
Protein sequence

>MS.gene012789.t1

MELSNSQDGEIPINHNNNNNNNNNYGTSNGHGHHMIHHHHVHEHPHPPPLHHNHSNIISSSSSAAVVPVPVAVVPQNPSVNGTTTPMQAAAVSTGVELDHDQSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVQGETEDQENYHHHSAFNFNFNRQHHHSMRKFMLPLPDQALGLGYQHHHSTPNTASAATGNNNNNILPSRAVAPPHGHGHIIMPFNYNIPSESDEQEEAAGRLHIHHHHQQQQQQQQQVVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQHEHITASASANHLPTP