AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene64415

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64415.t1 MTR_2g041270 93.313 658 13 1 1 658 1 627 0.0 1259
MS.gene64415.t1 MTR_3g047950 72.258 465 114 3 203 655 121 582 0.0 699
MS.gene64415.t1 MTR_3g047950 61.983 121 46 0 1 121 1 121 3.46e-38 152
MS.gene64415.t1 MTR_4g109580 36.207 464 274 7 206 655 159 614 2.04e-93 301
MS.gene64415.t1 MTR_4g109580 38.500 400 224 7 206 591 159 550 1.19e-84 276
MS.gene64415.t1 MTR_4g109590 26.923 286 162 8 383 657 18 267 1.02e-22 98.6
MS.gene64415.t1 MTR_5g027390 24.932 369 230 15 237 587 23 362 2.76e-16 82.4
MS.gene64415.t1 MTR_4g070090 25.074 339 219 13 266 587 74 394 1.56e-15 80.1
MS.gene64415.t1 MTR_5g026880 34.400 125 71 2 1 125 1 114 9.82e-15 72.0
MS.gene64415.t1 MTR_6g052340 28.708 209 135 8 254 452 42 246 2.63e-14 76.6
MS.gene64415.t1 MTR_5g078250 24.797 246 166 7 254 486 46 285 1.15e-11 68.2
MS.gene64415.t1 MTR_8g479260 19.895 382 260 14 225 587 20 374 2.27e-11 67.4
MS.gene64415.t1 MTR_6g039240 22.330 309 193 11 215 504 8 288 4.87e-11 64.7
MS.gene64415.t1 MTR_4g036240 22.146 438 306 16 214 639 7 421 5.70e-11 65.9
MS.gene64415.t1 MTR_2g008650 19.634 382 261 14 225 587 20 374 6.11e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene64415.t1 AT2G06510 67.023 655 200 4 1 654 1 640 0.0 903
MS.gene64415.t1 AT2G06510 66.772 632 194 4 24 654 1 617 0.0 874
MS.gene64415.t1 AT4G19130 49.853 682 305 8 1 656 2 672 0.0 682
MS.gene64415.t1 AT4G19130 49.853 682 305 8 1 656 1 671 0.0 682
MS.gene64415.t1 AT5G45400 61.684 475 177 4 184 656 270 741 0.0 643
MS.gene64415.t1 AT5G45400 33.758 157 97 2 1 150 1 157 5.54e-19 92.0
MS.gene64415.t1 AT5G08020 32.584 623 346 14 42 654 41 599 2.52e-102 324
MS.gene64415.t1 AT5G61000 31.065 676 389 17 1 653 1 622 6.36e-96 308
MS.gene64415.t1 AT1G52950 22.045 440 294 14 215 629 10 425 7.42e-16 81.6

Find 184 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATTATTATTAATATTTC+TGG 0.129088 2.1:+49322262 None:intergenic
ACCAGCCTTTACTGCTAAAA+TGG 0.144775 2.1:+49321431 None:intergenic
CAGAAATATTAATAATAATT+TGG 0.171665 2.1:-49322261 MS.gene64415:CDS
TGCAGTAACCCTTGCCTTGA+TGG 0.192465 2.1:+49321986 None:intergenic
GGAAGCAGGGGAGGAGATTA+TGG 0.234809 2.1:-49320944 MS.gene64415:CDS
GATTTCACAATCAGGTATTA+TGG 0.235355 2.1:+49322364 None:intergenic
ATGCTATCCTTGATGTTATT+GGG 0.237693 2.1:-49321632 MS.gene64415:CDS
GTAGTAATGGGCAGAATTTC+AGG 0.238903 2.1:-49322133 MS.gene64415:CDS
GTAGTAATGGGCAGAATTTC+AGG 0.238903 2.1:-49322223 MS.gene64415:CDS
AATGCTATCCTTGATGTTAT+TGG 0.260217 2.1:-49321633 MS.gene64415:CDS
AGCTGCTTTAAATCCCTATC+AGG 0.291739 2.1:-49322018 MS.gene64415:CDS
TTCCTTGTACAGGATTATTA+TGG 0.291986 2.1:-49322402 MS.gene64415:intron
TGCTTCTCTATCCATTTCTA+AGG 0.293301 2.1:-49321286 MS.gene64415:CDS
TTGAATCTAAAGGACAATTC+TGG 0.293961 2.1:-49321540 MS.gene64415:CDS
AACTTGGGTAACTGCTTTCC+AGG 0.306558 2.1:-49320965 MS.gene64415:CDS
TAATCTCCTCCCCTGCTTCC+TGG 0.309445 2.1:+49320947 None:intergenic
GAGTGTTGAGCTAACACTTT+GGG 0.310178 2.1:-49321514 MS.gene64415:CDS
GTCTGAGCCTCAGGGAAATC+TGG 0.314113 2.1:+49321345 None:intergenic
GTTCTTAAGGTCTGAGCCTC+AGG 0.330109 2.1:+49321336 None:intergenic
TTGATCAAACCAGGTTCTTA+AGG 0.331128 2.1:+49321323 None:intergenic
GATGGCCCACCTACCCTGAT+AGG 0.333085 2.1:+49322004 None:intergenic
GCCCTCATTGTTATCCAGTC+TGG 0.338147 2.1:+49321180 None:intergenic
TCTCACCGCAAACGCTATTC+CGG 0.338839 2.1:-49324782 MS.gene64415:CDS
CAGGAGGATGATGAGAAGTT+TGG 0.346761 2.1:-49320883 MS.gene64415:CDS
CAATCACTGCCTACGGAACT+TGG 0.351957 2.1:+49320705 None:intergenic
CTCAACGACCGAGTCAATAC+TGG 0.354429 2.1:-49324610 MS.gene64415:CDS
TCAGGCAATGCTTTCTGAAC+TGG 0.362621 2.1:+49322305 None:intergenic
GGTATAGAACCATCCTCATC+TGG 0.367686 2.1:+49321708 None:intergenic
CTCAAAATGCTGGTAGTAAT+GGG 0.368189 2.1:-49322235 MS.gene64415:CDS
TCAATCATTTGAAGAATGAA+TGG 0.372621 2.1:-49321770 MS.gene64415:CDS
TGCCCATTACTACCAGCATT+TGG 0.378317 2.1:+49322143 None:intergenic
GCTCAAATCCAGGATCATTC+AGG 0.380015 2.1:-49320991 MS.gene64415:CDS
ACAGCTTGCCCTCTGATGAT+TGG 0.387057 2.1:-49321120 MS.gene64415:CDS
GAACCAGCCACAGTGTTATC+AGG 0.387320 2.1:+49322287 None:intergenic
CAAATTAAAGATGAAGATCT+AGG 0.387556 2.1:-49321216 MS.gene64415:CDS
GGGCAAGCTGTGTAACAAAA+TGG 0.387851 2.1:+49321132 None:intergenic
TTTGGGGTGAATTCTGCAAC+AGG 0.396738 2.1:-49321497 MS.gene64415:CDS
GATGAAGATCTAGGGCGTTC+AGG 0.398577 2.1:-49321207 MS.gene64415:CDS
GGTGAAGATTACAGTAGTTA+AGG 0.400983 2.1:-49320779 MS.gene64415:CDS
ATGAGTGATGTCCTTAGAAA+TGG 0.402311 2.1:+49321275 None:intergenic
CTCCAAATGCTGGTAGTAAT+GGG 0.405201 2.1:-49322145 MS.gene64415:CDS
CCAGCCTTTACTGCTAAAAT+GGG 0.406397 2.1:+49321432 None:intergenic
GAACCTGGTTTGATCAAGTT+GGG 0.410401 2.1:-49321317 MS.gene64415:CDS
AGCGGAGGAGGTTGGTATTG+AGG 0.411724 2.1:+49322188 None:intergenic
TCTGAATCCACAAATGACTT+TGG 0.414308 2.1:+49322332 None:intergenic
ATACCTGATTGTGAAATCAT+TGG 0.415649 2.1:-49322359 MS.gene64415:CDS
CTTCAAGAGATGGTGGATGC+TGG 0.419540 2.1:-49321462 MS.gene64415:CDS
AGAACCTGGTTTGATCAAGT+TGG 0.422430 2.1:-49321318 MS.gene64415:CDS
CAATCATTTGAAGAATGAAT+GGG 0.424161 2.1:-49321769 MS.gene64415:CDS
TTCCCAATGATTTCACAATC+AGG 0.429166 2.1:+49322356 None:intergenic
TGGGAATCCAAAGTCATTTG+TGG 0.432048 2.1:-49322339 MS.gene64415:CDS
GGCGTTCAGGCAAGCCAGAC+TGG 0.443599 2.1:-49321194 MS.gene64415:CDS
TCTTCAATGAGTTTGTGTTT+AGG 0.444396 2.1:-49320840 MS.gene64415:CDS
CGAAGTCAGGAGACACAAAA+TGG 0.444863 2.1:-49321071 MS.gene64415:CDS
AGGATCATTCAGGATTAACT+TGG 0.448406 2.1:-49320981 MS.gene64415:CDS
GAAGCAGGGGAGGAGATTAT+GGG 0.448431 2.1:-49320943 MS.gene64415:CDS
ATTCCGATGGAGGTGAAATA+CGG 0.449887 2.1:-49321896 MS.gene64415:CDS
TTCAAGAGATGGTGGATGCT+GGG 0.453587 2.1:-49321461 MS.gene64415:CDS
TTTGATCTCCTTGATTCCGA+TGG 0.453893 2.1:-49321909 MS.gene64415:CDS
GCTCCAAATGCTGGTAGTAA+TGG 0.459212 2.1:-49322146 MS.gene64415:CDS
GCGGTGAGATTTACCGCCAT+TGG 0.459401 2.1:+49324796 None:intergenic
GAATTCAGTGGAAAGTCTAT+AGG 0.459727 2.1:-49321399 MS.gene64415:CDS
TTTAGCAGTAAAGGCTGGTA+AGG 0.460163 2.1:-49321427 MS.gene64415:CDS
TACCTGATTGTGAAATCATT+GGG 0.460436 2.1:-49322358 MS.gene64415:CDS
TGATTGAAATTCTTCTGTGC+AGG 0.460517 2.1:+49321786 None:intergenic
AATAAGAAAGTGACGAAGTC+AGG 0.461922 2.1:-49321084 MS.gene64415:CDS
GTAACTGCTTTCCAGGAAGC+AGG 0.462729 2.1:-49320958 MS.gene64415:CDS
TAAAGCGGAGGAGGTTGGTA+TGG 0.464313 2.1:+49322095 None:intergenic
TACAGTAGTTAAGGCAGATA+AGG 0.467853 2.1:-49320770 MS.gene64415:CDS
GAATGAATGGGAAATTATGC+TGG 0.470378 2.1:-49321757 MS.gene64415:CDS
CCGTTTCTATGAAGCAATTG+AGG 0.474581 2.1:-49321847 MS.gene64415:CDS
AAGGCAAGGGTTACTGCAAA+AGG 0.476738 2.1:-49321981 MS.gene64415:CDS
GTTCCCATCGTAAGGAAGAA+TGG 0.477384 2.1:-49321585 MS.gene64415:CDS
GCTCAAAATGCTGGTAGTAA+TGG 0.484784 2.1:-49322236 MS.gene64415:CDS
TTCGTCACTTTCTTATTGCA+CGG 0.485857 2.1:+49321090 None:intergenic
TGTTGTAAAGCGGAGGAGGT+TGG 0.489573 2.1:+49322180 None:intergenic
AATGATCCTGGATTTGAGCT+TGG 0.492318 2.1:+49320995 None:intergenic
AAGTTAATCCTGAATGATCC+TGG 0.493959 2.1:+49320983 None:intergenic
TAGGGATTTAAAGCAGCTAT+AGG 0.496621 2.1:+49322023 None:intergenic
TTTCACCTCCATCGGAATCA+AGG 0.500395 2.1:+49321901 None:intergenic
TATGCTGGATTTAAATTCAA+CGG 0.500855 2.1:-49321742 MS.gene64415:CDS
TACCCGTATTTCACCTCCAT+CGG 0.501159 2.1:+49321893 None:intergenic
GCTATAGGTATTACACGTGC+TGG 0.503122 2.1:+49322038 None:intergenic
GCTATTCCGGCGATAATCGC+CGG 0.503326 2.1:-49324769 MS.gene64415:CDS
TAGATGCAACCAGGAGTTTG+AGG 0.505007 2.1:-49321040 MS.gene64415:CDS
AATTTGGCTGCTCCAAATGC+TGG 0.507899 2.1:-49322155 MS.gene64415:CDS
TGCTATCCTTGATGTTATTG+GGG 0.509422 2.1:-49321631 MS.gene64415:CDS
AGCGGAGGAGGTTGGTATGG+AGG 0.511425 2.1:+49322098 None:intergenic
GATTATTATGGTGCTTAACA+TGG 0.514700 2.1:-49322390 MS.gene64415:CDS
ATCCTTCAGTTCCCATCGTA+AGG 0.516057 2.1:-49321593 MS.gene64415:CDS
ACGTCGCCGGCGATTATCGC+CGG 0.516823 2.1:+49324763 None:intergenic
TTCTATGAAGCAATTGAGGT+TGG 0.517168 2.1:-49321843 MS.gene64415:CDS
ATTCCATTCTTCCTTACGAT+GGG 0.519102 2.1:+49321582 None:intergenic
ACAGTCTCAATGTCACTGAT+AGG 0.519707 2.1:+49321663 None:intergenic
GATCTCCTTGATTCCGATGG+AGG 0.519739 2.1:-49321906 MS.gene64415:CDS
CGGTTTGGCGTCGACGTCGC+CGG 0.521923 2.1:+49324750 None:intergenic
TATAACAATGCTCGTGGAGA+TGG 0.523700 2.1:-49321945 MS.gene64415:CDS
CGACCTTTGTAAAGCGGAGG+AGG 0.525294 2.1:+49322086 None:intergenic
TCAGGGTAGGTGGGCCATCA+AGG 0.528250 2.1:-49322000 MS.gene64415:CDS
CTGAAGGAGAATTGTTGTCT+AGG 0.528586 2.1:+49321687 None:intergenic
AATTTGGCTGCTCAAAATGC+TGG 0.530811 2.1:-49322245 MS.gene64415:CDS
CATTCCATTCTTCCTTACGA+TGG 0.533999 2.1:+49321581 None:intergenic
GAGCTTTGCCCAGATGAGGA+TGG 0.534821 2.1:-49321717 MS.gene64415:CDS
CCTGGATTTGAGCTTGGAGA+AGG 0.534963 2.1:+49321001 None:intergenic
AATCACATTCCTCAAACTCC+TGG 0.536282 2.1:+49321031 None:intergenic
ATTTCTAAGGACATCACTCA+TGG 0.537700 2.1:-49321273 MS.gene64415:CDS
TATCGCCGGAATAGCGTTTG+CGG 0.537944 2.1:+49324777 None:intergenic
GAGAACTTGAAGTAACGGTT+TGG 0.539039 2.1:+49324735 None:intergenic
GTATGTGTTGAAGTATGAAC+AGG 0.543799 2.1:-49320902 MS.gene64415:CDS
ATGGCCCACCTACCCTGATA+GGG 0.544473 2.1:+49322005 None:intergenic
AAAGTTTACTTGATATCGAA+AGG 0.544592 2.1:-49321819 MS.gene64415:CDS
TAAATCCCTATCAGGGTAGG+TGG 0.547460 2.1:-49322010 MS.gene64415:CDS
GTAGGTGGGCCATCAAGGCA+AGG 0.549490 2.1:-49321995 MS.gene64415:CDS
TTCCTTACGATGGGAACTGA+AGG 0.549709 2.1:+49321591 None:intergenic
TGGTATTGAGGTTGAACTGT+TGG 0.550725 2.1:+49322200 None:intergenic
TTTCCCAACTTGATCAAACC+AGG 0.553038 2.1:+49321314 None:intergenic
AGGCTCAGACCTTAAGAACC+TGG 0.553217 2.1:-49321332 MS.gene64415:CDS
CTTTGTAAAGCGGAGGAGGT+TGG 0.553943 2.1:+49322090 None:intergenic
AGAGTGTTGAGCTAACACTT+TGG 0.559856 2.1:-49321515 MS.gene64415:CDS
TGGAATGGAAACACTGAGAA+GGG 0.560059 2.1:-49321565 MS.gene64415:CDS
CGCCGCTATAACAATGCTCG+TGG 0.561907 2.1:-49321951 MS.gene64415:CDS
CCTTCTCCAAGCTCAAATCC+AGG 0.562294 2.1:-49321001 MS.gene64415:CDS
CCTCAATTGCTTCATAGAAA+CGG 0.565250 2.1:+49321847 None:intergenic
CATCGTAAGGAAGAATGGAA+TGG 0.565891 2.1:-49321580 MS.gene64415:CDS
ATGGAATGGAAACACTGAGA+AGG 0.567325 2.1:-49321566 MS.gene64415:CDS
TGCTTTCCAGGAAGCAGGGG+AGG 0.568330 2.1:-49320953 MS.gene64415:CDS
CCTCCGCTTTACAAAGGTCG+TGG 0.571787 2.1:-49322083 MS.gene64415:CDS
TTGCCTGATAACACTGTGGC+TGG 0.572437 2.1:-49322290 MS.gene64415:CDS
TAACTGCTTTCCAGGAAGCA+GGG 0.573726 2.1:-49320957 MS.gene64415:CDS
TCAAGAGATGGTGGATGCTG+GGG 0.574359 2.1:-49321460 MS.gene64415:CDS
AAATTAAAGATGAAGATCTA+GGG 0.575955 2.1:-49321215 MS.gene64415:CDS
GGTTGAGCTTTGCCCAGATG+AGG 0.577862 2.1:-49321721 MS.gene64415:CDS
GCTGCTTTAAATCCCTATCA+GGG 0.580315 2.1:-49322017 MS.gene64415:CDS
TGGTATGGAGGTTGAACTGT+TGG 0.582038 2.1:+49322110 None:intergenic
ATGTCGAGAACTTGAAGTAA+CGG 0.582274 2.1:+49324730 None:intergenic
CAAGCTACAATCACTGCCTA+CGG 0.586389 2.1:+49320698 None:intergenic
GTATAGAACCATCCTCATCT+GGG 0.586999 2.1:+49321709 None:intergenic
AATGTCACTGATAGGTCTGA+AGG 0.587612 2.1:+49321671 None:intergenic
ATTATATAATGACGAACAGA+AGG 0.587920 2.1:-49320800 MS.gene64415:CDS
TTTCTAAGGACATCACTCAT+GGG 0.588441 2.1:-49321272 MS.gene64415:CDS
AACTGCTTTCCAGGAAGCAG+GGG 0.589254 2.1:-49320956 MS.gene64415:CDS
ATCGGTCCTCATGAATGATA+CGG 0.591847 2.1:+49321155 None:intergenic
AGGACAAAAGCTTCAAGAGA+TGG 0.592318 2.1:-49321472 MS.gene64415:CDS
TTCCGATGGAGGTGAAATAC+GGG 0.595001 2.1:-49321895 MS.gene64415:CDS
GAAGAAGACGGTAACGCTGT+TGG 0.595499 2.1:+49324677 None:intergenic
GGTAAGGTTAATGAATTCAG+TGG 0.596983 2.1:-49321411 MS.gene64415:CDS
ACAAAAGCTTCAAGAGATGG+TGG 0.598927 2.1:-49321469 MS.gene64415:CDS
TGAATTATTCTGCAGAGAGT+AGG 0.600929 2.1:-49320747 MS.gene64415:CDS
CTCCACGAGCATTGTTATAG+CGG 0.600995 2.1:+49321949 None:intergenic
CATAGCGTGATGAGACGAAA+CGG 0.603251 2.1:+49324645 None:intergenic
TAGGTGGGCCATCAAGGCAA+GGG 0.604948 2.1:-49321994 MS.gene64415:CDS
TCACAACCCCAATAACATCA+AGG 0.606648 2.1:+49321625 None:intergenic
CTTTAAATCCCTATCAGGGT+AGG 0.611287 2.1:-49322013 MS.gene64415:CDS
TAATACTTGCGATTCTGAAG+CGG 0.611376 2.1:+49324538 None:intergenic
GTCGATCTCCAATCATCAGA+GGG 0.611616 2.1:+49321112 None:intergenic
AGCTGTGTAACAAAATGGAT+CGG 0.612353 2.1:+49321137 None:intergenic
GGATCATTCAGGATTAACTT+GGG 0.613069 2.1:-49320980 MS.gene64415:CDS
GACTCGGTCGTTGAGTTGAG+CGG 0.615017 2.1:+49324618 None:intergenic
TTCTTAAGGTCTGAGCCTCA+GGG 0.623006 2.1:+49321337 None:intergenic
GTTTAGGCTGAAAATCAAAG+AGG 0.625551 2.1:-49320824 MS.gene64415:CDS
GGTGAATTCTGCAACAGGGA+AGG 0.626099 2.1:-49321492 MS.gene64415:CDS
TTCTAAGGACATCACTCATG+GGG 0.629562 2.1:-49321271 MS.gene64415:CDS
GCCAGACTGGATAACAATGA+GGG 0.637901 2.1:-49321181 MS.gene64415:CDS
GGTCGATCTCCAATCATCAG+AGG 0.638969 2.1:+49321111 None:intergenic
AAATCCCTATCAGGGTAGGT+GGG 0.640512 2.1:-49322009 MS.gene64415:CDS
CAACCTCCTCCGCTTTACAA+AGG 0.641625 2.1:-49322089 MS.gene64415:CDS
GTGATGAGACGAAACGGCGT+CGG 0.651118 2.1:+49324651 None:intergenic
AGCCAGACTGGATAACAATG+AGG 0.656016 2.1:-49321182 MS.gene64415:CDS
CAGCCTTTACTGCTAAAATG+GGG 0.656745 2.1:+49321433 None:intergenic
TAACTCGTCCAGTATTGACT+CGG 0.656872 2.1:+49324602 None:intergenic
GCACCACGACCTTTGTAAAG+CGG 0.657064 2.1:+49322080 None:intergenic
GTAATCGAGAAGCTGAACGA+TGG 0.661747 2.1:+49324570 None:intergenic
CCACGACCTTTGTAAAGCGG+AGG 0.662907 2.1:+49322083 None:intergenic
GCAGTGTGATAGATGCAACC+AGG 0.664374 2.1:-49321049 MS.gene64415:CDS
AATACTGGACGAGTTAAGCA+AGG 0.673990 2.1:-49324595 MS.gene64415:CDS
TGTGTTGAAGTATGAACAGG+AGG 0.677244 2.1:-49320899 MS.gene64415:CDS
GGGCAACCGTATCATTCATG+AGG 0.684770 2.1:-49321161 MS.gene64415:CDS
AGTGTTGAGCTAACACTTTG+GGG 0.692814 2.1:-49321513 MS.gene64415:CDS
CATAAATCCAGATTTCCCTG+AGG 0.709312 2.1:-49321352 MS.gene64415:CDS
TTGGGGTGAATTCTGCAACA+GGG 0.712179 2.1:-49321496 MS.gene64415:CDS
CGGCGTCGGAGAGAAGAAGA+CGG 0.718695 2.1:+49324665 None:intergenic
AAGCAGGGGAGGAGATTATG+GGG 0.738154 2.1:-49320942 MS.gene64415:CDS
TCTAAGGACATCACTCATGG+GGG 0.753824 2.1:-49321270 MS.gene64415:CDS
AGCATTGCCTGATAACACTG+TGG 0.782811 2.1:-49322294 MS.gene64415:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATTATTATTAATATTTC+TGG + chr2.1:49323242-49323261 None:intergenic 10.0%
!! CAGAAATATTAATAATAATT+TGG - chr2.1:49323240-49323259 MS.gene64415:intron 10.0%
!! TTAAGTGATTAATTGATTAT+CGG - chr2.1:49321025-49321044 MS.gene64415:CDS 15.0%
!! AAAGAATTAGTGTATGAATT+AGG - chr2.1:49321140-49321159 MS.gene64415:CDS 20.0%
!! AAATTAAAGATGAAGATCTA+GGG - chr2.1:49324286-49324305 MS.gene64415:intron 20.0%
!! ATGTATCATCTATAATGTTT+AGG + chr2.1:49322971-49322990 None:intergenic 20.0%
!! TAATTGTTAGTGTAAGAATT+AGG - chr2.1:49322187-49322206 MS.gene64415:CDS 20.0%
!! TACATAAGTGTTATATTCTT+TGG - chr2.1:49322798-49322817 MS.gene64415:intron 20.0%
!! TGTATCATCTATAATGTTTA+GGG + chr2.1:49322970-49322989 None:intergenic 20.0%
!!! AACATTTTAGGTTGAAAATT+TGG + chr2.1:49322333-49322352 None:intergenic 20.0%
!!! AAGTTGTATTTCTAAGAATT+AGG - chr2.1:49321457-49321476 MS.gene64415:CDS 20.0%
!!! AATGTTTTAGGTTGAAATTT+TGG + chr2.1:49322755-49322774 None:intergenic 20.0%
!!! ATTTTCAACCTAAAATGTTA+TGG - chr2.1:49322334-49322353 MS.gene64415:CDS 20.0%
!!! TATTTCTAAGAATTAGGATA+TGG - chr2.1:49321463-49321482 MS.gene64415:CDS 20.0%
!!! TGTATCATCAATAACATTTT+AGG + chr2.1:49322345-49322364 None:intergenic 20.0%
!!! TGTGATTTTCACTTTTTATT+AGG - chr2.1:49321239-49321258 MS.gene64415:CDS 20.0%
!!! TTATGTACATTTCACTTTTT+AGG - chr2.1:49321564-49321583 MS.gene64415:CDS 20.0%
! AAAGTTTACTTGATATCGAA+AGG - chr2.1:49323682-49323701 MS.gene64415:intron 25.0%
! AAGTTGCATTTGTAAGAATT+AGG - chr2.1:49321292-49321311 MS.gene64415:CDS 25.0%
! CAAATTAAAGATGAAGATCT+AGG - chr2.1:49324285-49324304 MS.gene64415:intron 25.0%
! CAATCATTTGAAGAATGAAT+GGG - chr2.1:49323732-49323751 MS.gene64415:intron 25.0%
! TATGCTGGATTTAAATTCAA+CGG - chr2.1:49323759-49323778 MS.gene64415:intron 25.0%
! TCAATCATTTGAAGAATGAA+TGG - chr2.1:49323731-49323750 MS.gene64415:intron 25.0%
! TTAGTGATAGTATTAGGATA+TGG - chr2.1:49322415-49322434 MS.gene64415:intron 25.0%
!! ATAATGTTTAGGGTGAAAAT+TGG + chr2.1:49322960-49322979 None:intergenic 25.0%
!! CAAATTTTGAACTAAAGCAA+TGG + chr2.1:49322133-49322152 None:intergenic 25.0%
!! GTGATAGTTAAATTACGTTT+TGG - chr2.1:49322455-49322474 MS.gene64415:intron 25.0%
!!! TTATGTGCATTTCACTTTTT+AGG - chr2.1:49321404-49321423 MS.gene64415:CDS 25.0%
AACATTGTAGATGATGCATT+TGG - chr2.1:49322769-49322788 MS.gene64415:intron 30.0%
AACGTTCTGATAGATGTATT+TGG - chr2.1:49321608-49321627 MS.gene64415:CDS 30.0%
AATGCTATCCTTGATGTTAT+TGG - chr2.1:49323868-49323887 MS.gene64415:intron 30.0%
AATGTTATGGATGATGCATT+TGG - chr2.1:49322563-49322582 MS.gene64415:intron 30.0%
ACTATAACACTTTATTGTGG+CGG + chr2.1:49321961-49321980 None:intergenic 30.0%
AGATGATACATTAGAGCTTA+TGG - chr2.1:49322980-49322999 MS.gene64415:intron 30.0%
ATACCTGATTGTGAAATCAT+TGG - chr2.1:49323142-49323161 MS.gene64415:intron 30.0%
ATGCTATCCTTGATGTTATT+GGG - chr2.1:49323869-49323888 MS.gene64415:intron 30.0%
CATTTGTAAGAATTAGGTGA+TGG - chr2.1:49321298-49321317 MS.gene64415:CDS 30.0%
GAGTGATTAGTGATAGTATT+AGG - chr2.1:49322409-49322428 MS.gene64415:intron 30.0%
GATTATTATGGTGCTTAACA+TGG - chr2.1:49323111-49323130 MS.gene64415:intron 30.0%
GATTTCACAATCAGGTATTA+TGG + chr2.1:49323140-49323159 None:intergenic 30.0%
GTTATCACATTTCATCAACA+AGG + chr2.1:49321491-49321510 None:intergenic 30.0%
TACACTAACAATTAACCCAA+GGG + chr2.1:49322181-49322200 None:intergenic 30.0%
TACCTGATTGTGAAATCATT+GGG - chr2.1:49323143-49323162 MS.gene64415:intron 30.0%
TAGTCAAATAGCAACTATAG+CGG + chr2.1:49321985-49322004 None:intergenic 30.0%
TCCGCTTTACAACAAAAATT+TGG - chr2.1:49323330-49323349 MS.gene64415:intron 30.0%
TCTTCAATGAGTTTGTGTTT+AGG - chr2.1:49324661-49324680 MS.gene64415:CDS 30.0%
TGATTAATGTTATGGAACCT+CGG - chr2.1:49322628-49322647 MS.gene64415:intron 30.0%
TTACACTAACAATTAACCCA+AGG + chr2.1:49322182-49322201 None:intergenic 30.0%
TTCCTTGTACAGGATTATTA+TGG - chr2.1:49323099-49323118 MS.gene64415:intron 30.0%
TTGAATCTAAAGGACAATTC+TGG - chr2.1:49323961-49323980 MS.gene64415:intron 30.0%
! AATGCATCATAACTGACTTT+AGG - chr2.1:49323035-49323054 MS.gene64415:intron 30.0%
! TGCATCATCCATAACATTTT+AGG + chr2.1:49322561-49322580 None:intergenic 30.0%
! TGCATCATCTACAATGTTTT+AGG + chr2.1:49322767-49322786 None:intergenic 30.0%
! TTTAGTTTCTTGTATCCCTT+GGG - chr2.1:49322163-49322182 MS.gene64415:CDS 30.0%
!! AAATTTTTGTTGTAAAGCGG+AGG + chr2.1:49323331-49323350 None:intergenic 30.0%
!! ATACAACTTCTAGAACGATT+AGG + chr2.1:49321446-49321465 None:intergenic 30.0%
!! ATTTTATTTCCAAGTTCCGT+AGG - chr2.1:49324787-49324806 MS.gene64415:CDS 30.0%
!! GCCAAATTTTTGTTGTAAAG+CGG + chr2.1:49323334-49323353 None:intergenic 30.0%
!!! TTTTAGTTTCTTGTATCCCT+TGG - chr2.1:49322162-49322181 MS.gene64415:CDS 30.0%
AAGTTAATCCTGAATGATCC+TGG + chr2.1:49324521-49324540 None:intergenic 35.0%
AATAAGAAAGTGACGAAGTC+AGG - chr2.1:49324417-49324436 MS.gene64415:intron 35.0%
AGCTGTGTAACAAAATGGAT+CGG + chr2.1:49324367-49324386 None:intergenic 35.0%
AGGATCATTCAGGATTAACT+TGG - chr2.1:49324520-49324539 MS.gene64415:intron 35.0%
ATGAGTGATGTCCTTAGAAA+TGG + chr2.1:49324229-49324248 None:intergenic 35.0%
ATGTCGAGAACTTGAAGTAA+CGG + chr2.1:49320774-49320793 None:intergenic 35.0%
ATTATCATAGTTCACTACCG+AGG + chr2.1:49322648-49322667 None:intergenic 35.0%
ATTCCATTCTTCCTTACGAT+GGG + chr2.1:49323922-49323941 None:intergenic 35.0%
CACCATAATAATCCTGTACA+AGG + chr2.1:49323104-49323123 None:intergenic 35.0%
CCTCAATTGCTTCATAGAAA+CGG + chr2.1:49323657-49323676 None:intergenic 35.0%
CTCAAAATGCTGGTAGTAAT+GGG - chr2.1:49323266-49323285 MS.gene64415:intron 35.0%
GAATGAATGGGAAATTATGC+TGG - chr2.1:49323744-49323763 MS.gene64415:intron 35.0%
GAATTCAGTGGAAAGTCTAT+AGG - chr2.1:49324102-49324121 MS.gene64415:intron 35.0%
GGATCATTCAGGATTAACTT+GGG - chr2.1:49324521-49324540 MS.gene64415:intron 35.0%
GGCACTATAACACTTTATTG+TGG + chr2.1:49321964-49321983 None:intergenic 35.0%
GGTAAGGTTAATGAATTCAG+TGG - chr2.1:49324090-49324109 MS.gene64415:intron 35.0%
GGTGAAGATTACAGTAGTTA+AGG - chr2.1:49324722-49324741 MS.gene64415:CDS 35.0%
GTAACTTCAGTGAAGAATTG+TGG - chr2.1:49322846-49322865 MS.gene64415:intron 35.0%
GTATGTGTTGAAGTATGAAC+AGG - chr2.1:49324599-49324618 MS.gene64415:CDS 35.0%
GTCAAATAGCTGTCAAAACA+TGG + chr2.1:49321728-49321747 None:intergenic 35.0%
GTTTAGGCTGAAAATCAAAG+AGG - chr2.1:49324677-49324696 MS.gene64415:CDS 35.0%
TACAGTAGTTAAGGCAGATA+AGG - chr2.1:49324731-49324750 MS.gene64415:CDS 35.0%
TCTGAATCCACAAATGACTT+TGG + chr2.1:49323172-49323191 None:intergenic 35.0%
TGAATTATTCTGCAGAGAGT+AGG - chr2.1:49324754-49324773 MS.gene64415:CDS 35.0%
TGATTGAAATTCTTCTGTGC+AGG + chr2.1:49323718-49323737 None:intergenic 35.0%
TGCTATCCTTGATGTTATTG+GGG - chr2.1:49323870-49323889 MS.gene64415:intron 35.0%
TGCTTCTCTATCCATTTCTA+AGG - chr2.1:49324215-49324234 MS.gene64415:intron 35.0%
TGGGCGAATGATTAATGTTA+TGG - chr2.1:49322620-49322639 MS.gene64415:intron 35.0%
TGGTGCAGTTATGAAAAATG+AGG - chr2.1:49323438-49323457 MS.gene64415:intron 35.0%
TTCCCAATGATTTCACAATC+AGG + chr2.1:49323148-49323167 None:intergenic 35.0%
TTCTATGAAGCAATTGAGGT+TGG - chr2.1:49323658-49323677 MS.gene64415:intron 35.0%
TTGATCAAACCAGGTTCTTA+AGG + chr2.1:49324181-49324200 None:intergenic 35.0%
! ACATAAGTGTTAGCTTCTTG+TGG - chr2.1:49322593-49322612 MS.gene64415:intron 35.0%
! AGTTTTGCGTATCTCATTCT+TGG + chr2.1:49324259-49324278 None:intergenic 35.0%
! ATTTCTAAGGACATCACTCA+TGG - chr2.1:49324228-49324247 MS.gene64415:intron 35.0%
! GTTTTGCGTATCTCATTCTT+GGG + chr2.1:49324258-49324277 None:intergenic 35.0%
! TAATACTTGCGATTCTGAAG+CGG + chr2.1:49320966-49320985 None:intergenic 35.0%
! TAGGGATTTAAAGCAGCTAT+AGG + chr2.1:49323481-49323500 None:intergenic 35.0%
! TTCGTCACTTTCTTATTGCA+CGG + chr2.1:49324414-49324433 None:intergenic 35.0%
! TTTCTAAGGACATCACTCAT+GGG - chr2.1:49324229-49324248 MS.gene64415:intron 35.0%
!! CAGAAGTGCTTTAGTTCAAA+TGG - chr2.1:49321808-49321827 MS.gene64415:CDS 35.0%
!! GTGTTTGTTTTTCCTTGTAC+AGG - chr2.1:49323089-49323108 MS.gene64415:intron 35.0%
!! GTTCAAATGGATTACATCAG+CGG - chr2.1:49321821-49321840 MS.gene64415:CDS 35.0%
!! TTTCCCCATTTTAGCAGTAA+AGG - chr2.1:49324065-49324084 MS.gene64415:intron 35.0%
!!! GAGAAGGGTTTTGAATCTAA+AGG - chr2.1:49323951-49323970 MS.gene64415:intron 35.0%
!!! TTGTGTGCGTTTTGCTTTTT+AGG - chr2.1:49321075-49321094 MS.gene64415:CDS 35.0%
AATACTGGACGAGTTAAGCA+AGG - chr2.1:49320906-49320925 MS.gene64415:CDS 40.0%
AATCACATTCCTCAAACTCC+TGG + chr2.1:49324473-49324492 None:intergenic 40.0%
AATGATCCTGGATTTGAGCT+TGG + chr2.1:49324509-49324528 None:intergenic 40.0%
AATGTCACTGATAGGTCTGA+AGG + chr2.1:49323833-49323852 None:intergenic 40.0%
AATTTGGCTGCTCAAAATGC+TGG - chr2.1:49323256-49323275 MS.gene64415:intron 40.0%
ACAAAAGCTTCAAGAGATGG+TGG - chr2.1:49324032-49324051 MS.gene64415:intron 40.0%
ACAGTCTCAATGTCACTGAT+AGG + chr2.1:49323841-49323860 None:intergenic 40.0%
ACCAGCCTTTACTGCTAAAA+TGG + chr2.1:49324073-49324092 None:intergenic 40.0%
AGGACAAAAGCTTCAAGAGA+TGG - chr2.1:49324029-49324048 MS.gene64415:intron 40.0%
ATCGGTCCTCATGAATGATA+CGG + chr2.1:49324349-49324368 None:intergenic 40.0%
ATGGAATGGAAACACTGAGA+AGG - chr2.1:49323935-49323954 MS.gene64415:intron 40.0%
ATTCCGATGGAGGTGAAATA+CGG - chr2.1:49323605-49323624 MS.gene64415:intron 40.0%
CAGCCTTTACTGCTAAAATG+GGG + chr2.1:49324071-49324090 None:intergenic 40.0%
CATAAATCCAGATTTCCCTG+AGG - chr2.1:49324149-49324168 MS.gene64415:intron 40.0%
CATCGTAAGGAAGAATGGAA+TGG - chr2.1:49323921-49323940 MS.gene64415:intron 40.0%
CATTCCATTCTTCCTTACGA+TGG + chr2.1:49323923-49323942 None:intergenic 40.0%
CCAGCCTTTACTGCTAAAAT+GGG + chr2.1:49324072-49324091 None:intergenic 40.0%
CCGTTTCTATGAAGCAATTG+AGG - chr2.1:49323654-49323673 MS.gene64415:intron 40.0%
CTCCAAATGCTGGTAGTAAT+GGG - chr2.1:49323356-49323375 MS.gene64415:intron 40.0%
CTGAAGGAGAATTGTTGTCT+AGG + chr2.1:49323817-49323836 None:intergenic 40.0%
CTTTAAATCCCTATCAGGGT+AGG - chr2.1:49323488-49323507 MS.gene64415:intron 40.0%
GAGAACTTGAAGTAACGGTT+TGG + chr2.1:49320769-49320788 None:intergenic 40.0%
GCTCAAAATGCTGGTAGTAA+TGG - chr2.1:49323265-49323284 MS.gene64415:intron 40.0%
GTATAGAACCATCCTCATCT+GGG + chr2.1:49323795-49323814 None:intergenic 40.0%
TATAACAATGCTCGTGGAGA+TGG - chr2.1:49323556-49323575 MS.gene64415:intron 40.0%
TCACAACCCCAATAACATCA+AGG + chr2.1:49323879-49323898 None:intergenic 40.0%
TGGAATGGAAACACTGAGAA+GGG - chr2.1:49323936-49323955 MS.gene64415:intron 40.0%
TGGGAATCCAAAGTCATTTG+TGG - chr2.1:49323162-49323181 MS.gene64415:intron 40.0%
TGTGTTGAAGTATGAACAGG+AGG - chr2.1:49324602-49324621 MS.gene64415:CDS 40.0%
TTTAGCAGTAAAGGCTGGTA+AGG - chr2.1:49324074-49324093 MS.gene64415:intron 40.0%
TTTCCCAACTTGATCAAACC+AGG + chr2.1:49324190-49324209 None:intergenic 40.0%
TTTGATCTCCTTGATTCCGA+TGG - chr2.1:49323592-49323611 MS.gene64415:intron 40.0%
! AGAACCTGGTTTGATCAAGT+TGG - chr2.1:49324183-49324202 MS.gene64415:intron 40.0%
! AGCTGCTTTAAATCCCTATC+AGG - chr2.1:49323483-49323502 MS.gene64415:intron 40.0%
! AGTGTTGAGCTAACACTTTG+GGG - chr2.1:49323988-49324007 MS.gene64415:intron 40.0%
! GAACCTGGTTTGATCAAGTT+GGG - chr2.1:49324184-49324203 MS.gene64415:intron 40.0%
! GAATCAGTGTTGTTAGATCG+TGG - chr2.1:49321630-49321649 MS.gene64415:CDS 40.0%
! GCTGCTTTAAATCCCTATCA+GGG - chr2.1:49323484-49323503 MS.gene64415:intron 40.0%
! GTTAGCTTCTTCTATCTCCT+GGG - chr2.1:49322385-49322404 MS.gene64415:CDS 40.0%
! TGGTATTGAGGTTGAACTGT+TGG + chr2.1:49323304-49323323 None:intergenic 40.0%
! TGTTAGCTTCTTCTATCTCC+TGG - chr2.1:49322384-49322403 MS.gene64415:CDS 40.0%
! TTCTAAGGACATCACTCATG+GGG - chr2.1:49324230-49324249 MS.gene64415:intron 40.0%
!! AGAGTGTTGAGCTAACACTT+TGG - chr2.1:49323986-49324005 MS.gene64415:intron 40.0%
!! GAGTGTTGAGCTAACACTTT+GGG - chr2.1:49323987-49324006 MS.gene64415:intron 40.0%
!! GTAGTAATGGGCAGAATTTC+AGG - chr2.1:49323278-49323297 MS.gene64415:intron 40.0%
!! TAACTCGTCCAGTATTGACT+CGG + chr2.1:49320902-49320921 None:intergenic 40.0%
!! TTTTTGTTGTAAAGCGGAGG+AGG + chr2.1:49323328-49323347 None:intergenic 40.0%
AAATCCCTATCAGGGTAGGT+GGG - chr2.1:49323492-49323511 MS.gene64415:intron 45.0%
AACTTGGGTAACTGCTTTCC+AGG - chr2.1:49324536-49324555 MS.gene64415:intron 45.0%
AAGGCAAGGGTTACTGCAAA+AGG - chr2.1:49323520-49323539 MS.gene64415:intron 45.0%
AATTTGGCTGCTCCAAATGC+TGG - chr2.1:49323346-49323365 MS.gene64415:intron 45.0%
AGCATTGCCTGATAACACTG+TGG - chr2.1:49323207-49323226 MS.gene64415:intron 45.0%
AGCCAGACTGGATAACAATG+AGG - chr2.1:49324319-49324338 MS.gene64415:intron 45.0%
ATCCTTCAGTTCCCATCGTA+AGG - chr2.1:49323908-49323927 MS.gene64415:intron 45.0%
CAGGAGGATGATGAGAAGTT+TGG - chr2.1:49324618-49324637 MS.gene64415:CDS 45.0%
CATAGCGTGATGAGACGAAA+CGG + chr2.1:49320859-49320878 None:intergenic 45.0%
CGAAGTCAGGAGACACAAAA+TGG - chr2.1:49324430-49324449 MS.gene64415:intron 45.0%
CTATCACTAATCACTCTCCC+AGG + chr2.1:49322405-49322424 None:intergenic 45.0%
GCCAGACTGGATAACAATGA+GGG - chr2.1:49324320-49324339 MS.gene64415:intron 45.0%
GCTATAGGTATTACACGTGC+TGG + chr2.1:49323466-49323485 None:intergenic 45.0%
GCTCAAATCCAGGATCATTC+AGG - chr2.1:49324510-49324529 MS.gene64415:intron 45.0%
GCTCCAAATGCTGGTAGTAA+TGG - chr2.1:49323355-49323374 MS.gene64415:intron 45.0%
GGATTACATCAGCGGTACTA+TGG - chr2.1:49321829-49321848 MS.gene64415:CDS 45.0%
GGGCAAGCTGTGTAACAAAA+TGG + chr2.1:49324372-49324391 None:intergenic 45.0%
GGTATAGAACCATCCTCATC+TGG + chr2.1:49323796-49323815 None:intergenic 45.0%
GTAATCGAGAAGCTGAACGA+TGG + chr2.1:49320934-49320953 None:intergenic 45.0%
GTCGATCTCCAATCATCAGA+GGG + chr2.1:49324392-49324411 None:intergenic 45.0%
GTTCCCATCGTAAGGAAGAA+TGG - chr2.1:49323916-49323935 MS.gene64415:intron 45.0%
TAAATCCCTATCAGGGTAGG+TGG - chr2.1:49323491-49323510 MS.gene64415:intron 45.0%
TAACTGCTTTCCAGGAAGCA+GGG - chr2.1:49324544-49324563 MS.gene64415:CDS 45.0%
TACCCGTATTTCACCTCCAT+CGG + chr2.1:49323611-49323630 None:intergenic 45.0%
TAGATGCAACCAGGAGTTTG+AGG - chr2.1:49324461-49324480 MS.gene64415:intron 45.0%
TCAGGCAATGCTTTCTGAAC+TGG + chr2.1:49323199-49323218 None:intergenic 45.0%
TCTAAGGACATCACTCATGG+GGG - chr2.1:49324231-49324250 MS.gene64415:intron 45.0%
TGCCCATTACTACCAGCATT+TGG + chr2.1:49323271-49323290 None:intergenic 45.0%
TGGTATGGAGGTTGAACTGT+TGG + chr2.1:49323394-49323413 None:intergenic 45.0%
TTCCGATGGAGGTGAAATAC+GGG - chr2.1:49323606-49323625 MS.gene64415:intron 45.0%
TTCCTTACGATGGGAACTGA+AGG + chr2.1:49323913-49323932 None:intergenic 45.0%
TTCTTAAGGTCTGAGCCTCA+GGG + chr2.1:49324167-49324186 None:intergenic 45.0%
TTGGGGTGAATTCTGCAACA+GGG - chr2.1:49324005-49324024 MS.gene64415:intron 45.0%
TTTCACCTCCATCGGAATCA+AGG + chr2.1:49323603-49323622 None:intergenic 45.0%
! CTCCACGAGCATTGTTATAG+CGG + chr2.1:49323555-49323574 None:intergenic 45.0%
! GTTAGCTTCTTGTGGCTCTT+GGG - chr2.1:49322601-49322620 MS.gene64415:intron 45.0%
! TGTTAGCTTCTTGTGGCTCT+TGG - chr2.1:49322600-49322619 MS.gene64415:intron 45.0%
! TTTGGGGTGAATTCTGCAAC+AGG - chr2.1:49324004-49324023 MS.gene64415:intron 45.0%
!! ACGCTGTTGGTGAGAGTTTT+TGG + chr2.1:49320814-49320833 None:intergenic 45.0%
!! CCCATTTTAGCAGTAAAGGC+TGG - chr2.1:49324069-49324088 MS.gene64415:intron 45.0%
!! TTCAAGAGATGGTGGATGCT+GGG - chr2.1:49324040-49324059 MS.gene64415:intron 45.0%
AACTGCTTTCCAGGAAGCAG+GGG - chr2.1:49324545-49324564 MS.gene64415:CDS 50.0%
AAGCAGGGGAGGAGATTATG+GGG - chr2.1:49324559-49324578 MS.gene64415:CDS 50.0%
ACAGCTTGCCCTCTGATGAT+TGG - chr2.1:49324381-49324400 MS.gene64415:intron 50.0%
AGGCTCAGACCTTAAGAACC+TGG - chr2.1:49324169-49324188 MS.gene64415:intron 50.0%
CAACCTCCTCCGCTTTACAA+AGG - chr2.1:49323322-49323341 MS.gene64415:intron 50.0%
CCTGGATTTGAGCTTGGAGA+AGG + chr2.1:49324503-49324522 None:intergenic 50.0%
CCTTCTCCAAGCTCAAATCC+AGG - chr2.1:49324500-49324519 MS.gene64415:intron 50.0%
CTCAACGACCGAGTCAATAC+TGG - chr2.1:49320891-49320910 MS.gene64415:CDS 50.0%
CTTTGTAAAGCGGAGGAGGT+TGG + chr2.1:49323414-49323433 None:intergenic 50.0%
GAACCAGCCACAGTGTTATC+AGG + chr2.1:49323217-49323236 None:intergenic 50.0%
GAAGAAGACGGTAACGCTGT+TGG + chr2.1:49320827-49320846 None:intergenic 50.0%
GAAGCAGGGGAGGAGATTAT+GGG - chr2.1:49324558-49324577 MS.gene64415:CDS 50.0%
GATCTCCTTGATTCCGATGG+AGG - chr2.1:49323595-49323614 MS.gene64415:intron 50.0%
GCACCACGACCTTTGTAAAG+CGG + chr2.1:49323424-49323443 None:intergenic 50.0%
GCAGTGTGATAGATGCAACC+AGG - chr2.1:49324452-49324471 MS.gene64415:intron 50.0%
GCCCTCATTGTTATCCAGTC+TGG + chr2.1:49324324-49324343 None:intergenic 50.0%
GGGCAACCGTATCATTCATG+AGG - chr2.1:49324340-49324359 MS.gene64415:intron 50.0%
GGTCGATCTCCAATCATCAG+AGG + chr2.1:49324393-49324412 None:intergenic 50.0%
GGTGAATTCTGCAACAGGGA+AGG - chr2.1:49324009-49324028 MS.gene64415:intron 50.0%
GTAACTGCTTTCCAGGAAGC+AGG - chr2.1:49324543-49324562 MS.gene64415:intron 50.0%
GTTCTTAAGGTCTGAGCCTC+AGG + chr2.1:49324168-49324187 None:intergenic 50.0%
TATCGCCGGAATAGCGTTTG+CGG + chr2.1:49320727-49320746 None:intergenic 50.0%
TCTCACCGCAAACGCTATTC+CGG - chr2.1:49320719-49320738 MS.gene64415:CDS 50.0%
TGCAGTAACCCTTGCCTTGA+TGG + chr2.1:49323518-49323537 None:intergenic 50.0%
TGTTGTAAAGCGGAGGAGGT+TGG + chr2.1:49323324-49323343 None:intergenic 50.0%
TTGCCTGATAACACTGTGGC+TGG - chr2.1:49323211-49323230 MS.gene64415:intron 50.0%
! GATGAAGATCTAGGGCGTTC+AGG - chr2.1:49324294-49324313 MS.gene64415:intron 50.0%
!! CTTCAAGAGATGGTGGATGC+TGG - chr2.1:49324039-49324058 MS.gene64415:intron 50.0%
!! TAAAGCGGAGGAGGTTGGTA+TGG + chr2.1:49323319-49323338 None:intergenic 50.0%
!! TCAAGAGATGGTGGATGCTG+GGG - chr2.1:49324041-49324060 MS.gene64415:intron 50.0%
ATGGCCCACCTACCCTGATA+GGG + chr2.1:49323499-49323518 None:intergenic 55.0%
CCACGACCTTTGTAAAGCGG+AGG + chr2.1:49323421-49323440 None:intergenic 55.0%
CCTCCGCTTTACAAAGGTCG+TGG - chr2.1:49323418-49323437 MS.gene64415:intron 55.0%
CGACCTTTGTAAAGCGGAGG+AGG + chr2.1:49323418-49323437 None:intergenic 55.0%
CGCCGCTATAACAATGCTCG+TGG - chr2.1:49323550-49323569 MS.gene64415:intron 55.0%
GAGCTTTGCCCAGATGAGGA+TGG - chr2.1:49323784-49323803 MS.gene64415:intron 55.0%
GCTATTCCGGCGATAATCGC+CGG - chr2.1:49320732-49320751 MS.gene64415:CDS 55.0%
GGAAGCAGGGGAGGAGATTA+TGG - chr2.1:49324557-49324576 MS.gene64415:CDS 55.0%
GGTTGAGCTTTGCCCAGATG+AGG - chr2.1:49323780-49323799 MS.gene64415:intron 55.0%
GTCTGAGCCTCAGGGAAATC+TGG + chr2.1:49324159-49324178 None:intergenic 55.0%
GTGATGAGACGAAACGGCGT+CGG + chr2.1:49320853-49320872 None:intergenic 55.0%
TAATCTCCTCCCCTGCTTCC+TGG + chr2.1:49324557-49324576 None:intergenic 55.0%
TAGGTGGGCCATCAAGGCAA+GGG - chr2.1:49323507-49323526 MS.gene64415:intron 55.0%
!! AGCGGAGGAGGTTGGTATTG+AGG + chr2.1:49323316-49323335 None:intergenic 55.0%
!! GACTCGGTCGTTGAGTTGAG+CGG + chr2.1:49320886-49320905 None:intergenic 55.0%
GATGGCCCACCTACCCTGAT+AGG + chr2.1:49323500-49323519 None:intergenic 60.0%
GTAGGTGGGCCATCAAGGCA+AGG - chr2.1:49323506-49323525 MS.gene64415:intron 60.0%
TCAGGGTAGGTGGGCCATCA+AGG - chr2.1:49323501-49323520 MS.gene64415:intron 60.0%
TGCTTTCCAGGAAGCAGGGG+AGG - chr2.1:49324548-49324567 MS.gene64415:CDS 60.0%
! CGGCGTCGGAGAGAAGAAGA+CGG + chr2.1:49320839-49320858 None:intergenic 60.0%
!! AGCGGAGGAGGTTGGTATGG+AGG + chr2.1:49323406-49323425 None:intergenic 60.0%
ACGTCGCCGGCGATTATCGC+CGG + chr2.1:49320741-49320760 None:intergenic 65.0%
GGCGTTCAGGCAAGCCAGAC+TGG - chr2.1:49324307-49324326 MS.gene64415:intron 65.0%
!! CGGTTTGGCGTCGACGTCGC+CGG + chr2.1:49320754-49320773 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 49320708 49324815 49320708 ID=MS.gene64415
chr2.1 mRNA 49320708 49324815 49320708 ID=MS.gene64415.t1;Parent=MS.gene64415
chr2.1 exon 49324544 49324815 49324544 ID=MS.gene64415.t1.exon1;Parent=MS.gene64415.t1
chr2.1 CDS 49324544 49324815 49324544 ID=cds.MS.gene64415.t1;Parent=MS.gene64415.t1
chr2.1 exon 49320708 49322412 49320708 ID=MS.gene64415.t1.exon2;Parent=MS.gene64415.t1
chr2.1 CDS 49320708 49322412 49320708 ID=cds.MS.gene64415.t1;Parent=MS.gene64415.t1
Gene Sequence

>MS.gene64415

ATGGCGGTAAATCTCACCGCAAACGCTATTCCGGCGATAATCGCCGGCGACGTCGACGCCAAACCGTTACTTCAAGTTCTCGACATTGCAACAATCGTAAGCACCAAAAACTCTCACCAACAGCGTTACCGTCTTCTTCTCTCCGACGCCGTTTCGTCTCATCACGCTATGCTCGCCGCTCAACTCAACGACCGAGTCAATACTGGACGAGTTAAGCAAGGTTCCATCGTTCAGCTTCTCGATTACATTTGCACTCCGCTTCAGAATCGCAAGTATTACTCTTCGCTTCTTTTTTTGTTGCTTAATTTGTTCTTCGATTAAGTGATTAATTGATTATCGGTGTATTTAGATTGTTTCGATTTGAATTTTGTGTGCGTTTTGCTTTTTAGGTTATTTTAAGATGAATCTAGAACGTTCTAGAAGTTGCGTTTGAAAGAATTAGTGTATGAATTAGGATATGATACTTCGTTGATGAAATGTGATAGTTGAACTAAGCTTTAGTTTCTTGTGATAGTTGAAATTTGAATTTCATGTGATTTTCACTTTTTATTAGGTCATTTCAAATTTGAACTTAAACGTTCTAGAAGTTGCATTTGTAAGAATTAGGTGATGGAATCTTATATTGATGAAATGTGATATTTGAACTATGTTCTAGATTCTTGTGATAGTTGATTTGAGATTGTTGAAATTTGAATTTTATGTGCATTTCACTTTTTAGGTCATTTCGAGTTTGAACCTAATCGTTCTAGAAGTTGTATTTCTAAGAATTAGGATATGGAACCTTGTTGATGAAATGTGATAACTGACTTTTAGTTTCTTGTGATAGTTTAATTAAGATTTTGTTGCAATTTGAATTTTATGTACATTTCACTTTTTAGGTCATTCTAATTTTGAACATAAAACGTTCTGATAGATGTATTTGGAATCAGTGTTGTTAGATCGTGGAAAATAGTGTCTATTTGACAAGATTTTGAACTGAAGTGTATCGTGAAACAATAGTGATTTGTTCTAATTGTGCCATGTTTTGACAGCTATTTGACAACACTGTTGTAATAGTTCTATTGTTTACTTGAGTTTTAGTTTCTTGTAATACATGTTGTCAGAAGTGCTTTAGTTCAAATGGATTACATCAGCGGTACTATGGATTACAAAAGTGTTATTAACAATGTTTTAGTTCAAATTTTCTTAAGACACGTTTGAAATTTGTGTTGTCAATCGCATATTGCATAAAATAGCAGTTTGTTCAAATTCCGCCACAATAAAGTGTTATAGTGCCGCTATAGTTGCTATTTGACTACACTTTGTACTAAATAGTGTATTGTGAAACAATAACAATTTGTTCAAAAATTGTGTGATGCTATAGTAGCTATTTGACAATTGTGTGATGCTATAGTAGCTATTTGACAATAACACTGTTGTAATCCATTGCTTTAGTTCAAAATTTGTTGCTTAAGTTTTAGTTTCTTGTATCCCTTGGGTTAATTGTTAGTGTAAGAATTAGGATATGATAACTCAGTGATGAATTGTCAATTGCGATAGTTGAATTAAGTTTTAGTTTCTTGTCATAGTTTAAGTAAGATTGTTGTGATTTGAATTTTATGTGAAATTCAGTTTTGTATCATTTGAATTTTCAACCTAAAATGTTATTGATGATACAATTGATTATTTTACACAAGTGTTAGCTTCTTCTATCTCCTGGGAGAGTGATTAGTGATAGTATTAGGATATGGAATCTCAGTGATGAATTGTGATAGTTAAATTACGTTTTGGTTTCTTGTGATAGTTTACTTAAGATTGCTGTGTTTGAGTTTTATGCGAAATTCAGTTTTTACATCATTCCAAATTTTCAACCTAAAATGTTATGGATGATGCATTTGGTTATTTTACATAAGTGTTAGCTTCTTGTGGCTCTTGGGCGAATGATTAATGTTATGGAACCTCGGTAGTGAACTATGATAATCTAACTAAGTTTTAGTCTCTTGTGATAGTCTTGTTAAGATTGTTGCGATTTGAATATTATGTGAATTTCAGTTTTTGCATCATTCCAAAATTTCAACCTAAAACATTGTAGATGATGCATTTGGTTACTTTACATAAGTGTTATATTCTTTGGTCACTTGACAAATGATGAGTGATATGTAACTTCAGTGAAGAATTGTGGTAGTTGAATTAAGTTTTAGTTTTTTGTGATAGTTTAATTAAGATTGTTGCGATTTGAATTTTATGTGAATTTCGTTGTTTGCATCATTCCAATTTTCACCCTAAACATTATAGATGATACATTAGAGCTTATGGATGTTTAAGAGTTGAAAGAATGTTACAGATGAAATGCATCATAACTGACTTTAGGTTTATTCTCTAAACTTGATTTGTGTGCTTCTGTGTTTGTTTTTCCTTGTACAGGATTATTATGGTGCTTAACATGGAAACCATAATACCTGATTGTGAAATCATTGGGAATCCAAAGTCATTTGTGGATTCAGAGTTACCAGTTCAGAAAGCATTGCCTGATAACACTGTGGCTGGTTCGTCCAGAAATATTAATAATAATTTGGCTGCTCAAAATGCTGGTAGTAATGGGCAGAATTTCAGGCCAACAGTTCAACCTCAATACCAACCTCCTCCGCTTTACAACAAAAATTTGGCTGCTCCAAATGCTGGTAGTAATGGGCAGAATTTCAGGCCAACAGTTCAACCTCCATACCAACCTCCTCCGCTTTACAAAGGTCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGTGTAATACCTATAGCTGCTTTAAATCCCTATCAGGGTAGGTGGGCCATCAAGGCAAGGGTTACTGCAAAAGGAGATTTGCGCCGCTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTTGATCTCCTTGATTCCGATGGAGGTGAAATACGGGTAACTTGCTTTAATGCTGTTGTTGACCGTTTCTATGAAGCAATTGAGGTTGGTAAAGTTTACTTGATATCGAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAATCATTTGAAGAATGAATGGGAAATTATGCTGGATTTAAATTCAACGGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAACAATTCTCCTTCAGACCTATCAGTGACATTGAGACTGTTGAGAGTAATGCTATCCTTGATGTTATTGGGGTTGTGACATCTGTAAATCCTTCAGTTCCCATCGTAAGGAAGAATGGAATGGAAACACTGAGAAGGGTTTTGAATCTAAAGGACAATTCTGGCAAGAGTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAAAGCTTCAAGAGATGGTGGATGCTGGGGTTTTCCCCATTTTAGCAGTAAAGGCTGGTAAGGTTAATGAATTCAGTGGAAAGTCTATAGGCTCTATTTCTACTACACAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAGACCTTAAGAACCTGGTTTGATCAAGTTGGGAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATCACTCATGGGGGACCCAAGAATGAGATACGCAAAACTGTGTCTCAAATTAAAGATGAAGATCTAGGGCGTTCAGGCAAGCCAGACTGGATAACAATGAGGGCAACCGTATCATTCATGAGGACCGATCCATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACCGTGCAATAAGAAAGTGACGAAGTCAGGAGACACAAAATGGCAGTGTGATAGATGCAACCAGGAGTTTGAGGAATGTGATTATCGTTACCTTCTCCAAGCTCAAATCCAGGATCATTCAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAGGAGATTATGGGGTACTCAGCAAAAGATCTGTATGTGTTGAAGTATGAACAGGAGGATGATGAGAAGTTTGGAGATATAATTAAGAGTAGACTCTTCAATGAGTTTGTGTTTAGGCTGAAAATCAAAGAGGAATTATATAATGACGAACAGAAGGTGAAGATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGGTACATGCTTGATTTTATTTCCAAGTTCCGTAGGCAGTGA
Protein sequence

>MS.gene64415.t1

MAVNLTANAIPAIIAGDVDAKPLLQVLDIATIVSTKNSHQQRYRLLLSDAVSSHHAMLAAQLNDRVNTGRVKQGSIVQLLDYICTPLQNRKIIMVLNMETIIPDCEIIGNPKSFVDSELPVQKALPDNTVAGSSRNINNNLAAQNAGSNGQNFRPTVQPQYQPPPLYNKNLAAPNAGSNGQNFRPTVQPPYQPPPLYKGRGAVMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTVELCPDEDGSIPRQQFSFRPISDIETVESNAILDVIGVVTSVNPSVPIVRKNGMETLRRVLNLKDNSGKSVELTLWGEFCNREGQKLQEMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQTLRTWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEDLGRSGKPDWITMRATVSFMRTDPFCYTACPLMIGDRPCNKKVTKSGDTKWQCDRCNQEFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEIMGYSAKDLYVLKYEQEDDEKFGDIIKSRLFNEFVFRLKIKEELYNDEQKVKITVVKADKVNYSAESRYMLDFISKFRRQ