Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044452.t1 | XP_013457996.1 | 95.4 | 452 | 18 | 1 | 1 | 449 | 167 | 618 | 3.80E-245 | 857.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044452.t1 | Q9SD82 | 73.2 | 447 | 117 | 1 | 1 | 444 | 153 | 599 | 1.6e-191 | 670.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044452.t1 | A0A072UQS0 | 95.4 | 452 | 18 | 1 | 1 | 449 | 167 | 618 | 2.7e-245 | 857.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene044452 | MS.gene070665 | PPI |
| MS.gene044452 | MS.gene051178 | PPI |
| MS.gene044452 | MS.gene64415 | PPI |
| MS.gene044452 | MS.gene025201 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044452.t1 | MTR_4g109580 | 94.027 | 452 | 24 | 1 | 1 | 449 | 167 | 618 | 0.0 | 877 |
| MS.gene044452.t1 | MTR_4g109580 | 95.855 | 386 | 13 | 1 | 1 | 383 | 167 | 552 | 0.0 | 769 |
| MS.gene044452.t1 | MTR_4g109590 | 63.571 | 280 | 67 | 3 | 170 | 440 | 10 | 263 | 6.44e-113 | 333 |
| MS.gene044452.t1 | MTR_2g041270 | 36.142 | 451 | 273 | 7 | 4 | 445 | 180 | 624 | 4.14e-97 | 305 |
| MS.gene044452.t1 | MTR_3g047950 | 33.621 | 464 | 273 | 9 | 7 | 445 | 129 | 582 | 1.47e-76 | 255 |
| MS.gene044452.t1 | MTR_4g070090 | 24.058 | 345 | 242 | 10 | 74 | 409 | 94 | 427 | 1.16e-17 | 85.5 |
| MS.gene044452.t1 | MTR_1g095050 | 49.038 | 104 | 28 | 4 | 342 | 445 | 76 | 154 | 1.67e-17 | 80.1 |
| MS.gene044452.t1 | MTR_5g027390 | 23.768 | 345 | 243 | 10 | 74 | 409 | 62 | 395 | 3.30e-17 | 84.0 |
| MS.gene044452.t1 | MTR_8g062030 | 22.459 | 423 | 311 | 12 | 18 | 433 | 18 | 430 | 1.06e-14 | 76.6 |
| MS.gene044452.t1 | MTR_5g078250 | 21.792 | 413 | 296 | 14 | 17 | 418 | 17 | 413 | 2.19e-13 | 72.4 |
| MS.gene044452.t1 | MTR_0030s0160 | 36.782 | 87 | 55 | 0 | 20 | 106 | 48 | 134 | 4.80e-13 | 66.6 |
| MS.gene044452.t1 | MTR_2g048560 | 24.346 | 382 | 260 | 15 | 1 | 370 | 1 | 365 | 1.62e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene044452.t1 | AT5G08020 | 73.154 | 447 | 117 | 1 | 1 | 444 | 153 | 599 | 0.0 | 705 |
| MS.gene044452.t1 | AT5G61000 | 70.404 | 446 | 129 | 1 | 1 | 443 | 177 | 622 | 0.0 | 659 |
| MS.gene044452.t1 | AT2G06510 | 37.168 | 452 | 258 | 8 | 4 | 440 | 173 | 613 | 1.75e-94 | 297 |
| MS.gene044452.t1 | AT2G06510 | 37.168 | 452 | 258 | 8 | 4 | 440 | 196 | 636 | 3.10e-94 | 297 |
| MS.gene044452.t1 | AT5G45400 | 33.921 | 454 | 277 | 9 | 4 | 445 | 298 | 740 | 3.43e-85 | 278 |
| MS.gene044452.t1 | AT4G19130 | 32.379 | 454 | 285 | 8 | 4 | 445 | 227 | 670 | 3.83e-82 | 269 |
| MS.gene044452.t1 | AT4G19130 | 32.379 | 454 | 285 | 8 | 4 | 445 | 228 | 671 | 4.56e-82 | 269 |
| MS.gene044452.t1 | AT1G52950 | 24.173 | 393 | 268 | 12 | 10 | 387 | 12 | 389 | 6.03e-19 | 89.7 |
Find 106 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTCATTGAATCCTTATA+TGG | 0.197715 | 8.1:-16051418 | MS.gene044452:CDS |
| TTTCTTGTTACAAGTCTTAC+AGG | 0.219764 | 8.1:+16049832 | None:intergenic |
| ATGATGCAGAGTGCAATTTA+AGG | 0.233355 | 8.1:-16049760 | MS.gene044452:intron |
| TGCTTCTCTCAGATATATTA+TGG | 0.254112 | 8.1:-16049668 | MS.gene044452:intron |
| CATAATCTCTAACCTCTCTT+TGG | 0.255888 | 8.1:-16050154 | MS.gene044452:CDS |
| TTCTGAGCTTCAGGTACTTC+TGG | 0.263034 | 8.1:+16050377 | None:intergenic |
| TTCTCCTCTAGCATTCTTAT+AGG | 0.277778 | 8.1:+16051347 | None:intergenic |
| TATGGGTGGTTGGACAATTA+AGG | 0.301499 | 8.1:-16051400 | MS.gene044452:CDS |
| TTCTTCAATTTCATTGCATA+TGG | 0.303793 | 8.1:+16049433 | None:intergenic |
| ATAATCTCTAACCTCTCTTT+GGG | 0.327179 | 8.1:-16050153 | MS.gene044452:CDS |
| CATCTAAGCTTCTGAGCTTC+AGG | 0.333280 | 8.1:+16050368 | None:intergenic |
| TAACATAGGACAGGAGTTAC+TGG | 0.343112 | 8.1:-16050594 | MS.gene044452:CDS |
| TAAGGACCCAACTGATCAAT+TGG | 0.356032 | 8.1:+16050957 | None:intergenic |
| AATATGTTACCTGTGATCTA+AGG | 0.360393 | 8.1:+16049548 | None:intergenic |
| CAATCAAATCCCTCAAGGTT+GGG | 0.377883 | 8.1:-16050544 | MS.gene044452:CDS |
| ATTGTCCAACCACCCATATA+AGG | 0.383621 | 8.1:+16051405 | None:intergenic |
| TATAAGCAGAAGTTTAGTTC+TGG | 0.404383 | 8.1:-16050405 | MS.gene044452:CDS |
| TGAGAATTCTGAGGTGGAAG+AGG | 0.406547 | 8.1:-16051027 | MS.gene044452:CDS |
| GTTTCATTGAATCCTTATAT+GGG | 0.408021 | 8.1:-16051417 | MS.gene044452:CDS |
| GACTCAACAGCAAAGTCAAC+AGG | 0.409674 | 8.1:+16049316 | None:intergenic |
| AGGGATTTGATTGCAACTAC+TGG | 0.411153 | 8.1:+16050554 | None:intergenic |
| CTTCTCAGCTTCCTCATTGA+AGG | 0.411504 | 8.1:+16049603 | None:intergenic |
| GTTACTGAAGGCATGGATGC+TGG | 0.424225 | 8.1:-16049809 | MS.gene044452:CDS |
| CTCAAGGTTGGGGACTTTCA+AGG | 0.429156 | 8.1:-16050533 | MS.gene044452:intron |
| GACAGTTGTTGTGTCTTTGT+GGG | 0.429359 | 8.1:-16050630 | MS.gene044452:CDS |
| GAGGAAGCTGAGAAGATCAT+TGG | 0.434148 | 8.1:-16049595 | MS.gene044452:CDS |
| ACAAAATTGAATTTAGTCTC+TGG | 0.444756 | 8.1:+16050981 | None:intergenic |
| TTGAAAGTCCCCAACCTTGA+GGG | 0.451574 | 8.1:+16050535 | None:intergenic |
| AGGGAATATCAGTTTCATAA+AGG | 0.460918 | 8.1:-16049879 | MS.gene044452:CDS |
| TTAGAGATTATGTAAGAAAG+TGG | 0.462179 | 8.1:+16050165 | None:intergenic |
| AAAGGTGTATTACATTTCAA+AGG | 0.473267 | 8.1:-16051114 | MS.gene044452:CDS |
| GTTTCTCAGAATGAGTATAA+TGG | 0.476325 | 8.1:-16049376 | MS.gene044452:CDS |
| GTGAATAAGTCTGAGCTTGT+TGG | 0.477386 | 8.1:-16050933 | MS.gene044452:intron |
| TCATCTTTGATATGTCTTCA+AGG | 0.477534 | 8.1:+16049284 | None:intergenic |
| TTTGTCCCAATTGATCAGTT+GGG | 0.477880 | 8.1:-16050963 | MS.gene044452:CDS |
| GCAATGGCTGCTATAAGCTC+TGG | 0.485853 | 8.1:-16050231 | MS.gene044452:CDS |
| CAGGTATGATTCTGAAGGTA+AGG | 0.487935 | 8.1:-16050259 | MS.gene044452:CDS |
| TTGTGGATTTCAGATGTTGT+TGG | 0.488059 | 8.1:-16050839 | MS.gene044452:intron |
| AAGGTGTATTACATTTCAAA+GGG | 0.499295 | 8.1:-16051113 | MS.gene044452:CDS |
| AAACAAGAGGACGCACTCTA+CGG | 0.504809 | 8.1:+16051436 | None:intergenic |
| AAGGCATGGATGCTGGGTAC+TGG | 0.505885 | 8.1:-16049802 | MS.gene044452:CDS |
| GCAATGGTAAGGTCACGCTT+TGG | 0.506803 | 8.1:+16050755 | None:intergenic |
| AGGCACGATACCACATTGCC+TGG | 0.506974 | 8.1:+16049852 | None:intergenic |
| CACTGACCCGCATGAGGTGT+GGG | 0.508477 | 8.1:+16049398 | None:intergenic |
| GCAATCAAATCCCTCAAGGT+TGG | 0.512201 | 8.1:-16050545 | MS.gene044452:CDS |
| TGAATCCTTATATGGGTGGT+TGG | 0.515466 | 8.1:-16051410 | MS.gene044452:CDS |
| AGGAAGCTGAGAAGATCATT+GGG | 0.518920 | 8.1:-16049594 | MS.gene044452:CDS |
| CAGTTTCATAAAGGCAGACC+AGG | 0.520348 | 8.1:-16049870 | MS.gene044452:CDS |
| CAAGAAAGTTACTGAAGGCA+TGG | 0.521213 | 8.1:-16049816 | MS.gene044452:CDS |
| AATCAAATCCCTCAAGGTTG+GGG | 0.530198 | 8.1:-16050543 | MS.gene044452:CDS |
| AGGTTGTCTAGCTCCTCAGC+AGG | 0.530551 | 8.1:+16049568 | None:intergenic |
| AGACAGTTGTTGTGTCTTTG+TGG | 0.531748 | 8.1:-16050631 | MS.gene044452:CDS |
| TTACTGAAGGCATGGATGCT+GGG | 0.532866 | 8.1:-16049808 | MS.gene044452:CDS |
| TGACAAATTTGCTATTGGAA+AGG | 0.535371 | 8.1:-16051132 | MS.gene044452:CDS |
| TATAAGAATGCTAGAGGAGA+AGG | 0.536211 | 8.1:-16051345 | MS.gene044452:CDS |
| CCTGCATTCTTTAGCATCAG+AGG | 0.538743 | 8.1:-16049899 | MS.gene044452:CDS |
| CACTAACGTTTCATCGGCAA+TGG | 0.542014 | 8.1:+16050739 | None:intergenic |
| AACAAGAGGACGCACTCTAC+GGG | 0.544609 | 8.1:+16051437 | None:intergenic |
| TGGAACAAAAGCAGCTTCGT+TGG | 0.545620 | 8.1:+16051001 | None:intergenic |
| ACGTTTCATCGGCAATGGTA+AGG | 0.548780 | 8.1:+16050744 | None:intergenic |
| AAGGTCAGTGTTACAAGCAA+AGG | 0.549736 | 8.1:-16051381 | MS.gene044452:CDS |
| GGAAAACACTAACGTTTCAT+CGG | 0.552747 | 8.1:+16050733 | None:intergenic |
| CCTCTGATGCTAAAGAATGC+AGG | 0.557634 | 8.1:+16049899 | None:intergenic |
| AGCTCAGACTTATTCACGTA+AGG | 0.558049 | 8.1:+16050939 | None:intergenic |
| ACACTGACCCGCATGAGGTG+TGG | 0.562389 | 8.1:+16049397 | None:intergenic |
| GAGGCAAAGGATAACAGCAC+GGG | 0.565635 | 8.1:-16049347 | MS.gene044452:CDS |
| AAGGACCCAACTGATCAATT+GGG | 0.566726 | 8.1:+16050958 | None:intergenic |
| GATCATTGGGTGCCCTGCTG+AGG | 0.568430 | 8.1:-16049581 | MS.gene044452:CDS |
| CTGCATTCTTTAGCATCAGA+GGG | 0.571606 | 8.1:-16049898 | MS.gene044452:CDS |
| TGAAGGTAAGGATGCTGCAA+TGG | 0.572865 | 8.1:-16050247 | MS.gene044452:CDS |
| AGGACGCACTCTACGGGTCA+TGG | 0.574071 | 8.1:+16051443 | None:intergenic |
| CTTGAAAGTCCCCAACCTTG+AGG | 0.582902 | 8.1:+16050534 | None:intergenic |
| AAGCTCAGAAGCTTAGATGC+TGG | 0.583937 | 8.1:-16050364 | MS.gene044452:intron |
| TGAAATTGAAGAAAGCTACA+TGG | 0.585121 | 8.1:-16049423 | MS.gene044452:CDS |
| TCATTGAATCCTTATATGGG+TGG | 0.585863 | 8.1:-16051414 | MS.gene044452:CDS |
| GCTAGACAACCTTAGATCAC+AGG | 0.586366 | 8.1:-16049557 | MS.gene044452:intron |
| ACAGTTGTTGTGTCTTTGTG+GGG | 0.589518 | 8.1:-16050629 | MS.gene044452:CDS |
| GGTGATCTTGCAACTAACAT+AGG | 0.591539 | 8.1:-16050608 | MS.gene044452:CDS |
| AGCATTTCCATCTTAATGAG+AGG | 0.596064 | 8.1:+16049258 | None:intergenic |
| ATAATGGTGAGAAGAGGCAA+AGG | 0.598574 | 8.1:-16049360 | MS.gene044452:CDS |
| CATGGATCCCACACCTCATG+CGG | 0.599390 | 8.1:-16049405 | MS.gene044452:CDS |
| TAATCTCTAACCTCTCTTTG+GGG | 0.600014 | 8.1:-16050152 | MS.gene044452:CDS |
| ACTTCTGCTTATAGCTGACA+AGG | 0.602200 | 8.1:+16050415 | None:intergenic |
| TTTCATATCTACCTTCAATG+AGG | 0.604303 | 8.1:-16049614 | MS.gene044452:CDS |
| ATGGATCCCACACCTCATGC+GGG | 0.605380 | 8.1:-16049404 | MS.gene044452:CDS |
| AGTTGCAATCAAATCCCTCA+AGG | 0.605904 | 8.1:-16050549 | MS.gene044452:CDS |
| TAAGGATTCAATGAAACAAG+AGG | 0.605943 | 8.1:+16051423 | None:intergenic |
| TCTTGCAACTAACATAGGAC+AGG | 0.607921 | 8.1:-16050603 | MS.gene044452:CDS |
| GCAAAAGTTTCTGATGCAAG+TGG | 0.612135 | 8.1:-16049643 | MS.gene044452:CDS |
| CTATGTTTAATGATGCTGCA+AGG | 0.619587 | 8.1:-16051163 | MS.gene044452:CDS |
| AGAGGCAAAGGATAACAGCA+CGG | 0.619881 | 8.1:-16049348 | MS.gene044452:CDS |
| ATGAGTATAATGGTGAGAAG+AGG | 0.622179 | 8.1:-16049366 | MS.gene044452:CDS |
| CGTACCTATAAGAATGCTAG+AGG | 0.624902 | 8.1:-16051351 | MS.gene044452:CDS |
| AGTTTCTGATGCAAGTGGCG+AGG | 0.634296 | 8.1:-16049638 | MS.gene044452:CDS |
| GGTTGCAGGTATGATTCTGA+AGG | 0.635243 | 8.1:-16050264 | MS.gene044452:intron |
| GGTTGTCTAGCTCCTCAGCA+GGG | 0.637218 | 8.1:+16049569 | None:intergenic |
| GAGAAACACTGACCCGCATG+AGG | 0.638609 | 8.1:+16049392 | None:intergenic |
| AGGACAGGAGTTACTGGACA+TGG | 0.639620 | 8.1:-16050588 | MS.gene044452:CDS |
| TGTAACAAGAAAGTTACTGA+AGG | 0.642106 | 8.1:-16049821 | MS.gene044452:CDS |
| AATCTCTAACCTCTCTTTGG+GGG | 0.659951 | 8.1:-16050151 | MS.gene044452:CDS |
| GACATTGAATGAGAATTCTG+AGG | 0.676639 | 8.1:-16051036 | MS.gene044452:CDS |
| ATTGAATGAGAATTCTGAGG+TGG | 0.678946 | 8.1:-16051033 | MS.gene044452:CDS |
| TAAAGGCAGACCAGGCAATG+TGG | 0.694072 | 8.1:-16049862 | MS.gene044452:CDS |
| TAACAAACAGTACAAAACTG+TGG | 0.704421 | 8.1:-16051075 | MS.gene044452:CDS |
| TTATGTAAGAAAGTGGAACA+CGG | 0.704808 | 8.1:+16050172 | None:intergenic |
| TCTTTGATATGTCTTCAAGG+AGG | 0.723926 | 8.1:+16049287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATAATTTTTAATTTTC+TGG | - | chr8.1:16050650-16050669 | MS.gene044452:intron | 10.0% |
| !!! | TTTATTCTGTTATTTTTTTT+AGG | - | chr8.1:16051241-16051260 | MS.gene044452:intron | 10.0% |
| !!! | TTTTTTTTTAAATGTTGTTT+TGG | - | chr8.1:16049452-16049471 | MS.gene044452:intron | 10.0% |
| !! | ATTCTCAAACATTAAAATAA+TGG | + | chr8.1:16051194-16051213 | None:intergenic | 15.0% |
| !! | TTTGCAAGAATTAAAAAAAT+TGG | + | chr8.1:16050729-16050748 | None:intergenic | 15.0% |
| !!! | TTTGTTTTGAAATATTTTCA+GGG | - | chr8.1:16049508-16049527 | MS.gene044452:intron | 15.0% |
| !!! | TTTTGTTTTGAAATATTTTC+AGG | - | chr8.1:16049507-16049526 | MS.gene044452:intron | 15.0% |
| !! | AGAATAAATTTAATGCCAAT+TGG | + | chr8.1:16051229-16051248 | None:intergenic | 20.0% |
| !! | ATCATAGACTTAACATAAAA+AGG | + | chr8.1:16050401-16050420 | None:intergenic | 20.0% |
| !! | TCATAGACTTAACATAAAAA+GGG | + | chr8.1:16050400-16050419 | None:intergenic | 20.0% |
| !! | TTAATTCTTGCAAATTACAA+TGG | - | chr8.1:16050735-16050754 | MS.gene044452:intron | 20.0% |
| !!! | ACTACATTTTTTTTTCTTTC+TGG | - | chr8.1:16050604-16050623 | MS.gene044452:CDS | 20.0% |
| !!! | ATATTTATCTGTTTTTCATC+TGG | - | chr8.1:16050425-16050444 | MS.gene044452:intron | 20.0% |
| !!! | ATCTTATTGTTTATTTGTTG+TGG | - | chr8.1:16049855-16049874 | MS.gene044452:CDS | 20.0% |
| !!! | TATTTATCTGTTTTTCATCT+GGG | - | chr8.1:16050426-16050445 | MS.gene044452:intron | 20.0% |
| !!! | TGTTTTGGTTTTTAAGTTTA+GGG | - | chr8.1:16049467-16049486 | MS.gene044452:intron | 20.0% |
| !!! | TTCTGTTATTTTTTTTAGGA+TGG | - | chr8.1:16051245-16051264 | MS.gene044452:intron | 20.0% |
| !!! | TTGTTTTGGTTTTTAAGTTT+AGG | - | chr8.1:16049466-16049485 | MS.gene044452:intron | 20.0% |
| !!! | TTTTATGACAAATTTGCTAT+TGG | - | chr8.1:16049574-16049593 | MS.gene044452:CDS | 20.0% |
| ! | AAGGTGTATTACATTTCAAA+GGG | - | chr8.1:16049598-16049617 | MS.gene044452:CDS | 25.0% |
| ! | ACAAAATTGAATTTAGTCTC+TGG | + | chr8.1:16049733-16049752 | None:intergenic | 25.0% |
| ! | GTTTCATTGAATCCTTATAT+GGG | - | chr8.1:16049294-16049313 | MS.gene044452:CDS | 25.0% |
| ! | TGTTTCATTGAATCCTTATA+TGG | - | chr8.1:16049293-16049312 | MS.gene044452:CDS | 25.0% |
| ! | TTAGAGATTATGTAAGAAAG+TGG | + | chr8.1:16050549-16050568 | None:intergenic | 25.0% |
| ! | TTCTTCAATTTCATTGCATA+TGG | + | chr8.1:16051281-16051300 | None:intergenic | 25.0% |
| !! | AAAGGTGTATTACATTTCAA+AGG | - | chr8.1:16049597-16049616 | MS.gene044452:CDS | 25.0% |
| !!! | GTTTTGGTTTTTAAGTTTAG+GGG | - | chr8.1:16049468-16049487 | MS.gene044452:intron | 25.0% |
| !!! | TTTCATTGTTGCTTTTTCTT+CGG | + | chr8.1:16049931-16049950 | None:intergenic | 25.0% |
| !!! | TTTTGGTTTTTAAGTTTAGG+GGG | - | chr8.1:16049469-16049488 | MS.gene044452:intron | 25.0% |
| AAAAAGGGAACAATAACCTA+GGG | + | chr8.1:16050385-16050404 | None:intergenic | 30.0% | |
| AAATTTAATGCCAATTGGCA+TGG | + | chr8.1:16051224-16051243 | None:intergenic | 30.0% | |
| AATATGTTACCTGTGATCTA+AGG | + | chr8.1:16051166-16051185 | None:intergenic | 30.0% | |
| AGGGAATATCAGTTTCATAA+AGG | - | chr8.1:16050832-16050851 | MS.gene044452:intron | 30.0% | |
| ATAATCTCTAACCTCTCTTT+GGG | - | chr8.1:16050558-16050577 | MS.gene044452:CDS | 30.0% | |
| ATGTAACTGTTCCAATTAAC+TGG | - | chr8.1:16050976-16050995 | MS.gene044452:CDS | 30.0% | |
| CTACAAAACTACCAGTTAAT+TGG | + | chr8.1:16050990-16051009 | None:intergenic | 30.0% | |
| GTTTCTCAGAATGAGTATAA+TGG | - | chr8.1:16051335-16051354 | MS.gene044452:CDS | 30.0% | |
| TAAAAAGGGAACAATAACCT+AGG | + | chr8.1:16050386-16050405 | None:intergenic | 30.0% | |
| TAACAAACAGTACAAAACTG+TGG | - | chr8.1:16049636-16049655 | MS.gene044452:CDS | 30.0% | |
| TAAGGATTCAATGAAACAAG+AGG | + | chr8.1:16049291-16049310 | None:intergenic | 30.0% | |
| TCATCTTTGATATGTCTTCA+AGG | + | chr8.1:16051430-16051449 | None:intergenic | 30.0% | |
| TGAAATTGAAGAAAGCTACA+TGG | - | chr8.1:16051288-16051307 | MS.gene044452:intron | 30.0% | |
| TGCTTCTCTCAGATATATTA+TGG | - | chr8.1:16051043-16051062 | MS.gene044452:CDS | 30.0% | |
| TGTAACAAGAAAGTTACTGA+AGG | - | chr8.1:16050890-16050909 | MS.gene044452:intron | 30.0% | |
| TTAGATCACAGGTAACATAT+TGG | - | chr8.1:16051165-16051184 | MS.gene044452:CDS | 30.0% | |
| TTATGTAAGAAAGTGGAACA+CGG | + | chr8.1:16050542-16050561 | None:intergenic | 30.0% | |
| TTTCATATCTACCTTCAATG+AGG | - | chr8.1:16051097-16051116 | MS.gene044452:CDS | 30.0% | |
| TTTCTTGTTACAAGTCTTAC+AGG | + | chr8.1:16050882-16050901 | None:intergenic | 30.0% | |
| ! | TATAAGCAGAAGTTTAGTTC+TGG | - | chr8.1:16050306-16050325 | MS.gene044452:intron | 30.0% |
| !! | TGACAAATTTGCTATTGGAA+AGG | - | chr8.1:16049579-16049598 | MS.gene044452:CDS | 30.0% |
| AAAAGGGAACAATAACCTAG+GGG | + | chr8.1:16050384-16050403 | None:intergenic | 35.0% | |
| AACTGACTGATGAAGATGTA+AGG | - | chr8.1:16049406-16049425 | MS.gene044452:CDS | 35.0% | |
| AATGAATCATCCATGCCAAT+TGG | - | chr8.1:16051211-16051230 | MS.gene044452:intron | 35.0% | |
| ATGAGTATAATGGTGAGAAG+AGG | - | chr8.1:16051345-16051364 | MS.gene044452:CDS | 35.0% | |
| ATGATGCAGAGTGCAATTTA+AGG | - | chr8.1:16050951-16050970 | MS.gene044452:CDS | 35.0% | |
| CATAATCTCTAACCTCTCTT+TGG | - | chr8.1:16050557-16050576 | MS.gene044452:CDS | 35.0% | |
| CCTAACACTGTAAAAGAGAA+TGG | + | chr8.1:16050002-16050021 | None:intergenic | 35.0% | |
| CTATGTTTAATGATGCTGCA+AGG | - | chr8.1:16049548-16049567 | MS.gene044452:intron | 35.0% | |
| GACATTGAATGAGAATTCTG+AGG | - | chr8.1:16049675-16049694 | MS.gene044452:intron | 35.0% | |
| GGAAAACACTAACGTTTCAT+CGG | + | chr8.1:16049981-16050000 | None:intergenic | 35.0% | |
| GTTGCTAAGATAGTTTCAAC+TGG | - | chr8.1:16050674-16050693 | MS.gene044452:intron | 35.0% | |
| TAATCTCTAACCTCTCTTTG+GGG | - | chr8.1:16050559-16050578 | MS.gene044452:CDS | 35.0% | |
| TATAAGAATGCTAGAGGAGA+AGG | - | chr8.1:16049366-16049385 | MS.gene044452:CDS | 35.0% | |
| TCATTGAATCCTTATATGGG+TGG | - | chr8.1:16049297-16049316 | MS.gene044452:CDS | 35.0% | |
| TCTTTGATATGTCTTCAAGG+AGG | + | chr8.1:16051427-16051446 | None:intergenic | 35.0% | |
| TTCTCCTCTAGCATTCTTAT+AGG | + | chr8.1:16049367-16049386 | None:intergenic | 35.0% | |
| TTGCTGCAATGTCAATCATA+GGG | + | chr8.1:16050058-16050077 | None:intergenic | 35.0% | |
| TTGTGGATTTCAGATGTTGT+TGG | - | chr8.1:16049872-16049891 | MS.gene044452:CDS | 35.0% | |
| TTTGTCCCAATTGATCAGTT+GGG | - | chr8.1:16049748-16049767 | MS.gene044452:intron | 35.0% | |
| ! | ATTGAATGAGAATTCTGAGG+TGG | - | chr8.1:16049678-16049697 | MS.gene044452:intron | 35.0% |
| ! | CCATTCTCTTTTACAGTGTT+AGG | - | chr8.1:16049999-16050018 | MS.gene044452:intron | 35.0% |
| ! | GATGTAAGGAACACACTTTT+TGG | - | chr8.1:16049420-16049439 | MS.gene044452:CDS | 35.0% |
| ! | TTTTGTCCCAATTGATCAGT+TGG | - | chr8.1:16049747-16049766 | MS.gene044452:intron | 35.0% |
| AACAATAACCTAGGGGACAA+TGG | + | chr8.1:16050377-16050396 | None:intergenic | 40.0% | |
| AAGGACCCAACTGATCAATT+GGG | + | chr8.1:16049756-16049775 | None:intergenic | 40.0% | |
| AAGGTCAGTGTTACAAGCAA+AGG | - | chr8.1:16049330-16049349 | MS.gene044452:CDS | 40.0% | |
| AATCAAATCCCTCAAGGTTG+GGG | - | chr8.1:16050168-16050187 | MS.gene044452:CDS | 40.0% | |
| AATCTCTAACCTCTCTTTGG+GGG | - | chr8.1:16050560-16050579 | MS.gene044452:CDS | 40.0% | |
| ACAGTTGTTGTGTCTTTGTG+GGG | - | chr8.1:16050082-16050101 | MS.gene044452:intron | 40.0% | |
| ACTTCTGCTTATAGCTGACA+AGG | + | chr8.1:16050299-16050318 | None:intergenic | 40.0% | |
| AGACAGTTGTTGTGTCTTTG+TGG | - | chr8.1:16050080-16050099 | MS.gene044452:intron | 40.0% | |
| AGCTCAGACTTATTCACGTA+AGG | + | chr8.1:16049775-16049794 | None:intergenic | 40.0% | |
| AGGAAGCTGAGAAGATCATT+GGG | - | chr8.1:16051117-16051136 | MS.gene044452:CDS | 40.0% | |
| AGGGATTTGATTGCAACTAC+TGG | + | chr8.1:16050160-16050179 | None:intergenic | 40.0% | |
| AGTTGCAATCAAATCCCTCA+AGG | - | chr8.1:16050162-16050181 | MS.gene044452:CDS | 40.0% | |
| ATAATGGTGAGAAGAGGCAA+AGG | - | chr8.1:16051351-16051370 | MS.gene044452:CDS | 40.0% | |
| ATTGTCCAACCACCCATATA+AGG | + | chr8.1:16049309-16049328 | None:intergenic | 40.0% | |
| CAAGAAAGTTACTGAAGGCA+TGG | - | chr8.1:16050895-16050914 | MS.gene044452:intron | 40.0% | |
| CAATCAAATCCCTCAAGGTT+GGG | - | chr8.1:16050167-16050186 | MS.gene044452:CDS | 40.0% | |
| CGTACCTATAAGAATGCTAG+AGG | - | chr8.1:16049360-16049379 | MS.gene044452:CDS | 40.0% | |
| CTGCATTCTTTAGCATCAGA+GGG | - | chr8.1:16050813-16050832 | MS.gene044452:CDS | 40.0% | |
| CTTGCTGCAATGTCAATCAT+AGG | + | chr8.1:16050059-16050078 | None:intergenic | 40.0% | |
| GACAGTTGTTGTGTCTTTGT+GGG | - | chr8.1:16050081-16050100 | MS.gene044452:intron | 40.0% | |
| GCAAAAGTTTCTGATGCAAG+TGG | - | chr8.1:16051068-16051087 | MS.gene044452:CDS | 40.0% | |
| GGTGATCTTGCAACTAACAT+AGG | - | chr8.1:16050103-16050122 | MS.gene044452:intron | 40.0% | |
| GTGAATAAGTCTGAGCTTGT+TGG | - | chr8.1:16049778-16049797 | MS.gene044452:CDS | 40.0% | |
| TAACATAGGACAGGAGTTAC+TGG | - | chr8.1:16050117-16050136 | MS.gene044452:intron | 40.0% | |
| TAAGGACCCAACTGATCAAT+TGG | + | chr8.1:16049757-16049776 | None:intergenic | 40.0% | |
| TATGGGTGGTTGGACAATTA+AGG | - | chr8.1:16049311-16049330 | MS.gene044452:CDS | 40.0% | |
| TCTGAGAGAAGCAATCTGAA+AGG | + | chr8.1:16051036-16051055 | None:intergenic | 40.0% | |
| TCTTGCAACTAACATAGGAC+AGG | - | chr8.1:16050108-16050127 | MS.gene044452:intron | 40.0% | |
| TGAATCCTTATATGGGTGGT+TGG | - | chr8.1:16049301-16049320 | MS.gene044452:CDS | 40.0% | |
| ! | CAGGTATGATTCTGAAGGTA+AGG | - | chr8.1:16050452-16050471 | MS.gene044452:intron | 40.0% |
| ! | TGCTGAATGTTTTCTGTGTC+AGG | - | chr8.1:16050268-16050287 | MS.gene044452:intron | 40.0% |
| !! | TGCACTCTGCATCATTTTTC+TGG | + | chr8.1:16050946-16050965 | None:intergenic | 40.0% |
| AAACAAGAGGACGCACTCTA+CGG | + | chr8.1:16049278-16049297 | None:intergenic | 45.0% | |
| AAGCTCAGAAGCTTAGATGC+TGG | - | chr8.1:16050347-16050366 | MS.gene044452:intron | 45.0% | |
| ACGTTTCATCGGCAATGGTA+AGG | + | chr8.1:16049970-16049989 | None:intergenic | 45.0% | |
| AGAGGCAAAGGATAACAGCA+CGG | - | chr8.1:16051363-16051382 | MS.gene044452:CDS | 45.0% | |
| CACTAACGTTTCATCGGCAA+TGG | + | chr8.1:16049975-16049994 | None:intergenic | 45.0% | |
| CAGTTTCATAAAGGCAGACC+AGG | - | chr8.1:16050841-16050860 | MS.gene044452:intron | 45.0% | |
| CATCTAAGCTTCTGAGCTTC+AGG | + | chr8.1:16050346-16050365 | None:intergenic | 45.0% | |
| CCTCTGATGCTAAAGAATGC+AGG | + | chr8.1:16050815-16050834 | None:intergenic | 45.0% | |
| CCTGCATTCTTTAGCATCAG+AGG | - | chr8.1:16050812-16050831 | MS.gene044452:CDS | 45.0% | |
| CTTCTCAGCTTCCTCATTGA+AGG | + | chr8.1:16051111-16051130 | None:intergenic | 45.0% | |
| GACTCAACAGCAAAGTCAAC+AGG | + | chr8.1:16051398-16051417 | None:intergenic | 45.0% | |
| GAGGAAGCTGAGAAGATCAT+TGG | - | chr8.1:16051116-16051135 | MS.gene044452:CDS | 45.0% | |
| GCAATCAAATCCCTCAAGGT+TGG | - | chr8.1:16050166-16050185 | MS.gene044452:CDS | 45.0% | |
| GCTAGACAACCTTAGATCAC+AGG | - | chr8.1:16051154-16051173 | MS.gene044452:CDS | 45.0% | |
| GGTTGCAGGTATGATTCTGA+AGG | - | chr8.1:16050447-16050466 | MS.gene044452:intron | 45.0% | |
| TGAAGGTAAGGATGCTGCAA+TGG | - | chr8.1:16050464-16050483 | MS.gene044452:intron | 45.0% | |
| TGGAACAAAAGCAGCTTCGT+TGG | + | chr8.1:16049713-16049732 | None:intergenic | 45.0% | |
| TTCTGAGCTTCAGGTACTTC+TGG | + | chr8.1:16050337-16050356 | None:intergenic | 45.0% | |
| TTGAAAGTCCCCAACCTTGA+GGG | + | chr8.1:16050179-16050198 | None:intergenic | 45.0% | |
| ! | TTACTGAAGGCATGGATGCT+GGG | - | chr8.1:16050903-16050922 | MS.gene044452:intron | 45.0% |
| !! | CTGTTTTTCATCTGGGTTGC+AGG | - | chr8.1:16050433-16050452 | MS.gene044452:intron | 45.0% |
| !! | GCTTTTTCTTCGGATGCTCA+TGG | + | chr8.1:16049921-16049940 | None:intergenic | 45.0% |
| !! | TGAGAATTCTGAGGTGGAAG+AGG | - | chr8.1:16049684-16049703 | MS.gene044452:intron | 45.0% |
| !! | AAAAATTATAAACTAAATAT+GGG | + | chr8.1:16050643-16050662 | None:intergenic | 5.0% |
| !! | TAAAAATTATAAACTAAATA+TGG | + | chr8.1:16050644-16050663 | None:intergenic | 5.0% |
| AACAAGAGGACGCACTCTAC+GGG | + | chr8.1:16049277-16049296 | None:intergenic | 50.0% | |
| AGGACAGGAGTTACTGGACA+TGG | - | chr8.1:16050123-16050142 | MS.gene044452:intron | 50.0% | |
| AGTTTCTGATGCAAGTGGCG+AGG | - | chr8.1:16051073-16051092 | MS.gene044452:CDS | 50.0% | |
| CTCAAGGTTGGGGACTTTCA+AGG | - | chr8.1:16050178-16050197 | MS.gene044452:CDS | 50.0% | |
| CTGGTATACCATTGTCCCCT+AGG | - | chr8.1:16050366-16050385 | MS.gene044452:CDS | 50.0% | |
| CTTGAAAGTCCCCAACCTTG+AGG | + | chr8.1:16050180-16050199 | None:intergenic | 50.0% | |
| GAGGCAAAGGATAACAGCAC+GGG | - | chr8.1:16051364-16051383 | MS.gene044452:CDS | 50.0% | |
| GCAATGGCTGCTATAAGCTC+TGG | - | chr8.1:16050480-16050499 | MS.gene044452:intron | 50.0% | |
| GCAATGGTAAGGTCACGCTT+TGG | + | chr8.1:16049959-16049978 | None:intergenic | 50.0% | |
| TAAAGGCAGACCAGGCAATG+TGG | - | chr8.1:16050849-16050868 | MS.gene044452:intron | 50.0% | |
| ! | GTTACTGAAGGCATGGATGC+TGG | - | chr8.1:16050902-16050921 | MS.gene044452:intron | 50.0% |
| !! | CTGAGCTTGTTGGTGAGTGT+TGG | - | chr8.1:16049788-16049807 | MS.gene044452:CDS | 50.0% |
| AAGGCATGGATGCTGGGTAC+TGG | - | chr8.1:16050909-16050928 | MS.gene044452:intron | 55.0% | |
| AGGCACGATACCACATTGCC+TGG | + | chr8.1:16050862-16050881 | None:intergenic | 55.0% | |
| ATGGATCCCACACCTCATGC+GGG | - | chr8.1:16051307-16051326 | MS.gene044452:intron | 55.0% | |
| CATGGATCCCACACCTCATG+CGG | - | chr8.1:16051306-16051325 | MS.gene044452:intron | 55.0% | |
| GAGAAACACTGACCCGCATG+AGG | + | chr8.1:16051322-16051341 | None:intergenic | 55.0% | |
| ! | AGGTTGTCTAGCTCCTCAGC+AGG | + | chr8.1:16051146-16051165 | None:intergenic | 55.0% |
| ! | GGTTGTCTAGCTCCTCAGCA+GGG | + | chr8.1:16051145-16051164 | None:intergenic | 55.0% |
| ACACTGACCCGCATGAGGTG+TGG | + | chr8.1:16051317-16051336 | None:intergenic | 60.0% | |
| CACTGACCCGCATGAGGTGT+GGG | + | chr8.1:16051316-16051335 | None:intergenic | 60.0% | |
| CCTTCTCAGCCCCCAAAGAG+AGG | + | chr8.1:16050572-16050591 | None:intergenic | 60.0% | |
| GATCATTGGGTGCCCTGCTG+AGG | - | chr8.1:16051130-16051149 | MS.gene044452:CDS | 60.0% | |
| ! | CCTCTCTTTGGGGGCTGAGA+AGG | - | chr8.1:16050569-16050588 | MS.gene044452:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 16049270 | 16051463 | 16049270 | ID=MS.gene044452 |
| chr8.1 | mRNA | 16049270 | 16051463 | 16049270 | ID=MS.gene044452.t1;Parent=MS.gene044452 |
| chr8.1 | exon | 16051311 | 16051463 | 16051311 | ID=MS.gene044452.t1.exon1;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16051311 | 16051463 | 16051311 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16050934 | 16051204 | 16050934 | ID=MS.gene044452.t1.exon2;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16050934 | 16051204 | 16050934 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16050746 | 16050848 | 16050746 | ID=MS.gene044452.t1.exon3;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16050746 | 16050848 | 16050746 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16050534 | 16050658 | 16050534 | ID=MS.gene044452.t1.exon4;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16050534 | 16050658 | 16050534 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16050365 | 16050443 | 16050365 | ID=MS.gene044452.t1.exon5;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16050365 | 16050443 | 16050365 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16050143 | 16050278 | 16050143 | ID=MS.gene044452.t1.exon6;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16050143 | 16050278 | 16050143 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16049761 | 16049921 | 16049761 | ID=MS.gene044452.t1.exon7;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16049761 | 16049921 | 16049761 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16049558 | 16049678 | 16049558 | ID=MS.gene044452.t1.exon8;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16049558 | 16049678 | 16049558 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| chr8.1 | exon | 16049270 | 16049470 | 16049270 | ID=MS.gene044452.t1.exon9;Parent=MS.gene044452.t1 |
| chr8.1 | CDS | 16049270 | 16049470 | 16049270 | ID=cds.MS.gene044452.t1;Parent=MS.gene044452.t1 |
| Gene Sequence |
| Protein sequence |
