AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042050.t1 MTR_4g134580 95.638 298 11 2 10 306 69 365 0.0 588
MS.gene042050.t1 MTR_1g077020 42.500 240 82 5 50 289 5 188 1.84e-61 194
MS.gene042050.t1 MTR_5g020510 41.224 245 103 7 47 289 92 297 1.87e-53 177
MS.gene042050.t1 MTR_3g100650 40.741 243 104 5 45 287 71 273 6.49e-52 172
MS.gene042050.t1 MTR_5g065440 40.244 246 103 6 52 287 56 267 1.61e-50 168
MS.gene042050.t1 MTR_2g076780 37.959 245 112 8 46 287 29 236 1.56e-43 149
MS.gene042050.t1 MTR_8g069080 33.858 254 125 9 39 287 52 267 3.09e-35 128
MS.gene042050.t1 MTR_7g010300 70.312 64 19 0 225 288 220 283 2.72e-26 106
MS.gene042050.t1 MTR_6g012280 59.211 76 30 1 225 300 222 296 5.52e-25 102
MS.gene042050.t1 MTR_6g012280 57.692 52 20 1 54 103 91 142 1.50e-13 70.5
MS.gene042050.t1 MTR_5g032600 73.077 52 14 0 52 103 76 127 6.83e-23 95.9
MS.gene042050.t1 MTR_8g467340 58.824 68 28 0 225 292 271 338 1.18e-22 97.1
MS.gene042050.t1 MTR_3g039810 63.077 65 22 1 45 107 9 73 2.46e-20 84.0
MS.gene042050.t1 MTR_8g069380 58.730 63 26 0 225 287 52 114 1.75e-19 82.4
MS.gene042050.t1 MTR_6g073013 55.000 60 26 1 225 283 101 160 1.08e-18 82.4
MS.gene042050.t1 MTR_6g073013 60.000 50 19 1 54 102 19 68 8.13e-15 71.6
MS.gene042050.t1 MTR_8g051480 59.677 62 24 1 226 287 68 128 3.75e-18 79.3
MS.gene042050.t1 MTR_6g012220 61.538 52 16 1 51 102 18 65 2.84e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042050.t1 AT2G02540 47.581 248 90 4 42 287 75 284 7.53e-69 217
MS.gene042050.t1 AT2G02540 47.581 248 90 4 42 287 75 284 7.53e-69 217
MS.gene042050.t1 AT1G14440 48.117 239 77 5 51 287 87 280 8.38e-62 199
MS.gene042050.t1 AT1G14440 48.117 239 77 5 51 287 87 280 8.38e-62 199
MS.gene042050.t1 AT2G18350 37.234 282 101 7 20 289 45 262 1.20e-48 163
MS.gene042050.t1 AT1G69600 37.143 245 96 7 52 290 29 221 7.64e-44 150
MS.gene042050.t1 AT5G60480 31.489 235 96 5 50 282 33 204 3.41e-34 124
MS.gene042050.t1 AT1G75240 78.571 56 12 0 51 106 73 128 1.54e-26 106
MS.gene042050.t1 AT4G24660 64.516 62 22 0 226 287 158 219 8.99e-24 97.1
MS.gene042050.t1 AT4G24660 72.222 54 15 0 52 105 47 100 4.22e-23 95.5
MS.gene042050.t1 AT4G24660 72.222 54 15 0 52 105 47 100 4.39e-23 95.5
MS.gene042050.t1 AT4G24660 56.164 73 32 0 226 298 158 230 5.56e-23 95.1
MS.gene042050.t1 AT5G65410 60.317 63 25 0 224 286 190 252 7.93e-23 95.9
MS.gene042050.t1 AT5G65410 71.154 52 15 0 53 104 74 125 3.87e-21 91.3
MS.gene042050.t1 AT5G39760 51.220 82 38 1 225 304 200 281 1.12e-21 93.6
MS.gene042050.t1 AT1G74660 66.667 57 19 0 52 108 37 93 3.96e-21 86.7
MS.gene042050.t1 AT5G15210 63.158 57 21 0 225 281 179 235 4.02e-21 91.3
MS.gene042050.t1 AT5G15210 61.818 55 19 1 51 103 53 107 2.44e-16 77.8
MS.gene042050.t1 AT1G74660 67.857 56 18 0 52 107 37 92 5.07e-21 86.3
MS.gene042050.t1 AT3G28920 60.000 60 24 0 225 284 192 251 1.72e-20 90.1
MS.gene042050.t1 AT3G28917 66.667 57 18 1 52 107 31 87 1.95e-20 84.7
MS.gene042050.t1 AT3G50890 65.455 55 19 0 52 106 58 112 4.90e-20 87.8
MS.gene042050.t1 AT3G50890 47.368 57 30 0 230 286 186 242 2.49e-14 71.6
MS.gene042050.t1 AT1G18835 63.158 57 18 1 52 108 24 77 5.98e-17 75.1
MS.gene042050.t1 AT5G42780 60.784 51 18 1 54 104 64 112 2.11e-13 68.9
MS.gene042050.t1 AT5G42780 42.424 66 38 0 219 284 173 238 6.89e-13 67.4

Find 70 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCATTAACTGAAGGGTTT+TGG 0.183475 8.3:+205979 None:intergenic
CCCCAAAACCCTTCAGTTAA+TGG 0.254181 8.3:-205981 MS.gene042050:CDS
CCTGATCAGGCTCTTGGTCT+TGG 0.311106 8.3:-205603 MS.gene042050:CDS
CTCTTCTTGTTCATCAGATT+CGG 0.338219 8.3:+205440 None:intergenic
AATGGTTCCTTGTTCACCAC+TGG 0.354032 8.3:+205788 None:intergenic
GTTGCTGCTGATGCTGTATT+AGG 0.369444 8.3:+205558 None:intergenic
CCTCTTCCTGATCAGGCTCT+TGG 0.375629 8.3:-205609 MS.gene042050:CDS
CATGTTACCTCTTCCTGATC+AGG 0.387160 8.3:-205616 MS.gene042050:CDS
CCTTCAACTTCAACTTCAAC+AGG 0.390687 8.3:-205665 MS.gene042050:CDS
CCTGTTGAAGTTGAAGTTGA+AGG 0.398274 8.3:+205665 None:intergenic
GGTACTACTGCCACTGGTAC+TGG 0.421288 8.3:+206002 None:intergenic
AGAGCAGTTGAGTGCTTCAA+TGG 0.440838 8.3:+205770 None:intergenic
AAAGAAGAGTGCTCAAGGTT+TGG 0.446033 8.3:-205215 MS.gene042050:CDS
GAAGGTATGTTGTAGTTGAA+TGG 0.452483 8.3:+205462 None:intergenic
CCTGATCCTCAGTCTCACCT+TGG 0.455452 8.3:+205709 None:intergenic
AACTGGTGTATGTTAATTGA+AGG 0.460487 8.3:-206338 None:intergenic
CCAAGACCAAGAGCCTGATC+AGG 0.460517 8.3:+205603 None:intergenic
CCAAGGTGAGACTGAGGATC+AGG 0.460530 8.3:-205709 MS.gene042050:CDS
AACTGATGACGATTTCTTGT+AGG 0.461489 8.3:+205893 None:intergenic
TAGTGATGAAGAAAAGGTTC+AGG 0.467781 8.3:-205356 MS.gene042050:CDS
CAACAGTTCTGCCAAGAGAT+TGG 0.479137 8.3:-205243 MS.gene042050:CDS
TAGGAGTAGAGTGGTGGTGT+TGG 0.483759 8.3:+205577 None:intergenic
AATACAGCATCAGCAGCAAC+AGG 0.487107 8.3:-205555 MS.gene042050:CDS
AGGAGGTAGTGATGAAGAAA+AGG 0.488273 8.3:-205362 MS.gene042050:CDS
AAGAATCATGCAGCTGCAAT+GGG 0.493612 8.3:-205846 MS.gene042050:CDS
ATGGTTCCTTGTTCACCACT+GGG 0.498200 8.3:+205789 None:intergenic
AAAGAATCATGCAGCTGCAA+TGG 0.500219 8.3:-205847 MS.gene042050:CDS
CGCAGTAGTGCCAGTACCAG+TGG 0.506274 8.3:-206012 MS.gene042050:intron
GGCAGCACCACCACAGCATG+AGG 0.512800 8.3:-205644 MS.gene042050:CDS
CAAGCAGCAGCTGTTAGTAC+TGG 0.515000 8.3:-205942 MS.gene042050:CDS
AGAGCTGTAGCGCCACCTCA+TGG 0.521678 8.3:-205504 MS.gene042050:CDS
GGTGGCGCTACAGCTCTAGA+AGG 0.538474 8.3:+205510 None:intergenic
CGAATCTGATGAACAAGAAG+AGG 0.550515 8.3:-205439 MS.gene042050:CDS
GAAGTTTCTGTGACAATGGC+AGG 0.555632 8.3:+205746 None:intergenic
CCAAGAGCCTGATCAGGAAG+AGG 0.556475 8.3:+205609 None:intergenic
TCTTGTTCATCAGATTCGGA+AGG 0.560538 8.3:+205444 None:intergenic
CTAACAGCTGCTGCTTGCAT+AGG 0.566961 8.3:+205948 None:intergenic
AAAATTCACACAGGAACAGA+AGG 0.568057 8.3:-205331 MS.gene042050:CDS
GTGGTTGTGCCATTAACTGA+AGG 0.568135 8.3:+205972 None:intergenic
TTCATGCCCAGTGGTGAACA+AGG 0.570431 8.3:-205795 MS.gene042050:CDS
TGTGGAAGTTTCTGTGACAA+TGG 0.570726 8.3:+205742 None:intergenic
CAAGAAATCGTCATCAGTTG+TGG 0.580092 8.3:-205889 MS.gene042050:CDS
GATGAACAAGAAGAGGCAGC+AGG 0.580135 8.3:-205432 MS.gene042050:CDS
TGGTTGTGCCATTAACTGAA+GGG 0.581647 8.3:+205973 None:intergenic
TGATGACGATTTCTTGTAGG+AGG 0.584121 8.3:+205896 None:intergenic
AATCATGCAGCTGCAATGGG+AGG 0.592565 8.3:-205843 MS.gene042050:CDS
GTAGCGCCACCTCATGGACA+TGG 0.593213 8.3:-205498 MS.gene042050:CDS
TGAATTTCCTCATGCTGTGG+TGG 0.602127 8.3:+205637 None:intergenic
TGTGAAAAGAAGAGTGCTCA+AGG 0.602235 8.3:-205220 MS.gene042050:CDS
ATCATGCAGCTGCAATGGGA+GGG 0.602761 8.3:-205842 MS.gene042050:CDS
ATGGAAATTTCAGAAGCAAG+AGG 0.613533 8.3:-205277 MS.gene042050:CDS
GGGAATGCCACAGATGGCTG+TGG 0.614228 8.3:-205822 MS.gene042050:CDS
TGAAGTTGAAGGCTGAGTGA+TGG 0.622721 8.3:+205676 None:intergenic
AGTTGAAGGCTGAGTGATGG+TGG 0.623553 8.3:+205679 None:intergenic
ATGGGAGGGAATGCCACAGA+TGG 0.625053 8.3:-205828 MS.gene042050:CDS
AGCTGCTGCTTGCATAGGAG+TGG 0.626710 8.3:+205953 None:intergenic
AGAAGTCCAAGGTGAGACTG+AGG 0.639644 8.3:-205715 MS.gene042050:CDS
AGCAGCTGTTAGTACTGGTG+TGG 0.641970 8.3:-205937 MS.gene042050:CDS
TTCCACAGAAAAGAAGTCCA+AGG 0.650236 8.3:-205726 MS.gene042050:CDS
TCAGAAGCAAGAGGAATCTG+TGG 0.650938 8.3:-205268 MS.gene042050:CDS
AGTTGAATGGCATGATGATG+TGG 0.657862 8.3:+205475 None:intergenic
ATGTGGCCATGTCCATGAGG+TGG 0.659218 8.3:+205492 None:intergenic
ACATGAATTTCCTCATGCTG+TGG 0.665457 8.3:+205634 None:intergenic
AATCGTCATCAGTTGTGGTG+AGG 0.674142 8.3:-205884 MS.gene042050:CDS
CTGTATTAGGAGTAGAGTGG+TGG 0.678813 8.3:+205571 None:intergenic
TGTGGTGAGTTCATGCCCAG+TGG 0.682320 8.3:-205804 MS.gene042050:CDS
GAACTCACCACAGCCATCTG+TGG 0.688684 8.3:+205815 None:intergenic
GTTCAGGACAAAATTCACAC+AGG 0.704613 8.3:-205340 MS.gene042050:CDS
ATGCTGTATTAGGAGTAGAG+TGG 0.716681 8.3:+205568 None:intergenic
ATGATGTGGCCATGTCCATG+AGG 0.730801 8.3:+205489 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATTA+TGG - chr8.3:205302-205321 MS.gene042050:CDS 0.0%
!!! AAATAATATTATTATAATTT+TGG - chr8.3:205161-205180 MS.gene042050:CDS 0.0%
!!! ATAATAATATTATTTCTTCA+TGG + chr8.3:205156-205175 None:intergenic 10.0%
!! TATTATTATTGTGGTTTATT+GGG + chr8.3:205286-205305 None:intergenic 15.0%
!! TTATTATTATTGTGGTTTAT+TGG + chr8.3:205287-205306 None:intergenic 15.0%
!! AATAATTATGGTACTAGTAA+TGG - chr8.3:205314-205333 MS.gene042050:CDS 20.0%
!! ATATAATATTACTGTGATTG+TGG + chr8.3:205403-205422 None:intergenic 20.0%
! ATTTCTTCATGGTACTAATT+TGG + chr8.3:205145-205164 None:intergenic 25.0%
!!! TTCATGTTGAAGTTGTTTTT+TGG + chr8.3:206287-206306 None:intergenic 25.0%
! TTCAATTTTGCTGAGAAAGT+TGG - chr8.3:206151-206170 MS.gene042050:intron 30.0%
!! TATAATTTTGGCACTTTGTG+TGG - chr8.3:205173-205192 MS.gene042050:CDS 30.0%
AAAATTCACACAGGAACAGA+AGG - chr8.3:206120-206139 MS.gene042050:intron 35.0%
AGTCCAAATTAAGGTAGGAA+TGG - chr8.3:205232-205251 MS.gene042050:CDS 35.0%
ATGGAAATTTCAGAAGCAAG+AGG - chr8.3:206174-206193 MS.gene042050:intron 35.0%
CTCTTCTTGTTCATCAGATT+CGG + chr8.3:206014-206033 None:intergenic 35.0%
CTTCATGGTACTAATTTGGT+TGG + chr8.3:205141-205160 None:intergenic 35.0%
GTTCCATTCCTACCTTAATT+TGG + chr8.3:205238-205257 None:intergenic 35.0%
TAGTGATGAAGAAAAGGTTC+AGG - chr8.3:206095-206114 MS.gene042050:intron 35.0%
TTATTGGGATTTCTCCATCT+TGG + chr8.3:205271-205290 None:intergenic 35.0%
! AACTGATGACGATTTCTTGT+AGG + chr8.3:205561-205580 None:intergenic 35.0%
! ATTTTGCTGAGAAAGTTGGA+TGG - chr8.3:206155-206174 MS.gene042050:intron 35.0%
! GAAGGTATGTTGTAGTTGAA+TGG + chr8.3:205992-206011 None:intergenic 35.0%
! TTCTTTTCACACCAATCTCT+TGG + chr8.3:206222-206241 None:intergenic 35.0%
!! TATGGTACTAGTAATGGACA+TGG - chr8.3:205320-205339 MS.gene042050:CDS 35.0%
AAAGAATCATGCAGCTGCAA+TGG - chr8.3:205604-205623 MS.gene042050:CDS 40.0%
AAGAATCATGCAGCTGCAAT+GGG - chr8.3:205605-205624 MS.gene042050:CDS 40.0%
ACATGAATTTCCTCATGCTG+TGG + chr8.3:205820-205839 None:intergenic 40.0%
AGGAGGTAGTGATGAAGAAA+AGG - chr8.3:206089-206108 MS.gene042050:intron 40.0%
ATGCTGTATTAGGAGTAGAG+TGG + chr8.3:205886-205905 None:intergenic 40.0%
CAAGAAATCGTCATCAGTTG+TGG - chr8.3:205562-205581 MS.gene042050:CDS 40.0%
CCTGTTGAAGTTGAAGTTGA+AGG + chr8.3:205789-205808 None:intergenic 40.0%
CCTTCAACTTCAACTTCAAC+AGG - chr8.3:205786-205805 MS.gene042050:CDS 40.0%
CGAATCTGATGAACAAGAAG+AGG - chr8.3:206012-206031 MS.gene042050:intron 40.0%
GGTGTTCATGAACATGATGA+TGG + chr8.3:205361-205380 None:intergenic 40.0%
GTTCAGGACAAAATTCACAC+AGG - chr8.3:206111-206130 MS.gene042050:intron 40.0%
TCTTGTTCATCAGATTCGGA+AGG + chr8.3:206010-206029 None:intergenic 40.0%
TGTGGAAGTTTCTGTGACAA+TGG + chr8.3:205712-205731 None:intergenic 40.0%
TTACTGTGATTGTGGTGTAG+TGG + chr8.3:205395-205414 None:intergenic 40.0%
TTCCACAGAAAAGAAGTCCA+AGG - chr8.3:205725-205744 MS.gene042050:CDS 40.0%
! AGTTGAATGGCATGATGATG+TGG + chr8.3:205979-205998 None:intergenic 40.0%
! CCATTAACTGAAGGGTTTTG+GGG + chr8.3:205473-205492 None:intergenic 40.0%
! GCCATTAACTGAAGGGTTTT+GGG + chr8.3:205474-205493 None:intergenic 40.0%
! TCCTACCTTAATTTGGACTC+TGG + chr8.3:205231-205250 None:intergenic 40.0%
! TGATGACGATTTCTTGTAGG+AGG + chr8.3:205558-205577 None:intergenic 40.0%
! TGCCATTAACTGAAGGGTTT+TGG + chr8.3:205475-205494 None:intergenic 40.0%
! TGGTTGTGCCATTAACTGAA+GGG + chr8.3:205481-205500 None:intergenic 40.0%
!! AAAGAAGAGTGCTCAAGGTT+TGG - chr8.3:206236-206255 MS.gene042050:intron 40.0%
!! TGTGAAAAGAAGAGTGCTCA+AGG - chr8.3:206231-206250 MS.gene042050:intron 40.0%
AATACAGCATCAGCAGCAAC+AGG - chr8.3:205896-205915 MS.gene042050:CDS 45.0%
AATCGTCATCAGTTGTGGTG+AGG - chr8.3:205567-205586 MS.gene042050:CDS 45.0%
AATGGTTCCTTGTTCACCAC+TGG + chr8.3:205666-205685 None:intergenic 45.0%
AGAGCAGTTGAGTGCTTCAA+TGG + chr8.3:205684-205703 None:intergenic 45.0%
ATGGTTCCTTGTTCACCACT+GGG + chr8.3:205665-205684 None:intergenic 45.0%
CAACAGTTCTGCCAAGAGAT+TGG - chr8.3:206208-206227 MS.gene042050:intron 45.0%
CATGTTACCTCTTCCTGATC+AGG - chr8.3:205835-205854 MS.gene042050:CDS 45.0%
CCCCAAAACCCTTCAGTTAA+TGG - chr8.3:205470-205489 MS.gene042050:CDS 45.0%
CTGTATTAGGAGTAGAGTGG+TGG + chr8.3:205883-205902 None:intergenic 45.0%
GAACTTTCCAACAGCCAAGA+TGG - chr8.3:205254-205273 MS.gene042050:CDS 45.0%
GAAGTTTCTGTGACAATGGC+AGG + chr8.3:205708-205727 None:intergenic 45.0%
GATTTCTCCATCTTGGCTGT+TGG + chr8.3:205264-205283 None:intergenic 45.0%
GCCAGAGTCCAAATTAAGGT+AGG - chr8.3:205227-205246 MS.gene042050:CDS 45.0%
GCTAGCCAGAGTCCAAATTA+AGG - chr8.3:205223-205242 MS.gene042050:CDS 45.0%
GTTGCTGCTGATGCTGTATT+AGG + chr8.3:205896-205915 None:intergenic 45.0%
TCAGAAGCAAGAGGAATCTG+TGG - chr8.3:206183-206202 MS.gene042050:intron 45.0%
TGAAGTTGAAGGCTGAGTGA+TGG + chr8.3:205778-205797 None:intergenic 45.0%
TGAATTTCCTCATGCTGTGG+TGG + chr8.3:205817-205836 None:intergenic 45.0%
! CACCTTGGACTTCTTTTCTG+TGG + chr8.3:205730-205749 None:intergenic 45.0%
! GGCACTTTGTGTGGTGTTTT+TGG - chr8.3:205182-205201 MS.gene042050:CDS 45.0%
! GTGGTTGTGCCATTAACTGA+AGG + chr8.3:205482-205501 None:intergenic 45.0%
! TGGCTAGCTGTTTGCTTCTT+TGG + chr8.3:205211-205230 None:intergenic 45.0%
!! TATTATTATTATTATTATTG+TGG + chr8.3:205295-205314 None:intergenic 5.0%
AATCATGCAGCTGCAATGGG+AGG - chr8.3:205608-205627 MS.gene042050:CDS 50.0%
AGAAGTCCAAGGTGAGACTG+AGG - chr8.3:205736-205755 MS.gene042050:CDS 50.0%
AGTTGAAGGCTGAGTGATGG+TGG + chr8.3:205775-205794 None:intergenic 50.0%
ATCATGCAGCTGCAATGGGA+GGG - chr8.3:205609-205628 MS.gene042050:CDS 50.0%
ATGATGTGGCCATGTCCATG+AGG + chr8.3:205965-205984 None:intergenic 50.0%
CAAGCAGCAGCTGTTAGTAC+TGG - chr8.3:205509-205528 MS.gene042050:CDS 50.0%
CTGTGATTGTGGTGTAGTGG+AGG + chr8.3:205392-205411 None:intergenic 50.0%
GATGAACAAGAAGAGGCAGC+AGG - chr8.3:206019-206038 MS.gene042050:intron 50.0%
TTCATGCCCAGTGGTGAACA+AGG - chr8.3:205656-205675 MS.gene042050:CDS 50.0%
! CTAACAGCTGCTGCTTGCAT+AGG + chr8.3:205506-205525 None:intergenic 50.0%
! TAGGAGTAGAGTGGTGGTGT+TGG + chr8.3:205877-205896 None:intergenic 50.0%
! TGATTGTGGTGTAGTGGAGG+AGG + chr8.3:205389-205408 None:intergenic 50.0%
!! AGCAGCTGTTAGTACTGGTG+TGG - chr8.3:205514-205533 MS.gene042050:CDS 50.0%
!!! TTTTGGGGTACTACTGCCAC+TGG + chr8.3:205458-205477 None:intergenic 50.0%
ATGGGAGGGAATGCCACAGA+TGG - chr8.3:205623-205642 MS.gene042050:CDS 55.0%
ATGTGGCCATGTCCATGAGG+TGG + chr8.3:205962-205981 None:intergenic 55.0%
CCAAGACCAAGAGCCTGATC+AGG + chr8.3:205851-205870 None:intergenic 55.0%
CCAAGAGCCTGATCAGGAAG+AGG + chr8.3:205845-205864 None:intergenic 55.0%
CCAAGGTGAGACTGAGGATC+AGG - chr8.3:205742-205761 MS.gene042050:CDS 55.0%
CCTCTTCCTGATCAGGCTCT+TGG - chr8.3:205842-205861 MS.gene042050:CDS 55.0%
CCTGATCAGGCTCTTGGTCT+TGG - chr8.3:205848-205867 MS.gene042050:CDS 55.0%
CCTGATCCTCAGTCTCACCT+TGG + chr8.3:205745-205764 None:intergenic 55.0%
GAACTCACCACAGCCATCTG+TGG + chr8.3:205639-205658 None:intergenic 55.0%
GGTACTACTGCCACTGGTAC+TGG + chr8.3:205452-205471 None:intergenic 55.0%
TGTGGTGAGTTCATGCCCAG+TGG - chr8.3:205647-205666 MS.gene042050:CDS 55.0%
! AGCTGCTGCTTGCATAGGAG+TGG + chr8.3:205501-205520 None:intergenic 55.0%
! GGTGTAGTGGAGGAGGATGA+GGG + chr8.3:205382-205401 None:intergenic 55.0%
! TGGTGTAGTGGAGGAGGATG+AGG + chr8.3:205383-205402 None:intergenic 55.0%
!! CACTGGTACTGGCACTACTG+CGG + chr8.3:205441-205460 None:intergenic 55.0%
AGAGCTGTAGCGCCACCTCA+TGG - chr8.3:205947-205966 MS.gene042050:CDS 60.0%
CGCAGTAGTGCCAGTACCAG+TGG - chr8.3:205439-205458 MS.gene042050:CDS 60.0%
GGGAATGCCACAGATGGCTG+TGG - chr8.3:205629-205648 MS.gene042050:CDS 60.0%
GTAGCGCCACCTCATGGACA+TGG - chr8.3:205953-205972 MS.gene042050:CDS 60.0%
!! GGTGGCGCTACAGCTCTAGA+AGG + chr8.3:205944-205963 None:intergenic 60.0%
GGCAGCACCACCACAGCATG+AGG - chr8.3:205807-205826 MS.gene042050:CDS 65.0%
GCAGCAGCAGCAGCAGCAGC+AGG - chr8.3:206069-206088 MS.gene042050:intron 70.0%
GCAGCAGCAGCAGCAGCAGG+AGG - chr8.3:206072-206091 MS.gene042050:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 205122 206351 205122 ID=MS.gene042050
chr8.3 mRNA 205122 206351 205122 ID=MS.gene042050.t1;Parent=MS.gene042050
chr8.3 exon 206339 206351 206339 ID=MS.gene042050.t1.exon1;Parent=MS.gene042050.t1
chr8.3 CDS 206339 206351 206339 ID=cds.MS.gene042050.t1;Parent=MS.gene042050.t1
chr8.3 exon 205122 206029 205122 ID=MS.gene042050.t1.exon2;Parent=MS.gene042050.t1
chr8.3 CDS 205122 206029 205122 ID=cds.MS.gene042050.t1;Parent=MS.gene042050.t1
Gene Sequence

>MS.gene042050

ATGTTAATTGAAGGTTCCAACCAAATTAGTACCATGAAGAAATAATATTATTATAATTTTGGCACTTTGTGTGGTGTTTTTGGTCTCCAAAGAAGCAAACAGCTAGCCAGAGTCCAAATTAAGGTAGGAATGGAACTTTCCAACAGCCAAGATGGAGAAATCCCAATAAACCACAATAATAATAATAATAATAATAATTATGGTACTAGTAATGGACATGGTCATCACATGATTCACCATCATCATGTTCATGAACACCCTCATCCTCCTCCACTACACCACAATCACAGTAATATTATATCATCATCATCTTCAGCCGCAGTAGTGCCAGTACCAGTGGCAGTAGTACCCCAAAACCCTTCAGTTAATGGCACAACCACTCCTATGCAAGCAGCAGCTGTTAGTACTGGTGTGGAATTAGATCATGATCAGTCCTCCTACAAGAAATCGTCATCAGTTGTGGTGAGGTACAGAGAATGTCTAAAGAATCATGCAGCTGCAATGGGAGGGAATGCCACAGATGGCTGTGGTGAGTTCATGCCCAGTGGTGAACAAGGAACCATTGAAGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTCCAAGGTGAGACTGAGGATCAGGAAAACTACCACCATCACTCAGCCTTCAACTTCAACTTCAACAGGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAGGCTCTTGGTCTTGGCTACCAACACCACCACTCTACTCCTAATACAGCATCAGCAGCAACAGGTAACAACAACAACAACATTCTTCCTTCTAGAGCTGTAGCGCCACCTCATGGACATGGCCACATCATCATGCCATTCAACTACAACATACCTTCCGAATCTGATGAACAAGAAGAGGCAGCAGGTAGACTACATATTCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGGAGGTAGTGATGAAGAAAAGGTTCAGGACAAAATTCACACAGGAACAGAAGGACAAAATGTTCAATTTTGCTGAGAAAGTTGGATGGAAATTTCAGAAGCAAGAGGAATCTGTGGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAACTTCAACATGAACATATTACTGCTAGTGCTAGTGCTAATCATCTCCCAACTCCATAA
Protein sequence

>MS.gene042050.t1

MLIEVVPVPVAVVPQNPSVNGTTTPMQAAAVSTGVELDHDQSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVQGETEDQENYHHHSAFNFNFNRQHHHSMRKFMLPLPDQALGLGYQHHHSTPNTASAATGNNNNNILPSRAVAPPHGHGHIIMPFNYNIPSESDEQEEAAGRLHIHHHHQQQQQQQQEVVMKKRFRTKFTQEQKDKMFNFAEKVGWKFQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQHEHITASASANHLPTP