Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04574.t1 | XP_013460157.1 | 96.9 | 318 | 9 | 1 | 1 | 317 | 5 | 322 | 1.90E-174 | 621.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04574.t1 | Q8S9H7 | 54.3 | 328 | 118 | 12 | 1 | 317 | 1 | 307 | 2.0e-79 | 297.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04574.t1 | A0A072UYJ1 | 96.9 | 318 | 9 | 1 | 1 | 317 | 5 | 322 | 1.4e-174 | 621.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04574.t1 | TF | MYB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060469 | MS.gene04574 | PPI |
| MS.gene036893 | MS.gene04574 | PPI |
| MS.gene038745 | MS.gene04574 | PPI |
| MS.gene060569 | MS.gene04574 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04574.t1 | MTR_3g462790 | 98.742 | 318 | 3 | 1 | 1 | 317 | 5 | 322 | 0.0 | 658 |
| MS.gene04574.t1 | MTR_5g069710 | 66.667 | 324 | 80 | 8 | 1 | 317 | 5 | 307 | 1.45e-146 | 415 |
| MS.gene04574.t1 | MTR_7g067080 | 53.560 | 323 | 116 | 11 | 1 | 311 | 11 | 311 | 2.63e-103 | 305 |
| MS.gene04574.t1 | MTR_5g081860 | 64.796 | 196 | 56 | 4 | 23 | 216 | 16 | 200 | 4.59e-82 | 249 |
| MS.gene04574.t1 | MTR_1g111830 | 45.122 | 246 | 110 | 7 | 37 | 280 | 22 | 244 | 7.95e-59 | 189 |
| MS.gene04574.t1 | MTR_4g111975 | 47.368 | 209 | 74 | 5 | 39 | 216 | 8 | 211 | 3.09e-52 | 174 |
| MS.gene04574.t1 | MTR_8g063600 | 46.809 | 188 | 90 | 3 | 31 | 216 | 2 | 181 | 3.06e-51 | 171 |
| MS.gene04574.t1 | MTR_8g063870 | 40.984 | 183 | 86 | 3 | 36 | 216 | 5 | 167 | 1.04e-40 | 143 |
| MS.gene04574.t1 | MTR_2g100930 | 48.322 | 149 | 59 | 5 | 138 | 269 | 104 | 251 | 5.28e-33 | 125 |
| MS.gene04574.t1 | MTR_4g100630 | 60.000 | 100 | 38 | 1 | 117 | 216 | 71 | 168 | 4.35e-32 | 122 |
| MS.gene04574.t1 | MTR_6g092540 | 73.611 | 72 | 19 | 0 | 137 | 208 | 91 | 162 | 3.46e-31 | 119 |
| MS.gene04574.t1 | MTR_4g015130 | 76.119 | 67 | 16 | 0 | 153 | 219 | 3 | 69 | 1.65e-30 | 110 |
| MS.gene04574.t1 | MTR_8g101650 | 70.270 | 74 | 21 | 1 | 135 | 208 | 97 | 169 | 2.67e-30 | 116 |
| MS.gene04574.t1 | MTR_5g037080 | 68.966 | 87 | 25 | 1 | 130 | 216 | 91 | 175 | 3.77e-30 | 116 |
| MS.gene04574.t1 | MTR_4g107230 | 61.702 | 94 | 32 | 1 | 131 | 224 | 72 | 161 | 1.10e-28 | 112 |
| MS.gene04574.t1 | MTR_5g088010 | 50.980 | 102 | 44 | 3 | 113 | 211 | 32 | 130 | 8.19e-25 | 100 |
| MS.gene04574.t1 | MTR_1g033600 | 34.286 | 140 | 72 | 2 | 31 | 157 | 4 | 136 | 5.16e-24 | 95.5 |
| MS.gene04574.t1 | MTR_0036s0260 | 64.179 | 67 | 24 | 0 | 143 | 209 | 28 | 94 | 9.11e-24 | 97.1 |
| MS.gene04574.t1 | MTR_1g033620 | 79.310 | 58 | 12 | 0 | 159 | 216 | 21 | 78 | 1.08e-23 | 97.8 |
| MS.gene04574.t1 | MTR_3g104370 | 58.025 | 81 | 27 | 2 | 140 | 213 | 88 | 168 | 1.93e-23 | 96.7 |
| MS.gene04574.t1 | MTR_2g090305 | 64.179 | 67 | 24 | 0 | 143 | 209 | 28 | 94 | 5.02e-23 | 94.4 |
| MS.gene04574.t1 | MTR_5g027570 | 41.722 | 151 | 53 | 6 | 78 | 211 | 29 | 161 | 5.05e-23 | 95.5 |
| MS.gene04574.t1 | MTR_5g075760 | 37.714 | 175 | 84 | 7 | 31 | 199 | 5 | 160 | 9.80e-23 | 94.4 |
| MS.gene04574.t1 | MTR_5g088060 | 65.714 | 70 | 20 | 2 | 145 | 211 | 274 | 342 | 1.65e-22 | 97.8 |
| MS.gene04574.t1 | MTR_5g488160 | 65.714 | 70 | 20 | 2 | 145 | 211 | 274 | 342 | 1.65e-22 | 97.8 |
| MS.gene04574.t1 | MTR_5g075790 | 35.882 | 170 | 93 | 5 | 31 | 199 | 14 | 168 | 3.11e-22 | 93.2 |
| MS.gene04574.t1 | MTR_5g027550 | 60.526 | 76 | 27 | 1 | 139 | 211 | 73 | 148 | 2.69e-20 | 88.2 |
| MS.gene04574.t1 | MTR_5g020170 | 50.000 | 68 | 34 | 0 | 34 | 101 | 14 | 81 | 1.05e-19 | 82.8 |
| MS.gene04574.t1 | MTR_3g116720 | 57.576 | 66 | 28 | 0 | 39 | 104 | 16 | 81 | 1.48e-19 | 82.0 |
| MS.gene04574.t1 | MTR_1g022290 | 52.113 | 71 | 34 | 0 | 36 | 106 | 4 | 74 | 1.65e-19 | 82.0 |
| MS.gene04574.t1 | MTR_8g077360 | 54.412 | 68 | 30 | 1 | 36 | 103 | 2 | 68 | 9.43e-19 | 79.3 |
| MS.gene04574.t1 | MTR_8g077380 | 54.412 | 68 | 30 | 1 | 36 | 103 | 2 | 68 | 1.01e-18 | 79.3 |
| MS.gene04574.t1 | MTR_8g077390 | 54.412 | 68 | 30 | 1 | 36 | 103 | 2 | 68 | 1.01e-18 | 79.3 |
| MS.gene04574.t1 | MTR_1g048660 | 56.250 | 64 | 28 | 0 | 144 | 207 | 13 | 76 | 1.06e-18 | 80.1 |
| MS.gene04574.t1 | MTR_3g111880 | 53.731 | 67 | 31 | 0 | 36 | 102 | 4 | 70 | 1.36e-17 | 77.0 |
| MS.gene04574.t1 | MTR_6g004250 | 47.222 | 72 | 38 | 0 | 36 | 107 | 7 | 78 | 4.07e-16 | 72.4 |
| MS.gene04574.t1 | MTR_5g020540 | 55.738 | 61 | 26 | 1 | 39 | 99 | 4 | 63 | 1.68e-15 | 70.5 |
| MS.gene04574.t1 | MTR_8g077420 | 50.000 | 68 | 33 | 1 | 39 | 106 | 5 | 71 | 3.19e-15 | 69.7 |
| MS.gene04574.t1 | MTR_3g013440 | 50.704 | 71 | 34 | 1 | 32 | 101 | 3 | 73 | 1.42e-14 | 68.6 |
| MS.gene04574.t1 | MTR_3g070110 | 50.667 | 75 | 30 | 1 | 145 | 212 | 97 | 171 | 3.41e-14 | 70.9 |
| MS.gene04574.t1 | MTR_7g089210 | 55.932 | 59 | 26 | 0 | 43 | 101 | 16 | 74 | 9.77e-14 | 66.2 |
| MS.gene04574.t1 | MTR_1g083180 | 52.113 | 71 | 29 | 2 | 145 | 211 | 63 | 132 | 1.98e-13 | 68.2 |
| MS.gene04574.t1 | MTR_6g043480 | 36.458 | 96 | 52 | 3 | 100 | 189 | 61 | 153 | 8.17e-13 | 67.4 |
| MS.gene04574.t1 | MTR_8g072990 | 43.056 | 72 | 36 | 2 | 140 | 207 | 97 | 167 | 1.04e-11 | 64.3 |
| MS.gene04574.t1 | MTR_6g043490 | 53.191 | 47 | 22 | 0 | 143 | 189 | 107 | 153 | 1.67e-11 | 63.5 |
| MS.gene04574.t1 | MTR_3g111920 | 44.444 | 63 | 35 | 0 | 39 | 101 | 3 | 65 | 1.73e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04574.t1 | AT5G58900 | 70.854 | 199 | 50 | 4 | 23 | 214 | 15 | 212 | 1.20e-97 | 290 |
| MS.gene04574.t1 | AT2G38090 | 61.712 | 222 | 59 | 4 | 1 | 212 | 5 | 210 | 3.67e-95 | 284 |
| MS.gene04574.t1 | AT3G11280 | 54.812 | 239 | 84 | 5 | 39 | 265 | 33 | 259 | 1.04e-79 | 243 |
| MS.gene04574.t1 | AT3G11280 | 54.812 | 239 | 84 | 5 | 39 | 265 | 33 | 259 | 1.04e-79 | 243 |
| MS.gene04574.t1 | AT5G05790 | 64.398 | 191 | 60 | 4 | 35 | 223 | 27 | 211 | 6.09e-79 | 242 |
| MS.gene04574.t1 | AT5G05790 | 64.398 | 191 | 60 | 4 | 35 | 223 | 27 | 211 | 6.09e-79 | 242 |
| MS.gene04574.t1 | AT5G01200 | 58.252 | 206 | 61 | 7 | 23 | 212 | 19 | 215 | 9.12e-72 | 223 |
| MS.gene04574.t1 | AT5G08520 | 51.031 | 194 | 77 | 3 | 33 | 216 | 6 | 191 | 7.40e-59 | 191 |
| MS.gene04574.t1 | AT1G49010 | 47.959 | 196 | 78 | 3 | 39 | 211 | 8 | 202 | 2.09e-51 | 172 |
| MS.gene04574.t1 | AT5G04760 | 48.876 | 178 | 80 | 3 | 36 | 213 | 3 | 169 | 9.46e-50 | 165 |
| MS.gene04574.t1 | AT5G23650 | 38.340 | 253 | 121 | 7 | 33 | 274 | 7 | 235 | 1.53e-42 | 150 |
| MS.gene04574.t1 | AT5G47390 | 63.529 | 85 | 31 | 0 | 131 | 215 | 84 | 168 | 1.84e-31 | 121 |
| MS.gene04574.t1 | AT3G10580 | 35.874 | 223 | 109 | 8 | 39 | 249 | 8 | 208 | 3.98e-31 | 117 |
| MS.gene04574.t1 | AT3G10580 | 35.874 | 223 | 109 | 8 | 39 | 249 | 8 | 208 | 5.84e-31 | 118 |
| MS.gene04574.t1 | AT4G09450 | 40.351 | 171 | 82 | 3 | 38 | 208 | 6 | 156 | 1.26e-29 | 112 |
| MS.gene04574.t1 | AT5G61620 | 54.206 | 107 | 45 | 1 | 113 | 219 | 82 | 184 | 1.22e-28 | 112 |
| MS.gene04574.t1 | AT5G56840 | 57.609 | 92 | 36 | 2 | 129 | 219 | 79 | 168 | 9.14e-28 | 108 |
| MS.gene04574.t1 | AT3G16350 | 66.667 | 87 | 27 | 1 | 138 | 224 | 132 | 216 | 1.42e-27 | 111 |
| MS.gene04574.t1 | AT1G70000 | 68.354 | 79 | 23 | 1 | 130 | 208 | 87 | 163 | 2.85e-27 | 107 |
| MS.gene04574.t1 | AT1G70000 | 68.354 | 79 | 23 | 1 | 130 | 208 | 87 | 163 | 2.85e-27 | 107 |
| MS.gene04574.t1 | AT1G74840 | 57.692 | 104 | 42 | 1 | 138 | 239 | 91 | 194 | 5.49e-26 | 103 |
| MS.gene04574.t1 | AT1G74840 | 57.692 | 104 | 42 | 1 | 138 | 239 | 91 | 194 | 7.64e-26 | 103 |
| MS.gene04574.t1 | AT1G19000 | 62.791 | 86 | 31 | 1 | 139 | 223 | 98 | 183 | 1.96e-25 | 103 |
| MS.gene04574.t1 | AT1G19000 | 62.791 | 86 | 31 | 1 | 139 | 223 | 98 | 183 | 1.96e-25 | 103 |
| MS.gene04574.t1 | AT1G75250 | 53.846 | 78 | 36 | 0 | 29 | 106 | 2 | 79 | 2.61e-21 | 87.0 |
| MS.gene04574.t1 | AT1G75250 | 53.846 | 78 | 36 | 0 | 29 | 106 | 2 | 79 | 4.05e-21 | 87.4 |
| MS.gene04574.t1 | AT3G10590 | 37.017 | 181 | 97 | 7 | 36 | 208 | 4 | 175 | 3.14e-20 | 87.4 |
| MS.gene04574.t1 | AT2G21650 | 54.545 | 66 | 30 | 0 | 39 | 104 | 14 | 79 | 1.74e-17 | 77.0 |
| MS.gene04574.t1 | AT4G39250 | 47.059 | 68 | 36 | 0 | 39 | 106 | 14 | 81 | 7.72e-16 | 72.4 |
| MS.gene04574.t1 | AT1G19510 | 55.738 | 61 | 27 | 0 | 43 | 103 | 16 | 76 | 1.13e-15 | 72.0 |
| MS.gene04574.t1 | AT2G18328 | 51.613 | 62 | 30 | 0 | 43 | 104 | 15 | 76 | 2.90e-12 | 62.0 |
| MS.gene04574.t1 | AT4G36570 | 61.364 | 44 | 17 | 0 | 39 | 82 | 12 | 55 | 6.96e-11 | 57.4 |
Find 58 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGAGTCTTCTTATTT+TGG | 0.078101 | 3.1:+46915860 | MS.gene04574:CDS |
| ATTTGACAGGTTATTTCTAT+TGG | 0.210653 | 3.1:+46915436 | MS.gene04574:intron |
| GGAGTTAATAATAACTCTTA+TGG | 0.241432 | 3.1:+46915800 | MS.gene04574:CDS |
| TATTTCATCAGACAACTTTC+AGG | 0.257079 | 3.1:+46915554 | MS.gene04574:CDS |
| AAACCAATTGTTGGTATTGT+TGG | 0.291167 | 3.1:-46914542 | None:intergenic |
| TTAGATTGGGTGAATTCTTC+TGG | 0.292652 | 3.1:+46914817 | MS.gene04574:CDS |
| TTCACCCAATCTAAGGTAAA+AGG | 0.308169 | 3.1:-46914808 | None:intergenic |
| GCTGGTTTGGTTCCAATTCC+TGG | 0.315843 | 3.1:+46914766 | MS.gene04574:CDS |
| GGTGCATGAGGGTGAGAATT+TGG | 0.327156 | 3.1:-46914505 | None:intergenic |
| CCTTTCTTCCTTTCCTGATC+AGG | 0.333627 | 3.1:-46914892 | None:intergenic |
| TTTGACAGGTTATTTCTATT+GGG | 0.339731 | 3.1:+46915437 | MS.gene04574:intron |
| CTCTTGGTTTCTTCTGAAGT+TGG | 0.347825 | 3.1:-46915650 | None:intergenic |
| AGTGGAAAGAGAGGCTCTTC+TGG | 0.351976 | 3.1:+46914862 | MS.gene04574:CDS |
| ATCTTACTTGTGTTCTTCTT+CGG | 0.354438 | 3.1:-46914926 | None:intergenic |
| GCATTAACAGGAGCACAAAA+TGG | 0.365638 | 3.1:+46914584 | MS.gene04574:CDS |
| AGAAGAATTCACCCAATCTA+AGG | 0.374549 | 3.1:-46914815 | None:intergenic |
| ACATCAACAACACTCTTTCC+AGG | 0.376605 | 3.1:-46914697 | None:intergenic |
| TACTTGTTCATAATCATGTT+TGG | 0.382661 | 3.1:-46915683 | None:intergenic |
| TGCTCTTGCAGTTTATGATA+AGG | 0.387222 | 3.1:+46914636 | MS.gene04574:CDS |
| ATTCCAACAATACCAACAAT+TGG | 0.395051 | 3.1:+46914539 | MS.gene04574:CDS |
| ATTGTAGCAATAGCATTAAC+AGG | 0.398247 | 3.1:+46914572 | MS.gene04574:CDS |
| GATGAATCAGTATAAGGAAT+TGG | 0.401455 | 3.1:+46914720 | MS.gene04574:CDS |
| GTAGTACTATAACCAGGAAT+TGG | 0.407318 | 3.1:-46914778 | None:intergenic |
| GTTGTTGAGAAGATTGCATT+TGG | 0.408588 | 3.1:-46915907 | None:intergenic |
| GTTTGGTGAAGTTGATCTCT+TGG | 0.418126 | 3.1:-46915666 | None:intergenic |
| TCAAACAATTTGTTCTCTGC+AGG | 0.426400 | 3.1:-46914610 | None:intergenic |
| TTGTGTTCTTCTTCGGTCCA+TGG | 0.429989 | 3.1:-46914919 | None:intergenic |
| GATGTTTGTAATATAGAAGC+TGG | 0.431912 | 3.1:+46914748 | MS.gene04574:CDS |
| AAAAGTATGGAAAAGGTGAT+TGG | 0.434556 | 3.1:+46915465 | MS.gene04574:CDS |
| TTGTAATATAGAAGCTGGTT+TGG | 0.450084 | 3.1:+46914753 | MS.gene04574:CDS |
| GAGTTATTATTAACTCCATA+AGG | 0.453193 | 3.1:-46915794 | None:intergenic |
| TGATGTGATGAATCAGTATA+AGG | 0.454237 | 3.1:+46914714 | MS.gene04574:CDS |
| TTCTGGTAGATCTCCTGATC+AGG | 0.477520 | 3.1:+46914879 | MS.gene04574:CDS |
| GTGAATTCTTCTGGTCATGA+TGG | 0.491427 | 3.1:+46914826 | MS.gene04574:CDS |
| CAAGGAACTTTGTGATCACT+AGG | 0.491493 | 3.1:+46915498 | MS.gene04574:CDS |
| TTGAATGCTGTCATAGTAGC+TGG | 0.523867 | 3.1:-46915743 | None:intergenic |
| GCTACCTTATGCCACCGATC+CGG | 0.536074 | 3.1:-46914664 | None:intergenic |
| AGAGGAATTAGTGGAAAGAG+AGG | 0.538143 | 3.1:+46914853 | MS.gene04574:CDS |
| CCTGATCAGGAAAGGAAGAA+AGG | 0.540469 | 3.1:+46914892 | MS.gene04574:CDS |
| AAGGTAGCTGCAATGATCCC+TGG | 0.550717 | 3.1:+46914679 | MS.gene04574:CDS |
| GCATGGCTAGCTACTTGTGT+TGG | 0.551417 | 3.1:-46915524 | None:intergenic |
| ATGAAAACTTGTTCATGTGA+TGG | 0.562419 | 3.1:-46915767 | None:intergenic |
| TACGCCGGATCGGTGGCATA+AGG | 0.566659 | 3.1:+46914660 | MS.gene04574:CDS |
| CTCAGAAGTGGTGTTAGCAG+TGG | 0.576504 | 3.1:-46915708 | None:intergenic |
| TGATGAAATATTTCTGAGCA+TGG | 0.587728 | 3.1:-46915541 | None:intergenic |
| ATGATAAGGATACGCCGGAT+CGG | 0.588112 | 3.1:+46914650 | MS.gene04574:CDS |
| CTGAAAATGCATCTCAGAAG+TGG | 0.589832 | 3.1:-46915720 | None:intergenic |
| AAATAAGAAGACTCATGAAG+AGG | 0.592849 | 3.1:-46915857 | None:intergenic |
| CATCAACAACACTCTTTCCA+GGG | 0.594776 | 3.1:-46914696 | None:intergenic |
| GTGATTGGAGAAACATATCA+AGG | 0.596845 | 3.1:+46915480 | MS.gene04574:CDS |
| GTAGATCTCCTGATCAGGAA+AGG | 0.600023 | 3.1:+46914884 | MS.gene04574:CDS |
| TTCATCAGACAACTTTCAGG+AGG | 0.604647 | 3.1:+46915557 | MS.gene04574:CDS |
| AAAGGAAGAAAGGTGTGCCA+TGG | 0.605391 | 3.1:+46914902 | MS.gene04574:CDS |
| ATAAGGATACGCCGGATCGG+TGG | 0.605758 | 3.1:+46914653 | MS.gene04574:CDS |
| TGGACCTCAGACACAAAACA+TGG | 0.622490 | 3.1:+46915880 | MS.gene04574:CDS |
| AGTTTATGATAAGGATACGC+CGG | 0.649185 | 3.1:+46914645 | MS.gene04574:CDS |
| GAAGCAGTAGTACTATAACC+AGG | 0.680914 | 3.1:-46914784 | None:intergenic |
| TTTGAACAAATGGTGCATGA+GGG | 0.682304 | 3.1:-46914516 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTTAAGTATTTTTGA+GGG | + | chr3.1:46915351-46915370 | MS.gene04574:intron | 10.0% |
| !!! | TATTTATTTAAGTATTTTTG+AGG | + | chr3.1:46915350-46915369 | MS.gene04574:intron | 10.0% |
| !!! | ATATTTATTTAAGTTGTTGA+AGG | + | chr3.1:46915378-46915397 | MS.gene04574:intron | 15.0% |
| !!! | TATTTATTTAAGTTGTTGAA+GGG | + | chr3.1:46915379-46915398 | MS.gene04574:intron | 15.0% |
| !! | CATAAACTTTAAATTACATC+CGG | - | chr3.1:46915211-46915230 | None:intergenic | 20.0% |
| !! | GATTATGAAAATAATTTGAC+AGG | + | chr3.1:46915423-46915442 | MS.gene04574:intron | 20.0% |
| ! | AACTAATATTAGTGCATGTT+TGG | + | chr3.1:46915059-46915078 | MS.gene04574:intron | 25.0% |
| ! | ATCTGTAGTTATTAAGAGTT+AGG | + | chr3.1:46915267-46915286 | MS.gene04574:intron | 25.0% |
| ! | CTTAACTAATAACTACCAAT+AGG | - | chr3.1:46915298-46915317 | None:intergenic | 25.0% |
| ! | GAGTTATTATTAACTCCATA+AGG | - | chr3.1:46915797-46915816 | None:intergenic | 25.0% |
| ! | GGAGTTAATAATAACTCTTA+TGG | + | chr3.1:46915800-46915819 | MS.gene04574:CDS | 25.0% |
| ! | TAAAGTTTATGTATGAACCT+AGG | + | chr3.1:46915220-46915239 | MS.gene04574:intron | 25.0% |
| ! | TACTTGTTCATAATCATGTT+TGG | - | chr3.1:46915686-46915705 | None:intergenic | 25.0% |
| !! | TATGTGAAGATTTTACTGTT+TGG | + | chr3.1:46915009-46915028 | MS.gene04574:intron | 25.0% |
| !! | TGACAAAAGCTACATTTTAA+AGG | - | chr3.1:46915121-46915140 | None:intergenic | 25.0% |
| !! | TTGTTGGAATTTTGAACAAA+TGG | - | chr3.1:46914529-46914548 | None:intergenic | 25.0% |
| !!! | ATTTGACAGGTTATTTCTAT+TGG | + | chr3.1:46915436-46915455 | MS.gene04574:intron | 25.0% |
| !!! | TTTGACAGGTTATTTCTATT+GGG | + | chr3.1:46915437-46915456 | MS.gene04574:intron | 25.0% |
| AAACCAATTGTTGGTATTGT+TGG | - | chr3.1:46914545-46914564 | None:intergenic | 30.0% | |
| AAATAAGAAGACTCATGAAG+AGG | - | chr3.1:46915860-46915879 | None:intergenic | 30.0% | |
| AAGAGTTAGGTATTTCCTAT+TGG | + | chr3.1:46915280-46915299 | MS.gene04574:intron | 30.0% | |
| ATCTTACTTGTGTTCTTCTT+CGG | - | chr3.1:46914929-46914948 | None:intergenic | 30.0% | |
| ATCTTCCAAAAACCAATTGT+TGG | - | chr3.1:46914554-46914573 | None:intergenic | 30.0% | |
| ATTCCAACAATACCAACAAT+TGG | + | chr3.1:46914539-46914558 | MS.gene04574:CDS | 30.0% | |
| ATTGTAGCAATAGCATTAAC+AGG | + | chr3.1:46914572-46914591 | MS.gene04574:CDS | 30.0% | |
| GATGAATCAGTATAAGGAAT+TGG | + | chr3.1:46914720-46914739 | MS.gene04574:CDS | 30.0% | |
| GATGTTTGTAATATAGAAGC+TGG | + | chr3.1:46914748-46914767 | MS.gene04574:CDS | 30.0% | |
| TATTTCATCAGACAACTTTC+AGG | + | chr3.1:46915554-46915573 | MS.gene04574:CDS | 30.0% | |
| TGATGTGATGAATCAGTATA+AGG | + | chr3.1:46914714-46914733 | MS.gene04574:CDS | 30.0% | |
| TTGTAATATAGAAGCTGGTT+TGG | + | chr3.1:46914753-46914772 | MS.gene04574:CDS | 30.0% | |
| ! | AAAAGTATGGAAAAGGTGAT+TGG | + | chr3.1:46915465-46915484 | MS.gene04574:CDS | 30.0% |
| ! | ATGAAAACTTGTTCATGTGA+TGG | - | chr3.1:46915770-46915789 | None:intergenic | 30.0% |
| ! | GTTTGGATTGATGGTTAATT+TGG | - | chr3.1:46915178-46915197 | None:intergenic | 30.0% |
| ! | TGATGAAATATTTCTGAGCA+TGG | - | chr3.1:46915544-46915563 | None:intergenic | 30.0% |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr3.1:46914804-46914823 | MS.gene04574:CDS | 30.0% |
| ! | TTTTGTCAAAATCACGATGA+CGG | + | chr3.1:46915133-46915152 | MS.gene04574:intron | 30.0% |
| !! | CTTCATGAGTCTTCTTATTT+TGG | + | chr3.1:46915860-46915879 | MS.gene04574:CDS | 30.0% |
| !!! | CAATACCAACAATTGGTTTT+TGG | + | chr3.1:46914546-46914565 | MS.gene04574:CDS | 30.0% |
| ACTTTAAATTACATCCGGTC+AGG | - | chr3.1:46915206-46915225 | None:intergenic | 35.0% | |
| AGAAGAATTCACCCAATCTA+AGG | - | chr3.1:46914818-46914837 | None:intergenic | 35.0% | |
| AGTTTATGATAAGGATACGC+CGG | + | chr3.1:46914645-46914664 | MS.gene04574:CDS | 35.0% | |
| CTATTGGGTCTGAAAAAGTA+TGG | + | chr3.1:46915452-46915471 | MS.gene04574:CDS | 35.0% | |
| GTAGTACTATAACCAGGAAT+TGG | - | chr3.1:46914781-46914800 | None:intergenic | 35.0% | |
| GTGATTGGAGAAACATATCA+AGG | + | chr3.1:46915480-46915499 | MS.gene04574:CDS | 35.0% | |
| GTTGTTGAGAAGATTGCATT+TGG | - | chr3.1:46915910-46915929 | None:intergenic | 35.0% | |
| TGCTCTTGCAGTTTATGATA+AGG | + | chr3.1:46914636-46914655 | MS.gene04574:CDS | 35.0% | |
| TTAGATTGGGTGAATTCTTC+TGG | + | chr3.1:46914817-46914836 | MS.gene04574:CDS | 35.0% | |
| TTATGTATGAACCTAGGAGT+TGG | + | chr3.1:46915226-46915245 | MS.gene04574:intron | 35.0% | |
| TTTGAACAAATGGTGCATGA+GGG | - | chr3.1:46914519-46914538 | None:intergenic | 35.0% | |
| ! | AAAACCATGTTTTGTGTCTG+AGG | - | chr3.1:46915887-46915906 | None:intergenic | 35.0% |
| ! | CAAGTTTTCATGTCTCCTTA+TGG | + | chr3.1:46915779-46915798 | MS.gene04574:CDS | 35.0% |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr3.1:46914803-46914822 | MS.gene04574:CDS | 35.0% |
| ! | GGTCTGAAAAAGTATGGAAA+AGG | + | chr3.1:46915458-46915477 | MS.gene04574:CDS | 35.0% |
| ! | TCAAACAATTTGTTCTCTGC+AGG | - | chr3.1:46914613-46914632 | None:intergenic | 35.0% |
| ! | TTCACCCAATCTAAGGTAAA+AGG | - | chr3.1:46914811-46914830 | None:intergenic | 35.0% |
| ! | TTTTGAACAAATGGTGCATG+AGG | - | chr3.1:46914520-46914539 | None:intergenic | 35.0% |
| !!! | GATGGTTTTAGAGGAATTAG+TGG | + | chr3.1:46914844-46914863 | MS.gene04574:CDS | 35.0% |
| ACATCAACAACACTCTTTCC+AGG | - | chr3.1:46914700-46914719 | None:intergenic | 40.0% | |
| AGAGGAATTAGTGGAAAGAG+AGG | + | chr3.1:46914853-46914872 | MS.gene04574:CDS | 40.0% | |
| ATTTCACTTCACCAACTCCT+AGG | - | chr3.1:46915240-46915259 | None:intergenic | 40.0% | |
| CAAGGAACTTTGTGATCACT+AGG | + | chr3.1:46915498-46915517 | MS.gene04574:CDS | 40.0% | |
| CATCAACAACACTCTTTCCA+GGG | - | chr3.1:46914699-46914718 | None:intergenic | 40.0% | |
| CTGAAAATGCATCTCAGAAG+TGG | - | chr3.1:46915723-46915742 | None:intergenic | 40.0% | |
| GAAGCAGTAGTACTATAACC+AGG | - | chr3.1:46914787-46914806 | None:intergenic | 40.0% | |
| GTGAATTCTTCTGGTCATGA+TGG | + | chr3.1:46914826-46914845 | MS.gene04574:CDS | 40.0% | |
| TTCATCAGACAACTTTCAGG+AGG | + | chr3.1:46915557-46915576 | MS.gene04574:CDS | 40.0% | |
| TTGAATGCTGTCATAGTAGC+TGG | - | chr3.1:46915746-46915765 | None:intergenic | 40.0% | |
| ! | GCATTAACAGGAGCACAAAA+TGG | + | chr3.1:46914584-46914603 | MS.gene04574:CDS | 40.0% |
| ! | GTTTGGTGAAGTTGATCTCT+TGG | - | chr3.1:46915669-46915688 | None:intergenic | 40.0% |
| !! | CTCTTGGTTTCTTCTGAAGT+TGG | - | chr3.1:46915653-46915672 | None:intergenic | 40.0% |
| !!! | TCTGGTCATGATGGTTTTAG+AGG | + | chr3.1:46914835-46914854 | MS.gene04574:CDS | 40.0% |
| AATCCAAACATGCACCTGAC+CGG | + | chr3.1:46915189-46915208 | MS.gene04574:intron | 45.0% | |
| ATGATAAGGATACGCCGGAT+CGG | + | chr3.1:46914650-46914669 | MS.gene04574:CDS | 45.0% | |
| CAGGTGCATGTTTGGATTGA+TGG | - | chr3.1:46915187-46915206 | None:intergenic | 45.0% | |
| CCTGATCAGGAAAGGAAGAA+AGG | + | chr3.1:46914892-46914911 | MS.gene04574:CDS | 45.0% | |
| CCTTTCTTCCTTTCCTGATC+AGG | - | chr3.1:46914895-46914914 | None:intergenic | 45.0% | |
| GTAGATCTCCTGATCAGGAA+AGG | + | chr3.1:46914884-46914903 | MS.gene04574:CDS | 45.0% | |
| TGGACCTCAGACACAAAACA+TGG | + | chr3.1:46915880-46915899 | MS.gene04574:CDS | 45.0% | |
| TTCTGGTAGATCTCCTGATC+AGG | + | chr3.1:46914879-46914898 | MS.gene04574:CDS | 45.0% | |
| TTGTGTTCTTCTTCGGTCCA+TGG | - | chr3.1:46914922-46914941 | None:intergenic | 45.0% | |
| ! | AAAGGAAGAAAGGTGTGCCA+TGG | + | chr3.1:46914902-46914921 | MS.gene04574:CDS | 45.0% |
| AAGGTAGCTGCAATGATCCC+TGG | + | chr3.1:46914679-46914698 | MS.gene04574:CDS | 50.0% | |
| AGTGGAAAGAGAGGCTCTTC+TGG | + | chr3.1:46914862-46914881 | MS.gene04574:CDS | 50.0% | |
| GGTGCATGAGGGTGAGAATT+TGG | - | chr3.1:46914508-46914527 | None:intergenic | 50.0% | |
| ! | CTCAGAAGTGGTGTTAGCAG+TGG | - | chr3.1:46915711-46915730 | None:intergenic | 50.0% |
| ! | GCATGGCTAGCTACTTGTGT+TGG | - | chr3.1:46915527-46915546 | None:intergenic | 50.0% |
| !! | GCTGGTTTGGTTCCAATTCC+TGG | + | chr3.1:46914766-46914785 | MS.gene04574:CDS | 50.0% |
| ATAAGGATACGCCGGATCGG+TGG | + | chr3.1:46914653-46914672 | MS.gene04574:CDS | 55.0% | |
| CATCCGGTCAGGTGCATGTT+TGG | - | chr3.1:46915195-46915214 | None:intergenic | 55.0% | |
| GCTACCTTATGCCACCGATC+CGG | - | chr3.1:46914667-46914686 | None:intergenic | 55.0% | |
| TACGCCGGATCGGTGGCATA+AGG | + | chr3.1:46914660-46914679 | MS.gene04574:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 46914490 | 46915946 | 46914490 | ID=MS.gene04574 |
| chr3.1 | mRNA | 46914490 | 46915946 | 46914490 | ID=MS.gene04574.t1;Parent=MS.gene04574 |
| chr3.1 | exon | 46914490 | 46914941 | 46914490 | ID=MS.gene04574.t1.exon1;Parent=MS.gene04574.t1 |
| chr3.1 | CDS | 46914490 | 46914941 | 46914490 | ID=cds.MS.gene04574.t1;Parent=MS.gene04574.t1 |
| chr3.1 | exon | 46915445 | 46915946 | 46915445 | ID=MS.gene04574.t1.exon2;Parent=MS.gene04574.t1 |
| chr3.1 | CDS | 46915445 | 46915946 | 46915445 | ID=cds.MS.gene04574.t1;Parent=MS.gene04574.t1 |
| Gene Sequence |
| Protein sequence |
