Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045231.t1 | XP_003601828.1 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 2.20E-189 | 671.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045231.t1 | P04796 | 90.1 | 335 | 33 | 0 | 3 | 337 | 2 | 336 | 1.0e-174 | 614.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045231.t1 | G7J2H2 | 99.7 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 1.6e-189 | 671.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045231 | MS.gene72216 | PPI |
| MS.gene52287 | MS.gene045231 | PPI |
| MS.gene013566 | MS.gene045231 | PPI |
| MS.gene06894 | MS.gene045231 | PPI |
| MS.gene045231 | MS.gene024334 | PPI |
| MS.gene06683 | MS.gene045231 | PPI |
| MS.gene057128 | MS.gene045231 | PPI |
| MS.gene51927 | MS.gene045231 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045231.t1 | MTR_3g085850 | 99.706 | 340 | 1 | 0 | 1 | 340 | 1 | 340 | 0.0 | 691 |
| MS.gene045231.t1 | MTR_4g103920 | 90.060 | 332 | 33 | 0 | 6 | 337 | 5 | 336 | 0.0 | 621 |
| MS.gene045231.t1 | MTR_3g085850 | 99.661 | 295 | 1 | 0 | 46 | 340 | 1 | 295 | 0.0 | 600 |
| MS.gene045231.t1 | MTR_6g022630 | 86.250 | 320 | 44 | 0 | 6 | 325 | 3 | 322 | 0.0 | 577 |
| MS.gene045231.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 78 | 414 | 0.0 | 509 |
| MS.gene045231.t1 | MTR_2g065470 | 72.781 | 338 | 91 | 1 | 2 | 339 | 19 | 355 | 0.0 | 506 |
| MS.gene045231.t1 | MTR_4g103920 | 88.973 | 263 | 29 | 0 | 6 | 268 | 5 | 267 | 5.17e-176 | 489 |
| MS.gene045231.t1 | MTR_2g065470 | 73.457 | 324 | 85 | 1 | 2 | 325 | 78 | 400 | 1.16e-175 | 493 |
| MS.gene045231.t1 | MTR_8g046560 | 76.378 | 254 | 46 | 4 | 84 | 325 | 7 | 258 | 1.75e-126 | 372 |
| MS.gene045231.t1 | MTR_3g115920 | 47.447 | 333 | 166 | 7 | 6 | 332 | 85 | 414 | 4.56e-88 | 272 |
| MS.gene045231.t1 | MTR_7g084800 | 46.687 | 332 | 171 | 5 | 4 | 332 | 67 | 395 | 1.78e-85 | 264 |
| MS.gene045231.t1 | MTR_3g115920 | 46.933 | 326 | 164 | 7 | 6 | 325 | 85 | 407 | 8.77e-85 | 262 |
| MS.gene045231.t1 | MTR_3g115920 | 49.286 | 280 | 137 | 4 | 63 | 338 | 8 | 286 | 1.42e-77 | 240 |
| MS.gene045231.t1 | MTR_8g464820 | 83.108 | 148 | 16 | 2 | 180 | 327 | 1 | 139 | 7.70e-77 | 240 |
| MS.gene045231.t1 | MTR_1680s0010 | 45.000 | 140 | 72 | 2 | 180 | 315 | 1 | 139 | 3.43e-30 | 119 |
| MS.gene045231.t1 | MTR_2g078600 | 80.952 | 63 | 12 | 0 | 220 | 282 | 84 | 146 | 9.79e-26 | 100 |
| MS.gene045231.t1 | MTR_0776s0010 | 37.500 | 128 | 74 | 3 | 4 | 128 | 1786 | 1910 | 5.26e-17 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene045231.t1 | AT1G13440 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene045231.t1 | AT3G04120 | 89.552 | 335 | 35 | 0 | 3 | 337 | 2 | 336 | 0.0 | 626 |
| MS.gene045231.t1 | AT1G13440 | 82.090 | 335 | 32 | 1 | 3 | 337 | 2 | 308 | 0.0 | 556 |
| MS.gene045231.t1 | AT1G79530 | 72.271 | 339 | 93 | 1 | 2 | 340 | 82 | 419 | 0.0 | 511 |
| MS.gene045231.t1 | AT1G16300 | 71.893 | 338 | 94 | 1 | 3 | 340 | 81 | 417 | 1.47e-180 | 506 |
| MS.gene045231.t1 | AT1G42970 | 47.493 | 339 | 169 | 7 | 6 | 338 | 81 | 416 | 9.08e-95 | 289 |
| MS.gene045231.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene045231.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 12 | 341 | 3.13e-90 | 274 |
| MS.gene045231.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 61 | 390 | 7.45e-90 | 275 |
| MS.gene045231.t1 | AT1G12900 | 48.048 | 333 | 167 | 5 | 3 | 332 | 103 | 432 | 1.69e-89 | 275 |
| MS.gene045231.t1 | AT3G26650 | 46.246 | 333 | 173 | 5 | 3 | 332 | 58 | 387 | 2.23e-86 | 266 |
| MS.gene045231.t1 | AT1G12900 | 49.814 | 269 | 132 | 3 | 66 | 332 | 41 | 308 | 8.88e-74 | 231 |
Find 85 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGCAAGCTGAAGGGTATTT+TGG | 0.162108 | 3.3:-71633465 | MS.gene045231:CDS |
| CCTCTCCAGTCCTTGCTTGA+TGG | 0.259153 | 3.3:+71633896 | None:intergenic |
| ACTTTGTGAAACTCGTTTCT+TGG | 0.270714 | 3.3:-71633247 | MS.gene045231:CDS |
| GTCAATTTACCGTTCAATAC+TGG | 0.280860 | 3.3:+71633695 | None:intergenic |
| CAGGTTATTAATGACCGATT+TGG | 0.281961 | 3.3:-71634155 | MS.gene045231:CDS |
| CTTGGCAGCTCCAGTGCTGC+TGG | 0.294421 | 3.3:+71633844 | None:intergenic |
| AAAACAGGATTTGGAAGAAT+TGG | 0.309904 | 3.3:-71635257 | MS.gene045231:intron |
| GACACTAAGACCCTTCTCTT+TGG | 0.356905 | 3.3:-71634996 | MS.gene045231:CDS |
| AAACATAGGTGCATCTTTGC+TGG | 0.359553 | 3.3:+71634361 | None:intergenic |
| ATTCAAAGCAATTCCAGCTT+TGG | 0.384329 | 3.3:+71633274 | None:intergenic |
| ATGACAACGAATGGGGTTAC+AGG | 0.389525 | 3.3:-71633223 | MS.gene045231:intron |
| GTGGTATCTACTGACTTTAT+TGG | 0.395775 | 3.3:-71633425 | MS.gene045231:CDS |
| TCACCCCATGGAATCTCCTC+AGG | 0.421872 | 3.3:+71634833 | None:intergenic |
| GCCACTCAGAAGACTGTTGA+TGG | 0.424666 | 3.3:-71633920 | MS.gene045231:CDS |
| AGCAGAAATAACAACCTTCT+TGG | 0.437227 | 3.3:+71634385 | None:intergenic |
| CAAAGCTGCTGCTCACTTGA+AGG | 0.450187 | 3.3:-71634759 | MS.gene045231:intron |
| CAGTTGTTGACCTTACTGTA+AGG | 0.450759 | 3.3:-71633637 | MS.gene045231:CDS |
| AGCATCTTTGATGCCAAAGC+TGG | 0.451793 | 3.3:-71633287 | MS.gene045231:CDS |
| GATTGTCCACATTGCTTCTG+TGG | 0.453352 | 3.3:-71633082 | MS.gene045231:CDS |
| GACCGATTTGGAATCGTTGA+GGG | 0.456120 | 3.3:-71634143 | MS.gene045231:CDS |
| TTGGAAACAATGTTAAGCTC+TGG | 0.470905 | 3.3:+71634308 | None:intergenic |
| TTCTTGGTATGACAACGAAT+GGG | 0.472520 | 3.3:-71633231 | MS.gene045231:CDS |
| TCTTCTCAAGCCTTACAGTA+AGG | 0.474802 | 3.3:+71633627 | None:intergenic |
| AACATCATTCCCAGCAGCAC+TGG | 0.480002 | 3.3:-71633854 | MS.gene045231:CDS |
| GATGCACCTATGTTTGTTGT+TGG | 0.480077 | 3.3:-71634353 | MS.gene045231:CDS |
| TGGGACACGGAATGACATTC+CGG | 0.489853 | 3.3:+71633673 | None:intergenic |
| TTCAAGTATGACACTGTTCA+CGG | 0.491509 | 3.3:-71635050 | MS.gene045231:CDS |
| ATTTGGAAGAATTGGACGAT+TGG | 0.494519 | 3.3:-71635249 | MS.gene045231:CDS |
| TAGCATCTGACAAGAAGATC+AGG | 0.494730 | 3.3:-71635383 | MS.gene045231:CDS |
| GATTACGTTATTGAGTCAAC+TGG | 0.498321 | 3.3:-71634800 | MS.gene045231:CDS |
| GAGATTCCATGGGGTGAGGT+TGG | 0.499881 | 3.3:-71634827 | MS.gene045231:CDS |
| GACCCTCAACGATTCCAAAT+CGG | 0.501135 | 3.3:+71634141 | None:intergenic |
| CTGACTTTATTGGCGATAGC+AGG | 0.501827 | 3.3:-71633415 | MS.gene045231:intron |
| TTTCTTGGTATGACAACGAA+TGG | 0.505583 | 3.3:-71633232 | MS.gene045231:CDS |
| GGAATCAGAGGGCAAGCTGA+AGG | 0.509794 | 3.3:-71633474 | MS.gene045231:CDS |
| GATAAATAAACAACCTGTGA+TGG | 0.511375 | 3.3:+71634100 | None:intergenic |
| CAACTGAAACATCGACGGTT+GGG | 0.515252 | 3.3:+71633654 | None:intergenic |
| TTTCATCACTACTGATTACA+TGG | 0.515255 | 3.3:-71635171 | MS.gene045231:intron |
| CAGCAGCACTGGAGCTGCCA+AGG | 0.520669 | 3.3:-71633843 | MS.gene045231:intron |
| GGCAGCCTTGATCTGCTCAT+AGG | 0.524781 | 3.3:+71633598 | None:intergenic |
| TTGGCAGCTCCAGTGCTGCT+GGG | 0.526344 | 3.3:+71633845 | None:intergenic |
| AAACATCGACGGTTGGGACA+CGG | 0.531370 | 3.3:+71633660 | None:intergenic |
| CTTCTTTCTCACCAAAGAGA+AGG | 0.533597 | 3.3:+71634985 | None:intergenic |
| TTCTTTCTCACCAAAGAGAA+GGG | 0.538245 | 3.3:+71634986 | None:intergenic |
| ACAACTGAAACATCGACGGT+TGG | 0.545734 | 3.3:+71633653 | None:intergenic |
| GTTAGTAGTGCAACTAGCAT+TGG | 0.551894 | 3.3:+71634289 | None:intergenic |
| AACATAGGTGCATCTTTGCT+GGG | 0.553014 | 3.3:+71634362 | None:intergenic |
| ATGGTCCATCAAGCAAGGAC+TGG | 0.555599 | 3.3:-71633901 | MS.gene045231:CDS |
| CTGCCTTGCTCCCCTCGCCA+AGG | 0.563779 | 3.3:-71634267 | MS.gene045231:intron |
| ATGACACTGTTCACGGTCAG+TGG | 0.566865 | 3.3:-71635043 | MS.gene045231:CDS |
| AGCAACCTATGAGCAGATCA+AGG | 0.567372 | 3.3:-71633603 | MS.gene045231:CDS |
| AAACCTTGGCGAGGGGAGCA+AGG | 0.568255 | 3.3:+71634264 | None:intergenic |
| GGAACCCTGAGGAGATTCCA+TGG | 0.575104 | 3.3:-71634838 | MS.gene045231:CDS |
| TTAACACCAACAACAAACAT+AGG | 0.578256 | 3.3:+71634347 | None:intergenic |
| TGAGGAGATTCCATGGGGTG+AGG | 0.584999 | 3.3:-71634831 | MS.gene045231:CDS |
| TGACCGATTTGGAATCGTTG+AGG | 0.585725 | 3.3:-71634144 | MS.gene045231:CDS |
| ATTTGAAACATACAGGCTGT+AGG | 0.586694 | 3.3:-71633728 | MS.gene045231:intron |
| GAACCCTGAGGAGATTCCAT+GGG | 0.589804 | 3.3:-71634837 | MS.gene045231:CDS |
| TCAAGCAAGGACTGGAGAGG+TGG | 0.590129 | 3.3:-71633893 | MS.gene045231:CDS |
| GTATTGAACGGTAAATTGAC+CGG | 0.592350 | 3.3:-71633692 | MS.gene045231:CDS |
| ACCACAGTTCACGCCATCAC+AGG | 0.598843 | 3.3:-71634113 | MS.gene045231:intron |
| AAGATCAGGATCGGAATCAA+CGG | 0.599281 | 3.3:-71635369 | MS.gene045231:intron |
| TGATTAGGGTGGTGCCAAGA+AGG | 0.600438 | 3.3:-71634399 | MS.gene045231:intron |
| CACCCCATGGAATCTCCTCA+GGG | 0.600637 | 3.3:+71634834 | None:intergenic |
| GCTGCTGGGAATGATGTTGA+AGG | 0.601432 | 3.3:+71633859 | None:intergenic |
| TCAGCTCCAACCTCACCCCA+TGG | 0.603751 | 3.3:+71634821 | None:intergenic |
| TGTTGTTGGTGTTAACGAGA+AGG | 0.604083 | 3.3:-71634339 | MS.gene045231:CDS |
| GAATCAGAGGGCAAGCTGAA+GGG | 0.606362 | 3.3:-71633473 | MS.gene045231:CDS |
| GACAATCAAATCAATAACAC+GGG | 0.607012 | 3.3:+71633098 | None:intergenic |
| AGTGTCATACTTGAACATAT+AGG | 0.610966 | 3.3:+71635058 | None:intergenic |
| ATGTAATCAGTAGTGATGAA+AGG | 0.611234 | 3.3:+71635173 | None:intergenic |
| TCTTGGTATGACAACGAATG+GGG | 0.619721 | 3.3:-71633230 | MS.gene045231:CDS |
| GGGTTACACTGAAGATGATG+TGG | 0.627513 | 3.3:-71633444 | MS.gene045231:CDS |
| TCTGACAAGAAGATCAGGAT+CGG | 0.628839 | 3.3:-71635378 | MS.gene045231:CDS |
| TGTTGATGGTCCATCAAGCA+AGG | 0.632457 | 3.3:-71633906 | MS.gene045231:CDS |
| GTCAACAACTGAAACATCGA+CGG | 0.646627 | 3.3:+71633649 | None:intergenic |
| CCATCAAGCAAGGACTGGAG+AGG | 0.655042 | 3.3:-71633896 | MS.gene045231:CDS |
| GGACAATCAAATCAATAACA+CGG | 0.656794 | 3.3:+71633097 | None:intergenic |
| AAAACCAGGGAGGAATCAGA+GGG | 0.660427 | 3.3:-71633485 | MS.gene045231:intron |
| ACCTGTGATGGCGTGAACTG+TGG | 0.667657 | 3.3:+71634112 | None:intergenic |
| AAAGTGCTTCCAGTATTGAA+CGG | 0.668457 | 3.3:-71633704 | MS.gene045231:CDS |
| ATCAAGCCACAGAAGCAATG+TGG | 0.677587 | 3.3:+71633076 | None:intergenic |
| AACCCTGAGGAGATTCCATG+GGG | 0.716862 | 3.3:-71634836 | MS.gene045231:CDS |
| ACCATCAACAGTCTTCTGAG+TGG | 0.726815 | 3.3:+71633919 | None:intergenic |
| TCTGAATAATAGGAACCCTG+AGG | 0.747270 | 3.3:-71634849 | MS.gene045231:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAATTTATGTAATT+TGG | - | chr3.3:71634140-71634159 | MS.gene045231:CDS | 10.0% |
| !! | AAATTTGTCAAATTATTACA+TGG | - | chr3.3:71634768-71634787 | MS.gene045231:CDS | 15.0% |
| !! | TATCAAAATCTAATTAATTG+TGG | + | chr3.3:71634118-71634137 | None:intergenic | 15.0% |
| !!! | TGTTTGATTAATTTTGTAAT+CGG | + | chr3.3:71633440-71633459 | None:intergenic | 15.0% |
| !!! | TTTTAAATTATTAGCTTCAT+TGG | - | chr3.3:71634368-71634387 | MS.gene045231:CDS | 15.0% |
| !! | AATTAATTACAACATCCAAA+AGG | + | chr3.3:71633672-71633691 | None:intergenic | 20.0% |
| !! | ATTAATTACAACATCCAAAA+GGG | + | chr3.3:71633671-71633690 | None:intergenic | 20.0% |
| !! | TAAACGAGAAATAGATTAAA+CGG | + | chr3.3:71633141-71633160 | None:intergenic | 20.0% |
| !!! | AACTGTTTTAACTTTAAAAC+AGG | - | chr3.3:71633300-71633319 | MS.gene045231:intron | 20.0% |
| !!! | ATATTGAATTTGAAACATAC+AGG | - | chr3.3:71634837-71634856 | MS.gene045231:CDS | 20.0% |
| !!! | ATTATTTGATAGAGCATTTT+GGG | - | chr3.3:71633868-71633887 | MS.gene045231:CDS | 20.0% |
| !!! | TAATTTATGATCTGTGATTT+TGG | - | chr3.3:71633630-71633649 | MS.gene045231:CDS | 20.0% |
| !!! | TATTAATTTTTACTCTTTGC+AGG | - | chr3.3:71634398-71634417 | MS.gene045231:intron | 20.0% |
| !!! | TATTATTTGATAGAGCATTT+TGG | - | chr3.3:71633867-71633886 | MS.gene045231:CDS | 20.0% |
| !!! | TTTAACTTTAAAACAGGATT+TGG | - | chr3.3:71633306-71633325 | MS.gene045231:intron | 20.0% |
| !!! | TTTTGCAATTTCAACAAAAT+AGG | + | chr3.3:71635070-71635089 | None:intergenic | 20.0% |
| ! | AAAATAGGTTTATGTTAGGA+GGG | + | chr3.3:71635055-71635074 | None:intergenic | 25.0% |
| ! | AAGTTTAACACTTTACTTGA+TGG | + | chr3.3:71634998-71635017 | None:intergenic | 25.0% |
| ! | AGAAAAAGGAAAAAGGAAAA+AGG | + | chr3.3:71633108-71633127 | None:intergenic | 25.0% |
| ! | ATCACAATATGACATTGAAT+TGG | - | chr3.3:71635388-71635407 | MS.gene045231:intron | 25.0% |
| ! | CAAATTATTACATGGTTGAA+TGG | - | chr3.3:71634776-71634795 | MS.gene045231:CDS | 25.0% |
| ! | CAACAAAATAGGTTTATGTT+AGG | + | chr3.3:71635059-71635078 | None:intergenic | 25.0% |
| ! | TGATTAACTGATTGATTGTT+TGG | - | chr3.3:71634617-71634636 | MS.gene045231:intron | 25.0% |
| ! | TTAAGAGAGAAAAAGGAAAA+AGG | + | chr3.3:71633115-71633134 | None:intergenic | 25.0% |
| ! | TTATGTAATTTGGATTGTTG+TGG | - | chr3.3:71634150-71634169 | MS.gene045231:CDS | 25.0% |
| !! | GATGAACACTATGTATATTT+TGG | + | chr3.3:71635418-71635437 | None:intergenic | 25.0% |
| !! | TTTATCATTATAGAGTACCT+TGG | + | chr3.3:71634749-71634768 | None:intergenic | 25.0% |
| !!! | TGAACTTTATTTTCATTTGC+AGG | - | chr3.3:71635259-71635278 | MS.gene045231:intron | 25.0% |
| !!! | TTATTTGATAGAGCATTTTG+GGG | - | chr3.3:71633869-71633888 | MS.gene045231:CDS | 25.0% |
| AAAACAGGATTTGGAAGAAT+TGG | - | chr3.3:71633315-71633334 | MS.gene045231:intron | 30.0% | |
| AATGTCATATTGTGATAGCA+AGG | + | chr3.3:71635384-71635403 | None:intergenic | 30.0% | |
| ACCAATAAACATGCTACAAA+AGG | + | chr3.3:71634345-71634364 | None:intergenic | 30.0% | |
| AGTGTCATACTTGAACATAT+AGG | + | chr3.3:71633517-71633536 | None:intergenic | 30.0% | |
| ATCACAGATCATAAATTACC+TGG | + | chr3.3:71633628-71633647 | None:intergenic | 30.0% | |
| ATGTAATCAGTAGTGATGAA+AGG | + | chr3.3:71633402-71633421 | None:intergenic | 30.0% | |
| CAAAATAGGTTTATGTTAGG+AGG | + | chr3.3:71635056-71635075 | None:intergenic | 30.0% | |
| CCAATAAACATGCTACAAAA+GGG | + | chr3.3:71634344-71634363 | None:intergenic | 30.0% | |
| GACAATCAAATCAATAACAC+GGG | + | chr3.3:71635477-71635496 | None:intergenic | 30.0% | |
| GATAAATAAACAACCTGTGA+TGG | + | chr3.3:71634475-71634494 | None:intergenic | 30.0% | |
| GGACAATCAAATCAATAACA+CGG | + | chr3.3:71635478-71635497 | None:intergenic | 30.0% | |
| GGAGGGAAAAATTATTCAAT+TGG | + | chr3.3:71635038-71635057 | None:intergenic | 30.0% | |
| TCTGATTGCATCTGAATAAT+AGG | - | chr3.3:71633713-71633732 | MS.gene045231:CDS | 30.0% | |
| TGTATCGAATCATTCAAACA+GGG | + | chr3.3:71634065-71634084 | None:intergenic | 30.0% | |
| TGTTGAAATTGCAAAAACCA+GGG | - | chr3.3:71635074-71635093 | MS.gene045231:intron | 30.0% | |
| TTAACACCAACAACAAACAT+AGG | + | chr3.3:71634228-71634247 | None:intergenic | 30.0% | |
| TTGTTGAAATTGCAAAAACC+AGG | - | chr3.3:71635073-71635092 | MS.gene045231:intron | 30.0% | |
| ! | AAACTGTCATGATCAGTTTT+TGG | - | chr3.3:71635211-71635230 | MS.gene045231:CDS | 30.0% |
| ! | GCATTTTGAACTTAAGGTTA+AGG | - | chr3.3:71633554-71633573 | MS.gene045231:intron | 30.0% |
| ! | TTTCATCACTACTGATTACA+TGG | - | chr3.3:71633401-71633420 | MS.gene045231:intron | 30.0% |
| !! | AGGGTATTGAAAAAAAACCT+TGG | + | chr3.3:71634325-71634344 | None:intergenic | 30.0% |
| ACGGTGATTAAGAGAGAAAA+AGG | + | chr3.3:71633122-71633141 | None:intergenic | 35.0% | |
| ACTTTGTGAAACTCGTTTCT+TGG | - | chr3.3:71635325-71635344 | MS.gene045231:intron | 35.0% | |
| AGCAGAAATAACAACCTTCT+TGG | + | chr3.3:71634190-71634209 | None:intergenic | 35.0% | |
| ATTCAAAGCAATTCCAGCTT+TGG | + | chr3.3:71635301-71635320 | None:intergenic | 35.0% | |
| ATTGAAAAAAAACCTTGGCG+AGG | + | chr3.3:71634320-71634339 | None:intergenic | 35.0% | |
| ATTTGGAAGAATTGGACGAT+TGG | - | chr3.3:71633323-71633342 | MS.gene045231:intron | 35.0% | |
| CAGGTTATTAATGACCGATT+TGG | - | chr3.3:71634417-71634436 | MS.gene045231:intron | 35.0% | |
| CTGTATCGAATCATTCAAAC+AGG | + | chr3.3:71634066-71634085 | None:intergenic | 35.0% | |
| GATTACGTTATTGAGTCAAC+TGG | - | chr3.3:71633772-71633791 | MS.gene045231:intron | 35.0% | |
| GTATTGAACGGTAAATTGAC+CGG | - | chr3.3:71634880-71634899 | MS.gene045231:intron | 35.0% | |
| GTCAATTTACCGTTCAATAC+TGG | + | chr3.3:71634880-71634899 | None:intergenic | 35.0% | |
| TTCAAGTATGACACTGTTCA+CGG | - | chr3.3:71633522-71633541 | MS.gene045231:intron | 35.0% | |
| TTCTTGGTATGACAACGAAT+GGG | - | chr3.3:71635341-71635360 | MS.gene045231:intron | 35.0% | |
| TTCTTTCTCACCAAAGAGAA+GGG | + | chr3.3:71633589-71633608 | None:intergenic | 35.0% | |
| TTGAAAAAAAACCTTGGCGA+GGG | + | chr3.3:71634319-71634338 | None:intergenic | 35.0% | |
| TTGGAAACAATGTTAAGCTC+TGG | + | chr3.3:71634267-71634286 | None:intergenic | 35.0% | |
| TTGGATTGTTGTGGTGATTA+GGG | - | chr3.3:71634159-71634178 | MS.gene045231:intron | 35.0% | |
| TTTCTTGGTATGACAACGAA+TGG | - | chr3.3:71635340-71635359 | MS.gene045231:intron | 35.0% | |
| TTTGGATTGTTGTGGTGATT+AGG | - | chr3.3:71634158-71634177 | MS.gene045231:intron | 35.0% | |
| ! | AAAGTGCTTCCAGTATTGAA+CGG | - | chr3.3:71634868-71634887 | MS.gene045231:intron | 35.0% |
| ! | ATTTGAAACATACAGGCTGT+AGG | - | chr3.3:71634844-71634863 | MS.gene045231:intron | 35.0% |
| ! | CCCTTTTGTAGCATGTTTAT+TGG | - | chr3.3:71634341-71634360 | MS.gene045231:CDS | 35.0% |
| !! | GTGGTATCTACTGACTTTAT+TGG | - | chr3.3:71635147-71635166 | MS.gene045231:intron | 35.0% |
| !!! | GAGAAAGAAGTTGCTGTTTT+CGG | - | chr3.3:71633600-71633619 | MS.gene045231:CDS | 35.0% |
| !!! | GTGGAAGCATTTTGAACTTA+AGG | - | chr3.3:71633548-71633567 | MS.gene045231:intron | 35.0% |
| AAACAACGAGATTCGAACTC+TGG | - | chr3.3:71633455-71633474 | MS.gene045231:CDS | 40.0% | |
| AAACATAGGTGCATCTTTGC+TGG | + | chr3.3:71634214-71634233 | None:intergenic | 40.0% | |
| AACATAGGTGCATCTTTGCT+GGG | + | chr3.3:71634213-71634232 | None:intergenic | 40.0% | |
| AAGATCAGGATCGGAATCAA+CGG | - | chr3.3:71633203-71633222 | MS.gene045231:intron | 40.0% | |
| ATTGTCTCACTCAGTAGAGT+CGG | + | chr3.3:71633912-71633931 | None:intergenic | 40.0% | |
| CAGTTGTTGACCTTACTGTA+AGG | - | chr3.3:71634935-71634954 | MS.gene045231:intron | 40.0% | |
| CTTCTTTCTCACCAAAGAGA+AGG | + | chr3.3:71633590-71633609 | None:intergenic | 40.0% | |
| GTCAACAACTGAAACATCGA+CGG | + | chr3.3:71634926-71634945 | None:intergenic | 40.0% | |
| GTTAGTAGTGCAACTAGCAT+TGG | + | chr3.3:71634286-71634305 | None:intergenic | 40.0% | |
| TAGCATCTGACAAGAAGATC+AGG | - | chr3.3:71633189-71633208 | MS.gene045231:intron | 40.0% | |
| TCTGAATAATAGGAACCCTG+AGG | - | chr3.3:71633723-71633742 | MS.gene045231:intron | 40.0% | |
| TCTGACAAGAAGATCAGGAT+CGG | - | chr3.3:71633194-71633213 | MS.gene045231:intron | 40.0% | |
| TCTTCTCAAGCCTTACAGTA+AGG | + | chr3.3:71634948-71634967 | None:intergenic | 40.0% | |
| TCTTGGTATGACAACGAATG+GGG | - | chr3.3:71635342-71635361 | MS.gene045231:intron | 40.0% | |
| TGAAAAAAAACCTTGGCGAG+GGG | + | chr3.3:71634318-71634337 | None:intergenic | 40.0% | |
| TGAAATTGCAAAAACCAGGG+AGG | - | chr3.3:71635077-71635096 | MS.gene045231:intron | 40.0% | |
| ! | AACTGGTGTTTTCACTGACA+AGG | - | chr3.3:71633789-71633808 | MS.gene045231:intron | 40.0% |
| ! | TCTGAATCTCATGTCCCTTT+TGG | - | chr3.3:71633654-71633673 | MS.gene045231:CDS | 40.0% |
| !! | GATGCACCTATGTTTGTTGT+TGG | - | chr3.3:71634219-71634238 | MS.gene045231:intron | 40.0% |
| !! | TGTTGTTGGTGTTAACGAGA+AGG | - | chr3.3:71634233-71634252 | MS.gene045231:intron | 40.0% |
| AAAAACCAGGGAGGAATCAG+AGG | - | chr3.3:71635086-71635105 | MS.gene045231:intron | 45.0% | |
| AAAACCAGGGAGGAATCAGA+GGG | - | chr3.3:71635087-71635106 | MS.gene045231:intron | 45.0% | |
| ACAACTGAAACATCGACGGT+TGG | + | chr3.3:71634922-71634941 | None:intergenic | 45.0% | |
| ACCATCAACAGTCTTCTGAG+TGG | + | chr3.3:71634656-71634675 | None:intergenic | 45.0% | |
| ACTCAGTAGAGTCGGATACA+TGG | + | chr3.3:71633904-71633923 | None:intergenic | 45.0% | |
| AGCAACCTATGAGCAGATCA+AGG | - | chr3.3:71634969-71634988 | MS.gene045231:CDS | 45.0% | |
| AGCATCTTTGATGCCAAAGC+TGG | - | chr3.3:71635285-71635304 | MS.gene045231:intron | 45.0% | |
| ATGACAACGAATGGGGTTAC+AGG | - | chr3.3:71635349-71635368 | MS.gene045231:intron | 45.0% | |
| CAACTGAAACATCGACGGTT+GGG | + | chr3.3:71634921-71634940 | None:intergenic | 45.0% | |
| CTGACTTTATTGGCGATAGC+AGG | - | chr3.3:71635157-71635176 | MS.gene045231:intron | 45.0% | |
| GACACTAAGACCCTTCTCTT+TGG | - | chr3.3:71633576-71633595 | MS.gene045231:intron | 45.0% | |
| GACCCTCAACGATTCCAAAT+CGG | + | chr3.3:71634434-71634453 | None:intergenic | 45.0% | |
| GATTGTCCACATTGCTTCTG+TGG | - | chr3.3:71635490-71635509 | MS.gene045231:intron | 45.0% | |
| GATTGTTGTGGTGATTAGGG+TGG | - | chr3.3:71634162-71634181 | MS.gene045231:intron | 45.0% | |
| GGGTTACACTGAAGATGATG+TGG | - | chr3.3:71635128-71635147 | MS.gene045231:intron | 45.0% | |
| TTGGCGATAGCAGGTAATGT+TGG | - | chr3.3:71635166-71635185 | MS.gene045231:intron | 45.0% | |
| !! | GACCGATTTGGAATCGTTGA+GGG | - | chr3.3:71634429-71634448 | MS.gene045231:intron | 45.0% |
| !! | TGACCGATTTGGAATCGTTG+AGG | - | chr3.3:71634428-71634447 | MS.gene045231:intron | 45.0% |
| !! | TGTTGATGGTCCATCAAGCA+AGG | - | chr3.3:71634666-71634685 | MS.gene045231:intron | 45.0% |
| !!! | AAGTTGCTGTTTTCGGAACC+AGG | - | chr3.3:71633607-71633626 | MS.gene045231:CDS | 45.0% |
| !!! | GGCAAGCTGAAGGGTATTTT+GGG | - | chr3.3:71635108-71635127 | MS.gene045231:intron | 45.0% |
| AAACATCGACGGTTGGGACA+CGG | + | chr3.3:71634915-71634934 | None:intergenic | 50.0% | |
| AACATCATTCCCAGCAGCAC+TGG | - | chr3.3:71634718-71634737 | MS.gene045231:intron | 50.0% | |
| AACCCTGAGGAGATTCCATG+GGG | - | chr3.3:71633736-71633755 | MS.gene045231:intron | 50.0% | |
| ATGACACTGTTCACGGTCAG+TGG | - | chr3.3:71633529-71633548 | MS.gene045231:intron | 50.0% | |
| ATGGTCCATCAAGCAAGGAC+TGG | - | chr3.3:71634671-71634690 | MS.gene045231:intron | 50.0% | |
| CAAAGCTGCTGCTCACTTGA+AGG | - | chr3.3:71633813-71633832 | MS.gene045231:intron | 50.0% | |
| GAACCCTGAGGAGATTCCAT+GGG | - | chr3.3:71633735-71633754 | MS.gene045231:intron | 50.0% | |
| GAATCAGAGGGCAAGCTGAA+GGG | - | chr3.3:71635099-71635118 | MS.gene045231:intron | 50.0% | |
| GCCACTCAGAAGACTGTTGA+TGG | - | chr3.3:71634652-71634671 | MS.gene045231:intron | 50.0% | |
| GCTGCTGGGAATGATGTTGA+AGG | + | chr3.3:71634716-71634735 | None:intergenic | 50.0% | |
| TGGGACACGGAATGACATTC+CGG | + | chr3.3:71634902-71634921 | None:intergenic | 50.0% | |
| ! | TGATTAGGGTGGTGCCAAGA+AGG | - | chr3.3:71634173-71634192 | MS.gene045231:intron | 50.0% |
| !!! | GGGCAAGCTGAAGGGTATTT+TGG | - | chr3.3:71635107-71635126 | MS.gene045231:intron | 50.0% |
| ACCACAGTTCACGCCATCAC+AGG | - | chr3.3:71634459-71634478 | MS.gene045231:intron | 55.0% | |
| CACCCCATGGAATCTCCTCA+GGG | + | chr3.3:71633741-71633760 | None:intergenic | 55.0% | |
| CCATCAAGCAAGGACTGGAG+AGG | - | chr3.3:71634676-71634695 | MS.gene045231:intron | 55.0% | |
| CCTCTCCAGTCCTTGCTTGA+TGG | + | chr3.3:71634679-71634698 | None:intergenic | 55.0% | |
| GAGATTCCATGGGGTGAGGT+TGG | - | chr3.3:71633745-71633764 | MS.gene045231:intron | 55.0% | |
| GGAACCCTGAGGAGATTCCA+TGG | - | chr3.3:71633734-71633753 | MS.gene045231:intron | 55.0% | |
| GGAATCAGAGGGCAAGCTGA+AGG | - | chr3.3:71635098-71635117 | MS.gene045231:intron | 55.0% | |
| GGCAGCCTTGATCTGCTCAT+AGG | + | chr3.3:71634977-71634996 | None:intergenic | 55.0% | |
| TCAAGCAAGGACTGGAGAGG+TGG | - | chr3.3:71634679-71634698 | MS.gene045231:intron | 55.0% | |
| TCACCCCATGGAATCTCCTC+AGG | + | chr3.3:71633742-71633761 | None:intergenic | 55.0% | |
| TGAGGAGATTCCATGGGGTG+AGG | - | chr3.3:71633741-71633760 | MS.gene045231:intron | 55.0% | |
| ! | ACCTGTGATGGCGTGAACTG+TGG | + | chr3.3:71634463-71634482 | None:intergenic | 55.0% |
| AAACCTTGGCGAGGGGAGCA+AGG | + | chr3.3:71634311-71634330 | None:intergenic | 60.0% | |
| CTTGCCCTCTGATTCCTCCC+TGG | + | chr3.3:71635094-71635113 | None:intergenic | 60.0% | |
| TCAGCTCCAACCTCACCCCA+TGG | + | chr3.3:71633754-71633773 | None:intergenic | 60.0% | |
| ! | TTGGCAGCTCCAGTGCTGCT+GGG | + | chr3.3:71634730-71634749 | None:intergenic | 60.0% |
| CTTGGCAGCTCCAGTGCTGC+TGG | + | chr3.3:71634731-71634750 | None:intergenic | 65.0% | |
| ! | CAGCAGCACTGGAGCTGCCA+AGG | - | chr3.3:71634729-71634748 | MS.gene045231:intron | 65.0% |
| CTGCCTTGCTCCCCTCGCCA+AGG | - | chr3.3:71634305-71634324 | MS.gene045231:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71633077 | 71635517 | 71633077 | ID=MS.gene045231 |
| chr3.3 | mRNA | 71633077 | 71635517 | 71633077 | ID=MS.gene045231.t1;Parent=MS.gene045231 |
| chr3.3 | exon | 71635514 | 71635517 | 71635514 | ID=MS.gene045231.t1.exon1;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71635514 | 71635517 | 71635514 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71635370 | 71635402 | 71635370 | ID=MS.gene045231.t1.exon2;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71635370 | 71635402 | 71635370 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71635172 | 71635272 | 71635172 | ID=MS.gene045231.t1.exon3;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71635172 | 71635272 | 71635172 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71634966 | 71635081 | 71634966 | ID=MS.gene045231.t1.exon4;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71634966 | 71635081 | 71634966 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71634760 | 71634859 | 71634760 | ID=MS.gene045231.t1.exon5;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71634760 | 71634859 | 71634760 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71634268 | 71634414 | 71634268 | ID=MS.gene045231.t1.exon6;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71634268 | 71634414 | 71634268 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71634114 | 71634174 | 71634114 | ID=MS.gene045231.t1.exon7;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71634114 | 71634174 | 71634114 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71633844 | 71633941 | 71633844 | ID=MS.gene045231.t1.exon8;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71633844 | 71633941 | 71633844 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71633593 | 71633735 | 71633593 | ID=MS.gene045231.t1.exon9;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71633593 | 71633735 | 71633593 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71633416 | 71633499 | 71633416 | ID=MS.gene045231.t1.exon10;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71633416 | 71633499 | 71633416 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71633224 | 71633313 | 71633224 | ID=MS.gene045231.t1.exon11;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71633224 | 71633313 | 71633224 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| chr3.3 | exon | 71633077 | 71633122 | 71633077 | ID=MS.gene045231.t1.exon12;Parent=MS.gene045231.t1 |
| chr3.3 | CDS | 71633077 | 71633122 | 71633077 | ID=cds.MS.gene045231.t1;Parent=MS.gene045231.t1 |
| Gene Sequence |
| Protein sequence |
