AlfalfaGEDB | MS.gene51927

M. sativa cultivar XinJiangDaYe / MS.gene51927

KEGG: K05298
GO: GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0006006 GO:0008150 GO:0008152 GO:0016491 GO:0016620 GO:0016903 GO:0019318 GO:0036094 GO:0044238 GO:0044281 GO:0048037 GO:0050661 GO:0050662 GO:0051287 GO:0055114 GO:0071704 GO:0097159 GO:1901265 GO:1901363
PFAM: PF00044.27 PF02800.23

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51927.t1	XP_003624553.1	99.8	404	1	0	1	404	1	404	4.20E-227	797

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51927.t1	P12858	89.1	405	43	1	1	404	1	405	1.2e-203	710.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51927.t1	G7KYC0	99.8	404	1	0	1	404	1	404	3.0e-227	797.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene51927	0.939947	5.39E-100	-1.69E-46
MS.gene049173	MS.gene51927	0.886624	2.91E-72	-1.69E-46
MS.gene049181	MS.gene51927	-0.803974	2.70E-49	-1.69E-46
MS.gene049217	MS.gene51927	0.896733	2.78E-76	-1.69E-46
MS.gene049222	MS.gene51927	0.930381	1.78E-93	-1.69E-46
MS.gene049232	MS.gene51927	0.92754	1.02E-91	-1.69E-46
MS.gene049259	MS.gene51927	-0.813468	2.52E-51	-1.69E-46
MS.gene049281	MS.gene51927	-0.814001	1.92E-51	-1.69E-46
MS.gene049285	MS.gene51927	0.971177	9.38E-133	-1.69E-46
MS.gene049313	MS.gene51927	-0.800544	1.37E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene066309	MS.gene51927	PPI
MS.gene067034	MS.gene51927	PPI
MS.gene069995	MS.gene51927	PPI
MS.gene074258	MS.gene51927	PPI
MS.gene51927	MS.gene064435	PPI
MS.gene51927	MS.gene79129	PPI
MS.gene51927	MS.gene044310	PPI
MS.gene51927	MS.gene70490	PPI
MS.gene51927	MS.gene038986	PPI
MS.gene51927	MS.gene25725	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51927.t1	MTR_7g084800	99.752	404	1	0	1	404	1	404	0.0	818
MS.gene51927.t1	MTR_3g115920	74.742	388	90	5	21	403	38	422	0.0	527
MS.gene51927.t1	MTR_3g115920	74.531	373	87	5	21	388	38	407	2.92e-178	503
MS.gene51927.t1	MTR_3g115920	80.139	287	54	3	120	403	2	288	1.36e-143	411
MS.gene51927.t1	MTR_2g065470	49.544	329	161	4	69	395	23	348	1.66e-103	311
MS.gene51927.t1	MTR_2g065470	49.544	329	161	4	69	395	82	407	4.64e-103	311
MS.gene51927.t1	MTR_2g065470	49.068	322	159	4	69	388	82	400	1.77e-99	302
MS.gene51927.t1	MTR_3g085850	46.988	332	170	5	67	395	4	332	3.30e-98	296
MS.gene51927.t1	MTR_4g103920	47.130	331	169	5	68	395	4	331	2.00e-95	289
MS.gene51927.t1	MTR_6g022630	45.820	323	169	5	69	388	3	322	6.22e-91	277

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51927.t1	AT1G12900	87.654	405	43	4	1	404	43	441	0.0	669
MS.gene51927.t1	AT1G12900	87.654	405	43	4	1	404	1	399	0.0	667
MS.gene51927.t1	AT3G26650	86.173	405	46	3	1	404	1	396	0.0	657
MS.gene51927.t1	AT1G12900	91.404	349	29	1	56	404	3	350	0.0	605
MS.gene51927.t1	AT1G12900	91.404	349	29	1	56	404	3	350	0.0	605
MS.gene51927.t1	AT1G42970	73.711	388	89	7	21	403	39	418	0.0	531
MS.gene51927.t1	AT1G12900	93.952	248	15	0	157	404	70	317	1.22e-152	434
MS.gene51927.t1	AT1G79530	47.904	334	169	4	69	400	86	416	5.25e-100	304
MS.gene51927.t1	AT1G16300	44.241	382	199	6	21	400	45	414	3.21e-99	302
MS.gene51927.t1	AT1G13440	47.006	334	171	5	65	395	1	331	1.69e-98	297

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Find 119 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAAGGTAGCCATAAA+CGG	0.442922	7.1:+20239094	MS.gene51927:CDS
AAAGGGAGCAAGGCAGTTAG+TGG	0.519303	7.1:-20240334	None:intergenic
AACATTGTGCCAACTTCAAC+CGG	0.389585	7.1:+20240785	MS.gene51927:CDS
AACCCTGCCAACCTTCCATG+GGG	0.654907	7.1:+20239334	MS.gene51927:CDS
AACCGGAGCAGCAAAGGCAG+TGG	0.541553	7.1:+20240802	MS.gene51927:CDS
AACTTCAACCGGAGCAGCAA+AGG	0.533569	7.1:+20240796	MS.gene51927:CDS
AACTTCTTGAGATGTTGGCA+TGG	0.607812	7.1:+20239136	MS.gene51927:CDS
AAGCCTTTGGTCACCGGTGT+AGG	0.479065	7.1:-20240714	None:intergenic
AAGGTACTCATCACAGCCCC+CGG	0.572475	7.1:+20240225	MS.gene51927:CDS
AAGGTAGCCATAAACGGATT+TGG	0.339175	7.1:+20239100	MS.gene51927:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAATCAACCAAGTCTAACA+TGG	+	chr7.1:20238547-20238566	MS.gene51927:intron	30.0%
ATAGAAATTGTCTATCGTCA+TGG	+	chr7.1:20239493-20239512	MS.gene51927:intron	30.0%
ATATTAAGACATTGGATCAC+AGG	+	chr7.1:20240659-20240678	MS.gene51927:intron	30.0%
ATGTTGTAGCAATAAAGCTA+GGG	+	chr7.1:20238241-20238260	MS.gene51927:intron	30.0%
ATGTTTGTACATTTGAAGGT+TGG	+	chr7.1:20239031-20239050	MS.gene51927:intron	30.0%
CTACATGTTTGTACATTTGA+AGG	+	chr7.1:20239027-20239046	MS.gene51927:intron	30.0%
GAGATAAAAACTTACTGCAT+TGG	-	chr7.1:20238452-20238471	None:intergenic	30.0%
GCAACAAAATCAATGAATGA+AGG	-	chr7.1:20239370-20239389	None:intergenic	30.0%
TGTTAGAAAATATGGCGATA+AGG	-	chr7.1:20240393-20240412	None:intergenic	30.0%
AAAATATCAACTCGAGACGT+AGG	+	chr7.1:20238760-20238779	MS.gene51927:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	20238137	20241183	20238137	ID=MS.gene51927
chr7.1	mRNA	20238137	20241183	20238137	ID=MS.gene51927.t1;Parent=MS.gene51927
chr7.1	exon	20238137	20238178	20238137	ID=MS.gene51927.t1.exon1;Parent=MS.gene51927.t1
chr7.1	CDS	20238137	20238178	20238137	ID=cds.MS.gene51927.t1;Parent=MS.gene51927.t1
chr7.1	exon	20238340	20238456	20238340	ID=MS.gene51927.t1.exon2;Parent=MS.gene51927.t1
chr7.1	CDS	20238340	20238456	20238340	ID=cds.MS.gene51927.t1;Parent=MS.gene51927.t1
chr7.1	exon	20239049	20239356	20239049	ID=MS.gene51927.t1.exon3;Parent=MS.gene51927.t1
chr7.1	CDS	20239049	20239356	20239049	ID=cds.MS.gene51927.t1;Parent=MS.gene51927.t1
chr7.1	exon	20240137	20240381	20240137	ID=MS.gene51927.t1.exon4;Parent=MS.gene51927.t1
chr7.1	CDS	20240137	20240381	20240137	ID=cds.MS.gene51927.t1;Parent=MS.gene51927.t1
chr7.1	exon	20240681	20241183	20240681	ID=MS.gene51927.t1.exon5;Parent=MS.gene51927.t1
chr7.1	CDS	20240681	20241183	20240681	ID=cds.MS.gene51927.t1;Parent=MS.gene51927.t1

Gene Sequence

>MS.gene51927

ATGGCTTCGGCTACTTTCTCTGTAGCCAACCCAGCTCTTAAGGTTCAACATATTATTATTAATGCAGTGTATCTTTATAAACTCATATATTAACTAGTGGTACCATGTTGTAGCAATAAAGCTAGGGCTAATTGCTTTATACTAATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTCTTTGGTTTATTATATAGGTAAATGGGAAAGGCTTTTCCGAATTCTCTGGTCTCCGTAACTCATCAGGATATCTTCCCTTTTCTAGAAAAACTTCAGATGACTTTCATTCTGTCATTTCCTTCCAAACCAATGCAGTAAGTTTTTATCTCCAATGAATGACTTATAATTTTAGTTGTAAAATAAAGTGCTTGATAAAAGTATGTGTATGAATACAAGATATTTTTATAATCAACCAAGTCTAACATGGATTTTTTAATTGCACACTTAATGACTTCTATGGATAATCTATGCTCAACAATATTAATGAATAGCTACAAAATTATGTAACAAATTTATTCTTTCCATTTTACTTATAGAATGAGTCTTTTAGATTCATATATTGGCTCATCTAGTTTTCATATCATATCACATTAGTGTTAGGTCATGTGTTTGCACAAAAAATATCAACTCGAGACGTAGGTGGCCGTTCAATCAAGATCAAAATGTCCAAAAAAATATCGTTTTTTTTAATAATTTTAAAATATCAAACTTGAATATGGATCATCTGATCTTGATAGAACGACCACTTAAGTCCCCGTTGCATGAATGCGGAGAATCCCTGACTACAGGGTAGCCGGATCCCAAAAATACACACTTGATGGTTACCATGAACTGATTAAACAAATTAAGTGACATGTTTTACAATTTTGCATCTATCAATCTTTCTACATGTTTGTACATTTGAAGGTTGGAAGCAGTGGAAGATCCAGGAAAGGTGTTGTAGTGGAAGCAAAAATTAAGGTAGCCATAAACGGATTTGGAAGGATTGGAAGGAACTTCTTGAGATGTTGGCATGGTCGTAAGGACTCGCCTCTTGATGTCATTGCCATCAATGACACCGGAGGTGTAAAGCAAGCCTCTCACCTTCTCAAGTATGATTCTACACTTGGAATCTTTGATGCTGATGTTAAACCTGTTGGCACTGATGGTATCTCTGTTGATGGAAAGGTTATCAAAGTTGTCTCTGACCGTAACCCTGCCAACCTTCCATGGGGGTAAGCTCTTCCTTCATTCATTGATTTTGTTGCAATGGAATTGTGTGGTCTTGTGTGGATTGATAAAACATTTTTAGCTATTTTTGCTTCACATAATGTGAATGTTTTGTAACTAACTAAAATTAGGAAATAAGAAATAGAAATTGTCTATCGTCATGGTATGATACAAGTGATAGATATTCAATTCTATTTGGATAAACAATTTAATTAGGCACTTATAACGGTGTTTATTTTTATTTTTTAACAAATCATATGAGTGTTTGTCTATAAACTATTTGTACAACAAGAGATAAAATAAAGTCAAATTGTTTTCATATAACAGATAAGTTGAGCTATCACGTAGATGTTACACAAATAAGCTGAAAAAAGCTTATAGTCATGTCATAAGTTGTTTCTATGAGCTCTCTCAAACAATCTCGCATATTTTTATTTTAGAGTAGGTAAACTCAAATAAATCAATTCAAATAGACTTTGATAAGATTTGATCTCTAGTCGACCGCATACAGAAAAATATTTGTCGGATTATATTAACCATTTAAATGGATCTCAGTTATCTAATTTGATAGTTTGATGCATGAATGTGTTTGTATGATGCTAGTATTGAAAACTCGTGCAATTATTTATCATTTTCTTGTAGTGATTAGCGATTGAACAATAACAACAGTAAATCGCAGTATCGCATTAGCCTTAGGCATACATTAATATTGTGTATCAACTGTTAATTACTTTATCATTAAGCAGCAATACACATATTTATAAAGATTGTTATTGCTATTGCAGGGAGTTGGGAATAGATTTGGTGATTGAAGGAACTGGAGTGTTTGTGGACAGAGAAGGTGCTGGGAAGCACATTACCGCAGGAGCTAAGAAGGTACTCATCACAGCCCCCGGAAAAGGAGACATCCCAACTTACGTGGTTGGTGTCAATGCTGATGGTTACAGCCACGCTGATGATATCATCAGCAACGCTTCTTGCACCACTAACTGCCTTGCTCCCTTTGTCAAGGTCCTTGATCAGAAATTCGGTAATGTACCTTATCGCCATATTTTCTAACAAATACGTGTATCTTTTTGCTTATAATAAAAACTGGAGAGTGTAGCATAGCATCGTGCATCTAGAATAGTTTATTTGAACTTATTTTAAGATATGTATACAAAATTGTTTATAAAATAACTTCTTATATACTCAGTTTATATTTCATAAACTCCACAACATTAAGTTTATACATAATCTCTAGTATGATAAACTCTTTTTAATTAAACGTTTAATTAAGCTGTTTATAGCATTTATGTATTTCTAACATATTAAGACATTGGATCACAGGTATCATCAAGGGTACCATGACTACCACTCACTCCTACACCGGTGACCAAAGGCTTCTTGATGCTAGCCACCGTGATCTAAGGCGTGCAAGAGCAGCAGCTCTTAACATTGTGCCAACTTCAACCGGAGCAGCAAAGGCAGTGGCCCTTGTCCTCCCATCACTTAAAGGCAAGCTCAACGGTATTGCACTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGACCTCGTTGTTCAAGTCTCAAAGAAGACATTTGCTGAAGAAGTGAATGAGGCTTTCAGAGACAGTGCAGCCAAGGAGCTGAGCGGTATTCTCTCAGTTTGTGATGAGCCACTTGTGTCTGTAGATTTTAGGTGCACTGATGTGTCCTCAACCGTTGATTCGTCATTGACAATGGTCATGGGAGATGACATGGTGAAGGTGATTGCTTGGTATGATAATGAATGGGGTTACTCACAAAGGGTTGTTGATTTGGCTGACATTGTTGCCAATAACTGGAAGTGA

Protein sequence

>MS.gene51927.t1

MASATFSVANPALKVNGKGFSEFSGLRNSSGYLPFSRKTSDDFHSVISFQTNAVGSSGRSRKGVVVEAKIKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWGELGIDLVIEGTGVFVDREGAGKHITAGAKKVLITAPGKGDIPTYVVGVNADGYSHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPSLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNEAFRDSAAKELSGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK