Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044533.t1 | XP_003609137.1 | 100 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 6.00E-78 | 300.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044533.t1 | P49592 | 83.8 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 2.7e-66 | 252.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044533.t1 | G7JT12 | 100.0 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 4.4e-78 | 300.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044533.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene87064 | MS.gene044533 | PPI |
MS.gene76728 | MS.gene044533 | PPI |
MS.gene044533 | MS.gene42075 | PPI |
MS.gene044533 | MS.gene82237 | PPI |
MS.gene044533 | MS.gene77045 | PPI |
MS.gene044533 | MS.gene48819 | PPI |
MS.gene044533 | MS.gene87743 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044533.t1 | MTR_4g112380 | 100.000 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 7.71e-114 | 319 |
MS.gene044533.t1 | MTR_2g056000 | 85.621 | 153 | 22 | 0 | 1 | 153 | 31 | 183 | 3.26e-97 | 278 |
MS.gene044533.t1 | MTR_1g072790 | 41.176 | 85 | 48 | 1 | 12 | 94 | 30 | 114 | 2.05e-17 | 75.1 |
MS.gene044533.t1 | MTR_0392s0020 | 31.250 | 112 | 71 | 1 | 5 | 110 | 12 | 123 | 4.49e-16 | 70.5 |
MS.gene044533.t1 | MTR_7g100650 | 37.500 | 80 | 50 | 0 | 12 | 91 | 27 | 106 | 6.74e-16 | 70.9 |
MS.gene044533.t1 | MTR_3g058980 | 37.179 | 78 | 49 | 0 | 12 | 89 | 28 | 105 | 7.87e-16 | 71.2 |
MS.gene044533.t1 | MTR_7g061270 | 38.462 | 78 | 48 | 0 | 12 | 89 | 27 | 104 | 8.54e-16 | 70.5 |
MS.gene044533.t1 | MTR_5g095740 | 36.250 | 80 | 51 | 0 | 12 | 91 | 24 | 103 | 1.28e-15 | 70.5 |
MS.gene044533.t1 | MTR_4g133952 | 37.975 | 79 | 49 | 0 | 11 | 89 | 58 | 136 | 1.45e-15 | 71.2 |
MS.gene044533.t1 | MTR_4g119500 | 30.682 | 88 | 61 | 0 | 12 | 99 | 23 | 110 | 4.88e-15 | 67.8 |
MS.gene044533.t1 | MTR_1g039040 | 28.723 | 94 | 67 | 0 | 6 | 99 | 1 | 94 | 5.16e-15 | 68.9 |
MS.gene044533.t1 | MTR_2g026710 | 32.530 | 83 | 56 | 0 | 7 | 89 | 13 | 95 | 3.17e-14 | 66.6 |
MS.gene044533.t1 | MTR_1g083070 | 31.646 | 79 | 54 | 0 | 13 | 91 | 6 | 84 | 4.42e-14 | 65.1 |
MS.gene044533.t1 | MTR_8g093920 | 29.545 | 88 | 62 | 0 | 12 | 99 | 41 | 128 | 7.68e-14 | 66.2 |
MS.gene044533.t1 | MTR_8g091720 | 32.143 | 84 | 57 | 0 | 5 | 88 | 22 | 105 | 1.17e-13 | 65.9 |
MS.gene044533.t1 | MTR_1g088860 | 32.051 | 78 | 53 | 0 | 12 | 89 | 37 | 114 | 2.99e-13 | 64.3 |
MS.gene044533.t1 | MTR_4g133938 | 35.135 | 74 | 48 | 0 | 16 | 89 | 24 | 97 | 5.94e-13 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044533.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
MS.gene044533.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
MS.gene044533.t1 | AT5G23090 | 83.766 | 154 | 23 | 1 | 1 | 152 | 1 | 154 | 1.34e-93 | 268 |
MS.gene044533.t1 | AT5G23090 | 83.117 | 154 | 23 | 2 | 1 | 152 | 1 | 153 | 5.02e-91 | 261 |
MS.gene044533.t1 | AT5G08190 | 88.652 | 141 | 16 | 0 | 1 | 141 | 1 | 141 | 4.62e-84 | 244 |
MS.gene044533.t1 | AT5G08190 | 87.943 | 141 | 16 | 1 | 1 | 141 | 1 | 140 | 1.94e-81 | 237 |
MS.gene044533.t1 | AT5G23090 | 75.974 | 154 | 22 | 2 | 1 | 152 | 1 | 141 | 5.10e-81 | 236 |
MS.gene044533.t1 | AT2G38880 | 31.068 | 103 | 71 | 0 | 12 | 114 | 22 | 124 | 4.40e-17 | 73.2 |
MS.gene044533.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.56e-16 | 72.0 |
MS.gene044533.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
MS.gene044533.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
MS.gene044533.t1 | AT2G38880 | 32.381 | 105 | 69 | 1 | 12 | 114 | 22 | 126 | 1.68e-16 | 72.0 |
MS.gene044533.t1 | AT2G38880 | 34.409 | 93 | 59 | 1 | 12 | 102 | 22 | 114 | 2.05e-16 | 72.0 |
MS.gene044533.t1 | AT2G38880 | 34.409 | 93 | 59 | 1 | 12 | 102 | 22 | 114 | 2.05e-16 | 72.0 |
MS.gene044533.t1 | AT4G14540 | 31.000 | 100 | 69 | 0 | 12 | 111 | 22 | 121 | 2.54e-16 | 72.0 |
MS.gene044533.t1 | AT3G53340 | 35.000 | 100 | 64 | 1 | 12 | 111 | 30 | 128 | 4.80e-16 | 71.6 |
MS.gene044533.t1 | AT3G53340 | 35.000 | 100 | 64 | 1 | 12 | 111 | 30 | 128 | 4.80e-16 | 71.6 |
MS.gene044533.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
MS.gene044533.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
MS.gene044533.t1 | AT2G37060 | 36.250 | 80 | 51 | 0 | 12 | 91 | 31 | 110 | 7.51e-16 | 70.9 |
MS.gene044533.t1 | AT2G38880 | 35.294 | 85 | 53 | 1 | 12 | 94 | 22 | 106 | 8.84e-16 | 69.3 |
MS.gene044533.t1 | AT5G47640 | 30.631 | 111 | 76 | 1 | 12 | 122 | 28 | 137 | 9.96e-16 | 70.9 |
MS.gene044533.t1 | AT5G47670 | 37.975 | 79 | 49 | 0 | 11 | 89 | 29 | 107 | 1.53e-15 | 70.9 |
MS.gene044533.t1 | AT5G47670 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.15e-15 | 70.9 |
MS.gene044533.t1 | AT5G47670 | 37.037 | 81 | 51 | 0 | 11 | 91 | 58 | 138 | 2.15e-15 | 70.9 |
MS.gene044533.t1 | AT3G53340 | 37.179 | 78 | 49 | 0 | 12 | 89 | 30 | 107 | 7.52e-15 | 67.0 |
MS.gene044533.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
MS.gene044533.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
MS.gene044533.t1 | AT2G38880 | 31.250 | 96 | 66 | 0 | 12 | 107 | 22 | 117 | 1.88e-14 | 66.6 |
MS.gene044533.t1 | AT3G53340 | 32.955 | 88 | 59 | 0 | 12 | 99 | 30 | 117 | 2.46e-14 | 66.6 |
MS.gene044533.t1 | AT3G53340 | 32.955 | 88 | 59 | 0 | 12 | 99 | 30 | 117 | 2.46e-14 | 66.6 |
MS.gene044533.t1 | AT1G21970 | 32.099 | 81 | 55 | 0 | 11 | 91 | 59 | 139 | 4.51e-14 | 67.4 |
MS.gene044533.t1 | AT1G09030 | 31.250 | 80 | 55 | 0 | 12 | 91 | 4 | 83 | 1.69e-13 | 63.9 |
MS.gene044533.t1 | AT2G13570 | 32.468 | 77 | 52 | 0 | 12 | 88 | 37 | 113 | 5.51e-13 | 64.3 |
MS.gene044533.t1 | AT2G47810 | 30.263 | 76 | 53 | 0 | 12 | 87 | 52 | 127 | 9.59e-12 | 59.7 |
Find 38 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCTAGCTAATCTAATTT+TGG | 0.141370 | 8.1:-14537780 | None:intergenic |
TGGTCACCATCTGGCTGTTT+TGG | 0.240495 | 8.1:-14537760 | None:intergenic |
ATACTTTAAAAGCTGGTAAA+TGG | 0.274950 | 8.1:+14537641 | MS.gene044533:CDS |
TTTCCCCAGGTGCTTGGATT+TGG | 0.324476 | 8.1:+14536799 | MS.gene044533:intron |
CAGCAAGATACTTTAAAAGC+TGG | 0.415421 | 8.1:+14537634 | MS.gene044533:intron |
TGCGCCTGAGCACGTATTGA+AGG | 0.421286 | 8.1:+14536028 | MS.gene044533:CDS |
AGCACTCGATCAATAGATCT+TGG | 0.421579 | 8.1:-14535254 | None:intergenic |
CTCTCTGCTACATACTTCAT+TGG | 0.429101 | 8.1:-14535991 | None:intergenic |
TATGTAGCAGAGAGGACAAA+AGG | 0.468267 | 8.1:+14536000 | MS.gene044533:CDS |
GCACGTATTGAAGGCTCTAC+AGG | 0.479345 | 8.1:+14536037 | MS.gene044533:CDS |
CGATTTGCCAACGATATCCA+TGG | 0.490386 | 8.1:-14534387 | None:intergenic |
GAGGCCCGCGCTAGGATGAA+TGG | 0.491671 | 8.1:+14537724 | MS.gene044533:CDS |
CCCGCGCTAGGATGAATGGT+GGG | 0.499784 | 8.1:+14537728 | MS.gene044533:CDS |
CTCGCCACGCGGACATCTTG+CGG | 0.511342 | 8.1:-14535225 | None:intergenic |
GCACTCGATCAATAGATCTT+GGG | 0.526789 | 8.1:-14535253 | None:intergenic |
AGGTTAAATTATGGATCCCA+TGG | 0.527047 | 8.1:+14534370 | None:intergenic |
CCCACCATTCATCCTAGCGC+GGG | 0.529331 | 8.1:-14537728 | None:intergenic |
AGAGCCTTCAATACGTGCTC+AGG | 0.530619 | 8.1:-14536032 | None:intergenic |
TGTTTGCAGAGGCCCGCGCT+AGG | 0.547845 | 8.1:+14537716 | MS.gene044533:CDS |
CTATTGATCGAGTGCTGTGT+AGG | 0.564923 | 8.1:+14535261 | MS.gene044533:CDS |
CCCCACCATTCATCCTAGCG+CGG | 0.565574 | 8.1:-14537729 | None:intergenic |
AAAGCTGGTAAATGGAGCAA+TGG | 0.581041 | 8.1:+14537649 | MS.gene044533:CDS |
AGCATACGAACAACACAAGC+TGG | 0.587192 | 8.1:+14536846 | MS.gene044533:CDS |
GTTTATAAATCTCATCTCAT+CGG | 0.592523 | 8.1:+14535965 | MS.gene044533:CDS |
ATGGATCCCATGGATATCGT+TGG | 0.592534 | 8.1:+14534380 | MS.gene044533:CDS |
GGATATCGTTGGCAAATCGA+AGG | 0.607995 | 8.1:+14534391 | MS.gene044533:CDS |
GATTTGCCAACGATATCCAT+GGG | 0.608748 | 8.1:-14534386 | None:intergenic |
AAGCATTAGCAGAACAACAA+AGG | 0.632993 | 8.1:+14537692 | MS.gene044533:CDS |
GCCCGCGCTAGGATGAATGG+TGG | 0.635837 | 8.1:+14537727 | MS.gene044533:CDS |
ACAACACAAGCTGGAGACCA+TGG | 0.639569 | 8.1:+14536855 | MS.gene044533:CDS |
GAAGATGCTTCGCTTCCCAA+AGG | 0.654221 | 8.1:+14534413 | MS.gene044533:CDS |
ATTGCTCCAAAACAGCCAGA+TGG | 0.666319 | 8.1:+14537754 | MS.gene044533:CDS |
CCGCGCTAGGATGAATGGTG+GGG | 0.672298 | 8.1:+14537729 | MS.gene044533:CDS |
ACAACAAAGGATGTTTGCAG+AGG | 0.686768 | 8.1:+14537705 | MS.gene044533:CDS |
CTTGGGTGTCTCTCGCCACG+CGG | 0.690389 | 8.1:-14535236 | None:intergenic |
CAATGAAGTATGTAGCAGAG+AGG | 0.698906 | 8.1:+14535992 | MS.gene044533:CDS |
CAATGGAGCTGAGATGACTG+AGG | 0.705174 | 8.1:+14537666 | MS.gene044533:CDS |
GTTACCGCAAGATGTCCGCG+TGG | 0.763213 | 8.1:+14535221 | MS.gene044533:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATAATGATAATTAATAG+TGG | + | chr8.1:14535068-14535087 | MS.gene044533:intron | 10.0% |
!!! | ATGTTTTTTTATTTTTTTTG+AGG | + | chr8.1:14535531-14535550 | MS.gene044533:intron | 10.0% |
!!! | ATTACTAATATTTGTTTTAT+CGG | + | chr8.1:14534451-14534470 | MS.gene044533:intron | 10.0% |
!!! | ATTTATTTCAATTCTAAAAT+CGG | + | chr8.1:14536673-14536692 | MS.gene044533:intron | 10.0% |
!!! | TGTTTTTTTATTTTTTTTGA+GGG | + | chr8.1:14535532-14535551 | MS.gene044533:intron | 10.0% |
!! | AACAATGACAAAAATAATTA+AGG | + | chr8.1:14535194-14535213 | MS.gene044533:CDS | 15.0% |
!! | AATAGATCTTTAATCAATAA+AGG | - | chr8.1:14536394-14536413 | None:intergenic | 15.0% |
!! | ATTAAATTTGACTATTCAAA+TGG | + | chr8.1:14536122-14536141 | MS.gene044533:intron | 15.0% |
!! | CTAAGATTATCAAAAATAAA+TGG | - | chr8.1:14535896-14535915 | None:intergenic | 15.0% |
!! | CTTAACTAAAAAAAAACTAT+GGG | - | chr8.1:14536519-14536538 | None:intergenic | 15.0% |
!! | GCAAATTTATATAATCTTAT+GGG | - | chr8.1:14535750-14535769 | None:intergenic | 15.0% |
!! | TTAAATTTGACTATTCAAAT+GGG | + | chr8.1:14536123-14536142 | MS.gene044533:intron | 15.0% |
!! | TTTAAAAACACAAACTAAAA+TGG | - | chr8.1:14537052-14537071 | None:intergenic | 15.0% |
!!! | AACATTTTAATTATAATCCA+TGG | - | chr8.1:14535489-14535508 | None:intergenic | 15.0% |
!!! | GAGTTTATTATTTTATTTCA+GGG | + | chr8.1:14535339-14535358 | MS.gene044533:intron | 15.0% |
!!! | GTTTTTTTATTTTTTTTGAG+GGG | + | chr8.1:14535533-14535552 | MS.gene044533:intron | 15.0% |
!!! | TAAATTTGTTTTGAATGAAA+TGG | - | chr8.1:14536658-14536677 | None:intergenic | 15.0% |
!!! | TGAGTTTATTATTTTATTTC+AGG | + | chr8.1:14535338-14535357 | MS.gene044533:intron | 15.0% |
!!! | TTTAGTTTGTGTTTTTAAAT+CGG | + | chr8.1:14537053-14537072 | MS.gene044533:intron | 15.0% |
!!! | TTTTACACTATTTTTTGTTT+TGG | - | chr8.1:14536985-14537004 | None:intergenic | 15.0% |
!! | AAAAGTAAAATCATATGCAA+TGG | - | chr8.1:14537571-14537590 | None:intergenic | 20.0% |
!! | AAACAGAAAAACATTAAACT+GGG | - | chr8.1:14534925-14534944 | None:intergenic | 20.0% |
!! | AAAGTGAAATGAAATAAATG+TGG | - | chr8.1:14536301-14536320 | None:intergenic | 20.0% |
!! | AATAATAACCAAATATCACT+AGG | - | chr8.1:14535579-14535598 | None:intergenic | 20.0% |
!! | ACAAATATTATATACTCTGA+TGG | - | chr8.1:14534787-14534806 | None:intergenic | 20.0% |
!! | AGACAGACATAAAATAAAAA+TGG | - | chr8.1:14535832-14535851 | None:intergenic | 20.0% |
!! | ATAACTACTAAGAAATATGT+AGG | - | chr8.1:14537302-14537321 | None:intergenic | 20.0% |
!! | ATTCATAATCAAAATTACCA+TGG | - | chr8.1:14536875-14536894 | None:intergenic | 20.0% |
!! | CCTGTTCAAAAAAAAAAAAA+CGG | - | chr8.1:14534691-14534710 | None:intergenic | 20.0% |
!! | CCTTAACTAAAAAAAAACTA+TGG | - | chr8.1:14536520-14536539 | None:intergenic | 20.0% |
!! | GGCAAATTTATATAATCTTA+TGG | - | chr8.1:14535751-14535770 | None:intergenic | 20.0% |
!! | TACTATATGACTGTATATTA+TGG | - | chr8.1:14535714-14535733 | None:intergenic | 20.0% |
!! | TTAATTTAGATTCAAATCTG+AGG | + | chr8.1:14535646-14535665 | MS.gene044533:intron | 20.0% |
!! | TTAGGATATAATTGGAAAAT+TGG | + | chr8.1:14534587-14534606 | MS.gene044533:intron | 20.0% |
!! | TTTAAATATGCAATGTCTTT+AGG | + | chr8.1:14534569-14534588 | MS.gene044533:intron | 20.0% |
!!! | AAATTTTTTTTAGGCTGTTT+AGG | + | chr8.1:14535852-14535871 | MS.gene044533:intron | 20.0% |
!!! | CAAGTATTCATACATTTTAA+AGG | - | chr8.1:14536959-14536978 | None:intergenic | 20.0% |
!!! | CAATGGACAATTTTTTAAAT+GGG | + | chr8.1:14535034-14535053 | MS.gene044533:intron | 20.0% |
!!! | CCATAGTTTTTTTTTAGTTA+AGG | + | chr8.1:14536517-14536536 | MS.gene044533:intron | 20.0% |
!!! | CTCTATTTTATTTGTTTCTA+GGG | + | chr8.1:14535127-14535146 | MS.gene044533:intron | 20.0% |
!!! | GTATTGAGTAGTTAAATTTT+AGG | - | chr8.1:14536358-14536377 | None:intergenic | 20.0% |
!!! | TGAGTTTCTTCTTTTATTTT+AGG | + | chr8.1:14535382-14535401 | MS.gene044533:intron | 20.0% |
!!! | TGTCTGTCTAAATTTTTTTT+AGG | + | chr8.1:14535843-14535862 | MS.gene044533:intron | 20.0% |
!!! | TTAGTTTGTGTTTTTAAATC+GGG | + | chr8.1:14537054-14537073 | MS.gene044533:intron | 20.0% |
! | AAACTCATATTCAGAATCTT+AGG | - | chr8.1:14534634-14534653 | None:intergenic | 25.0% |
! | AAATTGGATGAGGATATAAT+TGG | + | chr8.1:14534542-14534561 | MS.gene044533:intron | 25.0% |
! | AACTCATATTCAGAATCTTA+GGG | - | chr8.1:14534633-14534652 | None:intergenic | 25.0% |
! | ATACAGTCATATAGTATCTT+TGG | + | chr8.1:14535718-14535737 | MS.gene044533:intron | 25.0% |
! | ATCATATGGTATATTATGGT+TGG | - | chr8.1:14535681-14535700 | None:intergenic | 25.0% |
! | ATGGATCATATGGTATATTA+TGG | - | chr8.1:14535685-14535704 | None:intergenic | 25.0% |
! | CAAACAGAAAAACATTAAAC+TGG | - | chr8.1:14534926-14534945 | None:intergenic | 25.0% |
! | CAGAGATAAATATGTATGTA+AGG | - | chr8.1:14536612-14536631 | None:intergenic | 25.0% |
! | CCATTTAAAAAATTGTCCAT+TGG | - | chr8.1:14535036-14535055 | None:intergenic | 25.0% |
! | CTGTATATTATGGTGATTTA+TGG | - | chr8.1:14535704-14535723 | None:intergenic | 25.0% |
! | GATCTTTAATCAATAAAGGA+TGG | - | chr8.1:14536390-14536409 | None:intergenic | 25.0% |
! | GTTTATAAATCTCATCTCAT+CGG | + | chr8.1:14535965-14535984 | MS.gene044533:CDS | 25.0% |
! | TAATCGATCTAAAAACAAGA+CGG | - | chr8.1:14535772-14535791 | None:intergenic | 25.0% |
! | TATGTAGTGTTTATTGATCT+TGG | + | chr8.1:14537529-14537548 | MS.gene044533:intron | 25.0% |
! | TCAAGTATTCAGCATAAATA+CGG | - | chr8.1:14536901-14536920 | None:intergenic | 25.0% |
! | TCAATAAACGAAATCATATC+AGG | - | chr8.1:14536770-14536789 | None:intergenic | 25.0% |
! | TCATATGGTATATTATGGTT+GGG | - | chr8.1:14535680-14535699 | None:intergenic | 25.0% |
! | TTTATATAACAGTTGTCGAA+AGG | + | chr8.1:14535008-14535027 | MS.gene044533:intron | 25.0% |
!! | ACTCTACACTAACTTTTATT+TGG | - | chr8.1:14537014-14537033 | None:intergenic | 25.0% |
!! | ATACTTTAAAAGCTGGTAAA+TGG | + | chr8.1:14537641-14537660 | MS.gene044533:CDS | 25.0% |
!! | ATATGATTTTCCTCAAGTTT+TGG | + | chr8.1:14535092-14535111 | MS.gene044533:intron | 25.0% |
!! | CAAAGAGTGCAATTTAAAAA+CGG | - | chr8.1:14534723-14534742 | None:intergenic | 25.0% |
!! | GTTACTGAATAAGATTTTGT+TGG | + | chr8.1:14535925-14535944 | MS.gene044533:intron | 25.0% |
!! | TACTACTGTTTTGTGAAAAT+TGG | + | chr8.1:14534979-14534998 | MS.gene044533:intron | 25.0% |
!! | TTAATGTTTTTCTGTTTGCA+AGG | + | chr8.1:14534928-14534947 | MS.gene044533:intron | 25.0% |
!!! | AGTAGTTAAATTTTAGGTGT+TGG | - | chr8.1:14536352-14536371 | None:intergenic | 25.0% |
!!! | CAATGTCTTTAGGATATAAT+TGG | + | chr8.1:14534579-14534598 | MS.gene044533:intron | 25.0% |
!!! | CCAATGGACAATTTTTTAAA+TGG | + | chr8.1:14535033-14535052 | MS.gene044533:intron | 25.0% |
!!! | CCGTTTTTTTTTTTTTGAAC+AGG | + | chr8.1:14534688-14534707 | MS.gene044533:intron | 25.0% |
!!! | CTCTACACTAACTTTTATTT+GGG | - | chr8.1:14537013-14537032 | None:intergenic | 25.0% |
!!! | GCTCTATTTTATTTGTTTCT+AGG | + | chr8.1:14535126-14535145 | MS.gene044533:intron | 25.0% |
!!! | TAGTTTGTGTTTTTAAATCG+GGG | + | chr8.1:14537055-14537074 | MS.gene044533:intron | 25.0% |
!!! | TTTTTTGAGGGGAATTAAAA+TGG | + | chr8.1:14535544-14535563 | MS.gene044533:intron | 25.0% |
AACTCAAATAAATCCCAGAT+GGG | - | chr8.1:14537433-14537452 | None:intergenic | 30.0% | |
AAGTATTCAGCATAAATACG+GGG | - | chr8.1:14536899-14536918 | None:intergenic | 30.0% | |
AATAACAGATAAGAACCAGA+TGG | - | chr8.1:14536099-14536118 | None:intergenic | 30.0% | |
AATTGGAATCAATTCGTTGT+CGG | + | chr8.1:14534512-14534531 | MS.gene044533:intron | 30.0% | |
ACACCCCATTAAAATCTTTA+CGG | - | chr8.1:14537225-14537244 | None:intergenic | 30.0% | |
AGAACACCAAGCTATTTATT+GGG | - | chr8.1:14537368-14537387 | None:intergenic | 30.0% | |
AGTAAAATCATATGCAATGG+TGG | - | chr8.1:14537568-14537587 | None:intergenic | 30.0% | |
ATGGTGATTTATGGATCATA+TGG | - | chr8.1:14535695-14535714 | None:intergenic | 30.0% | |
ATGTAAACAAGCTATGCTTT+AGG | + | chr8.1:14536196-14536215 | MS.gene044533:intron | 30.0% | |
ATTAATTACAACCAGTTTGC+AGG | - | chr8.1:14536566-14536585 | None:intergenic | 30.0% | |
CAAGTATTCAGCATAAATAC+GGG | - | chr8.1:14536900-14536919 | None:intergenic | 30.0% | |
CATTGTATCATTAAGAACCT+TGG | - | chr8.1:14536179-14536198 | None:intergenic | 30.0% | |
GATAAATATGTATGTAAGGC+AGG | - | chr8.1:14536608-14536627 | None:intergenic | 30.0% | |
TGTTTAGGCTTACTAGATTA+CGG | + | chr8.1:14535867-14535886 | MS.gene044533:intron | 30.0% | |
! | AACAAATAAAATAGAGCGCT+TGG | - | chr8.1:14535123-14535142 | None:intergenic | 30.0% |
! | ACGATCAGTATATCTTTTCA+GGG | + | chr8.1:14535623-14535642 | MS.gene044533:intron | 30.0% |
! | TAGATGTTTTACTTAGCTTC+AGG | + | chr8.1:14534818-14534837 | MS.gene044533:intron | 30.0% |
!! | ACACCGTAAAGATTTTAATG+GGG | + | chr8.1:14537219-14537238 | MS.gene044533:intron | 30.0% |
!! | AGATTTTAATGGGGTGTTTT+CGG | + | chr8.1:14537228-14537247 | MS.gene044533:intron | 30.0% |
!! | CACACCGTAAAGATTTTAAT+GGG | + | chr8.1:14537218-14537237 | MS.gene044533:intron | 30.0% |
!! | TTAATTTTAACAGACAGCAG+AGG | - | chr8.1:14537274-14537293 | None:intergenic | 30.0% |
!!! | ATGTCGACAAATTTTTTCCA+TGG | + | chr8.1:14535469-14535488 | MS.gene044533:intron | 30.0% |
!!! | ATTTTAGGTGTTGGAATGTT+TGG | - | chr8.1:14536343-14536362 | None:intergenic | 30.0% |
!!! | TTTTATTTGTTTCTAGGGCA+TGG | + | chr8.1:14535132-14535151 | MS.gene044533:intron | 30.0% |
AAACTCCCCAATAAATAGCT+TGG | + | chr8.1:14537359-14537378 | MS.gene044533:intron | 35.0% | |
AAGCATTAGCAGAACAACAA+AGG | + | chr8.1:14537692-14537711 | MS.gene044533:CDS | 35.0% | |
ACATGTCTTAGTTAACTGCA+TGG | + | chr8.1:14534889-14534908 | MS.gene044533:intron | 35.0% | |
AGTTAACTAAGACATGTTGG+CGG | - | chr8.1:14534886-14534905 | None:intergenic | 35.0% | |
CAGAACACCAAGCTATTTAT+TGG | - | chr8.1:14537369-14537388 | None:intergenic | 35.0% | |
CTATCATGTTTCAAGCAACT+AGG | - | chr8.1:14535437-14535456 | None:intergenic | 35.0% | |
GAACACCAAGCTATTTATTG+GGG | - | chr8.1:14537367-14537386 | None:intergenic | 35.0% | |
GAACTCAAATAAATCCCAGA+TGG | - | chr8.1:14537434-14537453 | None:intergenic | 35.0% | |
GCAGGAAAAGTTGAATAACA+GGG | - | chr8.1:14536548-14536567 | None:intergenic | 35.0% | |
TAATTGGAAAATTGGAGCCT+TGG | + | chr8.1:14534595-14534614 | MS.gene044533:intron | 35.0% | |
TATCGCCAAAGATACTACTA+TGG | - | chr8.1:14535801-14535820 | None:intergenic | 35.0% | |
TGCAGGAAAAGTTGAATAAC+AGG | - | chr8.1:14536549-14536568 | None:intergenic | 35.0% | |
TGCAGTTAACTAAGACATGT+TGG | - | chr8.1:14534889-14534908 | None:intergenic | 35.0% | |
TTCTGTAGTTATGAGGAATG+AGG | + | chr8.1:14537384-14537403 | MS.gene044533:intron | 35.0% | |
! | ATAGTTTGTATCGTGTTGCT+TGG | + | chr8.1:14534487-14534506 | MS.gene044533:intron | 35.0% |
! | ATTCAACTTTTCCTGCAAAC+TGG | + | chr8.1:14536552-14536571 | MS.gene044533:intron | 35.0% |
! | ATTTTATGGTCTGGGAAACA+GGG | - | chr8.1:14536440-14536459 | None:intergenic | 35.0% |
! | CACGATCAGTATATCTTTTC+AGG | + | chr8.1:14535622-14535641 | MS.gene044533:intron | 35.0% |
! | CAGCAAGATACTTTAAAAGC+TGG | + | chr8.1:14537634-14537653 | MS.gene044533:intron | 35.0% |
! | GCACACCGTAAAGATTTTAA+TGG | + | chr8.1:14537217-14537236 | MS.gene044533:intron | 35.0% |
! | TTGATTTTCACATTTTCCCC+AGG | + | chr8.1:14536786-14536805 | MS.gene044533:intron | 35.0% |
!! | TATCGTGTTGCTTGGAAAAT+TGG | + | chr8.1:14534495-14534514 | MS.gene044533:intron | 35.0% |
!! | TGATTTTCCTCAAGTTTTGG+TGG | + | chr8.1:14535095-14535114 | MS.gene044533:intron | 35.0% |
!!! | GGTTTCAATTTTGACTACGA+AGG | - | chr8.1:14536280-14536299 | None:intergenic | 35.0% |
!!! | TGTTTTTAGATCGATTACGC+CGG | + | chr8.1:14535775-14535794 | MS.gene044533:intron | 35.0% |
AAAGCTGGTAAATGGAGCAA+TGG | + | chr8.1:14537649-14537668 | MS.gene044533:CDS | 40.0% | |
ACAACAAAGGATGTTTGCAG+AGG | + | chr8.1:14537705-14537724 | MS.gene044533:CDS | 40.0% | |
ACCGTAACTGATGTGAAAGA+AGG | + | chr8.1:14536246-14536265 | MS.gene044533:intron | 40.0% | |
AGCACTCGATCAATAGATCT+TGG | - | chr8.1:14535257-14535276 | None:intergenic | 40.0% | |
ATAACAGTGCCCAAGATGTA+TGG | - | chr8.1:14536150-14536169 | None:intergenic | 40.0% | |
CAAATGGGACCATACATCTT+GGG | + | chr8.1:14536138-14536157 | MS.gene044533:intron | 40.0% | |
CAATGAAGTATGTAGCAGAG+AGG | + | chr8.1:14535992-14536011 | MS.gene044533:CDS | 40.0% | |
CTATACGACACCAATTCCTA+AGG | - | chr8.1:14537193-14537212 | None:intergenic | 40.0% | |
CTCTCTGCTACATACTTCAT+TGG | - | chr8.1:14535994-14536013 | None:intergenic | 40.0% | |
GAACTCTCATTGACATTGTG+TGG | + | chr8.1:14537479-14537498 | MS.gene044533:intron | 40.0% | |
GAATCATCAATAAGCTCTGC+AGG | - | chr8.1:14537111-14537130 | None:intergenic | 40.0% | |
GATGGATAGCTTAAGTCGTT+AGG | - | chr8.1:14534769-14534788 | None:intergenic | 40.0% | |
GATTTGCCAACGATATCCAT+GGG | - | chr8.1:14534389-14534408 | None:intergenic | 40.0% | |
GCACTCGATCAATAGATCTT+GGG | - | chr8.1:14535256-14535275 | None:intergenic | 40.0% | |
GCCTTCTTTCACATCAGTTA+CGG | - | chr8.1:14536250-14536269 | None:intergenic | 40.0% | |
GGGAATTAAAATGGTTGCTG+TGG | + | chr8.1:14535553-14535572 | MS.gene044533:intron | 40.0% | |
GTGGCTATTGAGAGACAATA+GGG | + | chr8.1:14537498-14537517 | MS.gene044533:intron | 40.0% | |
TATGTAGCAGAGAGGACAAA+AGG | + | chr8.1:14536000-14536019 | MS.gene044533:CDS | 40.0% | |
TCAAATGGGACCATACATCT+TGG | + | chr8.1:14536137-14536156 | MS.gene044533:intron | 40.0% | |
TGCACAAAGATAACCCATCT+GGG | + | chr8.1:14537417-14537436 | MS.gene044533:intron | 40.0% | |
TGTGGCTATTGAGAGACAAT+AGG | + | chr8.1:14537497-14537516 | MS.gene044533:intron | 40.0% | |
TTGCACAAAGATAACCCATC+TGG | + | chr8.1:14537416-14537435 | MS.gene044533:intron | 40.0% | |
! | AGTGCACACATTTTATGGTC+TGG | - | chr8.1:14536449-14536468 | None:intergenic | 40.0% |
! | ATCTTGGGCACTGTTATGTT+TGG | + | chr8.1:14536153-14536172 | MS.gene044533:intron | 40.0% |
! | ATTTGAGTTCACGAGTGTTC+TGG | + | chr8.1:14537444-14537463 | MS.gene044533:intron | 40.0% |
! | CATTTTATGGTCTGGGAAAC+AGG | - | chr8.1:14536441-14536460 | None:intergenic | 40.0% |
! | GTGCACACATTTTATGGTCT+GGG | - | chr8.1:14536448-14536467 | None:intergenic | 40.0% |
! | TCGTGAGTGCACACATTTTA+TGG | - | chr8.1:14536454-14536473 | None:intergenic | 40.0% |
!! | CTTGGTGTTCTGTAGTTATG+AGG | + | chr8.1:14537377-14537396 | MS.gene044533:intron | 40.0% |
AGCATACGAACAACACAAGC+TGG | + | chr8.1:14536846-14536865 | MS.gene044533:CDS | 45.0% | |
ATGATAAACAGACCGCGTTG+AGG | + | chr8.1:14537081-14537100 | MS.gene044533:intron | 45.0% | |
ATGGATCCCATGGATATCGT+TGG | + | chr8.1:14534380-14534399 | MS.gene044533:CDS | 45.0% | |
ATTGCTCCAAAACAGCCAGA+TGG | + | chr8.1:14537754-14537773 | MS.gene044533:CDS | 45.0% | |
CAGTTGTCGAAAGGAACCAA+TGG | + | chr8.1:14535017-14535036 | MS.gene044533:intron | 45.0% | |
CGATTTGCCAACGATATCCA+TGG | - | chr8.1:14534390-14534409 | None:intergenic | 45.0% | |
CGGCGTTGTTAAATTGGATG+AGG | + | chr8.1:14534532-14534551 | MS.gene044533:intron | 45.0% | |
CGTTGTCGGCGTTGTTAAAT+TGG | + | chr8.1:14534526-14534545 | MS.gene044533:intron | 45.0% | |
GCCAAAGATACTACTATGGC+CGG | - | chr8.1:14535797-14535816 | None:intergenic | 45.0% | |
GGATATCGTTGGCAAATCGA+AGG | + | chr8.1:14534391-14534410 | MS.gene044533:CDS | 45.0% | |
TGATAAACAGACCGCGTTGA+GGG | + | chr8.1:14537082-14537101 | MS.gene044533:intron | 45.0% | |
TGCTGTGGCCTAGTGATATT+TGG | + | chr8.1:14535568-14535587 | MS.gene044533:intron | 45.0% | |
! | AGACATGTTGGCGGATGTTT+AGG | - | chr8.1:14534877-14534896 | None:intergenic | 45.0% |
! | CTATTGATCGAGTGCTGTGT+AGG | + | chr8.1:14535261-14535280 | MS.gene044533:CDS | 45.0% |
!!! | ATCTGGCTGTTTTGGAGCAA+TGG | - | chr8.1:14537755-14537774 | None:intergenic | 45.0% |
!!! | GGGAAAAGTGACGGATTTTG+AGG | - | chr8.1:14537147-14537166 | None:intergenic | 45.0% |
ACAACACAAGCTGGAGACCA+TGG | + | chr8.1:14536855-14536874 | MS.gene044533:CDS | 50.0% | |
AGAGCCTTCAATACGTGCTC+AGG | - | chr8.1:14536035-14536054 | None:intergenic | 50.0% | |
CAAAGTTCTGCACAGCCATC+TGG | + | chr8.1:14536081-14536100 | MS.gene044533:intron | 50.0% | |
CAATGGAGCTGAGATGACTG+AGG | + | chr8.1:14537666-14537685 | MS.gene044533:CDS | 50.0% | |
CAGATGGCTGTGCAGAACTT+TGG | - | chr8.1:14536083-14536102 | None:intergenic | 50.0% | |
CAGGACGAGGTAATATCTCG+TGG | - | chr8.1:14536478-14536497 | None:intergenic | 50.0% | |
CTAAGGTCTCCACGTCGTTT+GGG | - | chr8.1:14537176-14537195 | None:intergenic | 50.0% | |
GAAGATGCTTCGCTTCCCAA+AGG | + | chr8.1:14534413-14534432 | MS.gene044533:CDS | 50.0% | |
GACGTGGAGACCTTAGGAAT+TGG | + | chr8.1:14537180-14537199 | MS.gene044533:intron | 50.0% | |
GATAAACAGACCGCGTTGAG+GGG | + | chr8.1:14537083-14537102 | MS.gene044533:intron | 50.0% | |
GCACGTATTGAAGGCTCTAC+AGG | + | chr8.1:14536037-14536056 | MS.gene044533:CDS | 50.0% | |
GCCGGCCATAGTAGTATCTT+TGG | + | chr8.1:14535793-14535812 | MS.gene044533:intron | 50.0% | |
GGCACTGTTATGTTTGGCCA+AGG | + | chr8.1:14536159-14536178 | MS.gene044533:intron | 50.0% | |
TCCTGAAGCACAATAGCAGC+TGG | + | chr8.1:14536493-14536512 | MS.gene044533:intron | 50.0% | |
TGCTATTGTGCTTCAGGACG+AGG | - | chr8.1:14536491-14536510 | None:intergenic | 50.0% | |
TTCAGAATCTTAGGGCAGCC+TGG | - | chr8.1:14534625-14534644 | None:intergenic | 50.0% | |
TTTCCCCAGGTGCTTGGATT+TGG | + | chr8.1:14536799-14536818 | MS.gene044533:intron | 50.0% | |
! | CGAGAGAGAAGCGTACCTTT+GGG | - | chr8.1:14534431-14534450 | None:intergenic | 50.0% |
! | TCACATTTTCCCCAGGTGCT+TGG | + | chr8.1:14536793-14536812 | MS.gene044533:intron | 50.0% |
! | TCGAGAGAGAAGCGTACCTT+TGG | - | chr8.1:14534432-14534451 | None:intergenic | 50.0% |
! | TGGTCACCATCTGGCTGTTT+TGG | - | chr8.1:14537763-14537782 | None:intergenic | 50.0% |
!! | CTTGGTGCCACCAAAACTTG+AGG | - | chr8.1:14535105-14535124 | None:intergenic | 50.0% |
!! | TTAATGGGGTGTTTTCGGCG+TGG | + | chr8.1:14537233-14537252 | MS.gene044533:intron | 50.0% |
ACTCGCCAAATCCAAGCACC+TGG | - | chr8.1:14536807-14536826 | None:intergenic | 55.0% | |
CCAAACGACGTGGAGACCTT+AGG | + | chr8.1:14537174-14537193 | MS.gene044533:intron | 55.0% | |
CCTAAGGTCTCCACGTCGTT+TGG | - | chr8.1:14537177-14537196 | None:intergenic | 55.0% | |
CTCGCCAAATCCAAGCACCT+GGG | - | chr8.1:14536806-14536825 | None:intergenic | 55.0% | |
GCCAGCTGCTATTGTGCTTC+AGG | - | chr8.1:14536497-14536516 | None:intergenic | 55.0% | |
GGGTTAGGCGGGAAAAGTGA+CGG | - | chr8.1:14537156-14537175 | None:intergenic | 55.0% | |
TCGCCAAATCCAAGCACCTG+GGG | - | chr8.1:14536805-14536824 | None:intergenic | 55.0% | |
TGCGCCTGAGCACGTATTGA+AGG | + | chr8.1:14536028-14536047 | MS.gene044533:CDS | 55.0% | |
! | AATTGGAGCCTTGGTGCACC+AGG | + | chr8.1:14534604-14534623 | MS.gene044533:intron | 55.0% |
! | GTCTCCACGTCGTTTGGGTT+AGG | - | chr8.1:14537171-14537190 | None:intergenic | 55.0% |
! | TCCACGTCGTTTGGGTTAGG+CGG | - | chr8.1:14537168-14537187 | None:intergenic | 55.0% |
CCCACCATTCATCCTAGCGC+GGG | - | chr8.1:14537731-14537750 | None:intergenic | 60.0% | |
CCCCACCATTCATCCTAGCG+CGG | - | chr8.1:14537732-14537751 | None:intergenic | 60.0% | |
CCCGCGCTAGGATGAATGGT+GGG | + | chr8.1:14537728-14537747 | MS.gene044533:CDS | 60.0% | |
CCGCGCTAGGATGAATGGTG+GGG | + | chr8.1:14537729-14537748 | MS.gene044533:CDS | 60.0% | |
GTTACCGCAAGATGTCCGCG+TGG | + | chr8.1:14535221-14535240 | MS.gene044533:CDS | 60.0% | |
! | CCACGTCGTTTGGGTTAGGC+GGG | - | chr8.1:14537167-14537186 | None:intergenic | 60.0% |
CCCGCCTAACCCAAACGACG+TGG | + | chr8.1:14537164-14537183 | MS.gene044533:intron | 65.0% | |
CTCGCCACGCGGACATCTTG+CGG | - | chr8.1:14535228-14535247 | None:intergenic | 65.0% | |
CTTGGGTGTCTCTCGCCACG+CGG | - | chr8.1:14535239-14535258 | None:intergenic | 65.0% | |
GAGGCCCGCGCTAGGATGAA+TGG | + | chr8.1:14537724-14537743 | MS.gene044533:CDS | 65.0% | |
GCCCGCGCTAGGATGAATGG+TGG | + | chr8.1:14537727-14537746 | MS.gene044533:CDS | 65.0% | |
TAGGGCAGCCTGGTGCACCA+AGG | - | chr8.1:14534615-14534634 | None:intergenic | 65.0% | |
TCTGCAGGAGCCCCTCAACG+CGG | - | chr8.1:14537096-14537115 | None:intergenic | 65.0% | |
TGTTTGCAGAGGCCCGCGCT+AGG | + | chr8.1:14537716-14537735 | MS.gene044533:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 14534380 | 14537789 | 14534380 | ID=MS.gene044533 |
chr8.1 | mRNA | 14534380 | 14537789 | 14534380 | ID=MS.gene044533.t1;Parent=MS.gene044533 |
chr8.1 | exon | 14534380 | 14534434 | 14534380 | ID=MS.gene044533.t1.exon1;Parent=MS.gene044533.t1 |
chr8.1 | CDS | 14534380 | 14534434 | 14534380 | ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1 |
chr8.1 | exon | 14535193 | 14535282 | 14535193 | ID=MS.gene044533.t1.exon2;Parent=MS.gene044533.t1 |
chr8.1 | CDS | 14535193 | 14535282 | 14535193 | ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1 |
chr8.1 | exon | 14535964 | 14536058 | 14535964 | ID=MS.gene044533.t1.exon3;Parent=MS.gene044533.t1 |
chr8.1 | CDS | 14535964 | 14536058 | 14535964 | ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1 |
chr8.1 | exon | 14536808 | 14536876 | 14536808 | ID=MS.gene044533.t1.exon4;Parent=MS.gene044533.t1 |
chr8.1 | CDS | 14536808 | 14536876 | 14536808 | ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1 |
chr8.1 | exon | 14537637 | 14537789 | 14537637 | ID=MS.gene044533.t1.exon5;Parent=MS.gene044533.t1 |
chr8.1 | CDS | 14537637 | 14537789 | 14537637 | ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1 |
Gene Sequence |
Protein sequence |