AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene044533


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044533.t1 MTR_4g112380 100.000 153 0 0 1 153 1 153 7.71e-114 319
MS.gene044533.t1 MTR_2g056000 85.621 153 22 0 1 153 31 183 3.26e-97 278
MS.gene044533.t1 MTR_1g072790 41.176 85 48 1 12 94 30 114 2.05e-17 75.1
MS.gene044533.t1 MTR_0392s0020 31.250 112 71 1 5 110 12 123 4.49e-16 70.5
MS.gene044533.t1 MTR_7g100650 37.500 80 50 0 12 91 27 106 6.74e-16 70.9
MS.gene044533.t1 MTR_3g058980 37.179 78 49 0 12 89 28 105 7.87e-16 71.2
MS.gene044533.t1 MTR_7g061270 38.462 78 48 0 12 89 27 104 8.54e-16 70.5
MS.gene044533.t1 MTR_5g095740 36.250 80 51 0 12 91 24 103 1.28e-15 70.5
MS.gene044533.t1 MTR_4g133952 37.975 79 49 0 11 89 58 136 1.45e-15 71.2
MS.gene044533.t1 MTR_4g119500 30.682 88 61 0 12 99 23 110 4.88e-15 67.8
MS.gene044533.t1 MTR_1g039040 28.723 94 67 0 6 99 1 94 5.16e-15 68.9
MS.gene044533.t1 MTR_2g026710 32.530 83 56 0 7 89 13 95 3.17e-14 66.6
MS.gene044533.t1 MTR_1g083070 31.646 79 54 0 13 91 6 84 4.42e-14 65.1
MS.gene044533.t1 MTR_8g093920 29.545 88 62 0 12 99 41 128 7.68e-14 66.2
MS.gene044533.t1 MTR_8g091720 32.143 84 57 0 5 88 22 105 1.17e-13 65.9
MS.gene044533.t1 MTR_1g088860 32.051 78 53 0 12 89 37 114 2.99e-13 64.3
MS.gene044533.t1 MTR_4g133938 35.135 74 48 0 16 89 24 97 5.94e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene044533.t1 AT5G23090 83.766 154 23 1 1 152 1 154 1.34e-93 268
MS.gene044533.t1 AT5G23090 83.766 154 23 1 1 152 1 154 1.34e-93 268
MS.gene044533.t1 AT5G23090 83.766 154 23 1 1 152 1 154 1.34e-93 268
MS.gene044533.t1 AT5G23090 83.117 154 23 2 1 152 1 153 5.02e-91 261
MS.gene044533.t1 AT5G08190 88.652 141 16 0 1 141 1 141 4.62e-84 244
MS.gene044533.t1 AT5G08190 87.943 141 16 1 1 141 1 140 1.94e-81 237
MS.gene044533.t1 AT5G23090 75.974 154 22 2 1 152 1 141 5.10e-81 236
MS.gene044533.t1 AT2G38880 31.068 103 71 0 12 114 22 124 4.40e-17 73.2
MS.gene044533.t1 AT2G38880 32.381 105 69 1 12 114 22 126 1.56e-16 72.0
MS.gene044533.t1 AT2G38880 32.381 105 69 1 12 114 22 126 1.68e-16 72.0
MS.gene044533.t1 AT2G38880 32.381 105 69 1 12 114 22 126 1.68e-16 72.0
MS.gene044533.t1 AT2G38880 32.381 105 69 1 12 114 22 126 1.68e-16 72.0
MS.gene044533.t1 AT2G38880 34.409 93 59 1 12 102 22 114 2.05e-16 72.0
MS.gene044533.t1 AT2G38880 34.409 93 59 1 12 102 22 114 2.05e-16 72.0
MS.gene044533.t1 AT4G14540 31.000 100 69 0 12 111 22 121 2.54e-16 72.0
MS.gene044533.t1 AT3G53340 35.000 100 64 1 12 111 30 128 4.80e-16 71.6
MS.gene044533.t1 AT3G53340 35.000 100 64 1 12 111 30 128 4.80e-16 71.6
MS.gene044533.t1 AT2G37060 36.250 80 51 0 12 91 31 110 7.51e-16 70.9
MS.gene044533.t1 AT2G37060 36.250 80 51 0 12 91 31 110 7.51e-16 70.9
MS.gene044533.t1 AT2G37060 36.250 80 51 0 12 91 31 110 7.51e-16 70.9
MS.gene044533.t1 AT2G38880 35.294 85 53 1 12 94 22 106 8.84e-16 69.3
MS.gene044533.t1 AT5G47640 30.631 111 76 1 12 122 28 137 9.96e-16 70.9
MS.gene044533.t1 AT5G47670 37.975 79 49 0 11 89 29 107 1.53e-15 70.9
MS.gene044533.t1 AT5G47670 37.037 81 51 0 11 91 58 138 2.15e-15 70.9
MS.gene044533.t1 AT5G47670 37.037 81 51 0 11 91 58 138 2.15e-15 70.9
MS.gene044533.t1 AT3G53340 37.179 78 49 0 12 89 30 107 7.52e-15 67.0
MS.gene044533.t1 AT2G38880 31.250 96 66 0 12 107 22 117 1.88e-14 66.6
MS.gene044533.t1 AT2G38880 31.250 96 66 0 12 107 22 117 1.88e-14 66.6
MS.gene044533.t1 AT2G38880 31.250 96 66 0 12 107 22 117 1.88e-14 66.6
MS.gene044533.t1 AT3G53340 32.955 88 59 0 12 99 30 117 2.46e-14 66.6
MS.gene044533.t1 AT3G53340 32.955 88 59 0 12 99 30 117 2.46e-14 66.6
MS.gene044533.t1 AT1G21970 32.099 81 55 0 11 91 59 139 4.51e-14 67.4
MS.gene044533.t1 AT1G09030 31.250 80 55 0 12 91 4 83 1.69e-13 63.9
MS.gene044533.t1 AT2G13570 32.468 77 52 0 12 88 37 113 5.51e-13 64.3
MS.gene044533.t1 AT2G47810 30.263 76 53 0 12 87 52 127 9.59e-12 59.7

Find 38 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTAGCTAATCTAATTT+TGG 0.141370 8.1:-14537780 None:intergenic
TGGTCACCATCTGGCTGTTT+TGG 0.240495 8.1:-14537760 None:intergenic
ATACTTTAAAAGCTGGTAAA+TGG 0.274950 8.1:+14537641 MS.gene044533:CDS
TTTCCCCAGGTGCTTGGATT+TGG 0.324476 8.1:+14536799 MS.gene044533:intron
CAGCAAGATACTTTAAAAGC+TGG 0.415421 8.1:+14537634 MS.gene044533:intron
TGCGCCTGAGCACGTATTGA+AGG 0.421286 8.1:+14536028 MS.gene044533:CDS
AGCACTCGATCAATAGATCT+TGG 0.421579 8.1:-14535254 None:intergenic
CTCTCTGCTACATACTTCAT+TGG 0.429101 8.1:-14535991 None:intergenic
TATGTAGCAGAGAGGACAAA+AGG 0.468267 8.1:+14536000 MS.gene044533:CDS
GCACGTATTGAAGGCTCTAC+AGG 0.479345 8.1:+14536037 MS.gene044533:CDS
CGATTTGCCAACGATATCCA+TGG 0.490386 8.1:-14534387 None:intergenic
GAGGCCCGCGCTAGGATGAA+TGG 0.491671 8.1:+14537724 MS.gene044533:CDS
CCCGCGCTAGGATGAATGGT+GGG 0.499784 8.1:+14537728 MS.gene044533:CDS
CTCGCCACGCGGACATCTTG+CGG 0.511342 8.1:-14535225 None:intergenic
GCACTCGATCAATAGATCTT+GGG 0.526789 8.1:-14535253 None:intergenic
AGGTTAAATTATGGATCCCA+TGG 0.527047 8.1:+14534370 None:intergenic
CCCACCATTCATCCTAGCGC+GGG 0.529331 8.1:-14537728 None:intergenic
AGAGCCTTCAATACGTGCTC+AGG 0.530619 8.1:-14536032 None:intergenic
TGTTTGCAGAGGCCCGCGCT+AGG 0.547845 8.1:+14537716 MS.gene044533:CDS
CTATTGATCGAGTGCTGTGT+AGG 0.564923 8.1:+14535261 MS.gene044533:CDS
CCCCACCATTCATCCTAGCG+CGG 0.565574 8.1:-14537729 None:intergenic
AAAGCTGGTAAATGGAGCAA+TGG 0.581041 8.1:+14537649 MS.gene044533:CDS
AGCATACGAACAACACAAGC+TGG 0.587192 8.1:+14536846 MS.gene044533:CDS
GTTTATAAATCTCATCTCAT+CGG 0.592523 8.1:+14535965 MS.gene044533:CDS
ATGGATCCCATGGATATCGT+TGG 0.592534 8.1:+14534380 MS.gene044533:CDS
GGATATCGTTGGCAAATCGA+AGG 0.607995 8.1:+14534391 MS.gene044533:CDS
GATTTGCCAACGATATCCAT+GGG 0.608748 8.1:-14534386 None:intergenic
AAGCATTAGCAGAACAACAA+AGG 0.632993 8.1:+14537692 MS.gene044533:CDS
GCCCGCGCTAGGATGAATGG+TGG 0.635837 8.1:+14537727 MS.gene044533:CDS
ACAACACAAGCTGGAGACCA+TGG 0.639569 8.1:+14536855 MS.gene044533:CDS
GAAGATGCTTCGCTTCCCAA+AGG 0.654221 8.1:+14534413 MS.gene044533:CDS
ATTGCTCCAAAACAGCCAGA+TGG 0.666319 8.1:+14537754 MS.gene044533:CDS
CCGCGCTAGGATGAATGGTG+GGG 0.672298 8.1:+14537729 MS.gene044533:CDS
ACAACAAAGGATGTTTGCAG+AGG 0.686768 8.1:+14537705 MS.gene044533:CDS
CTTGGGTGTCTCTCGCCACG+CGG 0.690389 8.1:-14535236 None:intergenic
CAATGAAGTATGTAGCAGAG+AGG 0.698906 8.1:+14535992 MS.gene044533:CDS
CAATGGAGCTGAGATGACTG+AGG 0.705174 8.1:+14537666 MS.gene044533:CDS
GTTACCGCAAGATGTCCGCG+TGG 0.763213 8.1:+14535221 MS.gene044533:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAATGATAATTAATAG+TGG + chr8.1:14535068-14535087 MS.gene044533:intron 10.0%
!!! ATGTTTTTTTATTTTTTTTG+AGG + chr8.1:14535531-14535550 MS.gene044533:intron 10.0%
!!! ATTACTAATATTTGTTTTAT+CGG + chr8.1:14534451-14534470 MS.gene044533:intron 10.0%
!!! ATTTATTTCAATTCTAAAAT+CGG + chr8.1:14536673-14536692 MS.gene044533:intron 10.0%
!!! TGTTTTTTTATTTTTTTTGA+GGG + chr8.1:14535532-14535551 MS.gene044533:intron 10.0%
!! AACAATGACAAAAATAATTA+AGG + chr8.1:14535194-14535213 MS.gene044533:CDS 15.0%
!! AATAGATCTTTAATCAATAA+AGG - chr8.1:14536394-14536413 None:intergenic 15.0%
!! ATTAAATTTGACTATTCAAA+TGG + chr8.1:14536122-14536141 MS.gene044533:intron 15.0%
!! CTAAGATTATCAAAAATAAA+TGG - chr8.1:14535896-14535915 None:intergenic 15.0%
!! CTTAACTAAAAAAAAACTAT+GGG - chr8.1:14536519-14536538 None:intergenic 15.0%
!! GCAAATTTATATAATCTTAT+GGG - chr8.1:14535750-14535769 None:intergenic 15.0%
!! TTAAATTTGACTATTCAAAT+GGG + chr8.1:14536123-14536142 MS.gene044533:intron 15.0%
!! TTTAAAAACACAAACTAAAA+TGG - chr8.1:14537052-14537071 None:intergenic 15.0%
!!! AACATTTTAATTATAATCCA+TGG - chr8.1:14535489-14535508 None:intergenic 15.0%
!!! GAGTTTATTATTTTATTTCA+GGG + chr8.1:14535339-14535358 MS.gene044533:intron 15.0%
!!! GTTTTTTTATTTTTTTTGAG+GGG + chr8.1:14535533-14535552 MS.gene044533:intron 15.0%
!!! TAAATTTGTTTTGAATGAAA+TGG - chr8.1:14536658-14536677 None:intergenic 15.0%
!!! TGAGTTTATTATTTTATTTC+AGG + chr8.1:14535338-14535357 MS.gene044533:intron 15.0%
!!! TTTAGTTTGTGTTTTTAAAT+CGG + chr8.1:14537053-14537072 MS.gene044533:intron 15.0%
!!! TTTTACACTATTTTTTGTTT+TGG - chr8.1:14536985-14537004 None:intergenic 15.0%
!! AAAAGTAAAATCATATGCAA+TGG - chr8.1:14537571-14537590 None:intergenic 20.0%
!! AAACAGAAAAACATTAAACT+GGG - chr8.1:14534925-14534944 None:intergenic 20.0%
!! AAAGTGAAATGAAATAAATG+TGG - chr8.1:14536301-14536320 None:intergenic 20.0%
!! AATAATAACCAAATATCACT+AGG - chr8.1:14535579-14535598 None:intergenic 20.0%
!! ACAAATATTATATACTCTGA+TGG - chr8.1:14534787-14534806 None:intergenic 20.0%
!! AGACAGACATAAAATAAAAA+TGG - chr8.1:14535832-14535851 None:intergenic 20.0%
!! ATAACTACTAAGAAATATGT+AGG - chr8.1:14537302-14537321 None:intergenic 20.0%
!! ATTCATAATCAAAATTACCA+TGG - chr8.1:14536875-14536894 None:intergenic 20.0%
!! CCTGTTCAAAAAAAAAAAAA+CGG - chr8.1:14534691-14534710 None:intergenic 20.0%
!! CCTTAACTAAAAAAAAACTA+TGG - chr8.1:14536520-14536539 None:intergenic 20.0%
!! GGCAAATTTATATAATCTTA+TGG - chr8.1:14535751-14535770 None:intergenic 20.0%
!! TACTATATGACTGTATATTA+TGG - chr8.1:14535714-14535733 None:intergenic 20.0%
!! TTAATTTAGATTCAAATCTG+AGG + chr8.1:14535646-14535665 MS.gene044533:intron 20.0%
!! TTAGGATATAATTGGAAAAT+TGG + chr8.1:14534587-14534606 MS.gene044533:intron 20.0%
!! TTTAAATATGCAATGTCTTT+AGG + chr8.1:14534569-14534588 MS.gene044533:intron 20.0%
!!! AAATTTTTTTTAGGCTGTTT+AGG + chr8.1:14535852-14535871 MS.gene044533:intron 20.0%
!!! CAAGTATTCATACATTTTAA+AGG - chr8.1:14536959-14536978 None:intergenic 20.0%
!!! CAATGGACAATTTTTTAAAT+GGG + chr8.1:14535034-14535053 MS.gene044533:intron 20.0%
!!! CCATAGTTTTTTTTTAGTTA+AGG + chr8.1:14536517-14536536 MS.gene044533:intron 20.0%
!!! CTCTATTTTATTTGTTTCTA+GGG + chr8.1:14535127-14535146 MS.gene044533:intron 20.0%
!!! GTATTGAGTAGTTAAATTTT+AGG - chr8.1:14536358-14536377 None:intergenic 20.0%
!!! TGAGTTTCTTCTTTTATTTT+AGG + chr8.1:14535382-14535401 MS.gene044533:intron 20.0%
!!! TGTCTGTCTAAATTTTTTTT+AGG + chr8.1:14535843-14535862 MS.gene044533:intron 20.0%
!!! TTAGTTTGTGTTTTTAAATC+GGG + chr8.1:14537054-14537073 MS.gene044533:intron 20.0%
! AAACTCATATTCAGAATCTT+AGG - chr8.1:14534634-14534653 None:intergenic 25.0%
! AAATTGGATGAGGATATAAT+TGG + chr8.1:14534542-14534561 MS.gene044533:intron 25.0%
! AACTCATATTCAGAATCTTA+GGG - chr8.1:14534633-14534652 None:intergenic 25.0%
! ATACAGTCATATAGTATCTT+TGG + chr8.1:14535718-14535737 MS.gene044533:intron 25.0%
! ATCATATGGTATATTATGGT+TGG - chr8.1:14535681-14535700 None:intergenic 25.0%
! ATGGATCATATGGTATATTA+TGG - chr8.1:14535685-14535704 None:intergenic 25.0%
! CAAACAGAAAAACATTAAAC+TGG - chr8.1:14534926-14534945 None:intergenic 25.0%
! CAGAGATAAATATGTATGTA+AGG - chr8.1:14536612-14536631 None:intergenic 25.0%
! CCATTTAAAAAATTGTCCAT+TGG - chr8.1:14535036-14535055 None:intergenic 25.0%
! CTGTATATTATGGTGATTTA+TGG - chr8.1:14535704-14535723 None:intergenic 25.0%
! GATCTTTAATCAATAAAGGA+TGG - chr8.1:14536390-14536409 None:intergenic 25.0%
! GTTTATAAATCTCATCTCAT+CGG + chr8.1:14535965-14535984 MS.gene044533:CDS 25.0%
! TAATCGATCTAAAAACAAGA+CGG - chr8.1:14535772-14535791 None:intergenic 25.0%
! TATGTAGTGTTTATTGATCT+TGG + chr8.1:14537529-14537548 MS.gene044533:intron 25.0%
! TCAAGTATTCAGCATAAATA+CGG - chr8.1:14536901-14536920 None:intergenic 25.0%
! TCAATAAACGAAATCATATC+AGG - chr8.1:14536770-14536789 None:intergenic 25.0%
! TCATATGGTATATTATGGTT+GGG - chr8.1:14535680-14535699 None:intergenic 25.0%
! TTTATATAACAGTTGTCGAA+AGG + chr8.1:14535008-14535027 MS.gene044533:intron 25.0%
!! ACTCTACACTAACTTTTATT+TGG - chr8.1:14537014-14537033 None:intergenic 25.0%
!! ATACTTTAAAAGCTGGTAAA+TGG + chr8.1:14537641-14537660 MS.gene044533:CDS 25.0%
!! ATATGATTTTCCTCAAGTTT+TGG + chr8.1:14535092-14535111 MS.gene044533:intron 25.0%
!! CAAAGAGTGCAATTTAAAAA+CGG - chr8.1:14534723-14534742 None:intergenic 25.0%
!! GTTACTGAATAAGATTTTGT+TGG + chr8.1:14535925-14535944 MS.gene044533:intron 25.0%
!! TACTACTGTTTTGTGAAAAT+TGG + chr8.1:14534979-14534998 MS.gene044533:intron 25.0%
!! TTAATGTTTTTCTGTTTGCA+AGG + chr8.1:14534928-14534947 MS.gene044533:intron 25.0%
!!! AGTAGTTAAATTTTAGGTGT+TGG - chr8.1:14536352-14536371 None:intergenic 25.0%
!!! CAATGTCTTTAGGATATAAT+TGG + chr8.1:14534579-14534598 MS.gene044533:intron 25.0%
!!! CCAATGGACAATTTTTTAAA+TGG + chr8.1:14535033-14535052 MS.gene044533:intron 25.0%
!!! CCGTTTTTTTTTTTTTGAAC+AGG + chr8.1:14534688-14534707 MS.gene044533:intron 25.0%
!!! CTCTACACTAACTTTTATTT+GGG - chr8.1:14537013-14537032 None:intergenic 25.0%
!!! GCTCTATTTTATTTGTTTCT+AGG + chr8.1:14535126-14535145 MS.gene044533:intron 25.0%
!!! TAGTTTGTGTTTTTAAATCG+GGG + chr8.1:14537055-14537074 MS.gene044533:intron 25.0%
!!! TTTTTTGAGGGGAATTAAAA+TGG + chr8.1:14535544-14535563 MS.gene044533:intron 25.0%
AACTCAAATAAATCCCAGAT+GGG - chr8.1:14537433-14537452 None:intergenic 30.0%
AAGTATTCAGCATAAATACG+GGG - chr8.1:14536899-14536918 None:intergenic 30.0%
AATAACAGATAAGAACCAGA+TGG - chr8.1:14536099-14536118 None:intergenic 30.0%
AATTGGAATCAATTCGTTGT+CGG + chr8.1:14534512-14534531 MS.gene044533:intron 30.0%
ACACCCCATTAAAATCTTTA+CGG - chr8.1:14537225-14537244 None:intergenic 30.0%
AGAACACCAAGCTATTTATT+GGG - chr8.1:14537368-14537387 None:intergenic 30.0%
AGTAAAATCATATGCAATGG+TGG - chr8.1:14537568-14537587 None:intergenic 30.0%
ATGGTGATTTATGGATCATA+TGG - chr8.1:14535695-14535714 None:intergenic 30.0%
ATGTAAACAAGCTATGCTTT+AGG + chr8.1:14536196-14536215 MS.gene044533:intron 30.0%
ATTAATTACAACCAGTTTGC+AGG - chr8.1:14536566-14536585 None:intergenic 30.0%
CAAGTATTCAGCATAAATAC+GGG - chr8.1:14536900-14536919 None:intergenic 30.0%
CATTGTATCATTAAGAACCT+TGG - chr8.1:14536179-14536198 None:intergenic 30.0%
GATAAATATGTATGTAAGGC+AGG - chr8.1:14536608-14536627 None:intergenic 30.0%
TGTTTAGGCTTACTAGATTA+CGG + chr8.1:14535867-14535886 MS.gene044533:intron 30.0%
! AACAAATAAAATAGAGCGCT+TGG - chr8.1:14535123-14535142 None:intergenic 30.0%
! ACGATCAGTATATCTTTTCA+GGG + chr8.1:14535623-14535642 MS.gene044533:intron 30.0%
! TAGATGTTTTACTTAGCTTC+AGG + chr8.1:14534818-14534837 MS.gene044533:intron 30.0%
!! ACACCGTAAAGATTTTAATG+GGG + chr8.1:14537219-14537238 MS.gene044533:intron 30.0%
!! AGATTTTAATGGGGTGTTTT+CGG + chr8.1:14537228-14537247 MS.gene044533:intron 30.0%
!! CACACCGTAAAGATTTTAAT+GGG + chr8.1:14537218-14537237 MS.gene044533:intron 30.0%
!! TTAATTTTAACAGACAGCAG+AGG - chr8.1:14537274-14537293 None:intergenic 30.0%
!!! ATGTCGACAAATTTTTTCCA+TGG + chr8.1:14535469-14535488 MS.gene044533:intron 30.0%
!!! ATTTTAGGTGTTGGAATGTT+TGG - chr8.1:14536343-14536362 None:intergenic 30.0%
!!! TTTTATTTGTTTCTAGGGCA+TGG + chr8.1:14535132-14535151 MS.gene044533:intron 30.0%
AAACTCCCCAATAAATAGCT+TGG + chr8.1:14537359-14537378 MS.gene044533:intron 35.0%
AAGCATTAGCAGAACAACAA+AGG + chr8.1:14537692-14537711 MS.gene044533:CDS 35.0%
ACATGTCTTAGTTAACTGCA+TGG + chr8.1:14534889-14534908 MS.gene044533:intron 35.0%
AGTTAACTAAGACATGTTGG+CGG - chr8.1:14534886-14534905 None:intergenic 35.0%
CAGAACACCAAGCTATTTAT+TGG - chr8.1:14537369-14537388 None:intergenic 35.0%
CTATCATGTTTCAAGCAACT+AGG - chr8.1:14535437-14535456 None:intergenic 35.0%
GAACACCAAGCTATTTATTG+GGG - chr8.1:14537367-14537386 None:intergenic 35.0%
GAACTCAAATAAATCCCAGA+TGG - chr8.1:14537434-14537453 None:intergenic 35.0%
GCAGGAAAAGTTGAATAACA+GGG - chr8.1:14536548-14536567 None:intergenic 35.0%
TAATTGGAAAATTGGAGCCT+TGG + chr8.1:14534595-14534614 MS.gene044533:intron 35.0%
TATCGCCAAAGATACTACTA+TGG - chr8.1:14535801-14535820 None:intergenic 35.0%
TGCAGGAAAAGTTGAATAAC+AGG - chr8.1:14536549-14536568 None:intergenic 35.0%
TGCAGTTAACTAAGACATGT+TGG - chr8.1:14534889-14534908 None:intergenic 35.0%
TTCTGTAGTTATGAGGAATG+AGG + chr8.1:14537384-14537403 MS.gene044533:intron 35.0%
! ATAGTTTGTATCGTGTTGCT+TGG + chr8.1:14534487-14534506 MS.gene044533:intron 35.0%
! ATTCAACTTTTCCTGCAAAC+TGG + chr8.1:14536552-14536571 MS.gene044533:intron 35.0%
! ATTTTATGGTCTGGGAAACA+GGG - chr8.1:14536440-14536459 None:intergenic 35.0%
! CACGATCAGTATATCTTTTC+AGG + chr8.1:14535622-14535641 MS.gene044533:intron 35.0%
! CAGCAAGATACTTTAAAAGC+TGG + chr8.1:14537634-14537653 MS.gene044533:intron 35.0%
! GCACACCGTAAAGATTTTAA+TGG + chr8.1:14537217-14537236 MS.gene044533:intron 35.0%
! TTGATTTTCACATTTTCCCC+AGG + chr8.1:14536786-14536805 MS.gene044533:intron 35.0%
!! TATCGTGTTGCTTGGAAAAT+TGG + chr8.1:14534495-14534514 MS.gene044533:intron 35.0%
!! TGATTTTCCTCAAGTTTTGG+TGG + chr8.1:14535095-14535114 MS.gene044533:intron 35.0%
!!! GGTTTCAATTTTGACTACGA+AGG - chr8.1:14536280-14536299 None:intergenic 35.0%
!!! TGTTTTTAGATCGATTACGC+CGG + chr8.1:14535775-14535794 MS.gene044533:intron 35.0%
AAAGCTGGTAAATGGAGCAA+TGG + chr8.1:14537649-14537668 MS.gene044533:CDS 40.0%
ACAACAAAGGATGTTTGCAG+AGG + chr8.1:14537705-14537724 MS.gene044533:CDS 40.0%
ACCGTAACTGATGTGAAAGA+AGG + chr8.1:14536246-14536265 MS.gene044533:intron 40.0%
AGCACTCGATCAATAGATCT+TGG - chr8.1:14535257-14535276 None:intergenic 40.0%
ATAACAGTGCCCAAGATGTA+TGG - chr8.1:14536150-14536169 None:intergenic 40.0%
CAAATGGGACCATACATCTT+GGG + chr8.1:14536138-14536157 MS.gene044533:intron 40.0%
CAATGAAGTATGTAGCAGAG+AGG + chr8.1:14535992-14536011 MS.gene044533:CDS 40.0%
CTATACGACACCAATTCCTA+AGG - chr8.1:14537193-14537212 None:intergenic 40.0%
CTCTCTGCTACATACTTCAT+TGG - chr8.1:14535994-14536013 None:intergenic 40.0%
GAACTCTCATTGACATTGTG+TGG + chr8.1:14537479-14537498 MS.gene044533:intron 40.0%
GAATCATCAATAAGCTCTGC+AGG - chr8.1:14537111-14537130 None:intergenic 40.0%
GATGGATAGCTTAAGTCGTT+AGG - chr8.1:14534769-14534788 None:intergenic 40.0%
GATTTGCCAACGATATCCAT+GGG - chr8.1:14534389-14534408 None:intergenic 40.0%
GCACTCGATCAATAGATCTT+GGG - chr8.1:14535256-14535275 None:intergenic 40.0%
GCCTTCTTTCACATCAGTTA+CGG - chr8.1:14536250-14536269 None:intergenic 40.0%
GGGAATTAAAATGGTTGCTG+TGG + chr8.1:14535553-14535572 MS.gene044533:intron 40.0%
GTGGCTATTGAGAGACAATA+GGG + chr8.1:14537498-14537517 MS.gene044533:intron 40.0%
TATGTAGCAGAGAGGACAAA+AGG + chr8.1:14536000-14536019 MS.gene044533:CDS 40.0%
TCAAATGGGACCATACATCT+TGG + chr8.1:14536137-14536156 MS.gene044533:intron 40.0%
TGCACAAAGATAACCCATCT+GGG + chr8.1:14537417-14537436 MS.gene044533:intron 40.0%
TGTGGCTATTGAGAGACAAT+AGG + chr8.1:14537497-14537516 MS.gene044533:intron 40.0%
TTGCACAAAGATAACCCATC+TGG + chr8.1:14537416-14537435 MS.gene044533:intron 40.0%
! AGTGCACACATTTTATGGTC+TGG - chr8.1:14536449-14536468 None:intergenic 40.0%
! ATCTTGGGCACTGTTATGTT+TGG + chr8.1:14536153-14536172 MS.gene044533:intron 40.0%
! ATTTGAGTTCACGAGTGTTC+TGG + chr8.1:14537444-14537463 MS.gene044533:intron 40.0%
! CATTTTATGGTCTGGGAAAC+AGG - chr8.1:14536441-14536460 None:intergenic 40.0%
! GTGCACACATTTTATGGTCT+GGG - chr8.1:14536448-14536467 None:intergenic 40.0%
! TCGTGAGTGCACACATTTTA+TGG - chr8.1:14536454-14536473 None:intergenic 40.0%
!! CTTGGTGTTCTGTAGTTATG+AGG + chr8.1:14537377-14537396 MS.gene044533:intron 40.0%
AGCATACGAACAACACAAGC+TGG + chr8.1:14536846-14536865 MS.gene044533:CDS 45.0%
ATGATAAACAGACCGCGTTG+AGG + chr8.1:14537081-14537100 MS.gene044533:intron 45.0%
ATGGATCCCATGGATATCGT+TGG + chr8.1:14534380-14534399 MS.gene044533:CDS 45.0%
ATTGCTCCAAAACAGCCAGA+TGG + chr8.1:14537754-14537773 MS.gene044533:CDS 45.0%
CAGTTGTCGAAAGGAACCAA+TGG + chr8.1:14535017-14535036 MS.gene044533:intron 45.0%
CGATTTGCCAACGATATCCA+TGG - chr8.1:14534390-14534409 None:intergenic 45.0%
CGGCGTTGTTAAATTGGATG+AGG + chr8.1:14534532-14534551 MS.gene044533:intron 45.0%
CGTTGTCGGCGTTGTTAAAT+TGG + chr8.1:14534526-14534545 MS.gene044533:intron 45.0%
GCCAAAGATACTACTATGGC+CGG - chr8.1:14535797-14535816 None:intergenic 45.0%
GGATATCGTTGGCAAATCGA+AGG + chr8.1:14534391-14534410 MS.gene044533:CDS 45.0%
TGATAAACAGACCGCGTTGA+GGG + chr8.1:14537082-14537101 MS.gene044533:intron 45.0%
TGCTGTGGCCTAGTGATATT+TGG + chr8.1:14535568-14535587 MS.gene044533:intron 45.0%
! AGACATGTTGGCGGATGTTT+AGG - chr8.1:14534877-14534896 None:intergenic 45.0%
! CTATTGATCGAGTGCTGTGT+AGG + chr8.1:14535261-14535280 MS.gene044533:CDS 45.0%
!!! ATCTGGCTGTTTTGGAGCAA+TGG - chr8.1:14537755-14537774 None:intergenic 45.0%
!!! GGGAAAAGTGACGGATTTTG+AGG - chr8.1:14537147-14537166 None:intergenic 45.0%
ACAACACAAGCTGGAGACCA+TGG + chr8.1:14536855-14536874 MS.gene044533:CDS 50.0%
AGAGCCTTCAATACGTGCTC+AGG - chr8.1:14536035-14536054 None:intergenic 50.0%
CAAAGTTCTGCACAGCCATC+TGG + chr8.1:14536081-14536100 MS.gene044533:intron 50.0%
CAATGGAGCTGAGATGACTG+AGG + chr8.1:14537666-14537685 MS.gene044533:CDS 50.0%
CAGATGGCTGTGCAGAACTT+TGG - chr8.1:14536083-14536102 None:intergenic 50.0%
CAGGACGAGGTAATATCTCG+TGG - chr8.1:14536478-14536497 None:intergenic 50.0%
CTAAGGTCTCCACGTCGTTT+GGG - chr8.1:14537176-14537195 None:intergenic 50.0%
GAAGATGCTTCGCTTCCCAA+AGG + chr8.1:14534413-14534432 MS.gene044533:CDS 50.0%
GACGTGGAGACCTTAGGAAT+TGG + chr8.1:14537180-14537199 MS.gene044533:intron 50.0%
GATAAACAGACCGCGTTGAG+GGG + chr8.1:14537083-14537102 MS.gene044533:intron 50.0%
GCACGTATTGAAGGCTCTAC+AGG + chr8.1:14536037-14536056 MS.gene044533:CDS 50.0%
GCCGGCCATAGTAGTATCTT+TGG + chr8.1:14535793-14535812 MS.gene044533:intron 50.0%
GGCACTGTTATGTTTGGCCA+AGG + chr8.1:14536159-14536178 MS.gene044533:intron 50.0%
TCCTGAAGCACAATAGCAGC+TGG + chr8.1:14536493-14536512 MS.gene044533:intron 50.0%
TGCTATTGTGCTTCAGGACG+AGG - chr8.1:14536491-14536510 None:intergenic 50.0%
TTCAGAATCTTAGGGCAGCC+TGG - chr8.1:14534625-14534644 None:intergenic 50.0%
TTTCCCCAGGTGCTTGGATT+TGG + chr8.1:14536799-14536818 MS.gene044533:intron 50.0%
! CGAGAGAGAAGCGTACCTTT+GGG - chr8.1:14534431-14534450 None:intergenic 50.0%
! TCACATTTTCCCCAGGTGCT+TGG + chr8.1:14536793-14536812 MS.gene044533:intron 50.0%
! TCGAGAGAGAAGCGTACCTT+TGG - chr8.1:14534432-14534451 None:intergenic 50.0%
! TGGTCACCATCTGGCTGTTT+TGG - chr8.1:14537763-14537782 None:intergenic 50.0%
!! CTTGGTGCCACCAAAACTTG+AGG - chr8.1:14535105-14535124 None:intergenic 50.0%
!! TTAATGGGGTGTTTTCGGCG+TGG + chr8.1:14537233-14537252 MS.gene044533:intron 50.0%
ACTCGCCAAATCCAAGCACC+TGG - chr8.1:14536807-14536826 None:intergenic 55.0%
CCAAACGACGTGGAGACCTT+AGG + chr8.1:14537174-14537193 MS.gene044533:intron 55.0%
CCTAAGGTCTCCACGTCGTT+TGG - chr8.1:14537177-14537196 None:intergenic 55.0%
CTCGCCAAATCCAAGCACCT+GGG - chr8.1:14536806-14536825 None:intergenic 55.0%
GCCAGCTGCTATTGTGCTTC+AGG - chr8.1:14536497-14536516 None:intergenic 55.0%
GGGTTAGGCGGGAAAAGTGA+CGG - chr8.1:14537156-14537175 None:intergenic 55.0%
TCGCCAAATCCAAGCACCTG+GGG - chr8.1:14536805-14536824 None:intergenic 55.0%
TGCGCCTGAGCACGTATTGA+AGG + chr8.1:14536028-14536047 MS.gene044533:CDS 55.0%
! AATTGGAGCCTTGGTGCACC+AGG + chr8.1:14534604-14534623 MS.gene044533:intron 55.0%
! GTCTCCACGTCGTTTGGGTT+AGG - chr8.1:14537171-14537190 None:intergenic 55.0%
! TCCACGTCGTTTGGGTTAGG+CGG - chr8.1:14537168-14537187 None:intergenic 55.0%
CCCACCATTCATCCTAGCGC+GGG - chr8.1:14537731-14537750 None:intergenic 60.0%
CCCCACCATTCATCCTAGCG+CGG - chr8.1:14537732-14537751 None:intergenic 60.0%
CCCGCGCTAGGATGAATGGT+GGG + chr8.1:14537728-14537747 MS.gene044533:CDS 60.0%
CCGCGCTAGGATGAATGGTG+GGG + chr8.1:14537729-14537748 MS.gene044533:CDS 60.0%
GTTACCGCAAGATGTCCGCG+TGG + chr8.1:14535221-14535240 MS.gene044533:CDS 60.0%
! CCACGTCGTTTGGGTTAGGC+GGG - chr8.1:14537167-14537186 None:intergenic 60.0%
CCCGCCTAACCCAAACGACG+TGG + chr8.1:14537164-14537183 MS.gene044533:intron 65.0%
CTCGCCACGCGGACATCTTG+CGG - chr8.1:14535228-14535247 None:intergenic 65.0%
CTTGGGTGTCTCTCGCCACG+CGG - chr8.1:14535239-14535258 None:intergenic 65.0%
GAGGCCCGCGCTAGGATGAA+TGG + chr8.1:14537724-14537743 MS.gene044533:CDS 65.0%
GCCCGCGCTAGGATGAATGG+TGG + chr8.1:14537727-14537746 MS.gene044533:CDS 65.0%
TAGGGCAGCCTGGTGCACCA+AGG - chr8.1:14534615-14534634 None:intergenic 65.0%
TCTGCAGGAGCCCCTCAACG+CGG - chr8.1:14537096-14537115 None:intergenic 65.0%
TGTTTGCAGAGGCCCGCGCT+AGG + chr8.1:14537716-14537735 MS.gene044533:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 14534380 14537789 14534380 ID=MS.gene044533
chr8.1 mRNA 14534380 14537789 14534380 ID=MS.gene044533.t1;Parent=MS.gene044533
chr8.1 exon 14534380 14534434 14534380 ID=MS.gene044533.t1.exon1;Parent=MS.gene044533.t1
chr8.1 CDS 14534380 14534434 14534380 ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1
chr8.1 exon 14535193 14535282 14535193 ID=MS.gene044533.t1.exon2;Parent=MS.gene044533.t1
chr8.1 CDS 14535193 14535282 14535193 ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1
chr8.1 exon 14535964 14536058 14535964 ID=MS.gene044533.t1.exon3;Parent=MS.gene044533.t1
chr8.1 CDS 14535964 14536058 14535964 ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1
chr8.1 exon 14536808 14536876 14536808 ID=MS.gene044533.t1.exon4;Parent=MS.gene044533.t1
chr8.1 CDS 14536808 14536876 14536808 ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1
chr8.1 exon 14537637 14537789 14537637 ID=MS.gene044533.t1.exon5;Parent=MS.gene044533.t1
chr8.1 CDS 14537637 14537789 14537637 ID=cds.MS.gene044533.t1;Parent=MS.gene044533.t1
Gene Sequence

>MS.gene044533

ATGGATCCCATGGATATCGTTGGCAAATCGAAGGAAGATGCTTCGCTTCCCAAAGGTACGCTTCTCTCTCGATTACTAATATTTGTTTTATCGGTGAATTTCATTGAATAGTTTGTATCGTGTTGCTTGGAAAATTGGAATCAATTCGTTGTCGGCGTTGTTAAATTGGATGAGGATATAATTGGAAAATTTAAATATGCAATGTCTTTAGGATATAATTGGAAAATTGGAGCCTTGGTGCACCAGGCTGCCCTAAGATTCTGAATATGAGTTTTTAACAAACACAATGACTATGACTTTTGATAAAACCGTTTTTTTTTTTTTGAACAGGTTGATAAAGCCGTTTTTAAATTGCACTCTTTGTGAAATCATGTGTTTTCAACATACCTAACGACTTAAGCTATCCATCAGAGTATATAATATTTGTAAAATCATAGATAGATGTTTTACTTAGCTTCAGGTCTCTTCAATATTCACTGAAACTCAATTTGTGACCTAAACATCCGCCAACATGTCTTAGTTAACTGCATGGATTTTGTTTTCCCAGTTTAATGTTTTTCTGTTTGCAAGGAAATGAATGTTATGTTATAACTCTATTGTACTACTGTTTTGTGAAAATTGGTCTTTTTTTATATAACAGTTGTCGAAAGGAACCAATGGACAATTTTTTAAATGGGTTTAATTGAAGTTTATAATGATAATTAATAGTGGTATATGATTTTCCTCAAGTTTTGGTGGCACCAAGCGCTCTATTTTATTTGTTTCTAGGGCATGGTTTTTGTATCACTTACTAAAACTCTGATTTCTTGACAGCAACAATGACAAAAATAATTAAGGAGATGTTACCGCAAGATGTCCGCGTGGCGAGAGACACCCAAGATCTATTGATCGAGTGCTGTGTAGGTCAGAATTTCACACTCTACGACTATTTTATTCTCACTATACTGTGTCTGTTTATTGAGTTTATTATTTTATTTCAGGGTTTTATTTATGTAAATTTATTGAGTTTCTTCTTTTATTTTAGGTTTTTATTTATCTAGATTCTAGTGTGTATCCTAGTTGCTTGAAACATGATAGTGCTATTCTGTTATGTCGACAAATTTTTTCCATGGATTATAATTAAAATGTTTTTATTTTATTTTGTAATTAAAATGTTTTTTTATTTTTTTTGAGGGGAATTAAAATGGTTGCTGTGGCCTAGTGATATTTGGTTATTATTTTCTGCACAGTTTATTAATGATACACGATCAGTATATCTTTTCAGGGTTAATTTAGATTCAAATCTGAGGAATAATAACCCAACCATAATATACCATATGATCCATAAATCACCATAATATACAGTCATATAGTATCTTTGGCGATAACCCATAAGATTATATAAATTTGCCGTCTTGTTTTTAGATCGATTACGCCGGCCATAGTAGTATCTTTGGCGATAACAGCATGCCATTTTTATTTTATGTCTGTCTAAATTTTTTTTAGGCTGTTTAGGCTTACTAGATTACGGTGACCATTTATTTTTGATAATCTTAGCTTACGACTGTTACTGAATAAGATTTTGTTGGTTTATTTTTTTGTTAGAGTTTATAAATCTCATCTCATCGGAGTCCAATGAAGTATGTAGCAGAGAGGACAAAAGGACTATTGCGCCTGAGCACGTATTGAAGGCTCTACAGGTATTTGTTCTCTCTATAAATCCAAAGTTCTGCACAGCCATCTGGTTCTTATCTGTTATTCATATTAAATTTGACTATTCAAATGGGACCATACATCTTGGGCACTGTTATGTTTGGCCAAGGTTCTTAATGATACAATGTAAACAAGCTATGCTTTAGGATTTACTTTAGTTTAATTTCTCTCTCTACCGTAACTGATGTGAAAGAAGGCATTTTTGCCTTCGTAGTCAAAATTGAAACCACATTTATTTCATTTCACTTTTATCTGAAAGAGACTTGAGCCAAACATTCCAACACCTAAAATTTAACTACTCAATACTTGATCAGACCATCCTTTATTGATTAAAGATCTATTACTTGATCTTACTAAGTATAGTGCCCTGTTTCCCAGACCATAAAATGTGTGCACTCACGAGCCACGAGATATTACCTCGTCCTGAAGCACAATAGCAGCTGGCCCATAGTTTTTTTTTAGTTAAGGTTATACCCTGTTATTCAACTTTTCCTGCAAACTGGTTGTAATTAATCATATTGAAATGCATCTTACCTGCCTTACATACATATTTATCTCTGTAGAATGTCTCAATTAAAAAAATCCATTTCATTCAAAACAAATTTATTTCAATTCTAAAATCGGAGTGTTACAAACACAACATATAACATGCATGATATTGTCAATCGTATGCTCATCTGATGCTTTTAAACATGCCTGATATGATTTCGTTTATTGATTTTCACATTTTCCCCAGGTGCTTGGATTTGGCGAGTACATTGAAGAAGTTTATGCAGCATACGAACAACACAAGCTGGAGACCATGGTAATTTTGATTATGAATGCCCCGTATTTATGCTGAATACTTGAGTAGTATCAAACAAATTAGCATATCAGTCATCTTTCCTTTAAAATGTATGAATACTTGCTACCAAAACAAAAAATAGTGTAAAATGCATCCCAAATAAAAGTTAGTGTAGAGTGCTCTCTAAGATGAACCATTTTAGTTTGTGTTTTTAAATCGGGGCAGATGATAAACAGACCGCGTTGAGGGGCTCCTGCAGAGCTTATTGATGATTCTCTAATAAAGAAGCCTCAAAATCCGTCACTTTTCCCGCCTAACCCAAACGACGTGGAGACCTTAGGAATTGGTGTCGTATAGATATGCACACCGTAAAGATTTTAATGGGGTGTTTTCGGCGTGGCATTCAAGAGAATGACCTCTGCTGTCTGTTAAAATTAATATCTCCTACATATTTCTTAGTAGTTATTATTGTCTATGCTTGTTGAATTCTTAGACTTTCTGTTAAACTCCCCAATAAATAGCTTGGTGTTCTGTAGTTATGAGGAATGAGGATTTTGTGCTTGCACAAAGATAACCCATCTGGGATTTATTTGAGTTCACGAGTGTTCTGGATTTCATTACATGAACTCTCATTGACATTGTGTGGCTATTGAGAGACAATAGGGTCTGTTACTATGTAGTGTTTATTGATCTTGGATCAAATAAATTACCACCATTGCATATGATTTTACTTTTTAAATGAGAAACTAGTTTTTGATAGATTTTATAATTATTATTTCAGCAAGATACTTTAAAAGCTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAACAAGCATTAGCAGAACAACAAAGGATGTTTGCAGAGGCCCGCGCTAGGATGAATGGTGGGGCCATTGCTCCAAAACAGCCAGATGGTGACCAAAATTAG

Protein sequence

>MS.gene044533.t1

MDPMDIVGKSKEDASLPKATMTKIIKEMLPQDVRVARDTQDLLIECCVEFINLISSESNEVCSREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMQDTLKAGKWSNGAEMTEEQALAEQQRMFAEARARMNGGAIAPKQPDGDQN