Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045411.t1 | XP_003601587.2 | 95.2 | 913 | 39 | 2 | 1 | 912 | 1 | 909 | 0.00E+00 | 1723.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045411.t1 | Q6YSJ5 | 62.2 | 879 | 309 | 10 | 40 | 912 | 22 | 883 | 0.0e+00 | 1089.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045411.t1 | G7J9J9 | 95.2 | 913 | 39 | 2 | 1 | 912 | 1 | 909 | 0.0e+00 | 1723.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene045411 | MS.gene074399 | PPI |
MS.gene045411 | MS.gene016870 | PPI |
MS.gene045411 | MS.gene016866 | PPI |
MS.gene045411 | MS.gene99383 | PPI |
MS.gene045411 | MS.gene99379 | PPI |
MS.gene70580 | MS.gene045411 | PPI |
MS.gene045411 | MS.gene37822 | PPI |
MS.gene045411 | MS.gene39809 | PPI |
MS.gene045411 | MS.gene022250 | PPI |
MS.gene045411 | MS.gene25906 | PPI |
MS.gene045411 | MS.gene39813 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045411.t1 | MTR_3g083300 | 95.181 | 913 | 39 | 2 | 1 | 912 | 1 | 909 | 0.0 | 1719 |
MS.gene045411.t1 | MTR_5g087870 | 60.271 | 886 | 331 | 7 | 34 | 911 | 75 | 947 | 0.0 | 1078 |
MS.gene045411.t1 | MTR_3g078647 | 58.362 | 879 | 342 | 7 | 40 | 911 | 61 | 922 | 0.0 | 1051 |
MS.gene045411.t1 | MTR_5g087870 | 58.352 | 886 | 326 | 7 | 34 | 911 | 75 | 925 | 0.0 | 1033 |
MS.gene045411.t1 | MTR_6g043180 | 58.182 | 880 | 343 | 8 | 40 | 911 | 40 | 902 | 0.0 | 1022 |
MS.gene045411.t1 | MTR_5g087890 | 58.428 | 878 | 344 | 9 | 34 | 911 | 35 | 891 | 0.0 | 1022 |
MS.gene045411.t1 | MTR_3g010650 | 53.409 | 880 | 379 | 13 | 40 | 912 | 21 | 876 | 0.0 | 924 |
MS.gene045411.t1 | MTR_6g477980 | 36.275 | 918 | 489 | 25 | 42 | 912 | 241 | 1109 | 1.89e-160 | 499 |
MS.gene045411.t1 | MTR_6g477980 | 36.383 | 918 | 488 | 25 | 42 | 912 | 247 | 1115 | 2.18e-160 | 499 |
MS.gene045411.t1 | MTR_1g041345 | 36.039 | 924 | 494 | 30 | 31 | 912 | 111 | 979 | 3.90e-157 | 487 |
MS.gene045411.t1 | MTR_2g059590 | 35.857 | 898 | 501 | 24 | 42 | 912 | 54 | 903 | 7.59e-156 | 481 |
MS.gene045411.t1 | MTR_1g102630 | 35.281 | 924 | 505 | 27 | 31 | 912 | 106 | 978 | 7.45e-155 | 481 |
MS.gene045411.t1 | MTR_4g113200 | 36.071 | 901 | 497 | 26 | 41 | 912 | 26 | 876 | 1.78e-154 | 477 |
MS.gene045411.t1 | MTR_4g056430 | 34.081 | 936 | 542 | 26 | 2 | 912 | 86 | 971 | 5.02e-148 | 462 |
MS.gene045411.t1 | MTR_4g056470 | 33.520 | 895 | 526 | 21 | 42 | 912 | 159 | 1008 | 4.99e-142 | 448 |
MS.gene045411.t1 | MTR_5g042590 | 31.744 | 923 | 530 | 29 | 35 | 912 | 149 | 1016 | 3.99e-121 | 392 |
MS.gene045411.t1 | MTR_2g059790 | 38.240 | 591 | 335 | 12 | 340 | 912 | 16 | 594 | 3.96e-117 | 370 |
MS.gene045411.t1 | MTR_2g059590 | 33.183 | 663 | 388 | 18 | 42 | 687 | 54 | 678 | 3.92e-94 | 312 |
MS.gene045411.t1 | MTR_4g083610 | 30.025 | 796 | 460 | 25 | 112 | 874 | 194 | 925 | 4.32e-84 | 291 |
MS.gene045411.t1 | MTR_2g028910 | 26.958 | 983 | 547 | 38 | 3 | 911 | 143 | 1028 | 1.80e-78 | 276 |
MS.gene045411.t1 | MTR_3g101730 | 32.402 | 179 | 72 | 5 | 639 | 813 | 39 | 172 | 9.28e-18 | 82.4 |
MS.gene045411.t1 | MTR_7g107230 | 43.750 | 96 | 40 | 1 | 479 | 574 | 140 | 221 | 4.84e-16 | 79.3 |
MS.gene045411.t1 | MTR_6g037320 | 47.297 | 74 | 39 | 0 | 594 | 667 | 1 | 74 | 4.99e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene045411.t1 | AT2G32940 | 62.144 | 877 | 309 | 8 | 37 | 912 | 24 | 878 | 0.0 | 1070 |
MS.gene045411.t1 | AT2G27040 | 56.629 | 890 | 361 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1019 |
MS.gene045411.t1 | AT2G27040 | 56.629 | 890 | 361 | 8 | 31 | 912 | 52 | 924 | 0.0 | 1019 |
MS.gene045411.t1 | AT5G21150 | 56.946 | 871 | 353 | 8 | 46 | 912 | 44 | 896 | 0.0 | 1011 |
MS.gene045411.t1 | AT5G21030 | 50.933 | 911 | 374 | 17 | 15 | 912 | 4 | 854 | 0.0 | 875 |
MS.gene045411.t1 | AT5G21030 | 50.933 | 911 | 370 | 18 | 15 | 912 | 4 | 850 | 0.0 | 869 |
MS.gene045411.t1 | AT1G48410 | 36.491 | 929 | 470 | 27 | 42 | 912 | 182 | 1048 | 1.15e-158 | 493 |
MS.gene045411.t1 | AT1G48410 | 36.501 | 926 | 468 | 27 | 46 | 912 | 186 | 1050 | 2.60e-158 | 492 |
MS.gene045411.t1 | AT1G48410 | 36.501 | 926 | 468 | 27 | 46 | 912 | 186 | 1050 | 2.60e-158 | 492 |
MS.gene045411.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.36e-152 | 474 |
MS.gene045411.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.36e-152 | 474 |
MS.gene045411.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.36e-152 | 474 |
MS.gene045411.t1 | AT5G43810 | 35.147 | 919 | 487 | 28 | 42 | 912 | 131 | 988 | 3.36e-152 | 474 |
MS.gene045411.t1 | AT2G27880 | 35.580 | 905 | 484 | 29 | 46 | 912 | 154 | 997 | 2.72e-145 | 456 |
MS.gene045411.t1 | AT1G69440 | 32.230 | 906 | 502 | 27 | 46 | 912 | 158 | 990 | 2.00e-115 | 377 |
MS.gene045411.t1 | AT1G31290 | 30.698 | 860 | 494 | 27 | 52 | 874 | 275 | 1069 | 2.74e-91 | 313 |
MS.gene045411.t1 | AT1G31290 | 30.698 | 860 | 494 | 27 | 52 | 874 | 313 | 1107 | 4.18e-91 | 313 |
MS.gene045411.t1 | AT1G31290 | 30.698 | 860 | 494 | 27 | 52 | 874 | 349 | 1143 | 6.26e-91 | 313 |
MS.gene045411.t1 | AT1G31280 | 29.255 | 899 | 501 | 33 | 23 | 874 | 153 | 963 | 2.48e-90 | 309 |
Find 209 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCAAGAATTCAAAATTTA+TGG | 0.067326 | 3.4:-78421644 | MS.gene045411:CDS |
TCCATTGTTCTTTCCCTTAA+AGG | 0.138733 | 3.4:-78422310 | MS.gene045411:CDS |
CATATGACTCGATCCCTTTA+AGG | 0.150762 | 3.4:+78422296 | None:intergenic |
AATGGACTGCAAGGGTATTT+TGG | 0.214443 | 3.4:+78422327 | None:intergenic |
TTGCTGTCATCTAAACTTAA+TGG | 0.226920 | 3.4:-78420244 | MS.gene045411:CDS |
TTACAGGCTATTGGAAATTC+TGG | 0.231778 | 3.4:-78420973 | MS.gene045411:intron |
GGGAGGATTGTCTCTTAATA+TGG | 0.249429 | 3.4:-78421977 | MS.gene045411:CDS |
AGCCATCAGATATTGGTTAT+TGG | 0.253396 | 3.4:-78420531 | MS.gene045411:CDS |
ACATACATTATACTGGAAAA+AGG | 0.260122 | 3.4:+78422800 | None:intergenic |
TGCACACAACCTTTATTATC+TGG | 0.271589 | 3.4:+78416777 | None:intergenic |
AACCTCATCAATATGTTTAT+AGG | 0.277854 | 3.4:+78416626 | None:intergenic |
CATTAAGATTTACAGGCTAT+TGG | 0.284179 | 3.4:-78420982 | MS.gene045411:intron |
TTGAACTCAAATTTATTATC+TGG | 0.285094 | 3.4:+78422564 | None:intergenic |
AAAATTCCACCTTCCATTAC+TGG | 0.289479 | 3.4:+78420682 | None:intergenic |
TCAGGAGAAAACTGATTAAT+AGG | 0.290755 | 3.4:-78422671 | MS.gene045411:CDS |
TCCTCCTCTAATAAAGTAAA+TGG | 0.290968 | 3.4:+78420319 | None:intergenic |
CAACTCAAATTATTCTCTTC+AGG | 0.295576 | 3.4:-78417570 | MS.gene045411:intron |
CTTTGTAAATTTCAGGGCCT+TGG | 0.317902 | 3.4:-78420091 | MS.gene045411:intron |
TTGCTGGCAATAGAGCATTC+TGG | 0.317928 | 3.4:-78419827 | MS.gene045411:CDS |
GCCATCAGATATTGGTTATT+GGG | 0.320162 | 3.4:-78420530 | MS.gene045411:CDS |
CCATTGTTCTTTCCCTTAAA+GGG | 0.323956 | 3.4:-78422309 | MS.gene045411:CDS |
ACTTCTTAAAATCAATTCTA+AGG | 0.326188 | 3.4:-78419985 | MS.gene045411:intron |
GCCGCATGTGGTATTTCTAT+TGG | 0.327127 | 3.4:-78420928 | MS.gene045411:CDS |
CTTCTACAGCCATCAGATAT+TGG | 0.328425 | 3.4:-78420538 | MS.gene045411:CDS |
AAGAGCTCCCAAAGTTGAAT+TGG | 0.330806 | 3.4:-78415793 | MS.gene045411:CDS |
TCCCTGTGTAAGACGAAAAC+TGG | 0.331692 | 3.4:+78421996 | None:intergenic |
TTTAGCAAAATATTCATATA+CGG | 0.341239 | 3.4:+78421410 | None:intergenic |
CACGTGTTGCTTGATGAAAT+TGG | 0.343499 | 3.4:-78416175 | MS.gene045411:CDS |
TGCTGGCAATAGAGCATTCT+GGG | 0.347508 | 3.4:-78419826 | MS.gene045411:CDS |
CTGACATTCCAATTCAACTT+TGG | 0.348378 | 3.4:+78415785 | None:intergenic |
GAATAGGTTGGGAGAGCTAT+TGG | 0.351022 | 3.4:+78422915 | None:intergenic |
TCCTGATGTGCTGTCTAGTA+TGG | 0.352618 | 3.4:-78422946 | MS.gene045411:CDS |
ATGTAGAAATCGTAATTTCT+TGG | 0.356720 | 3.4:+78416407 | None:intergenic |
CAACTTTGGGAGCTCTTGAA+TGG | 0.361733 | 3.4:+78415799 | None:intergenic |
TGACATTCCAATTCAACTTT+GGG | 0.363509 | 3.4:+78415786 | None:intergenic |
AAAAGGATGATGGTATTATC+AGG | 0.373300 | 3.4:-78419438 | MS.gene045411:intron |
ACTTTCCATGTCTTGATGTT+GGG | 0.375386 | 3.4:-78421356 | MS.gene045411:CDS |
GCTCTATATCTCGAAATTAG+AGG | 0.379869 | 3.4:+78419550 | None:intergenic |
GCCCTCGCGAGGAAAATAAA+AGG | 0.383421 | 3.4:-78422402 | MS.gene045411:CDS |
GATAGGAGAAAATCAATTAC+AGG | 0.385642 | 3.4:+78421834 | None:intergenic |
AGCCTTACAGCAGCTGTTGA+TGG | 0.387959 | 3.4:+78419722 | None:intergenic |
CAAAGTTGAATTGGAATGTC+AGG | 0.396485 | 3.4:-78415784 | MS.gene045411:CDS |
TGGAGGAATAAATTCTTTGC+TGG | 0.397191 | 3.4:-78419843 | MS.gene045411:CDS |
AACTTTGGGAGCTCTTGAAT+GGG | 0.397774 | 3.4:+78415800 | None:intergenic |
TCACTTGACATACATTATAC+TGG | 0.400607 | 3.4:+78422793 | None:intergenic |
GCGGCCATTTACTTTATTAG+AGG | 0.401735 | 3.4:-78420323 | MS.gene045411:CDS |
AGGTTGCAGCTGTGCTCCTC+TGG | 0.405009 | 3.4:+78416018 | None:intergenic |
TACTTTCCATGTCTTGATGT+TGG | 0.405546 | 3.4:-78421357 | MS.gene045411:CDS |
GGGATGTTTCCCTCTGAATC+AGG | 0.405805 | 3.4:+78415821 | None:intergenic |
TCAAGAACTCTTCCTTCAAC+TGG | 0.410088 | 3.4:+78420892 | None:intergenic |
CCATCCCTAAAATCATCGTT+GGG | 0.410555 | 3.4:+78419780 | None:intergenic |
ATATGACTCGATCCCTTTAA+GGG | 0.411344 | 3.4:+78422297 | None:intergenic |
AGCAGCAGTACTGAGAGTTT+TGG | 0.411522 | 3.4:-78422436 | MS.gene045411:intron |
CACTTACAGTTGTTGAATGC+AGG | 0.412851 | 3.4:+78421607 | None:intergenic |
CTGTTGAAAGCAAGGGCATC+AGG | 0.419930 | 3.4:-78422689 | MS.gene045411:CDS |
AGGCGGAGTAGAAGGAGTTC+GGG | 0.420984 | 3.4:-78422028 | MS.gene045411:CDS |
TGGTGAATCTCAATTTCAAC+AGG | 0.422456 | 3.4:-78416819 | MS.gene045411:CDS |
TGCCACAATTACAGTGAACT+TGG | 0.423102 | 3.4:+78416587 | None:intergenic |
TTATGTTGGATTTAGGTTGT+TGG | 0.423726 | 3.4:-78419586 | MS.gene045411:intron |
CAAGTTCAGAAGAGTATGTT+TGG | 0.425625 | 3.4:+78422643 | None:intergenic |
CGTTGGGGTATCTTTAATCA+AGG | 0.429944 | 3.4:+78419796 | None:intergenic |
TAGCTTGAAACAGCTTTGTA+TGG | 0.436156 | 3.4:+78416553 | None:intergenic |
AGCACAGCTGCAACCTCAAT+TGG | 0.437891 | 3.4:-78416011 | MS.gene045411:intron |
CAGCCTACTGATAATAGAAT+AGG | 0.438878 | 3.4:+78422899 | None:intergenic |
CAAACATACTCTTCTGAACT+TGG | 0.446873 | 3.4:-78422642 | MS.gene045411:CDS |
AGGAAGTGTCTGAGTGATGT+TGG | 0.447585 | 3.4:-78420065 | MS.gene045411:CDS |
AGAGCTTAACCAGATAATAA+AGG | 0.448697 | 3.4:-78416786 | MS.gene045411:intron |
GCATGGTGGGCATAGTATAT+AGG | 0.450067 | 3.4:+78415902 | None:intergenic |
TGAGGCAGCGAGCAGCTAAC+AGG | 0.452726 | 3.4:-78422234 | MS.gene045411:intron |
AGAAAATCAATTACAGGTCC+AGG | 0.458109 | 3.4:+78421840 | None:intergenic |
GGAAGTGTCTGAGTGATGTT+GGG | 0.461376 | 3.4:-78420064 | MS.gene045411:CDS |
TACTGATAATAGAATAGGTT+GGG | 0.462123 | 3.4:+78422904 | None:intergenic |
AGGTTGTTGGATCTCGATGC+TGG | 0.463185 | 3.4:-78419573 | MS.gene045411:CDS |
GAGGCGGAGTAGAAGGAGTT+CGG | 0.465739 | 3.4:-78422029 | MS.gene045411:CDS |
TTCTGATGGCGTACCAATTG+AGG | 0.467308 | 3.4:+78415998 | None:intergenic |
GAATAATTTGAGTTGGTTTG+CGG | 0.468297 | 3.4:+78417578 | None:intergenic |
TCGAGGAATTTCATCGATGT+TGG | 0.470697 | 3.4:-78422051 | MS.gene045411:CDS |
GAATCAATCATCTCCACCTT+AGG | 0.471437 | 3.4:+78419508 | None:intergenic |
AAATTCCACCTTCCATTACT+GGG | 0.473459 | 3.4:+78420683 | None:intergenic |
GGGAACCTCGTTATATTGAC+TGG | 0.475105 | 3.4:-78421797 | MS.gene045411:CDS |
AGGAATTTCATCGATGTTGG+AGG | 0.476725 | 3.4:-78422048 | MS.gene045411:CDS |
TAATTCTCAGGATGCATTGA+GGG | 0.477606 | 3.4:-78422272 | MS.gene045411:CDS |
TTTCCCTCTGAATCAGGACT+TGG | 0.478734 | 3.4:+78415827 | None:intergenic |
TTGATGTTGGGAAGCCAAAT+CGG | 0.480224 | 3.4:-78421344 | MS.gene045411:CDS |
CATTTGAGCTGCAGCATGGT+GGG | 0.481186 | 3.4:+78415889 | None:intergenic |
TTCTACATGTGTGCTCATGC+TGG | 0.485331 | 3.4:-78416392 | MS.gene045411:CDS |
AGGCTGAGTGTCGGGACCAC+AGG | 0.487528 | 3.4:-78422882 | MS.gene045411:CDS |
GATGTTGGAGGCGGAGTAGA+AGG | 0.490244 | 3.4:-78422036 | MS.gene045411:CDS |
TCCACAGCTTCTTCAAAGTC+AGG | 0.492479 | 3.4:+78422993 | None:intergenic |
AAATTTCAGGGCCTTGGAAA+AGG | 0.493150 | 3.4:-78420085 | MS.gene045411:intron |
TTAGGGATGGATGTCTCTCA+TGG | 0.493402 | 3.4:-78419767 | MS.gene045411:CDS |
CGAGTCATATGCTAATTCTC+AGG | 0.493752 | 3.4:-78422284 | MS.gene045411:CDS |
GATGTCTCTCATGGTTCCCC+TGG | 0.494710 | 3.4:-78419758 | MS.gene045411:CDS |
TCCATACTAGACAGCACATC+AGG | 0.495360 | 3.4:+78422945 | None:intergenic |
CTAGATTTCTATAGTTCAAG+TGG | 0.497260 | 3.4:-78417604 | MS.gene045411:CDS |
GAAGACTGCTTCCCCAGTAA+TGG | 0.502847 | 3.4:-78420695 | MS.gene045411:CDS |
CTGAAGAGAATAATTTGAGT+TGG | 0.507739 | 3.4:+78417571 | None:intergenic |
TCAAATTTATTATCTGGAAG+AGG | 0.508444 | 3.4:+78422570 | None:intergenic |
GCTGTTTCAAGCTAATGCTC+TGG | 0.511577 | 3.4:-78416544 | MS.gene045411:CDS |
TCCATCCCTAAAATCATCGT+TGG | 0.515662 | 3.4:+78419779 | None:intergenic |
ACTAAAGATGCTCTTTGCAC+AGG | 0.518323 | 3.4:+78421117 | None:intergenic |
ATATTCTTATTACAGCTTGG+AGG | 0.519143 | 3.4:-78419860 | MS.gene045411:intron |
TAAAAGAACTGTTGAAAGCA+AGG | 0.519488 | 3.4:-78422697 | MS.gene045411:CDS |
AACGAGGTTCCCTCACACTC+TGG | 0.519744 | 3.4:+78421808 | None:intergenic |
GGAGGATTGTCTCTTAATAT+GGG | 0.521120 | 3.4:-78421976 | MS.gene045411:intron |
AAGCAATTCACTCCAGTTGA+AGG | 0.521724 | 3.4:-78420904 | MS.gene045411:CDS |
TTATCAGTAGGCTGAGTGTC+GGG | 0.522170 | 3.4:-78422890 | MS.gene045411:CDS |
GCCATTTACTTTATTAGAGG+AGG | 0.522401 | 3.4:-78420320 | MS.gene045411:CDS |
GAAAATTTAACCCTGTTGCA+AGG | 0.523968 | 3.4:-78420285 | MS.gene045411:CDS |
GGAGGTGATGGAGGTAAAGC+TGG | 0.527652 | 3.4:+78422966 | None:intergenic |
CGTGGAAAGAGGGTGTCTCT+TGG | 0.527878 | 3.4:-78422100 | MS.gene045411:intron |
ACACAAAGAATCAACTTTGG+TGG | 0.530353 | 3.4:+78420220 | None:intergenic |
ATGTGGAATGAGCAAGGGAA+TGG | 0.530588 | 3.4:-78420449 | MS.gene045411:intron |
CCCTCACACTCTGGTTGGAT+AGG | 0.531323 | 3.4:+78421817 | None:intergenic |
AAAATTTAACCCTGTTGCAA+GGG | 0.534798 | 3.4:-78420284 | MS.gene045411:CDS |
TTCTTGTTCAGGGATGGAGT+TGG | 0.535856 | 3.4:-78416839 | MS.gene045411:intron |
ATGGAATATCTGATCGGCCA+GGG | 0.537320 | 3.4:+78419741 | None:intergenic |
TGTAAGATCACAGTCTCCTA+AGG | 0.538809 | 3.4:-78419524 | MS.gene045411:CDS |
GCATCATTCATCTTATCCAC+AGG | 0.540020 | 3.4:+78419475 | None:intergenic |
AATTTCATCGATGTTGGAGG+CGG | 0.540242 | 3.4:-78422045 | MS.gene045411:CDS |
TCCCAAGTTCACTGTAATTG+TGG | 0.549617 | 3.4:-78416589 | MS.gene045411:CDS |
GGAAAGAACAATGGACTGCA+AGG | 0.550385 | 3.4:+78422318 | None:intergenic |
ATAATGCCTTTGTATACCGC+TGG | 0.550641 | 3.4:+78421142 | None:intergenic |
ACTTACAGTTGTTGAATGCA+GGG | 0.551345 | 3.4:+78421608 | None:intergenic |
ACATGGAAAGTAAGCAGAAG+AGG | 0.552059 | 3.4:+78421368 | None:intergenic |
GATGGAATATCTGATCGGCC+AGG | 0.555026 | 3.4:+78419740 | None:intergenic |
AAAGAGGGTGTCTCTTGGTA+AGG | 0.555122 | 3.4:-78422095 | MS.gene045411:intron |
GACAGCACATCAGGAGGTGA+TGG | 0.564571 | 3.4:+78422954 | None:intergenic |
TCCTATCCAACCAGAGTGTG+AGG | 0.566604 | 3.4:-78421818 | MS.gene045411:CDS |
ATCTCCAAGTCCTGATTCAG+AGG | 0.568425 | 3.4:-78415831 | MS.gene045411:CDS |
CTAATTCTCAGGATGCATTG+AGG | 0.568737 | 3.4:-78422273 | MS.gene045411:CDS |
AAGACACAAAGAATCAACTT+TGG | 0.569909 | 3.4:+78420217 | None:intergenic |
TCATTTGAGCTGCAGCATGG+TGG | 0.570376 | 3.4:+78415888 | None:intergenic |
GGCAAAAGCTTTGCGTACGA+TGG | 0.570982 | 3.4:-78422618 | MS.gene045411:CDS |
CAACCTATTCTATTATCAGT+AGG | 0.570991 | 3.4:-78422902 | MS.gene045411:CDS |
GAAATTGGATTCTCACCAGA+TGG | 0.572088 | 3.4:-78416160 | MS.gene045411:CDS |
TCGTTATATTGACTGGGCAA+AGG | 0.573639 | 3.4:-78421790 | MS.gene045411:intron |
GCCTTTGTATACCGCTGGAG+GGG | 0.575742 | 3.4:+78421147 | None:intergenic |
TGCCTTTGTATACCGCTGGA+GGG | 0.578738 | 3.4:+78421146 | None:intergenic |
AAAGGTTGCATCTGTAGCAT+CGG | 0.579610 | 3.4:+78422818 | None:intergenic |
TTCTTTGTGTCTTGCCAGAG+AGG | 0.579962 | 3.4:-78420207 | MS.gene045411:CDS |
GATTAGATGTGGAATGAGCA+AGG | 0.580659 | 3.4:-78420455 | MS.gene045411:CDS |
TGATTCTCTATTCAAGCCTG+TGG | 0.582586 | 3.4:-78419491 | MS.gene045411:CDS |
AGCTGCTCGCTGCCTCAGTA+CGG | 0.583868 | 3.4:+78422240 | None:intergenic |
AAAAGAACTGTTGAAAGCAA+GGG | 0.585910 | 3.4:-78422696 | MS.gene045411:CDS |
ACATACTCTTCTGAACTTGG+TGG | 0.585999 | 3.4:-78422639 | MS.gene045411:CDS |
GCTCTGGAAAACGTTCCTCC+TGG | 0.588624 | 3.4:-78416528 | MS.gene045411:intron |
TTCTCATTTGAGCTGCAGCA+TGG | 0.590822 | 3.4:+78415885 | None:intergenic |
TATTGATCAGTGATCTTGAG+AGG | 0.590847 | 3.4:+78420020 | None:intergenic |
TTTGAGACACAGTTGAAGGT+AGG | 0.591550 | 3.4:-78420725 | MS.gene045411:intron |
ACCTGACTTTGAAGAAGCTG+TGG | 0.593647 | 3.4:-78422994 | MS.gene045411:CDS |
CCCTTTAAGGGAAAGAACAA+TGG | 0.596031 | 3.4:+78422309 | None:intergenic |
GTTCACTTGTTCCCCTCCAG+CGG | 0.598429 | 3.4:-78421158 | MS.gene045411:CDS |
ACTTTGGGAGCTCTTGAATG+GGG | 0.599703 | 3.4:+78415801 | None:intergenic |
GCCCAATAACCAATATCTGA+TGG | 0.600894 | 3.4:+78420529 | None:intergenic |
CTACTGATAATAGAATAGGT+TGG | 0.603547 | 3.4:+78422903 | None:intergenic |
AGCAACACGTGATAATGCAC+AGG | 0.603754 | 3.4:+78416187 | None:intergenic |
ATTGATCAGTGATCTTGAGA+GGG | 0.604848 | 3.4:+78420021 | None:intergenic |
ACAAGGGAGCTGATTAGATG+TGG | 0.605031 | 3.4:-78420466 | MS.gene045411:CDS |
ATTATCAGTAGGCTGAGTGT+CGG | 0.606927 | 3.4:-78422891 | MS.gene045411:CDS |
GTTGGGGTATCTTTAATCAA+GGG | 0.607083 | 3.4:+78419797 | None:intergenic |
TTCATATACGGTAATATCCA+CGG | 0.608023 | 3.4:+78421422 | None:intergenic |
AGGTTCCCTCACACTCTGGT+TGG | 0.610864 | 3.4:+78421812 | None:intergenic |
ACAACGACGATCATAAAACC+TGG | 0.611593 | 3.4:-78421858 | MS.gene045411:CDS |
AGCACATCAGGAGGTGATGG+AGG | 0.613682 | 3.4:+78422957 | None:intergenic |
GCCAATAGAAATACCACATG+CGG | 0.613882 | 3.4:+78420927 | None:intergenic |
ATTAAGTTTAGATGACAGCA+AGG | 0.615537 | 3.4:+78420246 | None:intergenic |
ATATATAATAGGGAACGTCT+AGG | 0.616244 | 3.4:-78416210 | MS.gene045411:intron |
AAAGTTGAATTGGAATGTCA+GGG | 0.617065 | 3.4:-78415783 | MS.gene045411:CDS |
AAGATCACAGTCTCCTAAGG+TGG | 0.617635 | 3.4:-78419521 | MS.gene045411:CDS |
ATGCCTTTGTATACCGCTGG+AGG | 0.619085 | 3.4:+78421145 | None:intergenic |
GGAACCTCGTTATATTGACT+GGG | 0.619345 | 3.4:-78421796 | MS.gene045411:CDS |
GTGGATAAGATGAATGATGC+TGG | 0.619986 | 3.4:-78419472 | MS.gene045411:CDS |
GTGATACTAGTTACATAACA+AGG | 0.620176 | 3.4:-78420483 | MS.gene045411:CDS |
TTCTTGAAGAAACATTTGCA+AGG | 0.623575 | 3.4:-78422536 | MS.gene045411:intron |
GGCCTATAAACATATTGATG+AGG | 0.628880 | 3.4:-78416628 | MS.gene045411:CDS |
GAAAGAACTTTGTACACAGT+GGG | 0.633260 | 3.4:-78422594 | MS.gene045411:CDS |
GCCACAATTACAGTGAACTT+GGG | 0.633960 | 3.4:+78416588 | None:intergenic |
GCTTCCCCAGTAATGGAAGG+TGG | 0.637271 | 3.4:-78420688 | MS.gene045411:CDS |
AGAAAGAACTTTGTACACAG+TGG | 0.637549 | 3.4:-78422595 | MS.gene045411:CDS |
TGTGCTGTCTAGTATGGAAG+CGG | 0.638258 | 3.4:-78422940 | MS.gene045411:CDS |
GGCTTCCCAACATCAAGACA+TGG | 0.639701 | 3.4:+78421351 | None:intergenic |
AATTCCACCTTCCATTACTG+GGG | 0.639980 | 3.4:+78420684 | None:intergenic |
CCTATCCAACCAGAGTGTGA+GGG | 0.641143 | 3.4:-78421817 | MS.gene045411:CDS |
AAGAGGTCAGCTCAATGCCA+CGG | 0.643931 | 3.4:+78421385 | None:intergenic |
TCCCCTCCAGCGGTATACAA+AGG | 0.644422 | 3.4:-78421148 | MS.gene045411:CDS |
GAAAGAACAATGGACTGCAA+GGG | 0.645951 | 3.4:+78422319 | None:intergenic |
ACTGCTTCCCCAGTAATGGA+AGG | 0.646246 | 3.4:-78420691 | MS.gene045411:CDS |
TGGAATATCTGATCGGCCAG+GGG | 0.648815 | 3.4:+78419742 | None:intergenic |
TGCTAATGGAAGCCCTCGCG+AGG | 0.649571 | 3.4:-78422413 | MS.gene045411:CDS |
CAATAACTCGGAGCAGACCG+TGG | 0.649994 | 3.4:-78421439 | MS.gene045411:CDS |
ATTAGATGTGGAATGAGCAA+GGG | 0.654490 | 3.4:-78420454 | MS.gene045411:CDS |
CTGTTGATGGAATATCTGAT+CGG | 0.655109 | 3.4:+78419735 | None:intergenic |
GATGCTGTTCTTGCCGCATG+TGG | 0.655400 | 3.4:-78420940 | MS.gene045411:CDS |
TCTCCAAGTCCTGATTCAGA+GGG | 0.656047 | 3.4:-78415830 | MS.gene045411:CDS |
AGAATTCAACAAACCTCCAG+AGG | 0.657878 | 3.4:+78421309 | None:intergenic |
GGTGATGGAGGTAAAGCTGG+TGG | 0.663403 | 3.4:+78422969 | None:intergenic |
CATCCCTAAAATCATCGTTG+GGG | 0.665242 | 3.4:+78419781 | None:intergenic |
AAATGGAGAAGACAATAACT+CGG | 0.665330 | 3.4:-78421451 | MS.gene045411:CDS |
AAGAGTTCTTGAGACACCAA+AGG | 0.666572 | 3.4:-78420881 | MS.gene045411:intron |
TTGATCAGTGATCTTGAGAG+GGG | 0.679194 | 3.4:+78420022 | None:intergenic |
AGTATTTACAGAATATTGAG+CGG | 0.680400 | 3.4:-78420342 | MS.gene045411:intron |
TGATACTAGTTACATAACAA+GGG | 0.689799 | 3.4:-78420482 | MS.gene045411:CDS |
ATACTAGACAGCACATCAGG+AGG | 0.702332 | 3.4:+78422948 | None:intergenic |
GAAGTGTCTGAGTGATGTTG+GGG | 0.703380 | 3.4:-78420063 | MS.gene045411:CDS |
GGGTTCTTGATACCGTACTG+AGG | 0.710755 | 3.4:-78422252 | MS.gene045411:CDS |
TCAGTCAAAGACATTCACAG+TGG | 0.721924 | 3.4:-78422365 | MS.gene045411:CDS |
GGCGGAGTAGAAGGAGTTCG+GGG | 0.726067 | 3.4:-78422027 | MS.gene045411:CDS |
TTTGCCCAGTCAATATAACG+AGG | 0.751855 | 3.4:+78421792 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 78415763 | 78423027 | 78415763 | ID=MS.gene045411 |
chr3.4 | mRNA | 78415763 | 78423027 | 78415763 | ID=MS.gene045411.t1;Parent=MS.gene045411 |
chr3.4 | exon | 78422806 | 78423027 | 78422806 | ID=MS.gene045411.t1.exon1;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78422806 | 78423027 | 78422806 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78422537 | 78422739 | 78422537 | ID=MS.gene045411.t1.exon2;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78422537 | 78422739 | 78422537 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78422235 | 78422453 | 78422235 | ID=MS.gene045411.t1.exon3;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78422235 | 78422453 | 78422235 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78421977 | 78422113 | 78421977 | ID=MS.gene045411.t1.exon4;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78421977 | 78422113 | 78421977 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78421791 | 78421888 | 78421791 | ID=MS.gene045411.t1.exon5;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78421791 | 78421888 | 78421791 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78421614 | 78421711 | 78421614 | ID=MS.gene045411.t1.exon6;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78421614 | 78421711 | 78421614 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78421323 | 78421491 | 78421323 | ID=MS.gene045411.t1.exon7;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78421323 | 78421491 | 78421323 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78421068 | 78421184 | 78421068 | ID=MS.gene045411.t1.exon8;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78421068 | 78421184 | 78421068 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78420882 | 78420989 | 78420882 | ID=MS.gene045411.t1.exon9;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78420882 | 78420989 | 78420882 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78420673 | 78420735 | 78420673 | ID=MS.gene045411.t1.exon10;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78420673 | 78420735 | 78420673 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78420450 | 78420563 | 78420450 | ID=MS.gene045411.t1.exon11;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78420450 | 78420563 | 78420450 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78420188 | 78420353 | 78420188 | ID=MS.gene045411.t1.exon12;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78420188 | 78420353 | 78420188 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78419986 | 78420098 | 78419986 | ID=MS.gene045411.t1.exon13;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78419986 | 78420098 | 78419986 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78419730 | 78419867 | 78419730 | ID=MS.gene045411.t1.exon14;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78419730 | 78419867 | 78419730 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78419439 | 78419593 | 78419439 | ID=MS.gene045411.t1.exon15;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78419439 | 78419593 | 78419439 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78417571 | 78417636 | 78417571 | ID=MS.gene045411.t1.exon16;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78417571 | 78417636 | 78417571 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78416787 | 78416850 | 78416787 | ID=MS.gene045411.t1.exon17;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78416787 | 78416850 | 78416787 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78416529 | 78416649 | 78416529 | ID=MS.gene045411.t1.exon18;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78416529 | 78416649 | 78416529 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78416385 | 78416458 | 78416385 | ID=MS.gene045411.t1.exon19;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78416385 | 78416458 | 78416385 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78416127 | 78416221 | 78416127 | ID=MS.gene045411.t1.exon20;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78416127 | 78416221 | 78416127 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78416012 | 78416043 | 78416012 | ID=MS.gene045411.t1.exon21;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78416012 | 78416043 | 78416012 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
chr3.4 | exon | 78415763 | 78415929 | 78415763 | ID=MS.gene045411.t1.exon22;Parent=MS.gene045411.t1 |
chr3.4 | CDS | 78415763 | 78415929 | 78415763 | ID=cds.MS.gene045411.t1;Parent=MS.gene045411.t1 |
Gene Sequence |
Protein sequence |